RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2466
(224 letters)
>d2e9xd1 a.278.1.4 (D:21-165) GINS complex subunit 4, SLD5 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 142 bits (360), Expect = 5e-44
Identities = 52/145 (35%), Positives = 101/145 (69%), Gaps = 2/145 (1%)
Query: 25 LSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRIEIHRM 84
L+ +++E ++ AW NEK +PE+L +K E ++C++EQ++ MEEN+ + +++D+++ IH+M
Sbjct: 1 LTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRRAKREDLKVSIHQM 60
Query: 85 EIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNM-YLSHDELKYAKSYLKSIDNH 143
E+ERIR+V++SYLR R+ KIEKF +++++ R LS +EL +A+ ++ + +++
Sbjct: 61 EMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREFMANTESY 120
Query: 144 FDK-YLNMLPPNLRTLEENKKLIKP 167
L +PPNL+ ++ + + KP
Sbjct: 121 LKNVALKHMPPNLQKVDLFRAVPKP 145
>d2e9xd2 d.344.1.3 (D:166-223) GINS complex subunit 4, SLD5 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 58.3 bits (141), Expect = 2e-12
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 168 DLNTYVFLRAGKDVANVYIRDMSENKEDEFV-LDEGSQHILPYESIAEFVKNNDVQLL 224
DL++YVFLR + N+ + ++ + D + L++GSQH++ Y++IA V + VQL+
Sbjct: 1 DLDSYVFLRVRERQENILVEPDTDEQRDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI 58
>d2e9xa1 a.278.1.1 (A:1-144) DNA replication complex GINS protein
PSF1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 144
Score = 32.5 bits (74), Expect = 0.017
Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 20/113 (17%)
Query: 59 LEQIKQMEENIEKL---------RKDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTL 109
LE++K + E + I+ + R R +YL R+ +I
Sbjct: 33 LEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYLYDRLLRIRALRW 92
Query: 110 DIVQQDFERSSDNMYLSHDELKYAKSYLKSI---------DNHFDKYLNMLPP 153
+ + ++ +E+++ +Y +S+ D D +M PP
Sbjct: 93 EYGSVLPNALRFH--MAAEEMEWFNNYKRSLATYMRSLGGDEGLDITQDMKPP 143
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania
major [TaxId: 5664]}
Length = 374
Score = 27.0 bits (59), Expect = 2.1
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 14/46 (30%)
Query: 31 LETIKTAWKNEKLSPEI-----LPNKVEYIDC-----MLEQIKQME 66
LE+IK + L + LP + + D + IK+M
Sbjct: 9 LESIK--YTPGSL--RLLDQRKLPLETVFDDVLTVEDIWSAIKEMR 50
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 25.6 bits (56), Expect = 2.2
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 38 WKNEKLS-PEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRIEIHRMEIERIR 90
NEK IL YI + + +++ + LRK R E + ++E++
Sbjct: 36 ENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRK---RREQLKHKLEQLG 86
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 26.7 bits (57), Expect = 2.6
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 66 EENIEKLRKDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQ 114
I+ L K R +RFV + E ++ L+ V+
Sbjct: 298 SAMIDALLKAGFGFYHDRWGPNVVRFVTS--FATTAEDVDHL-LNQVRL 343
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 24.8 bits (54), Expect = 3.3
Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 39 KNEKLS-PEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRIEIHRMEIERIR 90
+ EK S +IL EYI M + +++I+ L++ + + ++ +
Sbjct: 32 QGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR---QNALLEQQVRALG 81
>d2plsa1 d.145.1.4 (A:345-428) Hypothetical protein CT0541
{Chlorobium tepidum [TaxId: 1097]}
Length = 84
Score = 24.6 bits (54), Expect = 4.4
Identities = 8/48 (16%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 58 MLEQIKQMEENIEKLRKDDIRIEIHRMEIERIRFVITSYLRVRIEKIE 105
++ + ++ + + ++ R+E+ M+ +RI +V KI+
Sbjct: 44 IMWLLGRLPQTGDITFWENWRLEVIDMDSKRID-------KVLATKID 84
>d1khba2 c.109.1.1 (A:10-259) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 250
Score = 25.5 bits (56), Expect = 5.6
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 155 LRTLEENKKLIKPDL--NTYVFLRAGKDVANVYIRDM--SENKED 195
L +EE L + N ++ L +DVA + + + ++ + D
Sbjct: 48 LGQMEEEGILRRLKKYDNCWLALTDPRDVARIESKTVIVTQEQRD 92
>d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria
meningitidis [TaxId: 487]}
Length = 76
Score = 23.9 bits (52), Expect = 6.7
Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 40 NEKLSPEILPNKVEYI---DCMLEQIKQMEENIEKLRKDDIRIEIHRMEIERIRFVITSY 96
+L+ ++ ++E+++ + + + R E+ E +RI
Sbjct: 15 APQLNLPQQEEDADFHTVAGLIMEELQTIPDVGDFADFHGWRFEVVEKEGQRIE------ 68
Query: 97 LRVRIEKI 104
RV+I K+
Sbjct: 69 -RVKITKL 75
>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus
influenzae [TaxId: 727]}
Length = 92
Score = 24.2 bits (53), Expect = 7.4
Identities = 8/30 (26%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Query: 58 MLEQIKQMEENIEKLRKDDIRIEIHRMEIE 87
+++Q +QM+E ++K+++ EI ++E+
Sbjct: 4 LMKQAQQMQEKMQKMQE-----EIAQLEVT 28
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.373
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 848,780
Number of extensions: 42115
Number of successful extensions: 209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 45
Length of query: 224
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,281,736
Effective search space: 182006512
Effective search space used: 182006512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.5 bits)