RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy247
(413 letters)
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 244 bits (625), Expect = 3e-79
Identities = 100/248 (40%), Positives = 132/248 (53%), Gaps = 46/248 (18%)
Query: 177 FSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMD 236
S+PG +E+EL +F+YE R RGA+ LAY +VA+G NA ++HYVHN+Q GDL+L+D
Sbjct: 21 ASRPGMSEYELEAEFEYEFRSRGAR-LAYSYIVAAGSNAAILHYVHNDQPLKDGDLVLID 79
Query: 237 AGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSALNFIYRYAY- 295
AG E GY SDITRT+P++G+FTD Q+ LYE VL Q + C K + I+ A+
Sbjct: 80 AGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLAAQKAAIAAC-KPGVSYEDIHLLAHR 138
Query: 296 VFQIGFK--------------------FCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFT 335
V G K F PH HYLG+DVHD R
Sbjct: 139 VLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHYLGLDVHDVGGYLRY---------- 188
Query: 336 VEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILIDKS 395
+ R P+ PGMV T+EPG+Y D + FRG GIRIEDD+L+ +
Sbjct: 189 ------------LRRARPLEPGMVITIEPGIYFIPDLLDVPEYFRGGGIRIEDDVLVTED 236
Query: 396 SNVENLSA 403
ENL+
Sbjct: 237 GP-ENLTR 243
Score = 104 bits (262), Expect = 6e-26
Identities = 40/81 (49%), Positives = 59/81 (72%), Gaps = 1/81 (1%)
Query: 96 EMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANV 155
E+MR+ C I++E + + S+PG +E+EL +F+YE R RGA+ LAY +VA+G NA +
Sbjct: 2 ELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGAR-LAYSYIVAAGSNAAI 60
Query: 156 IHYVHNNQKCCHGDLLLMDAG 176
+HYVHN+Q GDL+L+DAG
Sbjct: 61 LHYVHNDQPLKDGDLVLIDAG 81
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 190 bits (485), Expect = 4e-56
Identities = 139/446 (31%), Positives = 206/446 (46%), Gaps = 94/446 (21%)
Query: 7 YIFRQNTDFFYFTGCLEPDSAVVIHGASDENFKSELFVKRKDAKAELWDGPRTGK----A 62
Y +RQN+DF+YFTG EP++ +V+ + D + S LF + +D AE+W G R G+
Sbjct: 39 YPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPE 98
Query: 63 QLNGYVPRRKDYSWNVPKQLFHQLR----LYKSDSEQEMMRETCRIASE----GFKE--- 111
+L V R +S + +QL+ L +Y + E E A E G ++
Sbjct: 99 KLG--VDRALPFS-EINQQLYQLLNGLDVVYHAQGEYAYADEIVFSALEKLRKGSRQNLT 155
Query: 112 ---TIGFSKPGRTEHELF-TKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCH 167
T+ +P E LF + + V R +I A A +KC
Sbjct: 156 APATLTDWRPWVHEMRLFKSPEEIAVLRRAGEISALAHTRAM-------------EKC-- 200
Query: 168 GDLLLMDAGFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKC 227
+PG E++L + +E GA+ +Y +V SG+N ++HY N +
Sbjct: 201 -----------RPGMFEYQLEGEIHHEFNRHGARYPSYNTIVGSGENGCILHYTENESEM 249
Query: 228 CHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSAL 287
GDL+L+DAGCE GY DITRT+P++G+FT Q+ +Y+IVL++ L+L S
Sbjct: 250 RDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREIYDIVLESLETSLRLYRPGTSIR 309
Query: 288 NFIYRYAYVFQIGF--------------------KFCPHHSSHYLGMDVHDCAAIPRTIP 327
+ G F H SH+LG+DVHD
Sbjct: 310 EVTGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPFFMHGLSHWLGLDVHDVGVY----- 364
Query: 328 VAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIE 387
G D R+ + PGMV TVEPG+YI+ D + ++RG+GIRIE
Sbjct: 365 -----------GQD--------RSRILEPGMVLTVEPGLYIAPDA-DVPEQYRGIGIRIE 404
Query: 388 DDILIDKSSNVENLSAMCPKNIDEIE 413
DDI+I ++ N ENL+A K DEIE
Sbjct: 405 DDIVITETGN-ENLTASVVKKPDEIE 429
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 153 bits (390), Expect = 8e-45
Identities = 72/220 (32%), Positives = 108/220 (49%), Gaps = 37/220 (16%)
Query: 179 KPGRTEHELFTKFDYE-VRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDA 237
+PG TE EL + + + GA+ A+PP+VASG NA V HY+ +++ GDL+L+D
Sbjct: 22 RPGVTERELAAELEAAFLARGGARGPAFPPIVASGPNAAVPHYIPSDRVLKDGDLVLIDV 81
Query: 238 GCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSALNFIYRYA--Y 295
G E +GY SDITRT+ + G+ T Q+ LYE VL+ Q + K + A
