BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy247
(413 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 132/440 (30%), Positives = 201/440 (45%), Gaps = 82/440 (18%)
Query: 7 YIFRQNTDFFYFTGCLEPDSAVVIHGASDENFKSELFVKRKDAKAELWDGPRTGK--AQL 64
Y +RQN+DF+YFTG EP++ +V+ + D + S LF + +D AE+W G R G+ A
Sbjct: 41 YPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPE 100
Query: 65 NGYVPRRKDYSWNVPKQLFHQLR----LYKSDSEQEMMRETCRIASEGFKETI--GFSKP 118
V R +S + +QL+ L +Y + E A E ++ + P
Sbjct: 101 KLGVDRALAFS-EINQQLYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAP 159
Query: 119 GRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNN---QKCCHGDLLLMDA 175
T D+ + ++ P +A A I + + +KC
Sbjct: 160 A-------TMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKC---------- 202
Query: 176 GFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLM 235
+PG E+ L + +E GA+ +Y +V SG+N ++HY N + GDL+L+
Sbjct: 203 ---RPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGENGCILHYTENEXEMRDGDLVLI 259
Query: 236 DAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSALNFIYRYAY 295
DAGCE GY DITRT+P++G+FT Q+ +Y+IVL++ L+L S L
Sbjct: 260 DAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVR 319
Query: 296 VFQIGF--------------------KFCPHHSSHYLGMDVHDCAAI--PRTIPVAPGVV 333
+ G F H SH+LG+DVHD R+ + PG+V
Sbjct: 320 IMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMV 379
Query: 334 FTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILID 393
TVEPG+ YI+ D E ++RG+GIRIEDDI+I
Sbjct: 380 LTVEPGL--------------------------YIAPDA-EVPEQYRGIGIRIEDDIVIT 412
Query: 394 KSSNVENLSAMCPKNIDEIE 413
++ N ENL+A K +EIE
Sbjct: 413 ETGN-ENLTASVVKKPEEIE 431
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 132/440 (30%), Positives = 201/440 (45%), Gaps = 82/440 (18%)
Query: 7 YIFRQNTDFFYFTGCLEPDSAVVIHGASDENFKSELFVKRKDAKAELWDGPRTGK--AQL 64
Y +RQN+DF+YFTG EP++ +V+ + D + S LF + +D AE+W G R G+ A
Sbjct: 41 YPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPE 100
Query: 65 NGYVPRRKDYSWNVPKQLFHQLR----LYKSDSEQEMMRETCRIASEGFKETI--GFSKP 118
V R +S + +QL+ L +Y + E A E ++ + P
Sbjct: 101 KLGVDRALAFS-EINQQLYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAP 159
Query: 119 GRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNN---QKCCHGDLLLMDA 175
T D+ + ++ P +A A I + + +KC
Sbjct: 160 A-------TMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKC---------- 202
Query: 176 GFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLM 235
+PG E+ L + +E GA+ +Y +V SG+N ++HY N + GDL+L+
Sbjct: 203 ---RPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGENGCILHYTENECEMRDGDLVLI 259
Query: 236 DAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSALNFIYRYAY 295
DAGCE GY DITRT+P++G+FT Q+ +Y+IVL++ L+L S L
Sbjct: 260 DAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVR 319
Query: 296 VFQIGF--------------------KFCPHHSSHYLGMDVHDCAAI--PRTIPVAPGVV 333
+ G F H SH+LG+DVHD R+ + PG+V
Sbjct: 320 IMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMV 379
Query: 334 FTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILID 393
TVEPG+ YI+ D E ++RG+GIRIEDDI+I
Sbjct: 380 LTVEPGL--------------------------YIAPDA-EVPEQYRGIGIRIEDDIVIT 412
Query: 394 KSSNVENLSAMCPKNIDEIE 413
++ N ENL+A K +EIE
Sbjct: 413 ETGN-ENLTASVVKKPEEIE 431
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 132/440 (30%), Positives = 201/440 (45%), Gaps = 82/440 (18%)
Query: 7 YIFRQNTDFFYFTGCLEPDSAVVIHGASDENFKSELFVKRKDAKAELWDGPRTGK--AQL 64
Y +RQN+DF+YFTG EP++ +V+ + D + S LF + +D AE+W G R G+ A
Sbjct: 41 YPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWYGRRLGQDAAPE 100
Query: 65 NGYVPRRKDYSWNVPKQLFHQLR----LYKSDSEQEMMRETCRIASEGFKETI--GFSKP 118
V R +S + +QL+ L +Y + E A E ++ + P
Sbjct: 101 KLGVDRALAFS-EINQQLYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAP 159
Query: 119 GRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNN---QKCCHGDLLLMDA 175
T D+ + ++ P +A A I + + +KC
Sbjct: 160 A-------TMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKC---------- 202
Query: 176 GFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLM 235
+PG E+ L + +E GA+ +Y +V SG+N ++HY N + GDL+L+
Sbjct: 203 ---RPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGENGCILHYTENECEMRDGDLVLI 259
Query: 236 DAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSALNFIYRYAY 295
DAGCE GY DITRT+P++G+FT Q+ +Y+IVL++ L+L S L
Sbjct: 260 DAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVR 319
Query: 296 VFQIGF--------------------KFCPHHSSHYLGMDVHDCAAI--PRTIPVAPGVV 333
+ G F H SH+LG+DVHD R+ + PG+V
Sbjct: 320 IMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMV 379
Query: 334 FTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILID 393
TVEPG+ YI+ D E ++RG+GIRIEDDI+I
Sbjct: 380 LTVEPGL--------------------------YIAPDA-EVPEQYRGIGIRIEDDIVIT 412
Query: 394 KSSNVENLSAMCPKNIDEIE 413
++ N ENL+A K +EIE
Sbjct: 413 ETGN-ENLTASVVKKPEEIE 431
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 131/440 (29%), Positives = 200/440 (45%), Gaps = 82/440 (18%)
Query: 7 YIFRQNTDFFYFTGCLEPDSAVVIHGASDENFKSELFVKRKDAKAELWDGPRTGK--AQL 64
Y +RQN+DF+YFTG EP++ +V+ + D + S LF + +D AE+W G R G+ A
Sbjct: 41 YPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPE 100
Query: 65 NGYVPRRKDYSWNVPKQLFHQLR----LYKSDSEQEMMRETCRIASEGFKETI--GFSKP 118
V R +S + +QL+ L +Y + E A E ++ + P
Sbjct: 101 KLGVDRALAFS-EINQQLYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAP 159
Query: 119 GRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNN---QKCCHGDLLLMDA 175
T D+ + ++ P +A A I + + +KC
Sbjct: 160 A-------TMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKC---------- 202
Query: 176 GFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLM 235
+PG E+ L + +E GA+ +Y +V SG+N ++HY N + GDL+L+
Sbjct: 203 ---RPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGENGCILHYTENEXEMRDGDLVLI 259
Query: 236 DAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSALNFIYRYAY 295
DAGCE GY DITRT+P++G+FT Q+ +Y+IVL++ L+L S L
Sbjct: 260 DAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVR 319
Query: 296 VFQIGF--------------------KFCPHHSSHYLGMDVHDCAAI--PRTIPVAPGVV 333
+ G F H SH+LG+DVHD R+ + PG+V
Sbjct: 320 IMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMV 379
Query: 334 FTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILID 393
TV PG+ YI+ D E ++RG+GIRIEDDI+I
Sbjct: 380 LTVAPGL--------------------------YIAPDA-EVPEQYRGIGIRIEDDIVIT 412
Query: 394 KSSNVENLSAMCPKNIDEIE 413
++ N ENL+A K +EIE
Sbjct: 413 ETGN-ENLTASVVKKPEEIE 431
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 131/440 (29%), Positives = 200/440 (45%), Gaps = 82/440 (18%)
Query: 7 YIFRQNTDFFYFTGCLEPDSAVVIHGASDENFKSELFVKRKDAKAELWDGPRTGK--AQL 64
Y +RQN+DF+YFTG EP++ +V+ + D + S LF + +D AE+W G R G+ A
Sbjct: 41 YPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPE 100
Query: 65 NGYVPRRKDYSWNVPKQLFHQLR----LYKSDSEQEMMRETCRIASEGFKETI--GFSKP 118
V R +S + +QL+ L +Y + E A E ++ + P
Sbjct: 101 KLGVDRALAFS-EINQQLYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAP 159
Query: 119 GRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNN---QKCCHGDLLLMDA 175
T D+ + ++ P +A A I + + +KC
Sbjct: 160 A-------TMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKC---------- 202
Query: 176 GFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLM 235
+PG E+ L + +E GA+ +Y +V SG+N ++ Y N + GDL+L+
Sbjct: 203 ---RPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGENGCILAYTENEXEMRDGDLVLI 259
