Query psy2469
Match_columns 220
No_of_seqs 94 out of 109
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 17:03:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2469.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2469hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x6m_A GFA, glutathione-depend 91.7 0.51 1.8E-05 39.1 7.3 46 87-132 97-146 (196)
2 3fac_A Putative uncharacterize 91.2 0.41 1.4E-05 36.2 5.7 31 87-117 66-96 (118)
3 1yop_A KTI11P; zinc finger, me 79.5 0.9 3.1E-05 33.9 2.1 25 21-45 16-40 (83)
4 3mao_A Methionine-R-sulfoxide 73.3 17 0.00059 28.1 7.9 88 18-119 3-96 (105)
5 2h9z_A Hypothetical protein HP 65.6 3.3 0.00011 30.4 2.3 25 145-169 47-71 (86)
6 3cxk_A Methionine-R-sulfoxide 55.9 44 0.0015 27.7 7.6 87 19-119 64-157 (164)
7 3hcj_A MSRB, peptide methionin 53.0 66 0.0023 26.4 8.2 88 19-120 41-134 (154)
8 1wge_A Hypothetical protein 26 52.3 4.9 0.00017 29.9 1.2 25 21-45 23-47 (83)
9 2jr7_A DPH3 homolog; DESR1, CS 52.0 5.6 0.00019 30.0 1.5 25 21-45 16-40 (89)
10 1rwu_A Hypothetical UPF0250 pr 51.5 12 0.00042 28.7 3.4 27 143-169 68-94 (109)
11 2kv1_A Methionine-R-sulfoxide 49.4 25 0.00086 28.0 5.0 87 20-119 12-103 (124)
12 2k8d_A Peptide methionine sulf 48.3 34 0.0012 28.0 5.7 85 19-119 52-144 (151)
13 2kao_A Methionine-R-sulfoxide 44.8 34 0.0012 27.2 5.1 88 18-119 10-103 (124)
14 3lrr_A Probable ATP-dependent 40.3 6.5 0.00022 31.0 0.2 21 84-104 1-21 (121)
15 3e0o_A Peptide methionine sulf 40.1 1.3E+02 0.0044 24.4 7.9 86 19-119 33-124 (144)
16 2lo3_A SAGA-associated factor 37.5 9.5 0.00033 25.5 0.7 20 82-101 10-30 (44)
17 1dxg_A Desulforedoxin; non-hem 37.5 19 0.00064 22.3 2.0 18 24-41 2-20 (36)
18 3e0m_A Peptide methionine sulf 25.7 2E+02 0.0067 26.0 7.4 85 19-119 200-293 (313)
19 4a2v_A RIG-I, retinoic acid in 25.4 17 0.00059 29.0 0.4 21 84-104 3-23 (131)
20 2k4x_A 30S ribosomal protein S 24.5 21 0.0007 24.3 0.6 15 88-102 36-50 (55)
21 2hba_A BL17, 50S ribosomal pro 24.2 19 0.00064 24.5 0.3 27 139-179 2-28 (52)
22 3fnv_A CDGSH iron sulfur domai 23.9 35 0.0012 25.6 1.8 19 14-35 33-51 (83)
23 3j20_Y 30S ribosomal protein S 23.2 27 0.00093 23.2 1.0 13 87-99 36-48 (50)
24 3u5c_f 40S ribosomal protein S 21.5 23 0.0008 28.2 0.5 17 84-100 134-150 (152)
25 3mhs_E SAGA-associated factor 20.9 21 0.00071 27.4 0.0 21 81-101 67-88 (96)
No 1
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=91.66 E-value=0.51 Score=39.12 Aligned_cols=46 Identities=15% Similarity=0.442 Sum_probs=28.6
Q ss_pred hcccCCccceeeEEeeCCC-CC---EEEEEcCceeeccCCCCchhhhhhh
Q psy2469 87 HRFKCKKCGLFLYYKHDPS-SN---IIFIVQGAVVKSSGEMPKMDIYNQV 132 (220)
Q Consensus 87 ~R~~C~rCgLpl~Y~~~~~-~~---~~YIl~GALv~~~g~~~~~~~~~~~ 132 (220)
.|.-|+.||-+|+|+.... .+ +++|--|.|-......|...||...
