BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2469
(220 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3T197|CX056_BOVIN UPF0428 protein CXorf56 homolog OS=Bos taurus PE=2 SV=1
Length = 222
Score = 250 bits (638), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 140/223 (62%), Positives = 172/223 (77%), Gaps = 9/223 (4%)
Query: 1 MPKVISRSIVCSDTKDKEEYGE-EKPLHIYYCVCGQMTLILDCAVEKLPLRRRDGARVID 59
MPKV+SRS+VCSDT+D+EEY + EKPLH+YYC+CGQM L+LDC +EKLP+R RD +RVID
Sbjct: 1 MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCLCGQMVLVLDCQLEKLPMRPRDRSRVID 60
Query: 60 GPKHAHKL-TCEPDEVFHLKRPEGIERQHRFKCKKCGLFLYYKHDP-SSNIIFIVQGAVV 117
G KHAHK E +E +L+RPEGIERQ+R KC KCGL L+Y+ P ++ + FIV GAVV
Sbjct: 61 GAKHAHKFCNTEDEETIYLRRPEGIERQYRKKCAKCGLPLFYQSQPKNAPVTFIVDGAVV 120
Query: 118 KSSGEMPKMDIYNQVAVAKPKKIMVTKHTKNMGKFSSVTVSTIDEEEDEIEAREIADSYA 177
K K +IY Q PKK+M+TK TK+MGKFSSVTVSTIDEEE+EIEARE+ADSYA
Sbjct: 121 KFGQGFGKTNIYTQ-KQEPPKKVMMTKRTKDMGKFSSVTVSTIDEEEEEIEAREVADSYA 179
Query: 178 NNARIIEKQLERKGMNKRKSDSTTLNTGETEVKKP-VRGTLID 219
NA++IEKQLERKGM+KR+ E E KK ++GTLID
Sbjct: 180 QNAKVIEKQLERKGMSKRRLQ----ELAELEAKKAKMKGTLID 218
>sp|Q9H5V9|CX056_HUMAN UPF0428 protein CXorf56 OS=Homo sapiens GN=CXorf56 PE=1 SV=1
Length = 222
Score = 248 bits (633), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/223 (62%), Positives = 171/223 (76%), Gaps = 9/223 (4%)
Query: 1 MPKVISRSIVCSDTKDKEEYGE-EKPLHIYYCVCGQMTLILDCAVEKLPLRRRDGARVID 59
MPKV+SRS+VCSDT+D+EEY + EKPLH+YYC+CGQM L+LDC +EKLP+R RD +RVID
Sbjct: 1 MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCLCGQMVLVLDCQLEKLPMRPRDRSRVID 60
Query: 60 GPKHAHKL-TCEPDEVFHLKRPEGIERQHRFKCKKCGLFLYYKHDP-SSNIIFIVQGAVV 117
KHAHK E +E +L+RPEGIERQ+R KC KCGL L+Y+ P ++ + FIV GAVV
Sbjct: 61 AAKHAHKFCNTEDEETMYLRRPEGIERQYRKKCAKCGLPLFYQSQPKNAPVTFIVDGAVV 120
Query: 118 KSSGEMPKMDIYNQVAVAKPKKIMVTKHTKNMGKFSSVTVSTIDEEEDEIEAREIADSYA 177
K K +IY Q PKK+M+TK TK+MGKFSSVTVSTIDEEE+EIEARE+ADSYA
Sbjct: 121 KFGQGFGKTNIYTQ-KQEPPKKVMMTKRTKDMGKFSSVTVSTIDEEEEEIEAREVADSYA 179
Query: 178 NNARIIEKQLERKGMNKRKSDSTTLNTGETEVKKP-VRGTLID 219
NA++IEKQLERKGM+KR+ E E KK ++GTLID
Sbjct: 180 QNAKVIEKQLERKGMSKRRLQ----ELAELEAKKAKMKGTLID 218
>sp|Q8VDP2|CX056_MOUSE UPF0428 protein CXorf56 homolog OS=Mus musculus PE=2 SV=1
Length = 222
Score = 247 bits (631), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 139/223 (62%), Positives = 171/223 (76%), Gaps = 9/223 (4%)
Query: 1 MPKVISRSIVCSDTKDKEEYGE-EKPLHIYYCVCGQMTLILDCAVEKLPLRRRDGARVID 59
MPKV+SRS+VCSDT+D+EEY + EKPLH+YYC+CGQM L+LDC +EKLP+R RD +RVID
Sbjct: 1 MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCLCGQMVLVLDCQLEKLPMRPRDRSRVID 60