Query: 236 DAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSALNFIYRYAY 295
DAGCE GY DITRT+P++G+FT Q+ +Y+IVL++ L+L S L
Sbjct: 260 DAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVR 319
Query: 296 VFQIGF--------------------KFCPHHSSHYLGMDVHDCAAI--PRTIPVAPGVV 333
+ G F H SH+LG+DVHD R+ + PG+V
Sbjct: 320 IMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMV 379
Query: 334 FTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILID 393
TVEPG+ YI+ D E ++RG+GIRIEDDI+I
Sbjct: 380 LTVEPGL--------------------------YIAPDA-EVPEQYRGIGIRIEDDIVIT 412
Query: 394 KSSNVENLSAMCPKNIDEIE 413
++ N ENL+A K +EIE
Sbjct: 413 ETGN-ENLTASVVKKPEEIE 431
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 131/440 (29%), Positives = 200/440 (45%), Gaps = 82/440 (18%)
Query: 7 YIFRQNTDFFYFTGCLEPDSAVVIHGASDENFKSELFVKRKDAKAELWDGPRTGK--AQL 64
Y +RQN+DF+YFTG EP++ +V+ + D + S LF + +D AE+W G R G+ A
Sbjct: 41 YPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPE 100
Query: 65 NGYVPRRKDYSWNVPKQLFHQLR----LYKSDSEQEMMRETCRIASEGFKETI--GFSKP 118
V R +S + +QL+ L +Y + E A E ++ + P
Sbjct: 101 KLGVDRALAFS-EINQQLYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAP 159
Query: 119 GRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNN---QKCCHGDLLLMDA 175
T D+ + ++ P +A A I + + +KC
Sbjct: 160 A-------TMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKC---------- 202
Query: 176 GFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLM 235
+PG E+ L + +E GA+ +Y +V SG+N ++HY N + GDL+L+
Sbjct: 203 ---RPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGENGCILHYTENEXEMRDGDLVLI 259
Query: 236 DAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSALNFIYRYAY 295
DAGCE GY DITRT+P++G+FT Q+ +Y+IVL++ L+L S L
Sbjct: 260 DAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVR 319
Query: 296 VFQIGF--------------------KFCPHHSSHYLGMDVHDCAAI--PRTIPVAPGVV 333
+ G F H SH+LG+DV D R+ + PG+V
Sbjct: 320 IMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVADVGVYGQDRSRILEPGMV 379
Query: 334 FTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILID 393
TVEPG+ YI+ D E ++RG+GIRIEDDI+I
Sbjct: 380 LTVEPGL--------------------------YIAPDA-EVPEQYRGIGIRIEDDIVIT 412
Query: 394 KSSNVENLSAMCPKNIDEIE 413
++ N ENL+A K +EIE
Sbjct: 413 ETGN-ENLTASVVKKPEEIE 431
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 164 bits (416), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 131/440 (29%), Positives = 200/440 (45%), Gaps = 82/440 (18%)
Query: 7 YIFRQNTDFFYFTGCLEPDSAVVIHGASDENFKSELFVKRKDAKAELWDGPRTGK--AQL 64
Y +RQN+DF+YFTG EP++ +V+ + D + S LF + +D AE+W G R G+ A
Sbjct: 41 YPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPE 100
Query: 65 NGYVPRRKDYSWNVPKQLFHQLR----LYKSDSEQEMMRETCRIASEGFKETI--GFSKP 118
V R +S + +QL+ L +Y + E A E ++ + P
Sbjct: 101 KLGVDRALAFS-EINQQLYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAP 159
Query: 119 GRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNN---QKCCHGDLLLMDA 175
T D+ + ++ P +A A I + + +KC
Sbjct: 160 A-------TMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKC---------- 202
Query: 176 GFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLM 235
+PG E+ L + +E GA+ +Y +V SG+N ++HY N + GDL+L+
Sbjct: 203 ---RPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGENGCILHYTENECEMRDGDLVLI 259
Query: 236 DAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSALNFIYRYAY 295
DAGCE GY DITRT+P++G+FT Q+ +Y+IVL++ L+L S L
Sbjct: 260 DAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVR 319
Query: 296 VFQIGF--------------------KFCPHHSSHYLGMDVHDCAAI--PRTIPVAPGVV 333
+ G F H SH+LG+DVHD R+ + PG+V
Sbjct: 320 IMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMV 379
Query: 334 FTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILID 393
TV PG+ YI+ D E ++RG+GIRIEDDI+I
Sbjct: 380 LTVAPGL--------------------------YIAPDA-EVPEQYRGIGIRIEDDIVIT 412
Query: 394 KSSNVENLSAMCPKNIDEIE 413
++ N ENL+A K +EIE
Sbjct: 413 ETGN-ENLTASVVKKPEEIE 431
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 131/440 (29%), Positives = 200/440 (45%), Gaps = 82/440 (18%)
Query: 7 YIFRQNTDFFYFTGCLEPDSAVVIHGASDENFKSELFVKRKDAKAELWDGPRTGK--AQL 64
Y +RQN+DF+YFTG EP++ +V+ + D + S LF + +D AE+W G R G+ A
Sbjct: 41 YPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPE 100
Query: 65 NGYVPRRKDYSWNVPKQLFHQLR----LYKSDSEQEMMRETCRIASEGFKETI--GFSKP 118
V R +S + +QL+ L +Y + E A E ++ + P
Sbjct: 101 KLGVDRALAFS-EINQQLYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAP 159
Query: 119 GRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNN---QKCCHGDLLLMDA 175
T D+ + ++ P +A A I + + +KC
Sbjct: 160 A-------TMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKC---------- 202
Query: 176 GFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLM 235
+PG E+ L + +E GA+ +Y +V SG+N ++HY N + GDL+L+
Sbjct: 203 ---RPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGENGCILHYTENECEMRDGDLVLI 259
Query: 236 DAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSALNFIYRYAY 295
AGCE GY DITRT+P++G+FT Q+ +Y+IVL++ L+L S L
Sbjct: 260 AAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVR 319
Query: 296 VFQIGF--------------------KFCPHHSSHYLGMDVHDCAAI--PRTIPVAPGVV 333
+ G F H SH+LG+DVHD R+ + PG+V
Sbjct: 320 IMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMV 379
Query: 334 FTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILID 393
TVEPG+ YI+ D E ++RG+GIRIEDDI+I
Sbjct: 380 LTVEPGL--------------------------YIAPDA-EVPEQYRGIGIRIEDDIVIT 412
Query: 394 KSSNVENLSAMCPKNIDEIE 413
++ N ENL+A K +EIE
Sbjct: 413 ETGN-ENLTASVVKKPEEIE 431
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 131/440 (29%), Positives = 200/440 (45%), Gaps = 82/440 (18%)
Query: 7 YIFRQNTDFFYFTGCLEPDSAVVIHGASDENFKSELFVKRKDAKAELWDGPRTGK--AQL 64
Y +RQN+DF+YFTG EP++ +V+ + D + S LF + +D AE+W G R G+ A
Sbjct: 41 YPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPE 100
Query: 65 NGYVPRRKDYSWNVPKQLFHQLR----LYKSDSEQEMMRETCRIASEGFKETI--GFSKP 118
V R +S + +QL+ L +Y + E A E ++ + P
Sbjct: 101 KLGVDRALAFS-EINQQLYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAP 159
Query: 119 GRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNN---QKCCHGDLLLMDA 175
T D+ + ++ P +A A I + + +KC
Sbjct: 160 A-------TMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKC---------- 202
Query: 176 GFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLM 235
+PG E+ L + +E GA+ +Y +V SG+N ++HY N + GDL+L+
Sbjct: 203 ---RPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGENGCILHYTENECEMRDGDLVLI 259
Query: 236 DAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSALNFIYRYAY 295
DAGCE GY ITRT+P++G+FT Q+ +Y+IVL++ L+L S L
Sbjct: 260 DAGCEYKGYAGAITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVR 319
Query: 296 VFQIGF--------------------KFCPHHSSHYLGMDVHDCAAI--PRTIPVAPGVV 333
+ G F H SH+LG+DVHD R+ + PG+V
Sbjct: 320 IMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMV 379
Query: 334 FTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILID 393
TVEPG+ YI+ D E ++RG+GIRIEDDI+I
Sbjct: 380 LTVEPGL--------------------------YIAPDA-EVPEQYRGIGIRIEDDIVIT 412
Query: 394 KSSNVENLSAMCPKNIDEIE 413
++ N ENL+A K +EIE
Sbjct: 413 ETGN-ENLTASVVKKPEEIE 431
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 131/440 (29%), Positives = 199/440 (45%), Gaps = 82/440 (18%)
Query: 7 YIFRQNTDFFYFTGCLEPDSAVVIHGASDENFKSELFVKRKDAKAELWDGPRTGK--AQL 64
Y +RQN+DF+YFTG EP++ +V+ + D + S LF + +D AE+W G R G+ A
Sbjct: 41 YPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPE 100