T Consensus 97 ~r~FC~~CGs~l~~~~~~~~~~~~~~~~V~~g~lD~~~~~~P~~hif~~s 146 (196)
T 1x6m_A 97 QRHRCRDCGVHMYGRIENRDHPFYGLDFVHTELSDEDGWSAPEFAAFVSS 146 (196)
T ss_dssp EEEEETTTCCEEEEEECCTTSTTTTEEEECGGGBSCCCCCCCCEEESGGG
T ss_pred eeEECCCCCCcCCcccccCCCCccceEEEEEeccCCcccCCCeEEEEecc
Confidence 4667999999999998752 22 5666556544332223555666443
No 2
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=91.16 E-value=0.41 Score=36.18 Aligned_cols=31 Identities=10% Similarity=0.334 Sum_probs=23.8
Q ss_pred hcccCCccceeeEEeeCCCCCEEEEEcCcee
Q psy2469 87 HRFKCKKCGLFLYYKHDPSSNIIFIVQGAVV 117 (220)
Q Consensus 87 ~R~~C~rCgLpl~Y~~~~~~~~~YIl~GALv 117 (220)
.|.-|+.||-+|+|+....+.+++|--|.|-
T Consensus 66 ~r~FC~~CGs~l~~~~~~~~~~~~V~~g~ld 96 (118)
T 3fac_A 66 KHWFCRTCGIYTHHQRRSNPEEYGVNVAILE 96 (118)
T ss_dssp EEEEETTTCCEEEEECSSCTTEEEEEGGGBT
T ss_pred eeEECCCCCccccCccCCCCCEEEEEecccC
Confidence 4667999999999998766677776666653
No 3
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=79.54 E-value=0.9 Score=33.90 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.7
Q ss_pred CCCCceeEEEeccCCeeeeeecccc
Q psy2469 21 GEEKPLHIYYCVCGQMTLILDCAVE 45 (220)
Q Consensus 21 ~~e~~L~vYyClCG~~~Li~d~~Le 45 (220)
+.+...+.|-|.||....|+...|+
T Consensus 16 de~~~~y~ypCrCGd~F~it~edL~ 40 (83)
T 1yop_A 16 EPENQMFTYPCPCGDRFQIYLDDMF 40 (83)
T ss_dssp ETTTTEEEEEETTTEEEEEEHHHHH
T ss_pred cCCCCEEEEeCCCCCeEEECHHHHh
Confidence 5667789999999999999998885
No 4
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=73.32 E-value=17 Score=28.11 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=52.4
Q ss_pred hccCCCCceeEEEe-ccCCeeeeeecccccCCCCCCCCeeEecCCCceeeeeccCCceEEEeCCC-cchhhhcccCCccc
Q psy2469 18 EEYGEEKPLHIYYC-VCGQMTLILDCAVEKLPLRRRDGARVIDGPKHAHKLTCEPDEVFHLKRPE-GIERQHRFKCKKCG 95 (220)
Q Consensus 18 eey~~e~~L~vYyC-lCG~~~Li~d~~Le~LP~RktD~A~Vld~~kh~~Kl~~~~~~~v~IrR~~-GiEkQ~R~~C~rCg 95 (220)
|+|.....--+|+| .||.-+.-++...++= + |=--+.. ..+++.|-.+... ++ .+--.+|.+|+
T Consensus 3 e~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg----~-GWPSF~~--------pi~~~~v~~~~D~~~~-~RtEV~C~~C~ 68 (105)
T 3mao_A 3 EVFQNHFEPGVYVCAKCGYELFSSRSKYAHS----S-PWPAFTE--------TIHADSVAKRPEHNRS-EALKVSCGKCG 68 (105)
T ss_dssp CCCTTCCCSEEEEETTTCCEEEEGGGEECCS----S-SSCEESC--------CSSTTSEEEEECTTST-TEEEEEETTTC
T ss_pred ccccCCCCCEEEEcCCCCCccccCCcccCCC----C-CChhhcc--------ccCCCceEEEecCCCC-CEEEEEeCCCC
Confidence 77878888899999 7998888887665431 0 0000000 0111122222221 32 23457899999
Q ss_pred eeeEEeeCCC----CCEEEEEcCceeec
Q psy2469 96 LFLYYKHDPS----SNIIFIVQGAVVKS 119 (220)
Q Consensus 96 Lpl~Y~~~~~----~~~~YIl~GALv~~ 119 (220)
-.||+.-.++ ...-|-+++|-+.+
T Consensus 69 ~HLGHVF~~DGP~ptg~RyCiNS~sL~F 96 (105)
T 3mao_A 69 NGLGHEFLNDGPKPGQSRFSIFSSSLKF 96 (105)
T ss_dssp CEEEEEETTCSSSTTCCEEEECGGGEEE
T ss_pred CccCcccCCCCcCCCCCEEeeCeeeEEe
Confidence 9999987332 33568888877766
No 5
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=65.56 E-value=3.3 Score=30.38 Aligned_cols=25 Identities=32% Similarity=0.278 Sum_probs=21.6