Sbjct: 82 GAEYDGYHSDITRTFVV-GKPTPEQRELYEAVLEAQEAAIAAV-KPGVTGGDVDAAAREV 139
Query: 296 VFQIGF-KFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPV 354
+ + G+ ++ PH H +G+DVHD P + +
Sbjct: 140 LEEGGYGEYFPHGLGHGIGLDVHDEG-----------------PYISRGGN-----DRVL 177
Query: 355 APGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILIDK 394
PGMVFT+EPG+Y G+RIED +L+ +
Sbjct: 178 EPGMVFTIEPGIYFIPGWG---------GVRIEDTVLVTE 208
Score = 81.2 bits (201), Expect = 8e-18
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 96 EMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYE-VRMRGAQILAYPPVVASGDNAN 154
E+MR+ RIA+ + + +PG TE EL + + + GA+ A+PP+VASG NA
Sbjct: 1 ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAAFLARGGARGPAFPPIVASGPNAA 60
Query: 155 VIHYVHNNQKCCHGDLLLMDAG 176
V HY+ +++ GDL+L+D G
Sbjct: 61 VPHYIPSDRVLKDGDLVLIDVG 82
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 155 bits (394), Expect = 2e-43
Identities = 78/252 (30%), Positives = 122/252 (48%), Gaps = 52/252 (20%)
Query: 173 MDAGFS--KPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHG 230
++A +PG TE E+ + +Y +R GA+ ++ +VASG+NA + HY +++K G
Sbjct: 174 LEAALEAIRPGMTEAEIAAELEYALRKGGAEGPSFDTIVASGENAALPHYTPSDRKLRDG 233
Query: 231 DLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKS------- 283
DL+L+D G NGY SDITRT+PI G+ +D Q+ +YE VL+ Q +
Sbjct: 234 DLVLIDLGGVYNGYCSDITRTFPI-GKPSDEQREIYEAVLEAQEAAIAAIRPGVTGGEVD 292
Query: 284 DSALNFIYRYAYVFQIGFKFCPHHSSHYLG--MDVHDCAAIPRTIPVAPGVVFTVEPGMD 341
+A + + Y H + H +G +DVH+ + PG D
Sbjct: 293 AAARQVLEKAGYGLYF-----LHGTGHGVGFVLDVHEHPQY-------------LSPGSD 334
Query: 342 VHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILIDKSSNVENL 401
+ PGMVF++EPG+YI G G+RIED +L+ + E L
Sbjct: 335 ----------TTLEPGMVFSIEPGIYIP----------GGGGVRIEDTVLVTE-DGFEVL 373
Query: 402 SAMCPKNIDEIE 413
+ + PK + IE
Sbjct: 374 TRV-PKELLVIE 384
Score = 96.0 bits (239), Expect = 8e-22
Identities = 34/95 (35%), Positives = 56/95 (58%)
Query: 82 LFHQLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQIL 141
L +LRL KS +E +R+ IA + + +PG TE E+ + +Y +R GA+
Sbjct: 147 LVDRLRLIKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAEGP 206
Query: 142 AYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 176
++ +VASG+NA + HY +++K GDL+L+D G
Sbjct: 207 SFDTIVASGENAALPHYTPSDRKLRDGDLVLIDLG 241
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 137 bits (348), Expect = 1e-38
Identities = 76/223 (34%), Positives = 113/223 (50%), Gaps = 47/223 (21%)
Query: 179 KPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 238
KPG TE E+ + +Y +R GA+ ++ +VASG N+ + H V +++K GDL+L+D G
Sbjct: 23 KPGMTEREVAAELEYFMRKLGAEGPSFDTIVASGPNSALPHGVPSDRKIEEGDLVLIDFG 82
Query: 239 CELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLK-------LCEKSDSALNFIY 291
+GY SDITRT + G+ +D K +YEIVL+ Q +K E +A + I
Sbjct: 83 AIYDGYCSDITRTVAV-GEPSDELKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAARDVIE 141
Query: 292 RYAYVFQIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRT 351
Y G F H + H +G++VH+ AP + PG D
Sbjct: 142 EAGY----GEYF-IHRTGHGVGLEVHE----------APYIS----PGSDD--------- 173
Query: 352 IPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILIDK 394
+ GMVFT+EPG+YI P G+RIEDD+L+ +
Sbjct: 174 -VLEEGMVFTIEPGIYI--------PGK--GGVRIEDDVLVTE 205
Score = 72.5 bits (179), Expect = 7e-15
Identities = 32/81 (39%), Positives = 53/81 (65%)
Query: 96 EMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANV 155
E++R+ RIA + F+E + F KPG TE E+ + +Y +R GA+ ++ +VASG N+ +
Sbjct: 2 ELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAEGPSFDTIVASGPNSAL 61
Query: 156 IHYVHNNQKCCHGDLLLMDAG 176
H V +++K GDL+L+D G
Sbjct: 62 PHGVPSDRKIEEGDLVLIDFG 82
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 98.3 bits (245), Expect = 6e-24
Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 48/221 (21%)
Query: 179 KPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 238
+PG TE E+ + +R G A P +V SG + HY ++++ GDL+L+D G
Sbjct: 23 RPGVTEAEVAAAIEQALRAAGGY-PAGPTIVGSGARTALPHYRPDDRRLQEGDLVLVDLG 81
Query: 239 CELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKL------CEKSDSALN-FIY 291
+GY +D+TRT+ I G+ +D Q+ LYE V + Q L E+ D+A +
Sbjct: 82 GVYDGYHADLTRTFVI-GEPSDEQRELYEAVREAQEAALAALRPGVTAEEVDAAAREVLE 140
Query: 292 RYAYVFQIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRT 351
+ H + H +G+++H+ +
Sbjct: 141 EHGL-----GPNFGHRTGHGIGLEIHEPPVLKAG------------------------DD 171
Query: 352 IPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILI 392
+ PGMVF VEPG+Y+ G G+RIED +L+
Sbjct: 172 TVLEPGMVFAVEPGLYLPG----------GGGVRIEDTVLV 202
Score = 59.0 bits (143), Expect = 3e-10
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 96 EMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANV 155
+R+ IA +PG TE E+ + +R G A P +V SG +
Sbjct: 2 ARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGY-PAGPTIVGSGARTAL 60
Query: 156 IHYVHNNQKCCHGDLLLMDAGFSKPG 181
HY ++++ GDL+L+D G G
Sbjct: 61 PHYRPDDRRLQEGDLVLVDLGGVYDG 86
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 85.8 bits (212), Expect = 2e-18
Identities = 65/244 (26%), Positives = 110/244 (45%), Gaps = 52/244 (21%)
Query: 177 FSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMD 236
F + G +E E+ + ++ +R +GA+ ++ +VASG + H +++ G+ + +D
Sbjct: 153 FIQAGMSEREIAAELEWFMRQQGAEKASFDTIVASGWRGALPHGKASDKIVAAGEFVTLD 212
Query: 237 AGCELNGYDSDITRTWPISGQFTDHQK----VLYEIVLDTQLKLLKL------CEKSDSA 286
G GY SD+TRT ++G+ + +Y+IVL QL + C++ D A
Sbjct: 213 FGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDA 272
Query: 287 L-NFIYRYAYVFQIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDC 345
I Y + H++ H +G++VH+ PR P
Sbjct: 273 ARRVITEAGYG-----DYFGHNTGHAIGIEVHED---PRFSPR----------------- 307
Query: 346 AAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILIDKSSNVENLSAMC 405
T + PGM+ TVEPG+Y+ +G G+RIED +L+ E L AM
Sbjct: 308 ----DTTTLQPGMLLTVEPGIYLPG---------QG-GVRIEDVVLV-TPQGAEVLYAM- 351
Query: 406 PKNI 409
PK +
Sbjct: 352 PKTV 355
Score = 50.3 bits (120), Expect = 9e-07
Identities = 25/91 (27%), Positives = 47/91 (51%)
Query: 86 LRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQILAYPP 145
LR K+ E E +R C IA G + F + G +E E+ + ++ +R +GA+ ++
Sbjct: 124 LRQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKASFDT 183
Query: 146 VVASGDNANVIHYVHNNQKCCHGDLLLMDAG 176
+VASG + H +++ G+ + +D G
Sbjct: 184 IVASGWRGALPHGKASDKIVAAGEFVTLDFG 214
>gnl|CDD|198079 smart01011, AMP_N, Aminopeptidase P, N-terminal domain. This
domain is structurally very similar to the creatinase
N-terminal domain. However, little or no sequence
similarity exists between the two families.
Length = 135
Score = 80.0 bits (198), Expect = 4e-18
Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 5 IPYIFRQNTDFFYFTGCLEPDSAVVIHGASDENFKSELFVKRKDAKAELWDGPRTGKA 62
Y FRQ++DF+Y TG EPD+ +V+ S KS LFV +D + ELWDGPR G
Sbjct: 37 TDYPFRQDSDFYYLTGFDEPDAVLVLD-PSGGGGKSTLFVPPRDPEDELWDGPRLGLE 93
>gnl|CDD|218491 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain. This
domain is structurally very similar to the creatinase
N-terminal domain (pfam01321). However, little or no
sequence similarity exists between the two families.
Length = 134
Score = 77.6 bits (192), Expect = 2e-17
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 5 IPYIFRQNTDFFYFTGCLEPDSAVVIHGASDENFKSELFVKRKDAKAELWDGPRTGKA 62
Y FRQ++DF+Y TG EPD+ +V+ + KS LFV KD + E+WDG R G
Sbjct: 37 TEYPFRQDSDFYYLTGFNEPDAVLVLKD--GDTGKSTLFVPPKDPEYEIWDGRRPGPE 92
>gnl|CDD|237444 PRK13607, PRK13607, proline dipeptidase; Provisional.