Query: 65 NGYVPRRKDYSWNVPKQLFHQLR----LYKSDSEQEMMRETCRIASEGFKETI--GFSKP 118
V R +S + +QL+ L +Y + E A E ++ + P
Sbjct: 101 KLGVDRALAFS-EINQQLYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAP 159
Query: 119 GRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVI---HYVHNNQKCCHGDLLLMDA 175
T D+ + ++ P +A A I + +KC
Sbjct: 160 A-------TMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKC---------- 202
Query: 176 GFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLM 235
+PG E+ L + +E GA+ +Y +V SG+N ++HY N + GDL+L+
Sbjct: 203 ---RPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGENGCILHYTENECEMRDGDLVLI 259
Query: 236 DAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSALNFIYRYAY 295
DAGCE GY DITRT+P++G+FT Q+ +Y+IVL++ L+L S L
Sbjct: 260 DAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVR 319
Query: 296 VFQIGF--------------------KFCPHHSSHYLGMDVHDCAAI--PRTIPVAPGVV 333
+ G F SH+LG+DVHD R+ + PG+V
Sbjct: 320 IMVSGLVKLGILKGDVDELIAQNAHRPFFMAGLSHWLGLDVHDVGVYGQDRSRILEPGMV 379
Query: 334 FTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILID 393
TVEPG+ YI+ D E ++RG+GIRIEDDI+I
Sbjct: 380 LTVEPGL--------------------------YIAPDA-EVPEQYRGIGIRIEDDIVIT 412
Query: 394 KSSNVENLSAMCPKNIDEIE 413
++ N ENL+A K +EIE
Sbjct: 413 ETGN-ENLTASVVKKPEEIE 431
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 131/441 (29%), Positives = 199/441 (45%), Gaps = 83/441 (18%)
Query: 7 YIFRQNTDFFYFTGCLEPDSAVVIHGASDENFKSELFVKRKDAKAELWDGPRTGK--AQL 64
Y +RQN+DF+YFTG EP++ +V+ + D + S LF + +D AE+W G R G+ A
Sbjct: 41 YPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPE 100
Query: 65 NGYVPRRKDYSWNVPKQLFHQLR----LYKSDSEQEMMRETCRIASEGFKETI--GFSKP 118
V R +S + +QL+ L +Y + E A E ++ + P
Sbjct: 101 KLGVDRALAFS-EINQQLYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAP 159
Query: 119 GRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVI---HYVHNNQKCCHGDLLLMDA 175
T D+ + ++ P +A A I + +KC
Sbjct: 160 A-------TMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKC---------- 202
Query: 176 GFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNN-QKCCHGDLLL 234
+PG E+ L + +E GA+ +Y +V SG+N ++HY N + GDL+L
Sbjct: 203 ---RPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGENGCILHYTENECXEMRDGDLVL 259
Query: 235 MDAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSALNFIYRYA 294
+DAGCE GY DITRT+P++G+FT Q+ +Y+IVL++ L+L S L
Sbjct: 260 IDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVV 319
Query: 295 YVFQIGF--------------------KFCPHHSSHYLGMDVHDCAAI--PRTIPVAPGV 332
+ G F H S +LG+DVHD R+ + PG+
Sbjct: 320 RIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSAWLGLDVHDVGVYGQDRSRILEPGM 379
Query: 333 VFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILI 392
V TVEPG+ YI+ D E ++RG+GIRIEDDI+I
Sbjct: 380 VLTVEPGL--------------------------YIAPDA-EVPEQYRGIGIRIEDDIVI 412
Query: 393 DKSSNVENLSAMCPKNIDEIE 413
++ N ENL+A K +EIE
Sbjct: 413 TETGN-ENLTASVVKKPEEIE 432
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 114/238 (47%), Gaps = 50/238 (21%)
Query: 178 SKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDA 237
+K E+EL +FD+ ++ G + A+ ++ASG NA V+HY N+ + +GDL+L+D
Sbjct: 198 AKADXXEYELEAQFDFTLKSSGIKHHAFNTILASGKNATVLHYEDNDAQIQNGDLVLLDL 257
Query: 238 GCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDT----------QLKLLKLCEKSDSAL 287
G + + Y++DI+ T+P +G F+ QK +Y IVL+ LK L E + L
Sbjct: 258 GAQKDYYNADISYTFPANGTFSSRQKQIYNIVLNALKETTEIIKPGLKFAALNEHAKKVL 317
Query: 288 NFIYRYAYVFQIG---FKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHD 344
+ + Q K+ H SH+LG+D HD +
Sbjct: 318 AEGCKAVGLIQEDEELSKYYYHGVSHFLGLDTHDVGTYKDRV------------------ 359
Query: 345 CAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILIDKSSNVENLS 402
+ G V T+EPG+YI ++ +GIRIEDDIL+ K + ENLS
Sbjct: 360 ---------LEEGXVITIEPGLYIEEES---------IGIRIEDDILVTKDGH-ENLS 398
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 58/95 (61%)
Query: 85 QLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQILAYP 144
+LR++K+D E E+++E + +G + +K E+EL +FD+ ++ G + A+
Sbjct: 167 ELRVFKTDEEIEIIKEAIAVTKDGIYNVLKHAKADXXEYELEAQFDFTLKSSGIKHHAFN 226
Query: 145 PVVASGDNANVIHYVHNNQKCCHGDLLLMDAGFSK 179
++ASG NA V+HY N+ + +GDL+L+D G K
Sbjct: 227 TILASGKNATVLHYEDNDAQIQNGDLVLLDLGAQK 261
>pdb|2IW2|A Chain A, Crystal Structure Of Human Prolidase
pdb|2IW2|B Chain B, Crystal Structure Of Human Prolidase
pdb|2OKN|A Chain A, Crystal Strcture Of Human Prolidase
pdb|2OKN|B Chain B, Crystal Strcture Of Human Prolidase
Length = 494
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 124/455 (27%), Positives = 187/455 (41%), Gaps = 91/455 (20%)
Query: 8 IFRQNTDFFYFTGCLEPDSAVVIHGASDENFKSELFVKRKDAKAELWDGPRTGKAQLN-G 66
+FRQ + F + G EP VI + KS LFV R A W G K
Sbjct: 65 LFRQESFFHWAFGVTEPGCYGVI---DVDTGKSTLFVPRLPASHATWMGKIHSKEHFKEK 121
Query: 67 YVPRRKDYSWNVPKQLFHQ-------LRLYKSDSEQEMMRETCRIASEGFKETIGFSKPG 119
Y Y + L Q LR +DS + RE F+ P
Sbjct: 122 YAVDDVQYVDEIASVLTSQKPSVLLTLRGVNTDS-GSVCREASFDGISKFEVNNTILHPE 180
Query: 120 RTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGFSK 179
E +F K D E+ ++L Y ++S + V+ V K
Sbjct: 181 IVECRVF-KTDMEL-----EVLRYTNKISSEAHREVMKAV-------------------K 215
Query: 180 PGRTEHELFTKFDYEVRMRGA-QILAYPPVVASGDNANVIHYVH----NNQKCCHGDLLL 234
G E+EL + F++ RG + +Y + SG+N+ V+HY H N++ +GD+ L
Sbjct: 216 VGMKEYELESLFEHYCYSRGGMRHSSYTCICGSGENSAVLHYGHAGAPNDRTIQNGDMCL 275
Query: 235 MDAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLL-------------KLCE 281
D G E + SDIT ++P +G+FT QK +YE VL + ++ +L +
Sbjct: 276 FDMGGEYYCFASDITCSFPANGKFTADQKAVYEAVLRSSRAVMGAMKPGVWWPDMHRLAD 335
Query: 282 KSD-------SALNFIYRYAYVFQIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVF 334
+ L+ +G F PH H+LG+DVHD P GV
Sbjct: 336 RIHLEELAHMGILSGSVDAMVQAHLGAVFMPHGLGHFLGIDVHDVGGYPE------GVER 389
Query: 335 TVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYI---------------SKDCKETRPEF 379
EPG+ ++ + PGMV TVEPG+Y S +E F
Sbjct: 390 IDEPGLR-----SLRTARHLQPGMVLTVEPGIYFIDHLLDEALADPARASFFNREVLQRF 444
Query: 380 RGM-GIRIEDDILIDKSSNVENLSAMCPKNIDEIE 413
RG G+RIE+D+++ S +E L+ + P+ ++EIE
Sbjct: 445 RGFGGVRIEEDVVV-TDSGIELLTCV-PRTVEEIE 477
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 110/224 (49%), Gaps = 47/224 (20%)
Query: 181 GRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGCE 240
G+ E E+ K +Y ++M GA+ A+ ++ASG + + H V ++++ GDL+++D G
Sbjct: 157 GKKEREVAAKVEYLMKMNGAEKPAFDTIIASGYRSALPHGVASDKRIERGDLVVIDLGAL 216
Query: 241 LNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLK------LCEKSDS-ALNFIYRY 293
Y+SDITRT + G + QK +YEIVL+ Q K ++ ++ DS A N I Y
Sbjct: 217 YQHYNSDITRTI-VVGSPNEKQKEIYEIVLEAQKKAVESAKPGITAKELDSIARNIIAEY 275
Query: 294 AYVFQIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIP 353
Y ++ H H +G++VH+ P + +D +
Sbjct: 276 GY-----GEYFNHSLGHGVGLEVHEW------------------PRVSQYDETVLRE--- 309
Query: 354 VAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILIDKSSN 397
GMV T+EPG+YI K G+RIED ILI K+ +
Sbjct: 310 ---GMVITIEPGIYIPKIG----------GVRIEDTILITKNGS 340
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 54/95 (56%)
Query: 82 LFHQLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQIL 141
+ +R+ KS+ E +++ + C IA + I G+ E E+ K +Y ++M GA+
Sbjct: 120 VIRDMRIIKSEKEIKIIEKACEIADKAVMAAIEEITEGKKEREVAAKVEYLMKMNGAEKP 179
Query: 142 AYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 176
A+ ++ASG + + H V ++++ GDL+++D G
Sbjct: 180 AFDTIIASGYRSALPHGVASDKRIERGDLVVIDLG 214