Q ss_pred eeeccCceeeeEeecccchhhHHHH
Q psy2469 145 HTKNMGKFSSVTVSTIDEEEDEIEA 169 (220)
Q Consensus 145 ~tk~~GkfssvTvsTideeEdEiea 169 (220)
|.-..|||-||||+..=+.+|+++|
T Consensus 47 r~Ss~GkY~Svtv~i~a~s~eq~~~ 71 (86)
T 2h9z_A 47 NTSKNAKFYSFNVSMEVSNESERNE 71 (86)
T ss_dssp CSSCCSSCEEEEEEEECCSHHHHHH
T ss_pred ccCCCCeEEEEEEEEEECCHHHHHH
Confidence 5557799999999999989988876
No 6
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=55.87 E-value=44 Score=27.73 Aligned_cols=87 Identities=21% Similarity=0.343 Sum_probs=50.8
Q ss_pred ccCCCCceeEEEe-ccCCeeeeeecccccCCCCCCCCeeEecCCCceeeeeccCCceEEEeCC--CcchhhhcccCCccc
Q psy2469 19 EYGEEKPLHIYYC-VCGQMTLILDCAVEKLPLRRRDGARVIDGPKHAHKLTCEPDEVFHLKRP--EGIERQHRFKCKKCG 95 (220)
Q Consensus 19 ey~~e~~L~vYyC-lCG~~~Li~d~~Le~LP~RktD~A~Vld~~kh~~Kl~~~~~~~v~IrR~--~GiEkQ~R~~C~rCg 95 (220)
+|.....--+|+| .||.-+.-++...++= + |=--+.. ..+++.|-.+.. -|+ .+--.+|.+|+
T Consensus 64 ~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSG----c-GWPSF~~--------pi~~~~V~~~~D~s~gm-~RtEV~C~~Cg 129 (164)
T 3cxk_A 64 EYTDTEDAGIYHCVVCGTALFESGAKYHSG----C-GWPSYFK--------PIDGEVIDEKMDYTHGM-TRVEVRCNQCG 129 (164)
T ss_dssp TTTTCCCSEEEEETTTCCEEEEGGGBCCCC----S-SSCEESS--------CSSTTSEEEEEECGGGC-CEEEEEETTTC
T ss_pred cccccCCCeEEEccCCCccccCCchhccCC----C-CCcccCc--------ccCCCceEEeECCCCCc-EEEEEEeCCCC
Confidence 5556667789999 7999888887665541 0 0000000 001112221211 233 34457899999
Q ss_pred eeeEEeeCCCC----CEEEEEcCceeec
Q psy2469 96 LFLYYKHDPSS----NIIFIVQGAVVKS 119 (220)
Q Consensus 96 Lpl~Y~~~~~~----~~~YIl~GALv~~ 119 (220)
-.||+.-+..+ ..-|-+++|-+.+
T Consensus 130 ~HLGHVF~DGP~~ptg~RyCINS~sL~F 157 (164)
T 3cxk_A 130 AHLGHVFEDGPRDKTGLRYCINSAALNF 157 (164)
T ss_dssp CEEEEEESCSCTTTTSCEEEECGGGEEE
T ss_pred CccCcccCCCCCCCCCCEEeeceeeEee
Confidence 99999876422 3568888877766
No 7
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=53.00 E-value=66 Score=26.42 Aligned_cols=88 Identities=11% Similarity=0.144 Sum_probs=52.1
Q ss_pred ccCCCCceeEEEe-ccCCeeeeeecccccCCCCCCCCeeEecCCCceeeeeccCCceEEEeCCC--cchhhhcccCCccc
Q psy2469 19 EYGEEKPLHIYYC-VCGQMTLILDCAVEKLPLRRRDGARVIDGPKHAHKLTCEPDEVFHLKRPE--GIERQHRFKCKKCG 95 (220)
Q Consensus 19 ey~~e~~L~vYyC-lCG~~~Li~d~~Le~LP~RktD~A~Vld~~kh~~Kl~~~~~~~v~IrR~~--GiEkQ~R~~C~rCg 95 (220)
+|.....--+|+| .||.-+.-++...++=- ..-.|- ...+++.|.-++.. |+ .+--..|.+|+
T Consensus 41 ~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~------------GWPSF~-~pi~~~~v~~~~D~s~gm-~RtEV~C~~Cg 106 (154)
T 3hcj_A 41 VFLDNKLDGVYTCRLCGLPLFRSNAKFDSGT------------GWPSFF-APYDPAHVREIRDTSYGM-IRTEIVCARCD 106 (154)
T ss_dssp CCCSSCSSEEEEETTTCCEEEEECTTCCCCT------------TSSTTE-EESCGGGEEEECCTTTTT-SCEEEEETTTC
T ss_pred CCCCCCCCEEEEccCCCCccccCcccccCCC------------CCcccc-cccCccceEEeecCCCCc-eEEEEEeCCCC
Confidence 4556677789999 79988888876654210 000000 01122223333322 43 24457899999
Q ss_pred eeeEEeeCC---CCCEEEEEcCceeecc
Q psy2469 96 LFLYYKHDP---SSNIIFIVQGAVVKSS 120 (220)
Q Consensus 96 Lpl~Y~~~~---~~~~~YIl~GALv~~~ 120 (220)
-.||+.-+. ....-|-+++|-+.+.