Query: 60 GPKHAHKL-TCEPDEVFHLKRPEGIERQHRFKCKKCGLFLYYKHDP-SSNIIFIVQGAVV 117
KHAHK E +E +L+RPEGIERQ+R KC KCGL L+Y+ P ++ + FIV GAVV
Sbjct: 61 AAKHAHKFCNTEDEETTYLRRPEGIERQYRKKCAKCGLPLFYQSQPKNAPVTFIVDGAVV 120
Query: 118 KSSGEMPKMDIYNQVAVAKPKKIMVTKHTKNMGKFSSVTVSTIDEEEDEIEAREIADSYA 177
K K +IY Q PKK+M+TK TK+MGKFSSVTVSTIDEEE+EIEARE+ADSYA
Sbjct: 121 KFGQGFGKTNIYTQ-KQEPPKKVMMTKRTKDMGKFSSVTVSTIDEEEEEIEAREVADSYA 179
Query: 178 NNARIIEKQLERKGMNKRKSDSTTLNTGETEVKKP-VRGTLID 219
NA++IEKQLERKGM+KR+ E E KK ++GTLID
Sbjct: 180 QNAKVIEKQLERKGMSKRRLQ----ELAELEAKKAKMKGTLID 218
>sp|Q5RAT0|CX056_PONAB UPF0428 protein CXorf56 homolog OS=Pongo abelii PE=2 SV=1
Length = 222
Score = 245 bits (625), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 138/223 (61%), Positives = 170/223 (76%), Gaps = 9/223 (4%)
Query: 1 MPKVISRSIVCSDTKDKEEYGE-EKPLHIYYCVCGQMTLILDCAVEKLPLRRRDGARVID 59
MPKV+SRS+VCSDT+D+EEY + EKPLH+YYC+CGQM L+LDC +EKLP+R RD +RVID
Sbjct: 1 MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCLCGQMVLVLDCQLEKLPMRPRDRSRVID 60
Query: 60 GPKHAHKL-TCEPDEVFHLKRPEGIERQHRFKCKKCGLFLYYKHDP-SSNIIFIVQGAVV 117
KHAHK E +E +L+RPEGIERQ+ KC KCGL L+Y+ P ++ + FIV GAVV
Sbjct: 61 AAKHAHKFCNTEDEETMYLRRPEGIERQYGKKCAKCGLPLFYQSQPKNAPVTFIVDGAVV 120
Query: 118 KSSGEMPKMDIYNQVAVAKPKKIMVTKHTKNMGKFSSVTVSTIDEEEDEIEAREIADSYA 177
K K +IY Q PKK+M+TK TK+MGKFSSVTVSTIDEEE+EIEARE+ADSYA
Sbjct: 121 KFGQGFGKTNIYTQ-KQEPPKKVMMTKRTKDMGKFSSVTVSTIDEEEEEIEAREVADSYA 179
Query: 178 NNARIIEKQLERKGMNKRKSDSTTLNTGETEVKKP-VRGTLID 219
NA++IEKQLERKGM+KR+ E E KK ++GTLID
Sbjct: 180 QNAKVIEKQLERKGMSKRRLQ----ELAELEAKKAKMKGTLID 218
>sp|Q66I61|CX056_DANRE UPF0428 protein CXorf56 homolog OS=Danio rerio GN=zgc:103697 PE=2
SV=1
Length = 224
Score = 244 bits (624), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 139/225 (61%), Positives = 168/225 (74%), Gaps = 11/225 (4%)
Query: 1 MPKVISRSIVCSDTKDKEEYGE-EKPLHIYYCVCGQMTLILDCAVEKLPLRRRDGARVID 59
MPKV+SRS+VCSDT+D+EEY + EKPLH+YYC+CGQM L+LDC +EKLP+R RD ARVID
Sbjct: 1 MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCLCGQMVLVLDCQIEKLPMRPRDKARVID 60
Query: 60 GPKHAHKL-TCEPDEVFHLKRPEGIERQHRFKCKKCGLFLYYKHD-PSSNIIFIVQGAVV 117
KHAHK E DE +LKR EGIERQ+R KC KCGL L+Y+H S+ FIV GA+V
Sbjct: 61 AAKHAHKFCNVEEDEAVYLKRSEGIERQYRKKCGKCGLLLFYQHQMKSTQTTFIVDGALV 120
Query: 118 KSSGEMPKMDIYNQVAVAKPKKI--MVTKHTKNMGKFSSVTVSTIDEEEDEIEAREIADS 175
K +Y+Q PKK+ M+TK TK+MGKFSSVTVSTIDEEE+EIEARE+ADS
Sbjct: 121 KFGQGFGNTSVYSQ-KQETPKKVRVMMTKRTKDMGKFSSVTVSTIDEEEEEIEAREVADS 179
Query: 176 YANNARIIEKQLERKGMNKRKSDSTTLNTGETEVKKP-VRGTLID 219
YA NA++IEKQLERKGM+KR+ E E KK ++GTLID
Sbjct: 180 YAQNAKVIEKQLERKGMSKRRLQ----EPAELEAKKAKMKGTLID 220
