RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy247
(413 letters)
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 355 bits (914), Expect = e-120
Identities = 119/452 (26%), Positives = 193/452 (42%), Gaps = 94/452 (20%)
Query: 1 MTEKIPYIFRQNTDFFYFTGCLEPDSAVVIHGASDENFKSELFVKRKDAKAELWDGPRTG 60
+ Y +RQN+DF+YFTG EP++ +V+ + D + S LF + +D AE+W G R G
Sbjct: 35 RSADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLG 94
Query: 61 ----KAQLN----GYVPRRKDYSWNVPKQLFHQLRLY-----KSDSEQEMMRETCRIASE 107
+L + + L +Y + ++ + ++
Sbjct: 95 QDAAPEKLGVDRALAFSEINQQ---LYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKG 151
Query: 108 GFKETIGFSKPGRTEHEL----FTKFDYEVR-MRGAQILAYPPVVASGDNANVIHYVHNN 162
+ + + K E+ +R A + H
Sbjct: 152 SRQNLTAPATMIDWRPVVHEMRLFKSPEEIAVLRRA--------------GEITAMAHTR 197
Query: 163 QKCCHGDLLLMDAGFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVH 222
M +PG E+ L + +E GA+ +Y +V SG+N ++HY
Sbjct: 198 ---------AM--EKCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGENGCILHYTE 246
Query: 223 NNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEK 282
N + GDL+L+DAGCE GY DITRT+P++G+FT Q+ +Y+IVL++ L+L +
Sbjct: 247 NECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLY-R 305
Query: 283 SDSALNFIYRYAYVF------QIGF---------------KFCPHHSSHYLGMDVHDCAA 321
+++ + ++G F H SH+LG+DVHD
Sbjct: 306 PGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGV 365
Query: 322 IPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRG 381
+ R+ + PGMV TV PG+YI+ D E ++RG
Sbjct: 366 YGQ------------------------DRSRILEPGMVLTVAPGLYIAPD-AEVPEQYRG 400
Query: 382 MGIRIEDDILIDKSSNVENLSAMCPKNIDEIE 413
+GIRIEDDI+I ++ N ENL+A K +EIE
Sbjct: 401 IGIRIEDDIVITETGN-ENLTASVVKKPEEIE 431
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 332 bits (853), Expect = e-111
Identities = 98/440 (22%), Positives = 169/440 (38%), Gaps = 98/440 (22%)
Query: 5 IPYIFRQNTDFFYFTGCLEPDSAVVIHGASDENFKSELFVKRKDAKAELWDGPRTGK--- 61
Y F N +F+Y TG EP+ ++ + + LF+++ D E W G
Sbjct: 37 AHYKFVPNRNFYYVTGIDEPNVIFMLK-KFGNSVEETLFIEKSDPVMEKWVGKTVSNEEA 95
Query: 62 ------------AQLNGYVPRRKDYSWNVPKQLFHQLRLYKSDSEQEMMRETCRIASEGF 109
+ + + + + + E
Sbjct: 96 EKISGIKKVIYLDSFEKTMS---NIFFTENVKHLYLDLECREWKGTETKTLAFAKHVREQ 152
Query: 110 KETIGFSKPGRTEHEL-FTKFDYEVR-MRGAQILAYPPVVASGDNANVIHYVHNNQKCCH 167
+ EL K D E+ ++ A + + D
Sbjct: 153 YPHVTIGNVYPNICELRVFKTDEEIEIIKEA-------IAVTKD--------------GI 191
Query: 168 GDLLLMDAGFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKC 227
++L +K E+EL +FD+ ++ G + A+ ++ASG NA V+HY N+ +
Sbjct: 192 YNVL----KHAKADMMEYELEAQFDFTLKSSGIKHHAFNTILASGKNATVLHYEDNDAQI 247
Query: 228 CHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSAL 287
+GDL+L+D G + + Y++DI+ T+P +G F+ QK +Y IVL+ + ++ K
Sbjct: 248 QNGDLVLLDLGAQKDYYNADISYTFPANGTFSSRQKQIYNIVLNALKETTEII-KPGLKF 306
Query: 288 NFIYRYAYVF------QIGF--------KFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVV 333
+ +A +G K+ H SH+LG+D HD