T Consensus 107 ~HLGHVF~DGP~ptg~RyCiNS~sL~F~ 134 (154)
T 3hcj_A 107 SHLGHVFPDGPPPTGERHCLNSVSLAFT 134 (154)
T ss_dssp CEEEEEESCSCTTTTCEEEECGGGEEEE
T ss_pred CccCCccCCCCCCCCCEeeeceeeEEee
Confidence 999997654 2346688888877763
No 8
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=52.33 E-value=4.9 Score=29.85 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=21.8
Q ss_pred CCCCceeEEEeccCCeeeeeecccc
Q psy2469 21 GEEKPLHIYYCVCGQMTLILDCAVE 45 (220)
Q Consensus 21 ~~e~~L~vYyClCG~~~Li~d~~Le 45 (220)
+.+...+.|-|.||....|+...|+
T Consensus 23 de~~~~y~y~CrCGd~F~it~edL~ 47 (83)
T 1wge_A 23 DEDSETYFYPCPCGDNFAITKEDLE 47 (83)
T ss_dssp BTTTTEEEECCSSSSCEEEEHHHHH
T ss_pred ccCCCEEEEeCCCCCEEEECHHHHh
Confidence 5667789999999999999988886
No 9
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=52.00 E-value=5.6 Score=30.00 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.8
Q ss_pred CCCCceeEEEeccCCeeeeeecccc
Q psy2469 21 GEEKPLHIYYCVCGQMTLILDCAVE 45 (220)
Q Consensus 21 ~~e~~L~vYyClCG~~~Li~d~~Le 45 (220)
+.+...+.|-|.||....|+...|+
T Consensus 16 de~~~~y~ypCrCGd~F~IteedLe 40 (89)
T 2jr7_A 16 DEDSETYFYPCPCGDNFSITKEDLE 40 (89)
T ss_dssp ETTTTEEEEECTTSSEEEEEHHHHH
T ss_pred cCCCCEEEEcCCCCCEEEECHHHHh
Confidence 5666789999999999999988887
No 10
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=51.48 E-value=12 Score=28.72 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=22.8
Q ss_pred EeeeeccCceeeeEeecccchhhHHHH
Q psy2469 143 TKHTKNMGKFSSVTVSTIDEEEDEIEA 169 (220)
Q Consensus 143 tk~tk~~GkfssvTvsTideeEdEiea 169 (220)
+-|.-..|||-||||+..=+.+|+++|
T Consensus 68 ~~r~Ss~GkY~Svtv~v~v~S~eQv~a 94 (109)
T 1rwu_A 68 TVKPSSKGNYHSVSITINATHIEQVET 94 (109)
T ss_dssp EEEESSCSSEEEEEEEECCSSHHHHHH
T ss_pred eecCCCCCeEEEEEEEEEECCHHHHHH
Confidence 447778899999999988888888776
No 11
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=49.38 E-value=25 Score=27.99 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=45.9
Q ss_pred cCCCCceeEEEe-ccCCeeeeeecccccCCCCCCCCeeEecCCCceeeeeccCCceEEEeCCCcchhhhcccCCccceee
Q psy2469 20 YGEEKPLHIYYC-VCGQMTLILDCAVEKLPLRRRDGARVIDGPKHAHKLTCEPDEVFHLKRPEGIERQHRFKCKKCGLFL 98 (220)
Q Consensus 20 y~~e~~L~vYyC-lCG~~~Li~d~~Le~LP~RktD~A~Vld~~kh~~Kl~~~~~~~v~IrR~~GiEkQ~R~~C~rCgLpl 98 (220)
|+....--+|.| .||.-+.-++...++=-= .-.+---..++....+....|.+ +-...|.+|+-.|
T Consensus 12 y~~~~e~G~Y~C~~Cg~pLF~S~~KfdSg~G------------WPSF~~~i~~~~v~~~~d~~~~~-r~Ev~C~~Cg~HL 78 (124)
T 2kv1_A 12 FQNHFEPGVYVCAKCSYELFSSHSKYAHSSP------------WPAFTETIHPDSVTKCPEKNRPE-ALKVSCGKCGNGL 78 (124)
T ss_dssp GGGTTCCEEEEETTTCCBCCCTTSCCCCCSS------------SCCBSCCCCCSSCEEEECSSSTT-CEEEECTTTTCCC
T ss_pred ccCCCCCEEEEecCCCCcccccCCcccCCCC------------CceeecccccceEEEEeccCCce-EEEEEEecCCCcc