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 110/227 (48%), Gaps = 45/227 (19%)
Query: 177 FSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMD 236
F +PG +E E+ + ++ +R +GA ++ +VASG + + H V + + GD + +D
Sbjct: 156 FIRPGVSEIEVSNELEFFMRKQGATSSSFDIIVASGLRSALPHGVASEKVIETGDFVTLD 215
Query: 237 AGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLK-----LCEKSDSALNFIY 291
G GY SDITRT + G+ +D K +Y IVL+ QL+ + L + AL
Sbjct: 216 FGAYYKGYCSDITRTIAV-GEPSDKLKEIYNIVLEAQLRGVNGIKAGLTGREADALT--- 271
Query: 292 RYAYVFQIGF-KFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPR 350
Y+ + G+ ++ H + H +G+++H+ APG+ F + ++
Sbjct: 272 -RDYITEKGYGEYFGHSTGHGIGLEIHE----------APGLAFRSDTVLE--------- 311
Query: 351 TIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILIDKSSN 397
PGM TVEPG+YI G+RIEDDI++ N
Sbjct: 312 -----PGMAVTVEPGIYIPGIG----------GVRIEDDIIVTSEGN 343
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 56/95 (58%)
Query: 82 LFHQLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQIL 141
L +LRL K+DSE ++++E +IA F+ + F +PG +E E+ + ++ +R +GA
Sbjct: 123 LVEKLRLIKTDSEIKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGATSS 182
Query: 142 AYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 176
++ +VASG + + H V + + GD + +D G
Sbjct: 183 SFDIIVASGLRSALPHGVASEKVIETGDFVTLDFG 217
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 109/215 (50%), Gaps = 39/215 (18%)
Query: 181 GRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGCE 240
G+ E E+ K +Y ++M GA+ A+ ++ASG + + H V ++++ GDL+++D G
Sbjct: 154 GKREREVAAKVEYLMKMNGAEKPAFDTIIASGHRSALPHGVASDKRIERGDLVVIDLGAL 213
Query: 241 LNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSA--LNFIYRYAYVFQ 298
N Y+SDITRT + G + Q+ +YEIVL+ Q + ++ + +A L+ I R + +
Sbjct: 214 YNHYNSDITRTI-VVGSPNEKQREIYEIVLEAQKRAVEAAKPGMTAKELDSIAR-EIIKE 271
Query: 299 IGF-KFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPG 357
G+ + H H +G+++H+ P + +D + G
Sbjct: 272 YGYGDYFIHSLGHGVGLEIHEW------------------PRISQYDETVLKE------G 307
Query: 358 MVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILI 392
MV T+EPG+YI K G+RIED +LI
Sbjct: 308 MVITIEPGIYIPKLG----------GVRIEDTVLI 332
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 53/95 (55%)
Query: 82 LFHQLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQIL 141
+ LR+ K+ E E++ + C IA + I G+ E E+ K +Y ++M GA+
Sbjct: 117 VIKDLRIIKTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKP 176
Query: 142 AYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 176
A+ ++ASG + + H V ++++ GDL+++D G
Sbjct: 177 AFDTIIASGHRSALPHGVASDKRIERGDLVVIDLG 211
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 102/220 (46%), Gaps = 40/220 (18%)
Query: 181 GRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGCE 240
G E EL K + +R I A+ P+VASG+NA H+ +K GD++++D G
Sbjct: 161 GMKERELALKIELLIRELSDGI-AFEPIVASGENAANPHHEPGERKIRKGDIIILDYGAR 219
Query: 241 LNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSALNFIYRYAYVF-QI 299
GY SDITRT + G+ + +YE+V D Q K + A + R V +
Sbjct: 220 WKGYCSDITRTIGL-GELDERLVKIYEVVKDAQESAFKAVREGIKAKDVDSRAREVISKA 278
Query: 300 GF-KFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGM 358
G+ ++ H + H LG+DVH+ I P D I + GM
Sbjct: 279 GYGEYFIHRTGHGLGLDVHEEPYI------GP-------------DGEVILKN-----GM 314
Query: 359 VFTVEPGVYISKDCKETRPEFRGM-GIRIEDDILIDKSSN 397
FT+EPG+Y+ G+ G+RIEDDI++D+
Sbjct: 315 TFTIEPGIYVP-----------GLGGVRIEDDIVVDEGKG 343
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 74 YSWNVPKQLFHQLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEV 133
+++ L +LR+ K E +MM RIA + F+E + + G E EL K + +
Sbjct: 116 FTFQPLSSLIKELRMIKDKEEVKMMEHASRIADKVFEEILTWDLIGMKERELALKIELLI 175
Query: 134 RMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGFSKPG 181
R I A+ P+VASG+NA H+ +K GD++++D G G
Sbjct: 176 RELSDGI-AFEPIVASGENAANPHHEPGERKIRKGDIIILDYGARWKG 222
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 116/234 (49%), Gaps = 41/234 (17%)
Query: 179 KPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 238
+ G TE E+ +Y +R GA+ +A+ +VASG + + H +++ GD++++D G
Sbjct: 161 RAGMTEKEIAALLEYTMRKEGAEGVAFDTIVASGCRSALPHGKASDKVVERGDVIVIDFG 220
Query: 239 CELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEK--SDSALNFIYRYAYV 296
Y +DITR I G+ +D K ++ IVL+ Q + LK+ + + L+ + R ++
Sbjct: 221 ATYENYCADITRVVSI-GEPSDEVKEVHSIVLEAQERALKIAKAGVTGKLLDSVAR-EFI 278
Query: 297 FQIGF-KFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVA 355
+ G+ +F H H +G++VH+ P + F + P+
Sbjct: 279 REKGYGEFFGHSLGHGIGLEVHE----------GPAISFRNDS--------------PLP 314
Query: 356 PGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILIDKSSNVENLSAMCPKNI 409
+VFTVEPG+Y+ GIRIE+D+++ K E L+ + P++I
Sbjct: 315 ENVVFTVEPGIYLEGK----------FGIRIEEDVVL-KEQGCEILTTL-PRSI 356
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 52/92 (56%)
Query: 85 QLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQILAYP 144
Q+R+ K + E E +++ I+ F ET+ + G TE E+ +Y +R GA+ +A+
Sbjct: 129 QMRMVKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALLEYTMRKEGAEGVAFD 188
Query: 145 PVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 176
+VASG + + H +++ GD++++D G
Sbjct: 189 TIVASGCRSALPHGKASDKVVERGDVIVIDFG 220
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 108/225 (48%), Gaps = 49/225 (21%)
Query: 181 GRTEHELFTKFDYEVRMR-GAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGC 239
G++E EL + +Y ++ GA +++ P+VASG N H+ +++K GD+++ D G
Sbjct: 180 GKSERELANRIEYMIKNEFGADDVSFEPIVASGPNGANPHHRPSHRKIRKGDVVIFDYGA 239
Query: 240 ELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQ-LKLLKLCEK------SDSALNFIYR 292
+ GY SD+TRT + G ++ K +YEIV + Q + K+ E +A I +
Sbjct: 240 KYLGYCSDVTRTV-VVGPPSEEVKKVYEIVKEAQETAVQKVAEGIPAEVVDATARGIISK 298
Query: 293 YAYVFQIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRTI 352
Y Y ++ H + H LG+DVH+ I +PG
Sbjct: 299 YGY-----GEYFIHRTGHGLGIDVHEEPYI------SPG------------------NKK 329
Query: 353 PVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDI-LIDKSS 396
+ GMVFT+EPG+Y+ G+RIEDD+ L+DK
Sbjct: 330 ILKDGMVFTIEPGIYLQGK----------FGVRIEDDVALVDKKG 364
>pdb|3RVA|A Chain A, Crystal Structure Of Organophosphorus Acid Anhydrolase
From Alteromonas Macleodii
Length = 451
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 129/317 (40%), Gaps = 70/317 (22%)
Query: 151 DNAN---VIHYVHNNQK--------CCHGDLLLMDAGFSKPGRTEHELFTKFDYEV---- 195
DN N V+HY+H + C L AG + E ++FD +
Sbjct: 142 DNVNPDRVLHYLHYQRAYKTDYELDCMREANKLAVAGHKAAEQAFREGKSEFDINLAYAA 201
Query: 196 -RMRGAQILAYPPVVASGDNANVIHYVHNNQKC-CHGDLLLMDAGCELNGYDSDITRTWP 253
+G + Y +VA ++A+++HY+ + L+DAG +GY +DITRT+
Sbjct: 202 ASRQGDNDVPYTSIVALNEHASILHYMQXDTVAPKESRSFLIDAGANYHGYAADITRTYA 261
Query: 254 ISGQFTDHQKVLYEIVLDTQLKL-LKLCE--KSDSALNFIYRYAY--------------- 295
G H ++ ++ K+ L L + K A I+ A+
Sbjct: 262 QEGV---HNSAMFRDLIQAVDKVTLTLVDSLKPGVAYTDIHLLAHDGIAQILHDTGMVNL 318
Query: 296 ----VFQIGFK--FCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIP 349
+ ++G F PH H+LG+ VHD + P +P D H
Sbjct: 319 TPPEIVEMGITRTFFPHGIGHFLGLQVHDVGGLVNDDRGTP------KPAPDDHPFLRCT 372
Query: 350 RTIPVAPGMVFTVEPGVY----ISKDCKETRPEFRGM------------GIRIEDDILID 393
R V VFT+EPG+Y + +D K T P + + GIRIED+I++
Sbjct: 373 RM--VEARQVFTIEPGLYFIDSLLRDLKAT-PASKYINWDTIDAYKPFGGIRIEDNIIVH 429
Query: 394 KSSNVENLSAMCPKNID 410
+ N EN++ N++
Sbjct: 430 RDKN-ENMTRDLDLNLE 445
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 79 PKQLFHQL---RLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRM 135