Length = 443
Score = 73.0 bits (180), Expect = 5e-14
Identities = 67/241 (27%), Positives = 95/241 (39%), Gaps = 62/241 (25%)
Query: 205 YPPVVASGDNANVIHYVH-NNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQK 263
Y +VA ++A V+HY ++Q L+DAG E NGY +DITRT+
Sbjct: 214 YGNIVALNEHAAVLHYTKLDHQAPAEMRSFLIDAGAEYNGYAADITRTYA-----AKEDN 268
Query: 264 VLYEIVLDTQLKLLKLCEK-------SDSALNFIYRYAYV---FQI------------GF 301
++ D + L L D + R A + FQI G
Sbjct: 269 DFAALIKDVNKEQLALIATMKPGVSYVDLHIQMHQRIAKLLRKFQIVTGLSEEAMVEQGI 328
Query: 302 K--FCPHHSSHYLGMDVHDCA---AIPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAP 356
F PH H LG+ VHD A R +A P + H R + P
Sbjct: 329 TSPFFPHGLGHPLGLQVHDVAGFMQDDRGTHLAA-------P--EKHPYLRCTRVL--EP 377
Query: 357 GMVFTVEPGVYI-------------SKDCKETR-PEFR--GMGIRIEDDILIDKSSNVEN 400
GMV T+EPG+Y SK + + G GIRIED++++ + VEN
Sbjct: 378 GMVLTIEPGLYFIDSLLAPLREGPFSKHFNWQKIDALKPFG-GIRIEDNVVV-HENGVEN 435
Query: 401 L 401
+
Sbjct: 436 M 436
Score = 33.7 bits (78), Expect = 0.17
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 19/109 (17%)
Query: 79 PKQLFHQL---RLYKSDSEQEMMRETCRIASEG-------FKETIGFSKPGRTEHELFTK 128
PK + L R YK+D E MRE +IA G F+ G +E ++
Sbjct: 148 PKGVLDYLHYHRAYKTDYELACMREAQKIAVAGHRAAKEAFRA-------GMSEFDINLA 200
Query: 129 FDYEVRMRGAQILAYPPVVASGDNANVIHYVH-NNQKCCHGDLLLMDAG 176
+ R + Y +VA ++A V+HY ++Q L+DAG
Sbjct: 201 YLTATGQRDND-VPYGNIVALNEHAAVLHYTKLDHQAPAEMRSFLIDAG 248
>gnl|CDD|238518 cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known
as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid,
including proline, that is linked with proline, even
from a dipeptide or tripeptide.
Length = 224
Score = 69.1 bits (170), Expect = 2e-13
Identities = 50/210 (23%), Positives = 84/210 (40%), Gaps = 51/210 (24%)
Query: 203 LAYPPVVASGDNANVIHYVHNNQKC---CHGDLLLMDAGCE-LNGYDSDITRTWPISGQF 258
L++ + G N ++HY + L L+D+G + L+G +DITRT + G+
Sbjct: 52 LSFDTISGFGPNGAIVHYSPTEESNRKISPDGLYLIDSGGQYLDG-TTDITRTVHL-GEP 109
Query: 259 TDHQKVLYEIVLDTQLKLLKLCEKSD---SALNFIYRYAYVFQIGFKFCPH---HS-SHY 311
T QK Y +VL + L + S L+ + R +++ G + H H +
Sbjct: 110 TAEQKRDYTLVLKGHIALARAKFPKGTTGSQLDALAR-QPLWKAGLDY-GHGTGHGVGSF 167
Query: 312 LGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKD 371
L VH+ P + P +P+ GM+ + EPG Y
Sbjct: 168 LN--VHE----------GPQSISPA------------PNNVPLKAGMILSNEPGYYK--- 200
Query: 372 CKETRPEFRGM-GIRIEDDILIDKSSNVEN 400
G GIRIE+ +L+ ++ E
Sbjct: 201 --------EGKYGIRIENLVLVVEAETTEF 222
Score = 32.9 bits (76), Expect = 0.21
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 141 LAYPPVVASGDNANVIHYVHNNQKC---CHGDLLLMDAG 176
L++ + G N ++HY + L L+D+G
Sbjct: 52 LSFDTISGFGPNGAIVHYSPTEESNRKISPDGLYLIDSG 90
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 47.1 bits (112), Expect = 7e-06
Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 19/150 (12%)
Query: 205 YPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKV 264
+P + + N + H + N+ +GD++ +D C ++GY D +R I G+ ++ +K
Sbjct: 104 FPKTICTSLNEVICHGIPNDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMI-GEVSEIKKK 162
Query: 265 LYEIVLDT---QLKLLK----LCEKSDSALNFIYRYAYVFQIGFKFCPHHSSHYLGMDVH 317
+ + L+ + +LK L E + N +Y GF H +G+ H
Sbjct: 163 VCQASLECLNAAIAILKPGIPLYEIGEVIENCADKY------GFSVVDQFVGHGVGIKFH 216
Query: 318 DCAAIPR-----TIPVAPGVVFTVEPGMDV 342
+ +P IP+APG++FT+EP ++V
Sbjct: 217 ENPYVPHHRNSSKIPLAPGMIFTIEPMINV 246
Score = 29.4 bits (66), Expect = 3.4
Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 69 PRRKDYSWNVPKQLF-HQLRLYKSDSEQ-EMMRETCRIASEGFKETIGFSKPGRTEHELF 126
P + + S KQL+ Q + EQ E +R+ C++ + +K G T +EL
Sbjct: 21 PTKPERSLENLKQLYASQYDIIIKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNEL- 79
Query: 127 TKFDYEVRMRGAQILA--------YPPVVASGDNANVIHYVHNNQKCCHGDLLLMD 174
+ E+ I A +P + + N + H + N+ +GD++ +D
Sbjct: 80 DELSRELHKEYNAIPAPLNYGSPPFPKTICTSLNEVICHGIPNDIPLKNGDIMNID 135