Confidence 455556689999 699877766665543100 00000000111111222222332 2346799999999
Q ss_pred EEeeCCC----CCEEEEEcCceeec
Q psy2469 99 YYKHDPS----SNIIFIVQGAVVKS 119 (220)
Q Consensus 99 ~Y~~~~~----~~~~YIl~GALv~~ 119 (220)
|..-.++ ...-|-+++|-+.+
T Consensus 79 GHVF~~DGP~ptg~RyCINS~sL~F 103 (124)
T 2kv1_A 79 GHEFLNDGPKRGQSRFCIFSSSLKF 103 (124)
T ss_dssp EEECTTSCTTTTCSCEECCTTTEEE
T ss_pred CCccCCCCCCCCCCEEeecceeeEe
Confidence 9986332 22347777766665
No 12
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=48.28 E-value=34 Score=28.03 Aligned_cols=85 Identities=18% Similarity=0.321 Sum_probs=49.0
Q ss_pred ccCCCCceeEEEe-ccCCeeeeeecccccCCCCCCCCeeEecCCCceeeeeccC--CceEEEeCCC--cchhhhcccCCc
Q psy2469 19 EYGEEKPLHIYYC-VCGQMTLILDCAVEKLPLRRRDGARVIDGPKHAHKLTCEP--DEVFHLKRPE--GIERQHRFKCKK 93 (220)
Q Consensus 19 ey~~e~~L~vYyC-lCG~~~Li~d~~Le~LP~RktD~A~Vld~~kh~~Kl~~~~--~~~v~IrR~~--GiEkQ~R~~C~r 93 (220)
+|.....--+|+| .||.-+.-++...++=- |=-- +..+ ++.|..+... |+ .+--.+|.+
T Consensus 52 ~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~-----GWPS----------F~~pi~~~~V~~~~D~s~gm-~RtEV~C~~ 115 (151)
T 2k8d_A 52 KYHDLHDDGIYRCICCGTDLFDSETKFDSGT-----GWPS----------FYDVVSEHNIKLREDRSLGM-VRCEVLCAR 115 (151)
T ss_dssp CCCCCCSCSEEEETTTTEEEEEGGGSCCSTT-----CCSE----------ESCCSCTTSEECCCCBTTSS-CEEEEEETT
T ss_pred CCcCCCCCEEEEecCCCCcccCCcccccCCC-----CCcc----------cCcccCCCceEEeeCCCCCc-eEEEEEeCC
Confidence 3445566679999 79988887776554310 0000 1111 1111111111 22 234478999
Q ss_pred cceeeEEeeCC---CCCEEEEEcCceeec
Q psy2469 94 CGLFLYYKHDP---SSNIIFIVQGAVVKS 119 (220)
Q Consensus 94 CgLpl~Y~~~~---~~~~~YIl~GALv~~ 119 (220)
|+-.||+.-+. ....-|-+++|-+.+
T Consensus 116 Cg~HLGHVF~DGP~ptg~RyCINS~sL~F 144 (151)
T 2k8d_A 116 CDAHLGHVFDDGPRPTGKRYCMNSAALKF 144 (151)
T ss_dssp EEEEEEEEEECSSSSSCEEEEECSTTEEE
T ss_pred CCCcCCcccCCCCCCCCCEEeeceeeecc
Confidence 99999997754 234668888887776
No 13
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=44.78 E-value=34 Score=27.19 Aligned_cols=88 Identities=13% Similarity=0.113 Sum_probs=48.8
Q ss_pred hccCCCCceeEEEe-ccCCeeeeeecccccCCCCCCCCeeEecCCCceeeeeccCCceEEEeCCC-cchhhhcccCCccc
Q psy2469 18 EEYGEEKPLHIYYC-VCGQMTLILDCAVEKLPLRRRDGARVIDGPKHAHKLTCEPDEVFHLKRPE-GIERQHRFKCKKCG 95 (220)
Q Consensus 18 eey~~e~~L~vYyC-lCG~~~Li~d~~Le~LP~RktD~A~Vld~~kh~~Kl~~~~~~~v~IrR~~-GiEkQ~R~~C~rCg 95 (220)
|.|.....--+|.| .||.-+.-++...++=- |=--+.. ..+++.|-.++.+ ++ .+--.+|.+|+
T Consensus 10 e~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSG~-----GWPSF~~--------pi~~~~v~~~~D~~~~-~RtEV~C~~Cg 75 (124)
T 2kao_A 10 EVFQNHFEPGVYVCAKCSYELFSSHSKYAHSS-----PWPAFTE--------TIHPDSVTKCPEKNRP-EALKVSCGKCG 75 (124)
T ss_dssp CTTTTCCCCCEEEESSSCCCCCCTTTSCCCCC-----SSCCBSC--------CCCCSSCEEEECSSCT-TCEEEECTTTT