>sp|Q6P338|CX056_XENTR UPF0428 protein CXorf56 homolog OS=Xenopus tropicalis
GN=TNeu084h20.1 PE=2 SV=1
Length = 222
Score = 243 bits (620), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 137/223 (61%), Positives = 168/223 (75%), Gaps = 9/223 (4%)
Query: 1 MPKVISRSIVCSDTKDKEEYGE-EKPLHIYYCVCGQMTLILDCAVEKLPLRRRDGARVID 59
MPKV+SRS+VCSDT+D+EEY + EKPLH+YYC+CGQM L+LDC +EKLP+R RD ARVID
Sbjct: 1 MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCLCGQMVLVLDCQLEKLPMRPRDKARVID 60
Query: 60 GPKHAHKL-TCEPDEVFHLKRPEGIERQHRFKCKKCGLFLYYKHDPSS-NIIFIVQGAVV 117
KHAHK E +E +L+RP+GIERQ+R KC KC L L+Y+H + FIV GA+V
Sbjct: 61 AAKHAHKFCNTEEEEPVYLRRPDGIERQYRKKCSKCSLLLFYQHSQKNVAATFIVNGALV 120
Query: 118 KSSGEMPKMDIYNQVAVAKPKKIMVTKHTKNMGKFSSVTVSTIDEEEDEIEAREIADSYA 177
K K +IY Q PKK+M+TK TK+MGKFSSVTVSTIDEEE+EIEARE+ADSYA
Sbjct: 121 KFGQGFGKTNIYTQKP-DPPKKVMMTKRTKDMGKFSSVTVSTIDEEEEEIEAREVADSYA 179
Query: 178 NNARIIEKQLERKGMNKRKSDSTTLNTGETEVKKP-VRGTLID 219
NA++IEKQLERKGM+KR+ E E KK ++GTLID
Sbjct: 180 QNAKVIEKQLERKGMSKRRLQ----ELAELEAKKAKMKGTLID 218
>sp|Q5U515|CX056_XENLA UPF0428 protein CXorf56 homolog OS=Xenopus laevis PE=2 SV=1
Length = 222
Score = 238 bits (606), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 135/223 (60%), Positives = 166/223 (74%), Gaps = 9/223 (4%)
Query: 1 MPKVISRSIVCSDTKDKEEYGE-EKPLHIYYCVCGQMTLILDCAVEKLPLRRRDGARVID 59
MPKV+SRS+VCSDT+D+EEY + EKPLH+YYC+CGQM L+LDC +EKLP+R RD ARVI
Sbjct: 1 MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYCLCGQMVLVLDCQLEKLPMRPRDRARVIG 60
Query: 60 GPKHAHKL-TCEPDEVFHLKRPEGIERQHRFKCKKCGLFLYYKHDP-SSNIIFIVQGAVV 117
KHAHK E +E +L+R +GIERQ+R KC KC L L+Y+H ++ FIV GA+V
Sbjct: 61 AAKHAHKFCNTEEEEPVYLRRSDGIERQYRKKCSKCSLLLFYQHSQKNAAATFIVNGALV 120
Query: 118 KSSGEMPKMDIYNQVAVAKPKKIMVTKHTKNMGKFSSVTVSTIDEEEDEIEAREIADSYA 177
K K IY Q PKK+M+TK TK+MGKFSSVTVSTIDEEE+EIEARE+ADSYA
Sbjct: 121 KFGQGFGKTSIYTQKP-DPPKKVMMTKRTKDMGKFSSVTVSTIDEEEEEIEAREVADSYA 179
Query: 178 NNARIIEKQLERKGMNKRKSDSTTLNTGETEVKKP-VRGTLID 219
NA++IEKQLERKGM+KR+ E E KK ++GTLID
Sbjct: 180 QNAKVIEKQLERKGMSKRRLQ----ELAELEAKKAKMKGTLID 218
>sp|Q9V412|U428_DROME UPF0428 protein CG16865 OS=Drosophila melanogaster GN=CG16865 PE=1
SV=1
Length = 247
Score = 231 bits (588), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 132/247 (53%), Positives = 167/247 (67%), Gaps = 27/247 (10%)
Query: 1 MPKVISRSIVCSDTKDKEEYGEEKPLHIYYCVCGQMTLILDCAVEKLPLRRRDGARVIDG 60
MPKV+SRSIVCSDTKD+EEY EEKPL+IYYC+C +M LILDC +E+LPLR D ARVI+
Sbjct: 1 MPKVVSRSIVCSDTKDQEEYNEEKPLNIYYCLCNKMALILDCTLEQLPLREVDNARVINA 60
Query: 61 PKHAHKLTCEPD-EVFHLKRP---EGIERQHRFKCKKCGLFLYYKHDPSSNIIFIVQGAV 116