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 38.9 bits (91), Expect = 0.003
Identities = 36/157 (22%), Positives = 59/157 (37%), Gaps = 40/157 (25%)
Query: 205 YPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKV 264
+P V N VIH + + + GD++ +D G +GY D +T+ + G+ +
Sbjct: 62 FPGSVCISVNEVVIHGIPDKKVLKDGDIVNIDVGVIYDGYHGDTAKTFLV-GKISP---- 116
Query: 265 LYEIVLDTQLKLLKLCEKSDSAL-----------------NFIYRYAYVFQIGFKFCPHH 307
+ KL E ++ +L I +YA GF +
Sbjct: 117 ----------EAEKLLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAK--GFSVVREY 164
Query: 308 SSHYLGMDVHDCAAIP-----RTIPV-APGVVFTVEP 338
H +G H+ IP T G+VFT+EP
Sbjct: 165 CGHGIGRKFHEEPQIPNYGKKFTNVRLKEGMVFTIEP 201
Score = 29.2 bits (66), Expect = 3.8
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 90 KSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQ-----ILAYP 144
KS E E +R+ R+A+E +E KPG + EL + GA+ +P
Sbjct: 4 KSPDEIEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYYGFP 63
Query: 145 PVVASGDNANVIHYVHNNQKCCHGDLLLMDAGFSKPG 181
V N VIH + + + GD++ +D G G
Sbjct: 64 GSVCISVNEVVIHGIPDKKVLKDGDIVNIDVGVIYDG 100
>gnl|CDD|171806 PRK12897, PRK12897, methionine aminopeptidase; Reviewed.
Length = 248
Score = 38.5 bits (89), Expect = 0.004
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 20/204 (9%)
Query: 154 NVIHYVHNNQK---CCHGDLLLMDAGFSKPGRTEHELFTKFDYEVRMRGAQ-----ILAY 205
N I +H + K CH ++ A KPG T E+ T + + GA Y
Sbjct: 8 NEIDLMHESGKLLASCHREI----AKIMKPGITTKEINTFVEAYLEKHGATSEQKGYNGY 63
Query: 206 PPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVL 265
P + + N + H + GD++ +D LNG SD T+ + G+ +D + L
Sbjct: 64 PYAICASVNDEMCHAFPADVPLTEGDIVTIDMVVNLNGGLSDSAWTYRV-GKVSDEAEKL 122
Query: 266 YEIVLDTQLKLLKLCEKSDSALNFIYRY-AYVFQIGFKFCPHHSSHYLGMDVHDCAAI-- 322
+ + K + + + Y +YV GF + H +G ++H+ AI
Sbjct: 123 LLVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSVARDFTGHGIGKEIHEEPAIFH 182
Query: 323 ----PRTIPVAPGVVFTVEPGMDV 342
+ + G+V T+EP ++V
Sbjct: 183 FGKQGQGPELQEGMVITIEPIVNV 206
Score = 29.2 bits (65), Expect = 3.2
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 90 KSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQ-----ILAYP 144
K+ +E ++M E+ ++ + +E KPG T E+ T + + GA YP
Sbjct: 5 KTKNEIDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYNGYP 64
Query: 145 PVVASGDNANVIHYVHNNQKCCHGDLLLMD 174
+ + N + H + GD++ +D
Sbjct: 65 YAICASVNDEMCHAFPADVPLTEGDIVTID 94
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 37.8 bits (87), Expect = 0.009
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 221 VHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEIV 269
+ +N K C GDL+ D G +++GY +DI RT+ + G+ + + +Y+ +
Sbjct: 164 IPSNTKACSGDLIKFDCGVDVDGYGADIARTF-VVGEPPEITRKIYQTI 211
Score = 35.8 bits (82), Expect = 0.029
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 82 LFHQLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQIL 141
+F++LR+ KS E + +R++ I G E + G T EL + V +
Sbjct: 88 IFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETHF 147
Query: 142 AYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGFSKPG 181
+ +++ G + + + +N K C GDL+ D G G
Sbjct: 148 SRFHLISVGADFSP-KLIPSNTKACSGDLIKFDCGVDVDG 186
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 37.8 bits (87), Expect = 0.009
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 221 VHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEIV 269
+ +N K C GDL+ D G +++GY +DI RT+ + G+ + + +Y+ +
Sbjct: 247 IPSNTKACSGDLIKFDCGVDVDGYGADIARTF-VVGEPPEITRKIYQTI 294
Score = 35.8 bits (82), Expect = 0.031
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 82 LFHQLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQIL 141
+F++LR+ KS E + +R++ I G E + G T EL + V +
Sbjct: 171 IFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVMSKSETHF 230
Query: 142 AYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGFSKPG 181
+ +++ G + + + +N K C GDL+ D G G