T ss_pred ccccCCCCCEEEEeCCCCCccccCcccccCCC-----CChhhCc--------cCCccceEEEecCCCC-CEEEEEeCCCC
Confidence 45777777899999 69977766665544210 0000000 0111112212221 32 23557899999
Q ss_pred eeeEEeeCCC----CCEEEEEcCceeec
Q psy2469 96 LFLYYKHDPS----SNIIFIVQGAVVKS 119 (220)
Q Consensus 96 Lpl~Y~~~~~----~~~~YIl~GALv~~ 119 (220)
-.||+.-.++ ...-|-+++|-+.+
T Consensus 76 ~HLGHVF~~DGP~ptg~RyCINS~sL~F 103 (124)
T 2kao_A 76 NGLGHEFLNDGPKRGQSRFCIFSSSLKF 103 (124)
T ss_dssp CCCEEECCSSCSSSSCCCEECCSSSEEE
T ss_pred CcCCccCCCCCcCCCCCEeeeCeEEEEe
Confidence 9999987322 22447777776666
No 14
>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*
Probab=40.27 E-value=6.5 Score=31.03 Aligned_cols=21 Identities=24% Similarity=0.673 Sum_probs=18.6
Q ss_pred hhhhcccCCccceeeEEeeCC
Q psy2469 84 ERQHRFKCKKCGLFLYYKHDP 104 (220)
Q Consensus 84 EkQ~R~~C~rCgLpl~Y~~~~ 104 (220)
+..|++.|+.|..+++|-.|-
T Consensus 1 ~~~~~llC~kC~~~~C~g~DI 21 (121)
T 3lrr_A 1 KENKKLLCRKCKALACYTADV 21 (121)
T ss_dssp CCCEEEEETTTCCEEEEGGGE
T ss_pred CCCEEEECCCCCeEEEeccce
Confidence 467999999999999998875
No 15
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=40.05 E-value=1.3e+02 Score=24.39 Aligned_cols=86 Identities=13% Similarity=0.157 Sum_probs=48.7
Q ss_pred ccCCCCceeEEEe-ccCCeeeeeecccccCCCCCCCCeeEecCCCceeeeeccCCceEEEe--CCCcchhhhcccCCccc
Q psy2469 19 EYGEEKPLHIYYC-VCGQMTLILDCAVEKLPLRRRDGARVIDGPKHAHKLTCEPDEVFHLK--RPEGIERQHRFKCKKCG 95 (220)
Q Consensus 19 ey~~e~~L~vYyC-lCG~~~Li~d~~Le~LP~RktD~A~Vld~~kh~~Kl~~~~~~~v~Ir--R~~GiEkQ~R~~C~rCg 95 (220)
+|.....--+|+| .||.-+.-++...++= + |=--+.. ..++ .|.-+ +.-|+ .+--.+|.+|+
T Consensus 33 ~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg----~-GWPSF~~--------pi~~-~v~~~~D~s~gm-~RtEV~C~~Cg 97 (144)
T 3e0o_A 33 EYWDHKEEGLYVDIVSGKPLFTSKDKFDSQ----C-GWPSFTK--------PIEE-EVEEKLDTSHGM-IRTEVRSRTAD 97 (144)
T ss_dssp TTSSCCCSEEEEETTTCCEEEETTTBCCCT----T-SSCEESC--------CSTT-TEEEEEECCTTS-CEEEEEETTTC
T ss_pred CCCCcCCCEEEEeCCCCcccccCcccccCC----C-CCcccCc--------hhcc-ceEEeecCCCCc-eEEEEEcCCCC
Confidence 5556667789999 7998888777665531 0 0000000 0011 11111 11243 23447899999
Q ss_pred eeeEEeeCC---CCCEEEEEcCceeec
Q psy2469 96 LFLYYKHDP---SSNIIFIVQGAVVKS 119 (220)
Q Consensus 96 Lpl~Y~~~~---~~~~~YIl~GALv~~ 119 (220)
-.||+.-+. ....-|-+++|-+.+
T Consensus 98 ~HLGHVF~DGP~ptg~RyCiNS~sL~F 124 (144)
T 3e0o_A 98 SHLGHVFNDGPGPNGLRYCINSAALRF 124 (144)
T ss_dssp CEEEEEESCCSSTTCCEEEECGGGEEE
T ss_pred CccCCccCCCCCCCCCEeeeceeeEee
Confidence 999997654 233558888776665
No 16
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=37.49 E-value=9.5 Score=25.52 Aligned_cols=20 Identities=25% Similarity=0.652 Sum_probs=14.5
Q ss_pred cchhhhcc-cCCccceeeEEe
Q psy2469 82 GIERQHRF-KCKKCGLFLYYK 101 (220)
Q Consensus 82 GiEkQ~R~-~C~rCgLpl~Y~ 101 (220)
-+|++.++ .|..||-||.|.