HA+KLT P + ++KR GIE+Q+R+KC+ C L LYY+H P S++ F++ A+
Sbjct: 61 NDHANKLTHNPTPRMVYIKRKSRGNGIEKQYRYKCRSCSLPLYYRHSPDSHVTFVMSNAL 120
Query: 117 VKSSGEMPKMDIYN-------QVAVAKP----------------KKIMVTKHTKNMGKFS 153
+++ GE P + N + AKP KK++VT+HTKNMGKFS
Sbjct: 121 IRNKGESPLTQLLNSEIKGSFKAPAAKPATSAGPDDSGIVDASGKKVVVTRHTKNMGKFS 180
Query: 154 SVTVSTIDEEEDEIEAREIADSYANNARIIEKQLERKGMNKRKSDSTTLNTGETEVKKPV 213
SVTVSTIDEEEDEIEAREIADSYANNARIIEKQL+RKG T +K
Sbjct: 181 SVTVSTIDEEEDEIEAREIADSYANNARIIEKQLQRKGGKLSDVGIKTKTEDAPPPQKKQ 240
Query: 214 RGTLIDK 220
RGTL+++
Sbjct: 241 RGTLLER 247
>sp|G2TRS2|NEW20_SCHPO Uncharacterized protein new20 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=new20 PE=2 SV=1
Length = 115
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 29 YYCVCGQMTLILDCAVEKLPLRRRDGARVIDGPKHAHKLTCEPDEVFHLKRPE-GIERQH 87
Y+C CGQ+ L + ++ +LP R+ D V+D K H +++ R + G E++
Sbjct: 14 YFCPCGQLFLTIHVSLTRLPQRQLDKRHVVD-EKLNHIAHFSTGNKYYITRSDGGYEQRI 72
Query: 88 RFKCKKCGLFLYYKHDPSSNIIFI 111
+ C++C L Y + + I++
Sbjct: 73 QLLCRRCTLECAYALEAAPGYIYV 96
>sp|Q3ATP5|RPOB_CHLCH DNA-directed RNA polymerase subunit beta OS=Chlorobium
chlorochromatii (strain CaD3) GN=rpoB PE=3 SV=1
Length = 1300
Score = 31.2 bits (69), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 12/119 (10%)
Query: 105 SSNIIFIVQGAVVKSSGEMPKMDIYNQVAVAKPKKIMVTKHTKN--MGKFSSVTVSTI-- 160
+S+I+ + G V+ + + + +I+ Q+ +A K I V K N G SV ++TI
Sbjct: 243 ASDIVDMQTGEVISARTAITE-EIFEQILLAGYKSIKVMKSFSNNEKGMDKSVIINTILN 301
Query: 161 DEEEDEIEAREIA--DSYANNARIIEKQ---LERKGMNKRKSDSTTLNTGETEVKKPVR 214
D E EA EI + AN A IE LER N++K D + G +KK +R
Sbjct: 302 DSSATEEEALEIVYEELRANEAPDIEAARSFLERTFFNQKKYDLG--DVGRYRIKKKLR 358
>sp|Q2G8K7|RRF_NOVAD Ribosome-recycling factor OS=Novosphingobium aromaticivorans
(strain DSM 12444) GN=frr PE=3 SV=1
Length = 185
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 163 EEDEIEAREIADSYANNARIIEKQLERKGMNKRKSDSTTLNTGETEVKK 211
EE E ++A YA NARI + + R GM+ K+D + E E K+
Sbjct: 107 EERRKELAKLASKYAENARIAIRNVRRDGMDALKADESKKEISEDERKR 155
>sp|O26158|DAPAT_METTH LL-diaminopimelate aminotransferase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=dapL PE=1 SV=1
Length = 410
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 164 EDEIEAREIADSYANNARIIEKQLERKGM 192
E + E RE D Y NARII + LER G+
Sbjct: 309 EGQREIRESIDYYMENARIIRESLERAGL 337
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,964,667
Number of Sequences: 539616
Number of extensions: 3387011
Number of successful extensions: 9605
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 9552
Number of HSP's gapped (non-prelim): 43
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)