P ++ H L R YK+D E + MRE ++A G K + G++E ++ + R
Sbjct: 146 PDRVLHYLHYQRAYKTDYELDCMREANKLAVAGHKAAEQAFREGKSEFDINLAYAAASR- 204
Query: 136 RGAQILAYPPVVASGDNANVIHYVHNNQKC-CHGDLLLMDAGFSKPG 181
+G + Y +VA ++A+++HY+ + L+DAG + G
Sbjct: 205 QGDNDVPYTSIVALNEHASILHYMQXDTVAPKESRSFLIDAGANYHG 251
>pdb|3L24|A Chain A, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|B Chain B, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|C Chain C, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L7G|A Chain A, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|B Chain B, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|C Chain C, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
Length = 517
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 100/237 (42%), Gaps = 53/237 (22%)
Query: 205 YPPVVASGDNANVIHYVHNNQ--KCCHGDLLLMDAGCELNGYDSDITRTWPIS--GQFTD 260
Y +VA +N ++HY H ++ H L+ DAG NGY +DITRT+ + G+F +
Sbjct: 212 YGNIVALNENCAILHYTHFDRVAPATHRSFLI-DAGANFNGYAADITRTYDFTGEGEFAE 270
Query: 261 HQKVL--YEIVLDTQLKLLKL-----------CEKSDSALNFIYRYA---YVFQIGFKFC 304
+ ++I L QL KL ++ S N + A I F
Sbjct: 271 LVATMKQHQIALMNQLAPGKLYGELHLDCHQRVAQTLSDFNIVDLSADEIVAKGITSTFF 330
Query: 305 PHHSSHYLGMDVHDCAAI-----------PRTIP-------VAPGVVFTVEPGMDVHDCA 346
PH H++G+ VHD P P + VFT+EPG+ D
Sbjct: 331 PHGLGHHIGLQVHDVGGFMADEQGAHQEPPEGHPFLRCTRKIEANQVFTIEPGLYFIDSL 390
Query: 347 AIPRTIPVAPGMVFTVEPGVYISKD-CKETRPEFRGMGIRIEDDILIDKSSNVENLS 402
G + + +I+ D E +P GIRIED+I++ + S +EN++
Sbjct: 391 L---------GDLAATDNNQHINWDKVAELKP---FGGIRIEDNIIVHEDS-LENMT 434
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 82/174 (47%), Gaps = 17/174 (9%)
Query: 177 FSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMD 236
F PGRTE ++ + G +A+ +V SG + H+ ++++K GD++++D
Sbjct: 176 FLVPGRTEAQVAADIAEAIVAEGHSAVAFV-IVGSGPHGADPHHGYSDRKLQVGDIVVVD 234
Query: 237 AGCELN-GYDSDITRTWPI-------SGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSALN 288
G GY SD TRT+ I + Q++ Q+ V ++ + D+A
Sbjct: 235 IGGTYEPGYYSDSTRTYSIGDPSPDVAQQYSALQRAQRAAV--DAVRPGVTAAQVDAAAR 292
Query: 289 FIYRYAYVFQIGFKFCPHHSSHYLGMDVHDCAAI--PRTIPVAPGVVFTVEPGM 340
+ A + + + H + H +G+ VH+ I +P+ G+ F++EPG+
Sbjct: 293 DVLADAGLAE----YFVHRTGHGIGLCVHEEPYIVAGNELPLVAGMAFSIEPGI 342
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
Query: 82 LFHQLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQIL 141
+ QLR+ K +E + + + F PGRTE ++ + G +
Sbjct: 143 VLRQLRMVKEAAEVDALAKAGAAIDRVHARVPAFLVPGRTEAQVAADIAEAIVAEGHSAV 202
Query: 142 AYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGFS-KPG 181
A+ +V SG + H+ ++++K GD++++D G + +PG
Sbjct: 203 AF-VIVGSGPHGADPHHGYSDRKLQVGDIVVVDIGGTYEPG 242
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
Tuberculosis Methionine Aminopeptidase
Length = 291
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 65/148 (43%), Gaps = 12/148 (8%)
Query: 204 AYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQK 263
+P ++ N + H + ++ GD++ +D + G D T+P +G D +
Sbjct: 105 GFPKSCSTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFP-AGDVADEHR 163
Query: 264 VLYEIVLDTQLKLLKLCEKSDSALNFIYRY--AYVFQIGFKFCPHHSSHYLGMDVHDCAA 321
+L + + ++ + K AL+ I R +Y + G+ + H +G H+
Sbjct: 164 LLVDRTREATMRAINTV-KPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLV 222
Query: 322 I-------PRTIPVAPGVVFTVEPGMDV 342
+ TI + PG+ FT+EP +++
Sbjct: 223 VLHYDQPAVETI-MQPGMTFTIEPMINL 249
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 12/148 (8%)
Query: 204 AYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQK 263
+P + N + H + ++ GD++ +D + G D T+P +G D +
Sbjct: 105 GFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFP-AGDVADEHR 163
Query: 264 VLYEIVLDTQLKLLKLCEKSDSALNFIYRY--AYVFQIGFKFCPHHSSHYLGMDVHDCAA 321
+L + + ++ + K AL+ I R +Y + G+ + H +G H+
Sbjct: 164 LLVDRTREATMRAINTV-KPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLV 222
Query: 322 I-------PRTIPVAPGVVFTVEPGMDV 342
+ TI + PG+ FT+EP +++
Sbjct: 223 VLHYDQPAVETI-MQPGMTFTIEPMINL 249
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 12/148 (8%)
Query: 204 AYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQK 263
+P + N + H + ++ GD++ +D + G D T+P +G D +
Sbjct: 102 GFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFP-AGDVADEHR 160
Query: 264 VLYEIVLDTQLKLLKLCEKSDSALNFIYRY--AYVFQIGFKFCPHHSSHYLGMDVHDCAA 321
+L + + ++ + K AL+ I R +Y + G+ + H +G H+
Sbjct: 161 LLVDRTREATMRAINTV-KPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLV 219
Query: 322 I-------PRTIPVAPGVVFTVEPGMDV 342
+ TI + PG+ FT+EP +++
Sbjct: 220 VLHYDQPAVETI-MQPGMTFTIEPMINL 246
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 12/148 (8%)
Query: 204 AYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQK 263
+P + N + H + ++ GD++ +D + G D T+P +G D +
Sbjct: 99 GFPKSCCTSLNEVICHGIPDSTVITDGDIVNIDVTAYIGGVHGDTNATFP-AGDVADEHR 157
Query: 264 VLYEIVLDTQLKLLKLCEKSDSALNFIYRY--AYVFQIGFKFCPHHSSHYLGMDVHDCAA 321
+L + + ++ + K AL+ I R +Y + G+ + H +G H+
Sbjct: 158 LLVDRTREATMRAINTV-KPGRALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLV 216
Query: 322 I-------PRTIPVAPGVVFTVEPGMDV 342
+ TI + PG+ FT+EP +++
Sbjct: 217 VLHYDQPAVETI-MQPGMTFTIEPMINL 243
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 204 AYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQK 263
+P + + N V H + N++ +GD++ +D L+G+ D +R + + G K
Sbjct: 66 GFPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYV-GDVAIKPK 124
Query: 264 VLYEIVLDTQLKLLKLCEKSDSALNFIYRY-AYVFQIGFKFCPHHSSHYLGMDVHDCAAI 322
L ++ D +K +++ + Y +Y + + ++ H +G HD +I
Sbjct: 125 RLIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSI 184
Query: 323 ------PRTIPVAPGVVFTVEP 338
+ + G+ FTVEP
Sbjct: 185 LNYGRNGTGLTLKEGMFFTVEP 206
>pdb|3CTZ|A Chain A, Structure Of Human Cytosolic X-Prolyl Aminopeptidase
Length = 623
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 83/199 (41%), Gaps = 44/199 (22%)
Query: 203 LAYPPVVASGDNANVIHYV---HNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFT 259
L++P + ++G +IHY N+ ++ L+D+G + +D+TRT T
Sbjct: 379 LSFPTISSTGPTGAIIHYAPVPETNRTLSLDEVYLIDSGAQYKDGTTDVTRTMHFETP-T 437
Query: 260 DHQKVLYEIVLDTQLKLLKLCEKSDSALNFIYRYA--YVFQIGFKFCPHHSSHYLG--MD 315
++K + VL + + + + + + +A ++ G + H + H +G ++
Sbjct: 438 AYEKECFTYVLKGHIAVSAAVFPTGTKGHLLDSFARSALWDSGLDYL-HGTGHGVGSFLN 496
Query: 316 VHD--CAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCK 373
VH+ C +T F+ E P+ GM+ T EPG Y
Sbjct: 497 VHEGPCGISYKT--------FSDE---------------PLEAGMIVTDEPGYY------ 527
Query: 374 ETRPEFRGMGIRIEDDILI 392
E GIRIE+ +L+
Sbjct: 528 ----EDGAFGIRIENVVLV 542
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 204 AYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQK 263
+P + + N V H + N++ +GD++ +D L+G+ D +R + + G K
Sbjct: 66 GFPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYV-GDVAIKPK 124
Query: 264 VLYEIVLDTQLKLLKLCEKSDSALNFIYRY-AYVFQIGFKFCPHHSSHYLGMDVHDCAAI 322
L ++ D +K +++ + Y +Y + + ++ H +G HD +I
Sbjct: 125 RLIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSI 184
Query: 323 ------PRTIPVAPGVVFTVEP 338
+ + G+ FTVEP
Sbjct: 185 LNYGRNGTGLTLKEGMFFTVEP 206
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
Plasmodium Falciparum, Pf10_0150
Length = 368
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 15/149 (10%)
Query: 205 YPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKV 264
+P + N V H + + + GD++ +D G SD+ T+ + G D K
Sbjct: 162 FPKSCCTSVNEIVCHGIPDYRPLKSGDIINIDISVFYKGVHSDLNETYFV-GDINDVPKE 220
Query: 265 LYEIVLDTQLKLLKLCEKSDSALNFIYRY------AYVFQIGFKFCPHHSSHYLGMDVHD 318