T Consensus 10 ple~~~~YRvC~~CgkPi~ls 30 (44)
T 2lo3_A 10 PLDKPIQYRVCEKCGKPLALT 30 (44)
T ss_dssp CCCCCCCEEECTTTCCEEETT
T ss_pred ccCccccchhhcccCCcchHH
Confidence 35665553 599999999874
No 17
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=37.46 E-value=19 Score=22.28 Aligned_cols=18 Identities=33% Similarity=0.898 Sum_probs=14.4
Q ss_pred CceeEEEe-ccCCeeeeee
Q psy2469 24 KPLHIYYC-VCGQMTLILD 41 (220)
Q Consensus 24 ~~L~vYyC-lCG~~~Li~d 41 (220)
+.+..|.| .||..+.++.
T Consensus 2 k~~~fY~C~~CGnivev~~ 20 (36)
T 1dxg_A 2 NEGDVYKCELCGQVVKVLE 20 (36)
T ss_dssp CTTCEEECTTTCCEEEEEE
T ss_pred CcccEEEcCCCCcEEEEEe
Confidence 34678999 8999998854
No 18
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=25.70 E-value=2e+02 Score=26.02 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=49.7
Q ss_pred ccCCCCceeEEEe-ccCCeeeeeecccccCCCCCCCCeeEecCCCceeeeeccC--CceEEEe--CCCcchhhhcccCCc
Q psy2469 19 EYGEEKPLHIYYC-VCGQMTLILDCAVEKLPLRRRDGARVIDGPKHAHKLTCEP--DEVFHLK--RPEGIERQHRFKCKK 93 (220)
Q Consensus 19 ey~~e~~L~vYyC-lCG~~~Li~d~~Le~LP~RktD~A~Vld~~kh~~Kl~~~~--~~~v~Ir--R~~GiEkQ~R~~C~r 93 (220)
+|.....--+|.| .||.-+.-++...++=- |=-- +..+ .+.|--+ +.-|+. +--.+|.+
T Consensus 200 ~y~~~~~~G~Y~c~~cg~pLF~S~~KfdSg~-----GWPS----------F~~~i~~~~v~~~~D~s~gm~-RtEv~c~~ 263 (313)
T 3e0m_A 200 AYDQTFEEGIYVDITTGEPLFFAKDKFASGC-----GWPS----------FSRPLSKELIHYYKDLSHGME-RIEVRSRS 263 (313)
T ss_dssp TTTTCCCSEEEEETTTCCEEEEGGGBCCCCS-----SSCE----------ESSCSSGGGEEEEEECCTTCC-EEEEEESS
T ss_pred CCCCCCCCeEEEecCCCccccCCCccccCCC-----CCcc----------cCcccCCCceEEeecCCCCcE-EEEEECCC
Confidence 5656667789999 79988888776554210 0000 1111 1112111 122442 34478999
Q ss_pred cceeeEEeeCCC----CCEEEEEcCceeec
Q psy2469 94 CGLFLYYKHDPS----SNIIFIVQGAVVKS 119 (220)
Q Consensus 94 CgLpl~Y~~~~~----~~~~YIl~GALv~~ 119 (220)
|+-.||+.-+.. ...-|-+++|-+.+
T Consensus 264 c~~HLGHVF~DGp~~ptg~RyCiNs~sL~F 293 (313)
T 3e0m_A 264 GSAHLGHVFTDGPRELGGLRYCINSASLRF 293 (313)
T ss_dssp SCCEEEEEESCSCTTTTSCEEEECGGGEEE
T ss_pred CCCccCcccCCCCCCCCCCEEeeceeeEee
Confidence 999999976431 23568888877766
No 19
>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A
Probab=25.37 E-value=17 Score=29.02 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=17.5
Q ss_pred hhhhcccCCccceeeEEeeCC
Q psy2469 84 ERQHRFKCKKCGLFLYYKHDP 104 (220)
Q Consensus 84 EkQ~R~~C~rCgLpl~Y~~~~ 104 (220)
-+.|++.|+.|..+++|-.|-
T Consensus 3 ~~~~kllCrkC~~~vC~g~DI 23 (131)
T 4a2v_A 3 MGQKNLLCGKCKAYACSTDDI 23 (131)
T ss_dssp --CCEEEETTTCCEEEEGGGE
T ss_pred CcceEEEccCCCeeEEeccce
Confidence 357999999999999998875
No 20
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=24.53 E-value=21 Score=24.29 Aligned_cols=15 Identities=33% Similarity=0.922 Sum_probs=12.5
Q ss_pred cccCCccceeeEEee
Q psy2469 88 RFKCKKCGLFLYYKH 102 (220)
Q Consensus 88 R~~C~rCgLpl~Y~~ 102 (220)
|+.|++|++..+|+.