Sbjct: 231 SRFHLISVGADFSP-KLIPSNTKACSGDLIKFDCGVDVDG 269
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 34.1 bits (79), Expect = 0.092
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 217 VIHYVHNNQKCC-HGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEIV---LDT 272
V H + ++K GD++ +D G ++GY D T+ + + K L E L
Sbjct: 76 VAHGIPGDKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAKRLLEATKEALYA 135
Query: 273 QLKLLK----LCEKSDSALNFIYRYAYVFQIGFKFCPHHSSHYLGMDVHDCAAIP----- 323
++ +K L + I YA GF + + H +G ++H+ +IP
Sbjct: 136 GIEAVKPGARLGDIGR----AIQEYAESR--GFSVVRNLTGHGIGRELHEEPSIPNYGKD 189
Query: 324 -RTIPVAPGVVFTVEP 338
+ + G+VF +EP
Sbjct: 190 GTGVRLKEGMVFAIEP 205
Score = 30.3 bits (69), Expect = 1.8
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 90 KSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHEL 125
K+ E E MRE +IA++ KE KPG T EL
Sbjct: 6 KTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLEL 41
>gnl|CDD|238524 cd01091, CDC68-like, Related to aminopeptidase P and aminopeptidase
M, a member of this domain family is present in cell
division control protein 68, a transcription factor.
Length = 243
Score = 33.5 bits (77), Expect = 0.13
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 13/84 (15%)
Query: 205 YPPVVASGDN------ANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQF 258
YPP++ SG N ++ + + ++ G Y S+I RT+ I
Sbjct: 65 YPPIIQSGGNYDLLKSSSSSDKLLYHFGV-----IICSLGARYKSYCSNIARTFLIDP-- 117
Query: 259 TDHQKVLYEIVLDTQLKLLKLCEK 282
T Q+ Y +L Q ++LK +
Sbjct: 118 TSEQQKNYNFLLALQEEILKELKP 141
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 32.9 bits (76), Expect = 0.26
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 30/138 (21%)
Query: 224 NQKCCHG----------DLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEIV---L 270
N+ CHG D++ +D G EL+GY D RT+ + G+ ++ K L E+ L
Sbjct: 63 NEVVCHGIPDDRVLKDGDIVNIDVGVELDGYHGDSARTFIV-GEVSEEAKKLVEVTEEAL 121
Query: 271 DTQLKLLK----LCEKSDSALNFIYRYAYVFQIGFKFCPHHSSHYLGMDVHDCAAIP--- 323
++ +K + + + I +YA G+ H +G H+ IP
Sbjct: 122 YKGIEAVKPGNRIGDIG----HAIEKYAEKN--GYSVVREFGGHGIGRKFHEEPQIPNYG 175
Query: 324 ---RTIPVAPGVVFTVEP 338
+ PG+VFT+EP
Sbjct: 176 RPGTGPKLKPGMVFTIEP 193
Score = 28.6 bits (65), Expect = 4.7
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 96 EMMRETCRIASEGFKETIGFSKPGRTEHEL 125
E MRE RI +E E KPG T EL
Sbjct: 2 EGMREAGRIVAEVLDELAKAIKPGVTTKEL 31
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 31.1 bits (70), Expect = 1.1
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 205 YPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKV 264
Y P++ SG + ++ + GD++L+ G NGY S+++RT Q+
Sbjct: 245 YTPIIQSGGSIDLTPSAFSFPMELTGDVVLLSIGIRYNGYCSNMSRTILTDP--DSEQQK 302
Query: 265 LYEIVLDTQLKLLKLC 280
YE + Q +L L
Sbjct: 303 NYEFLYMLQKYILGLV 318
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 30.4 bits (68), Expect = 1.6
Identities = 44/175 (25%), Positives = 65/175 (37%), Gaps = 49/175 (28%)
Query: 230 GDLLLMDAGCELNGYDSDITRTW------PISGQFTDHQKVLYEIVLDTQLKLLKLCEKS 283
GDL+ D G ++ GY +D+ RT+ ++ Q D + +E +L +KL
Sbjct: 255 GDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMVAPGVKLKAVF 314
Query: 284 DSALNFIYRYAYVFQIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVH 343
DS + I PH++ +LG GV +E V
Sbjct: 315 DSTMAVIKTSGL---------PHYNRGHLGH--------------GDGVFLGLEEVPFVS 351
Query: 344 DCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMG---IRIEDDILIDKS 395
A T PGMV ++E Y G+G I +ED ILI S
Sbjct: 352 TQA----TETFCPGMVLSLETPYY-------------GIGVGSIMLEDMILITDS 389
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
Length = 396
Score = 30.6 bits (69), Expect = 1.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 90 KSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHEL 125
K+ + + MRETCRIA E KPG T E+
Sbjct: 138 KTPEQIQRMRETCRIAREVLDAAARAIKPGVTTDEI 173
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 30.2 bits (69), Expect = 1.9
Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 38/166 (22%)
Query: 224 NQKCCHG----------DLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQ 273
N++ HG DL+ +D L+GY D T+ + + +K + +
Sbjct: 78 NEEVAHGIPGPRVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVSEEAEK----LCRVAE 133
Query: 274 LKLLKLCE--KSDSALNFIYR--YAYVFQIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVA 329
L + K+ LN I R + + G+ + H +G +H+
Sbjct: 134 EALWAGIKQVKAGRPLNDIGRAIEDFAKKNGYSVVRDLTGHGVGRSLHE----------- 182
Query: 330 PGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYI-SKDCKE 374
EP + + +P + + PGM VEP + + +KD +
Sbjct: 183 -------EPSVILTYTDPLPNRL-LRPGMTLAVEPFLNLGAKDAET 220
Score = 30.2 bits (69), Expect = 1.9
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 90 KSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHEL 125
KS E E MR+ RI + KE +PG T EL
Sbjct: 11 KSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKEL 46
>gnl|CDD|238523 cd01090, Creatinase, Creatine amidinohydrolase. E.C.3.5.3.3.
Hydrolyzes creatine to sarcosine and urea.
Length = 228
Score = 29.8 bits (67), Expect = 2.0
Identities = 57/236 (24%), Positives = 95/236 (40%), Gaps = 61/236 (25%)
Query: 192 DYEVRMRGAQIL------AYPPV--------VASGDNANVIHYVHNNQKCCHGDLLLMDA 237
+YEV + G Q + +P V SG N + H N+K GD+L ++
Sbjct: 28 EYEVALAGTQAMVREIAKTFPEVELMDTWTWFQSGINTDGAHNPVTNRKVQRGDILSLNC 87
Query: 238 GCELNGYDSDITRTWPISGQFTDHQKVLYEI---VLDTQLKLLK---LCEKSDSALNFIY 291
+ GY + + RT + +D ++E V + L+L+K C+ + LN +Y
Sbjct: 88 FPMIAGYYTALERTL-FLDEVSDAHLKIWEANVAVHERGLELIKPGARCKDIAAELNEMY 146
Query: 292 RYAYVFQIGFKFCPHHS----SHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDV-HDCA 346
R + + F HS SHY G E G+++ D
Sbjct: 147 REHDLLRYR-TFGYGHSFGVLSHYYGR----------------------EAGLELREDID 183
Query: 347 AIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILIDKSSNVENLS 402
+ + PGMV ++EP + + E +P G G E DIL+ + EN++
Sbjct: 184 TV-----LEPGMVVSMEPMIMLP----EGQP---GAGGYREHDILVINENGAENIT 227
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 29.7 bits (68), Expect = 2.7
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 90 KSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHEL 125
K+ E E MR R+A+E E KPG T EL
Sbjct: 6 KTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKEL 41
Score = 28.2 bits (64), Expect = 7.4
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 10/41 (24%)
Query: 224 NQKCCHG----------DLLLMDAGCELNGYDSDITRTWPI 254
N+ CHG D++ +D +GY D +RT+ +
Sbjct: 73 NEVVCHGIPSDKVLKEGDIVNIDVTVIKDGYHGDTSRTFGV 113
>gnl|CDD|212694 cd11760, SH3_MIA_like, Src Homology 3 domain of Melanoma
Inhibitory Activity protein and similar proteins. MIA
is a single domain protein that adopts a SH3
domain-like fold; it contains an additional
antiparallel beta sheet and two disulfide bonds
compared to classical SH3 domains. MIA is secreted from
malignant melanoma cells and it plays an important role
in melanoma development and invasion. MIA is expressed
by chondrocytes in normal tissues and may be important
in the cartilage cell phenotype. Unlike classical SH3
domains, MIA does not bind proline-rich ligands. MIA is
a member of the recently identified family that also
includes MIA-like (MIAL), MIA2, and MIA3 (also called
TANGO); the biological functions of this family are not
yet fully understood.
Length = 76
Score = 27.1 bits (60), Expect = 3.9
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 37 NFKSE----LFVKRKDAKAELWDGPRTGKAQLNGYVPR 70
NFK ++ K + +LW G G A L GY P+
Sbjct: 29 NFKKGDTIYVYSKLAGERQDLWAGSVGGDAGLFGYFPK 66
>gnl|CDD|214954 smart00984, UDPG_MGDP_dh_C, UDP binding domain. The
UDP-glucose/GDP-mannose dehydrogenases are a small group
of enzymes which possesses the ability to catalyse the
NAD-dependent 2-fold oxidation of an alcohol to an acid
without the release of an aldehyde intermediate.