E+V L++ +K + Y+ AYV + F +S H +G H
Sbjct: 221 GKELVETCYFSLMEAIKKCKPGM--FYKNIGTLIDAYVSKKNFSVVRSYSGHGVGKLFHS 278
Query: 319 CAAIP-----RTIPV-APGVVFTVEPGMD 341
+P + + + PG VFT+EP ++
Sbjct: 279 NPTVPHFKKNKAVGIMKPGHVFTIEPMIN 307
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 9/153 (5%)
Query: 186 ELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCC-HGDLLLMDAGCELNGY 244
E+F K + +G Y V+ N V+H + +K GD++ +D G G
Sbjct: 58 EIFKKLRVKPAFKGYGGYKYATCVSV--NEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGL 115
Query: 245 DSDITRTWPISGQFTDHQKVLYEI---VLDTQLKLLKLCEKSDSALNFIYRYAYVFQIGF 301
D T+ I G+ + K L + VL+ +K++K + + I V +GF
Sbjct: 116 YGDAAVTY-IVGETDERGKELVRVTREVLEKAIKMIKPGIRLGDVSHCIQET--VESVGF 172
Query: 302 KFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVF 334
+ H +G ++H+ IP GVV
Sbjct: 173 NVIRDYVGHGVGRELHEDPQIPNYGTPGTGVVL 205
>pdb|3CB6|A Chain A, Crystal Structure Of The S. Pombe Peptidase Homology
Domain Of Fact Complex Subunit Spt16 (Form B)
Length = 444
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 205 YPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKV 264
Y P++ SG + ++ + + HGD++L G Y S++ RT+ Q+
Sbjct: 253 YTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFDPD--SEQQK 310
Query: 265 LYEIVLDTQLKLLKLC 280
Y ++ Q KL + C
Sbjct: 311 NYSFLVALQKKLFEYC 326
>pdb|4FLI|A Chain A, Human Metap1 With Bengamide Analog Y16, In Mn Form
pdb|4FLJ|A Chain A, Human Metap1 With Bengamide Analog Y08, In Mn Form
pdb|4FLK|A Chain A, Human Metap1 With Bengamide Analog Y10, In Mn Form
pdb|4FLL|A Chain A, Human Metap1 With Bengamide Analog Yz6, In Mn Form
Length = 326
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 71/182 (39%), Gaps = 13/182 (7%)
Query: 169 DLLLMDAGFSKPGRTEHELFTKFDYEVRMRGA-----QILAYPPVVASGDNANVIHYVHN 223
++L + AG KPG T E+ R +P + N + H + +
Sbjct: 69 EVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPD 128
Query: 224 NQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCE-- 281
+ GD++ +D NGY D+ T+ + G+ D + L + + ++ + +
Sbjct: 129 RRPLQEGDIVNVDITLYRNGYHGDLNETFFV-GEVDDGARKLVQTTYECLMQAIDAVKPG 187
Query: 282 -KSDSALNFIYRYAYV--FQIGFKFCPH--HSSHYLGMDVHDCAAIPRTIPVAPGVVFTV 336
+ N I ++A F + +C H H + +V A + G VFT+
Sbjct: 188 VRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTI 247
Query: 337 EP 338
EP
Sbjct: 248 EP 249
>pdb|2G6P|A Chain A, Crystal Structure Of Truncated (Delta 1-89) Human
Methionine Aminopeptidase Type 1 In Complex With Pyridyl
Pyrimidine Derivative
Length = 304
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 71/182 (39%), Gaps = 13/182 (7%)
Query: 169 DLLLMDAGFSKPGRTEHELFTKFDYEVRMRGA-----QILAYPPVVASGDNANVIHYVHN 223
++L + AG KPG T E+ R +P + N + H + +
Sbjct: 68 EVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPD 127
Query: 224 NQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCE-- 281
+ GD++ +D NGY D+ T+ + G+ D + L + + ++ + +
Sbjct: 128 RRPLQEGDIVNVDITLYRNGYHGDLNETFFV-GEVDDGARKLVQTTYECLMQAIDAVKPG 186
Query: 282 -KSDSALNFIYRYAYV--FQIGFKFCPH--HSSHYLGMDVHDCAAIPRTIPVAPGVVFTV 336
+ N I ++A F + +C H H + +V A + G VFT+
Sbjct: 187 VRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTI 246
Query: 337 EP 338
EP
Sbjct: 247 EP 248
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
Query: 85 QLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGA-----Q 139
Q++L S+ + E MR CR+A E G KPG T E+ R
Sbjct: 47 QIKLLSSE-DIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLN 105
Query: 140 ILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGFSKPG 181
+P + N + H + + + GD++ +D + G
Sbjct: 106 YYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNG 147
>pdb|3CB5|A Chain A, Crystal Structure Of The S. Pombe Peptidase Homology
Domain Of Fact Complex Subunit Spt16 (form A)
pdb|3CB5|B Chain B, Crystal Structure Of The S. Pombe Peptidase Homology
Domain Of Fact Complex Subunit Spt16 (form A)
Length = 444
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 205 YPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKV 264
Y P++ SG + ++ + + HGD++L G Y S++ RT+ Q+
Sbjct: 253 YTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFDPD--SEQQK 310
Query: 265 LYEIVLDTQLKLLKLC 280
Y ++ Q KL + C
Sbjct: 311 NYSFLVALQKKLFEYC 326
>pdb|2FL8|A Chain A, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|B Chain B, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|C Chain C, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|D Chain D, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|E Chain E, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|F Chain F, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|G Chain G, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|H Chain H, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|I Chain I, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|J Chain J, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|K Chain K, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|L Chain L, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|M Chain M, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|N Chain N, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|O Chain O, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|P Chain P, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|Q Chain Q, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|R Chain R, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL9|A Chain A, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|B Chain B, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|C Chain C, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|D Chain D, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|E Chain E, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|F Chain F, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|G Chain G, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|H Chain H, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|I Chain I, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|J Chain J, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|K Chain K, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|L Chain L, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|M Chain M, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|N Chain N, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|O Chain O, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|P Chain P, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|Q Chain Q, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|R Chain R, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
Length = 602
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 152 NANVIHYVHNNQKCCHGDLLLMDAGFSKPGRTEHELFTKFDYEVRMR 198
N N I H + +GD+ ++ F PG E EL + +R+R
Sbjct: 187 NVNNIRVKHRGNELYYGDVFSENSDFGSPGENEGELVPLDGFNIRLR 233
>pdb|2B3H|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I With A Third Cobalt In The Active Site
pdb|2B3K|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I In The Holo Form
pdb|2B3L|A Chain A, Crystal Structure Of Type I Human Methionine
Aminopeptidase In The Apo Form
pdb|2GZ5|A Chain A, Human Type 1 Methionine Aminopeptidase In Complex With
Ovalicin At 1.1 Ang
pdb|2NQ6|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
1 In Complex With
3-Tert-Butoxycarbonylaminopyridine-2-Carboxylic Acid
Thiazole-2- Ylamide
pdb|2NQ7|A Chain A, Crystal Structure Of Type 1 Human Methionine
Aminopeptidase In Complex With
3-(2,2-Dimethylpropionylamino)pyridine-2-Carboxylic Acid
