RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2469
         (220 letters)



>d1x6ma_ b.88.1.4 (A:) Glutathione-dependent formaldehyde-activating
           enzyme, Gfa {Paracoccus denitrificans [TaxId: 266]}
          Length = 196

 Score = 30.0 bits (67), Expect = 0.13
 Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 17/112 (15%)

Query: 22  EEKPLHIYYCVCGQMTLILDCAVEKLPLRRRDGARVIDGPKHAHKLTCEPDEVFHLKRPE 81
             +  H + C C +          ++ +  RD   V++G +    +  E           
Sbjct: 45  RAQTAHNHVCGCTKCWKPEGAIFSQVAVVGRDALEVLEGAEKLEIVNAEA---------- 94

Query: 82  GIERQHRFKCKKCGLFLYYKHD----PSSNIIFIVQGAVVKSSGEMPKMDIY 129
                 R +C+ CG+ +Y + +    P   + F+      +     P+   +
Sbjct: 95  ---PIQRHRCRDCGVHMYGRIENRDHPFYGLDFVHTELSDEDGWSAPEFAAF 143


>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus
           subtilis [TaxId: 1423]}
          Length = 330

 Score = 28.7 bits (63), Expect = 0.59
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 27  HIYYCVCGQMTLILDCAVEKLPLRRRDGARVIDGPKHAHKLTCEPDEVFHLKRPEGIER 85
             +YC+ GQMT+  D   +++ L   D   V     H+++L     ++  +  P   E 
Sbjct: 237 ETFYCLEGQMTMWTDG--QEIQLNPGDFLHVPANTVHSYRLDSHYTKMVGVLVPGLFEP 293


>d1rwua_ d.58.54.1 (A:) Hypothetical protein ybeD {Escherichia coli
           [TaxId: 562]}
          Length = 87

 Score = 24.0 bits (52), Expect = 7.6
 Identities = 6/33 (18%), Positives = 14/33 (42%)

Query: 137 PKKIMVTKHTKNMGKFSSVTVSTIDEEEDEIEA 169
           P     T    + G + SV+++      +++E 
Sbjct: 40  PGDYTPTVKPSSKGNYHSVSITINATHIEQVET 72


>d2joqa1 d.58.54.2 (A:4-89) Hypothetical protein HP0495
           {Helicobacter pylori [TaxId: 210]}
          Length = 86

 Score = 24.0 bits (52), Expect = 7.8
 Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 1/39 (2%)

Query: 131 QVAVAKPKKIMVTKHTKNMGKFSSVTVSTIDEEEDEIEA 169
                +P K+     +KN  KF S  VS     E E   
Sbjct: 34  LETYQRPFKLEFKNTSKN-AKFYSFNVSMEVSNESERNE 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0617    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 813,398
Number of extensions: 39084
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 13
Length of query: 220
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,281,736
Effective search space: 176879568
Effective search space used: 176879568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)