Length = 99
Score = 27.5 bits (62), Expect = 4.3
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 14/73 (19%)
Query: 136 RGAQILAYPPVVASGDNANVIHYVHNNQKCCHG--DLLLMDAGFSKPGRTEHELFTKFDY 193
GA+++ Y P + YV + ++ G +++ TEH+ F D
Sbjct: 29 AGAEVVVYDPYAMEEAREYGLTYVSDLEEALKGADAVVIA---------TEHDEFRSLDP 79
Query: 194 EV---RMRGAQIL 203
E M+ ++
Sbjct: 80 EELKDLMKKPVVV 92
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 28.3 bits (63), Expect = 6.5
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 57 PRTGKAQLNGYVPRRKDYSWNVPKQLFH 84
P G + GYVP+R +++W+ P + H
Sbjct: 44 PGKGWRHI-GYVPQRHEFAWDFPISVAH 70
>gnl|CDD|236178 PRK08187, PRK08187, pyruvate kinase; Validated.
Length = 493
Score = 28.4 bits (64), Expect = 7.4
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 271 DTQLKLLKLCEKSDSALNFIYRYAYVFQIGFKF 303
DT L L L EK + L+F+ R+A + +G+ F
Sbjct: 302 DTALDLPALTEKDRADLDFVARHADL--VGYSF 332
>gnl|CDD|133090 cd06232, M14-like_5, Peptidase M14-like domain; uncharacterized
subfamily. Peptidase M14-like domain of a functionally
uncharacterized subgroup of the M14 family of
metallocarboxypeptidases (MCPs). The M14 family are
zinc-binding carboxypeptidases (CPs) which hydrolyze
single, C-terminal amino acids from polypeptide chains,
and have a recognition site for the free C-terminal
carboxyl group, which is a key determinant of
specificity. Two major subfamilies of the M14 family,
defined based on sequence and structural homology, are
the A/B and N/E subfamilies. Enzymes belonging to the
A/B subfamily are normally synthesized as inactive
precursors containing preceding signal peptide, followed
by an N-terminal pro-region linked to the enzyme; these
proenzymes are called procarboxypeptidases. The A/B
enzymes can be further divided based on their substrate
specificity; Carboxypeptidase A-like (CPA-like) enzymes
favor hydrophobic residues while carboxypeptidase B-like
(CPB-like) enzymes only cleave the basic residues lysine
or arginine. The A forms have slightly different
specificities, with Carboxypeptidase A1 (CPA1)
preferring aliphatic and small aromatic residues, and
CPA2 preferring the bulky aromatic side chains. Enzymes
belonging to the N/E subfamily enzymes are not produced
as inactive precursors and instead rely on their
substrate specificity and subcellular
compartmentalization to prevent inappropriate cleavages.
They contain an extra C-terminal transthyretin-like
domain, thought to be involved in folding or formation
of oligomers. MCPs can also be classified based on
their involvement in specific physiological processes;
the pancreatic MCPs participate only in alimentary
digestion and include carboxypeptidase A and B (A/B
subfamily), while others, namely regulatory MCPs or the
N/E subfamily, are involved in more selective reactions,
mainly in non-digestive tissues and fluids, acting on
blood coagulation/fibrinolysis, inflammation and local
anaphylaxis, pro-hormone and neuropeptide processing,
cellular response and others. Another MCP subfamily,
is that of succinylglutamate desuccinylase
/aspartoacylase, which hydrolyzes N-acetyl-L-aspartate
(NAA), and deficiency in which is the established cause
of Canavan disease. Another subfamily (referred to as
subfamily C) includes an exceptional type of activity in
the MCP family, that of dipeptidyl-peptidase activity of
gamma-glutamyl-(L)-meso-diaminopimelate peptidase I
which is involved in bacterial cell wall metabolism.
Length = 240
Score = 28.1 bits (63), Expect = 7.8
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 64 LNGYVPRRKDYSWNVPKQLFHQLRLYKSDSEQ 95
L+GYVPR + SW +PK F LR + EQ
Sbjct: 152 LSGYVPRGFE-SWTLPKGFFLILRHHAGWDEQ 182
>gnl|CDD|235866 PRK06816, PRK06816, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 378
Score = 28.3 bits (64), Expect = 7.9
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 5/27 (18%)
Query: 303 FCPHHSSHYLGMDVHDC-----AAIPR 324
F PH+SS Y + + IP
Sbjct: 295 FLPHYSSEYFREKIVELLAKAGFMIPE 321
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.433
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,079,451
Number of extensions: 2015247
Number of successful extensions: 1632
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1584
Number of HSP's successfully gapped: 59
Length of query: 413
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 314
Effective length of database: 6,546,556
Effective search space: 2055618584
Effective search space used: 2055618584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)