Thiazole-2-Ylamide
Length = 329
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 71/182 (39%), Gaps = 13/182 (7%)
Query: 169 DLLLMDAGFSKPGRTEHELFTKFDYEVRMRGA-----QILAYPPVVASGDNANVIHYVHN 223
++L + AG KPG T E+ R +P + N + H + +
Sbjct: 93 EVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPD 152
Query: 224 NQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCE-- 281
+ GD++ +D NGY D+ T+ + G+ D + L + + ++ + +
Sbjct: 153 RRPLQEGDIVNVDITLYRNGYHGDLNETFFV-GEVDDGARKLVQTTYECLMQAIDAVKPG 211
Query: 282 -KSDSALNFIYRYAYV--FQIGFKFCPH--HSSHYLGMDVHDCAAIPRTIPVAPGVVFTV 336
+ N I ++A F + +C H H + +V A + G VFT+
Sbjct: 212 VRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTI 271
Query: 337 EP 338
EP
Sbjct: 272 EP 273
>pdb|1CHM|B Chain B, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 45/202 (22%)
Query: 211 SGDNANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEI-- 268
SG N + H +K GD+L ++ + GY + + RT + DH + L+++
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLR-LWQVNV 281
Query: 269 -VLDTQLKLLK---LCEKSDSALNFIYRYAYVFQ---IGFKFCPHHSSHYLGMDVHDCAA 321
V + LKL+K C LN I+ V Q G+ SHY G
Sbjct: 282 EVHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSHYYGR------- 334
Query: 322 IPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPE-FR 380
E G+++ + + PGMV ++EP + + PE
Sbjct: 335 ---------------EAGLELREDI----DTVLEPGMVVSMEPMIML--------PEGLP 367
Query: 381 GMGIRIEDDILIDKSSNVENLS 402
G G E DILI + EN++
Sbjct: 368 GAGGYREHDILIVNENGAENIT 389
>pdb|1CHM|A Chain A, Enzymatic Mechanism Of Creatine Amidinohydrolase As
Deduced From Crystal Structures
Length = 401
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 45/202 (22%)
Query: 211 SGDNANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEI-- 268
SG N + H +K GD+L ++ + GY + + RT + DH + L+++
Sbjct: 223 SGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLR-LWQVNV 281
Query: 269 -VLDTQLKLLK---LCEKSDSALNFIYRYAYVFQ---IGFKFCPHHSSHYLGMDVHDCAA 321
V + LKL+K C LN I+ V Q G+ SHY G
Sbjct: 282 EVHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSHYYGR------- 334
Query: 322 IPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPE-FR 380
E G+++ + + PGMV ++EP + + PE
Sbjct: 335 ---------------EAGLELREDI----DTVLEPGMVVSMEPMIML--------PEGLP 367
Query: 381 GMGIRIEDDILIDKSSNVENLS 402
G G E DILI + EN++
Sbjct: 368 GAGGYREHDILIVNENGAENIT 389
>pdb|4FUK|A Chain A, Aminopeptidase From Trypanosoma Brucei
pdb|4FUK|B Chain B, Aminopeptidase From Trypanosoma Brucei
Length = 337
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 169 DLLLMDAGFSKPGRTEHEL---FTKFDYEVRMRGAQI--LAYPPVVASGDNANVIHYVHN 223
++L + +KPG T EL + E M + + +P V + N + H + +
Sbjct: 81 EVLDIATAAAKPGITTDELDRIVHEATVERNMYPSPLNYYGFPKSVCTSVNEVICHGIPD 140
Query: 224 NQKCCHGDLLLMDAGCELNGYDSDITRT 251
+++ GD+L +D LNG+ D+ T
Sbjct: 141 SRELEEGDILNIDVSSYLNGFHGDLNET 168
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 25/187 (13%)
Query: 204 AYPPVVASGDNANVIHYVHNNQKCCH-GDLLLMDAGCELNGYDSDITRTWPISGQFTDHQ 262
YP V N V H + ++ K GD++ +D +G+ D ++ + I G+ T
Sbjct: 64 GYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF-IVGKPTIMG 122
Query: 263 KVLYEIVLDTQLKLLKLCEKSDSALNF-IYRYAYVFQIGFKFCPHHSSHYLGMDVHDCAA 321
+ L I ++ L++ + + +V GF + H +G H+
Sbjct: 123 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHE--- 179
Query: 322 IPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRG 381
EP + +D + + PGM FT+EP V K KE R G
Sbjct: 180 ---------------EPQVLHYDSRET--NVVLKPGMTFTIEPMVNAGK--KEIRTMKDG 220
Query: 382 MGIRIED 388
++ +D
Sbjct: 221 WTVKTKD 227
>pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
Length = 263
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 25/187 (13%)
Query: 204 AYPPVVASGDNANVIHYVHNNQKCCH-GDLLLMDAGCELNGYDSDITRTWPISGQFTDHQ 262
YP V N V H + ++ K GD++ +D +G+ D ++ + I G+ T
Sbjct: 63 GYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF-IVGKPTIMG 121
Query: 263 KVLYEIVLDTQLKLLKLCEKSDSALNF-IYRYAYVFQIGFKFCPHHSSHYLGMDVHDCAA 321
+ L I ++ L++ + + +V GF + H +G H+
Sbjct: 122 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHE--- 178
Query: 322 IPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRG 381
EP + +D + + PGM FT+EP V K KE R G
Sbjct: 179 ---------------EPQVLHYDSRE--TNVVLKPGMTFTIEPMVNAGK--KEIRTMKDG 219
Query: 382 MGIRIED 388
++ +D
Sbjct: 220 WTVKTKD 226
>pdb|3MAT|A Chain A, E.coli Methionine Aminopeptidase Transition-state
Inhibitor Complex
Length = 265
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 25/187 (13%)
Query: 204 AYPPVVASGDNANVIHYVHNNQKCCH-GDLLLMDAGCELNGYDSDITRTWPISGQFTDHQ 262
YP V N V H + ++ K GD++ +D +G+ D ++ + I G+ T
Sbjct: 64 GYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF-IVGKPTIMG 122
Query: 263 KVLYEIVLDTQLKLLKLCEKSDSALNF-IYRYAYVFQIGFKFCPHHSSHYLGMDVHDCAA 321
+ L I ++ L++ + + +V GF + H +G H+
Sbjct: 123 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHE--- 179
Query: 322 IPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRG 381
EP + +D + + PGM FT+EP V K KE R G
Sbjct: 180 ---------------EPQVLHYDSRE--TNVVLKPGMTFTIEPMVNAGK--KEIRTMKDG 220
Query: 382 MGIRIED 388
++ +D
Sbjct: 221 WTVKTKD 227
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
pdb|1YVM|A Chain A, E. Coli Methionine Aminopeptidase In Complex With
Thiabendazole
pdb|4A6W|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 264
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 25/187 (13%)
Query: 204 AYPPVVASGDNANVIHYVHNNQKCCH-GDLLLMDAGCELNGYDSDITRTWPISGQFTDHQ 262
YP V N V H + ++ K GD++ +D +G+ D ++ + I G+ T
Sbjct: 64 GYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF-IVGKPTIMG 122
Query: 263 KVLYEIVLDTQLKLLKLCEKSDSALNF-IYRYAYVFQIGFKFCPHHSSHYLGMDVHDCAA 321
+ L I ++ L++ + + +V GF + H +G H+
Sbjct: 123 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGQGFHE--- 179
Query: 322 IPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRG 381
EP + +D + + PGM FT+EP V K KE R G
Sbjct: 180 ---------------EPQVLHYDSRE--TNVVLKPGMTFTIEPMVNAGK--KEIRTMKDG 220
Query: 382 MGIRIED 388
++ +D
Sbjct: 221 WTVKTKD 227
>pdb|2P99|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye6
Length = 261
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 73/190 (38%), Gaps = 25/190 (13%)
Query: 204 AYPPVVASGDNANVIHYVHNNQKCCH-GDLLLMDAGCELNGYDSDITRTWPISGQFTDHQ 262
YP V N V H + ++ K GD++ +D +G+ D ++ + I G+ T
Sbjct: 63 GYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF-IVGKPTIMG 121
Query: 263 KVLYEIVLDTQLKLLKLCEKSDSALNF-IYRYAYVFQIGFKFCPHHSSHYLGMDVHDCAA 321
+ L I ++ L++ + + +V GF + H +G H+
Sbjct: 122 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHE--- 178
Query: 322 IPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRG 381
EP + +D + + PGM FT+EP V K KE R G
Sbjct: 179 ---------------EPQVLHYDSRE--TNVVLKPGMTFTIEPMVNAGK--KEIRTMKDG 219
Query: 382 MGIRIEDDIL 391
++ +D L
Sbjct: 220 WTVKTKDRSL 229
>pdb|2GU4|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU4|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU5|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU5|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU6|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU6|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU7|A Chain A, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
pdb|2GU7|B Chain B, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
Length = 263
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 73/190 (38%), Gaps = 25/190 (13%)
Query: 204 AYPPVVASGDNANVIHYVHNNQKCCH-GDLLLMDAGCELNGYDSDITRTWPISGQFTDHQ 262