T Consensus 36 r~~C~kCgyt~~~~~ 50 (55)
T 2k4x_A 36 RYSCGRCGYTEFKKA 50 (55)
T ss_dssp EEECTTTCCCEECCC
T ss_pred EEECCCCCCEEEeCc
Confidence 899999999877653
No 21
>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A
Probab=24.17 E-value=19 Score=24.51 Aligned_cols=27 Identities=44% Similarity=0.757 Sum_probs=22.4
Q ss_pred eEEEEeeeeccCceeeeEeecccchhhHHHHHHHHHHhhhh
Q psy2469 139 KIMVTKHTKNMGKFSSVTVSTIDEEEDEIEAREIADSYANN 179 (220)
Q Consensus 139 kvm~tk~tk~~GkfssvTvsTideeEdEieareiadsYa~N 179 (220)
||+.++.+++.|+-+.| -+|+|-||.|
T Consensus 2 kVIL~~dV~~lG~~Gdv--------------v~V~~GYaRN 28 (52)
T 2hba_A 2 KVIFLKDVKGMGKKGEI--------------KNVADGYANN 28 (52)
T ss_dssp EEEESSCBTTTBCTTCE--------------EECCHHHHHH
T ss_pred EEEEcccccccCcCCCE--------------EEEcCCceeh
Confidence 68899999999988764 3678899987
No 22
>3fnv_A CDGSH iron sulfur domain-containing protein 2; diabetes, membrane bound, thiazolidinedione, oxidative stres endoplasmic reticulum, membrane; 2.10A {Homo sapiens}
Probab=23.87 E-value=35 Score=25.56 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=11.4
Q ss_pred ccchhccCCCCceeEEEeccCC
Q psy2469 14 TKDKEEYGEEKPLHIYYCVCGQ 35 (220)
Q Consensus 14 t~d~eey~~e~~L~vYyClCG~ 35 (220)
+-|-|+...+ .++||.|++
T Consensus 33 ~~diedl~~~---k~~~CrC~~ 51 (83)
T 3fnv_A 33 EINIEDLSLT---KAAYCRCWR 51 (83)
T ss_dssp EEEGGGCCSS---EEEECSSSC
T ss_pred eechhhccCC---CEEEEeCCC
Confidence 3355555322 368999993
No 23
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.20 E-value=27 Score=23.23 Aligned_cols=13 Identities=38% Similarity=1.002 Sum_probs=9.4
Q ss_pred hcccCCccceeeE
Q psy2469 87 HRFKCKKCGLFLY 99 (220)
Q Consensus 87 ~R~~C~rCgLpl~ 99 (220)
-|+.|++||+..+
T Consensus 36 ~R~~C~kCG~t~~ 48 (50)
T 3j20_Y 36 DRWACGKCGYTEW 48 (50)
T ss_dssp SEEECSSSCCEEE
T ss_pred CeEECCCCCCEEE
Confidence 3788998887643
No 24
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=21.53 E-value=23 Score=28.21 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=11.3
Q ss_pred hhhhcccCCccceeeEE
Q psy2469 84 ERQHRFKCKKCGLFLYY 100 (220)
Q Consensus 84 EkQ~R~~C~rCgLpl~Y 100 (220)
+--=|+.|++|++..+|
T Consensus 134 ~h~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 134 NHKDRLYCGKCHSVYKV 150 (152)
T ss_dssp ECSSCEEESSSSSCCEE
T ss_pred ccCCCcccCCCceEEEe
Confidence 33347788888876655
No 25
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=20.92 E-value=21 Score=27.43 Aligned_cols=21 Identities=24% Similarity=0.664 Sum_probs=14.6
Q ss_pred Ccchhhhcc-cCCccceeeEEe
Q psy2469 81 EGIERQHRF-KCKKCGLFLYYK 101 (220)
Q Consensus 81 ~GiEkQ~R~-~C~rCgLpl~Y~ 101 (220)
+.+|....+ .|..||-||.+.
T Consensus 67 ~~Ld~~~~YRvCn~CGkPI~l~ 88 (96)
T 3mhs_E 67 DPLDKPIQYRVCEKCGKPLALT 88 (96)
T ss_dssp STTSSSCCCEEETTTCCEECGG
T ss_pred ccCCCcccchhhhccCCceeHH
Confidence 356655443 499999999764
Done!