YP V N V H + ++ K GD++ +D +G+ D ++ + I G+ T
Sbjct: 63 GYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF-IVGKPTIMG 121
Query: 263 KVLYEIVLDTQLKLLKLCEKSDSALNF-IYRYAYVFQIGFKFCPHHSSHYLGMDVHDCAA 321
+ L I ++ L++ + + +V GF + H +G H+
Sbjct: 122 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHE--- 178
Query: 322 IPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRG 381
EP + +D + + PGM FT+EP V K KE R G
Sbjct: 179 ---------------EPQVLHYDSRET--NVVLKPGMTFTIEPMVNAGK--KEIRTMKDG 219
Query: 382 MGIRIEDDIL 391
++ +D L
Sbjct: 220 WTVKTKDRSL 229
>pdb|2GG0|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG2|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG3|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG5|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG7|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG8|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG9|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGB|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGC|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2Q93|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B21
pdb|2Q95|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A05
pdb|2Q96|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A18
Length = 263
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 25/187 (13%)
Query: 204 AYPPVVASGDNANVIHYVHNNQKCCH-GDLLLMDAGCELNGYDSDITRTWPISGQFTDHQ 262
YP V N V H + ++ K GD++ +D +G+ D ++ + I G+ T
Sbjct: 63 GYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF-IVGKPTIMG 121
Query: 263 KVLYEIVLDTQLKLLKLCEKSDSALNF-IYRYAYVFQIGFKFCPHHSSHYLGMDVHDCAA 321
+ L I ++ L++ + + +V GF + H +G H+
Sbjct: 122 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHE--- 178
Query: 322 IPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRG 381
EP + +D + + PGM FT+EP V K KE R G
Sbjct: 179 ---------------EPQVLHYDSRET--NVVLKPGMTFTIEPMVNAGK--KEIRTMKDG 219
Query: 382 MGIRIED 388
++ +D
Sbjct: 220 WTVKTKD 226
>pdb|4A6V|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
pdb|4A6V|B Chain B, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 265
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 25/187 (13%)
Query: 204 AYPPVVASGDNANVIHYVHNNQKCCH-GDLLLMDAGCELNGYDSDITRTWPISGQFTDHQ 262
YP V N V H + ++ K GD++ +D +G+ D ++ + I G+ T
Sbjct: 64 GYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF-IVGKPTIMG 122
Query: 263 KVLYEIVLDTQLKLLKLCEKSDSALNF-IYRYAYVFQIGFKFCPHHSSHYLGMDVHDCAA 321
+ L I ++ L++ + + +V GF + H +G H+
Sbjct: 123 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHE--- 179
Query: 322 IPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRG 381
EP + +D + + PGM FT+EP V K KE R G
Sbjct: 180 ---------------EPQVLHYDSRET--NVVLKPGMTFTIEPMVNAGK--KEIRTMKDG 220
Query: 382 MGIRIED 388
++ +D
Sbjct: 221 WTVKTKD 227
>pdb|2GTX|A Chain A, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|2GTX|B Chain B, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|3D27|A Chain A, E. Coli Methionine Aminopeptidase With Fe Inhibitor W29
Length = 261
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 25/187 (13%)
Query: 204 AYPPVVASGDNANVIHYVHNNQKCCH-GDLLLMDAGCELNGYDSDITRTWPISGQFTDHQ 262
YP V N V H + ++ K GD++ +D +G+ D ++ + I G+ T
Sbjct: 61 GYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF-IVGKPTIMG 119
Query: 263 KVLYEIVLDTQLKLLKLCEKSDSALNF-IYRYAYVFQIGFKFCPHHSSHYLGMDVHDCAA 321
+ L I ++ L++ + + +V GF + H +G H+
Sbjct: 120 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHE--- 176
Query: 322 IPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRG 381
EP + +D + + PGM FT+EP V K KE R G
Sbjct: 177 ---------------EPQVLHYDSRET--NVVLKPGMTFTIEPMVNAGK--KEIRTMKDG 217
Query: 382 MGIRIED 388
++ +D
Sbjct: 218 WTVKTKD 224
>pdb|2P98|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye7
pdb|2P9A|A Chain A, E. Coli Methionine Aminopeptidase Dimetalated With
Inhibitor Ye6
pdb|2Q92|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B23
pdb|2Q94|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A04
Length = 262
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 25/187 (13%)
Query: 204 AYPPVVASGDNANVIHYVHNNQKCCH-GDLLLMDAGCELNGYDSDITRTWPISGQFTDHQ 262
YP V N V H + ++ K GD++ +D +G+ D ++ + I G+ T
Sbjct: 63 GYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF-IVGKPTIMG 121
Query: 263 KVLYEIVLDTQLKLLKLCEKSDSALNF-IYRYAYVFQIGFKFCPHHSSHYLGMDVHDCAA 321
+ L I ++ L++ + + +V GF + H +G H+
Sbjct: 122 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHE--- 178
Query: 322 IPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRG 381
EP + +D + + PGM FT+EP V K KE R G
Sbjct: 179 ---------------EPQVLHYDSRE--TNVVLKPGMTFTIEPMVNAGK--KEIRTMKDG 219
Query: 382 MGIRIED 388
++ +D
Sbjct: 220 WTVKTKD 226
>pdb|1XNZ|A Chain A, Crystal Structure Of Mn(Ii) Form Of E. Coli. Methionine
Aminopeptidase In Complex With
5-(2-Chlorophenyl)furan-2- Carboxylic Acid
pdb|2BB7|A Chain A, Mn Form Of E. Coli Methionine Aminopeptidase In Complex
With A Quinolinyl Sulfonamide Inhibitor
pdb|2EVC|A Chain A, Crystal Structure Of E. Coli. Methionine Amino Peptidase
In Complex With 5-(2-(trifluoromethyl)phenyl)furan-2-
Carboxylic Acid
pdb|2EVM|A Chain A, Crystal Structure Of Methionine Aminopeptidase In Complex
With 5-(2,5-Dichlorophenyl)furan-2-Carboxylic Acid
pdb|2EVO|A Chain A, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|2EVO|B Chain B, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|1MAT|A Chain A, Structure Of The Cobalt-Dependent Methionine
Aminopeptidase From Escherichia Coli: A New Type Of
Proteolytic Enzyme
Length = 264
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 25/187 (13%)
Query: 204 AYPPVVASGDNANVIHYVHNNQKCCH-GDLLLMDAGCELNGYDSDITRTWPISGQFTDHQ 262
YP V N V H + ++ K GD++ +D +G+ D ++ + I G+ T
Sbjct: 64 GYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMF-IVGKPTIMG 122
Query: 263 KVLYEIVLDTQLKLLKLCEKSDSALNF-IYRYAYVFQIGFKFCPHHSSHYLGMDVHDCAA 321
+ L I ++ L++ + + +V GF + H +G H+
Sbjct: 123 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHE--- 179
Query: 322 IPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRG 381
EP + +D + + PGM FT+EP V K KE R G
Sbjct: 180 ---------------EPQVLHYDSRE--TNVVLKPGMTFTIEPMVNAGK--KEIRTMKDG 220
Query: 382 MGIRIED 388
++ +D
Sbjct: 221 WTVKTKD 227
>pdb|3MZN|A Chain A, Crystal Structure Of Probable Glucarate Dehydratase From
Chromohalobacter Salexigens Dsm 3043
pdb|3MZN|B Chain B, Crystal Structure Of Probable Glucarate Dehydratase From
Chromohalobacter Salexigens Dsm 3043
pdb|3NFU|A Chain A, Crystal Structure Of Probable Glucarate Dehydratase From
Chromohalobacter Salexigens Dsm 3043 Complexed With
Magnesium
pdb|3NFU|B Chain B, Crystal Structure Of Probable Glucarate Dehydratase From
Chromohalobacter Salexigens Dsm 3043 Complexed With
Magnesium
Length = 450
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 334 FTVEPGMDVHDCAAIPRTIPV-------APGMVFTVEPGVYISKDCKETRPEFRGMGIRI 386
F + M H AA P I G T EP + +D K T P+ G+GI +
Sbjct: 342 FDISLAMMTHVAAACPGEITAIDTHWIWQDGQRITREP--FQIRDGKLTVPKTPGLGIEL 399
Query: 387 EDDILIDKSSNVENL 401
+DD L++ + L
Sbjct: 400 DDDKLMEAHETYKRL 414
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,033,506
Number of Sequences: 62578
Number of extensions: 560923
Number of successful extensions: 1327
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1136
Number of HSP's gapped (non-prelim): 135
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)