Sbjct: 307 AALNEHAKKVLAEGCKAVGLIQEDEELSKYYYHGVSHFLGLDTHDVGTY----------- 355
Query: 334 FTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILID 393
+ + GMV T+EPG+YI ++ +GIRIEDDIL+
Sbjct: 356 ----------------KDRVLEEGMVITIEPGLYIEEE---------SIGIRIEDDILVT 390
Query: 394 KSSNVENLSAMCPKNIDEIE 413
K + ENLS + ++EIE
Sbjct: 391 KDGH-ENLSKDIIREVEEIE 409
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 284 bits (728), Expect = 1e-91
Identities = 118/467 (25%), Positives = 179/467 (38%), Gaps = 109/467 (23%)
Query: 5 IPYIFRQNTDFFYFTGCLEPDSAVVIHGASDENFKSELFVKRKDAKAELWDGPRTGK--- 61
+FRQ + F + G EP VI + KS LFV R A W G K
Sbjct: 62 TGVLFRQESFFHWAFGVTEPGCYGVIDVDTG---KSTLFVPRLPASHATWMGKIHSKEHF 118
Query: 62 ------------AQLNGYVPRRKDYSWNVPKQLFHQLRLYKSDSEQEMMRETCRIASEGF 109
++ + +K + LR +DS + RE F
Sbjct: 119 KEKYAVDDVQYVDEIASVLTSQK-------PSVLLTLRGVNTDSGS-VCREASFDGISKF 170
Query: 110 KETIGFSKPGRTEHELFTKFDYEVR-MRGAQILAYPPVVASGDNANVIHYVHNNQKCCHG 168
+ P E +F K D E+ +R + H
Sbjct: 171 EVNNTILHPEIVECRVF-KTDMELEVLRYT--------------NKISSEAHRE------ 209
Query: 169 DLLLMDAGFSKPGRTEHELFTKFDYEVRMR-GAQILAYPPVVASGDNANVIHYVH----N 223
+M A K G E+EL + F++ R G + +Y + SG+N+ V+HY H N
Sbjct: 210 ---VMKA--VKVGMKEYELESLFEHYCYSRGGMRHSSYTCICGSGENSAVLHYGHAGAPN 264
Query: 224 NQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKS 283
++ +GD+ L D G E + SDIT ++P +G+FT QK +YE VL + ++ K
Sbjct: 265 DRTIQNGDMCLFDMGGEYYCFASDITCSFPANGKFTADQKAVYEAVLRSSRAVMGAM-KP 323
Query: 284 DSALNFIYRYA---------------------YVFQIGFKFCPHHSSHYLGMDVHDCAAI 322
++R A +G F PH H+LG+DVHD
Sbjct: 324 GVWWPDMHRLADRIHLEELAHMGILSGSVDAMVQAHLGAVFMPHGLGHFLGIDVHDVGGY 383
Query: 323 PRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKD----------- 371
P + EPG+ ++ + PGMV TVEPG+Y
Sbjct: 384 PEGVERID------EPGL-----RSLRTARHLQPGMVLTVEPGIYFIDHLLDEALADPAR 432
Query: 372 ----CKETRPEFRGM-GIRIEDDILIDKSSNVENLSAMCPKNIDEIE 413
+E FRG G+RIE+D+++ S E L+ P+ ++EIE
Sbjct: 433 ASFFNREVLQRFRGFGGVRIEEDVVVTDSGI-ELLTC-VPRTVEEIE 477
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 244 bits (624), Expect = 1e-76
Identities = 92/451 (20%), Positives = 157/451 (34%), Gaps = 92/451 (20%)
Query: 6 PYIFRQNTDF-FYFTGCLEPDSAVVIHGASDENFKSELFVKRKDAKAELWDGPRTG--KA 62
Y F+ N F + P+ +V++G + +F + +D W
Sbjct: 47 HYPFKVNPQFKAWVPVIDNPNCWLVVNGVDK---PTLIFYRPED----FWHKVPPEPNDF 99
Query: 63 QLNGYVPRRKDYSWNVPKQLFHQLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTE 122
+ + + + V K L + + + E +A + + +
Sbjct: 100 WTDSFDIKLLQQADAVEKFLPYDKSRFA------YVGEYIEVAKALGFDNVNPDRVLHYL 153
Query: 123 HEL-FTKFDYEVR-MRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGFSKP 180
H K DYE+ MR A LA G A +
Sbjct: 154 HYQRAYKTDYELDCMREANKLAV-----------------------AGHKAAEQA--FRE 188
Query: 181 GRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCH-GDLLLMDAGC 239
G++E ++ + R +G + Y +VA ++A+++HY+ + L+DAG
Sbjct: 189 GKSEFDINLAYAAASR-QGDNDVPYTSIVALNEHASILHYMQCDTVAPKESRSFLIDAGA 247
Query: 240 ELNGYDSDITRTWPISGQFTDHQ-KVLYEIVLDTQLKLLKLCEKSDSALNFIYRYAYVF- 297
+GY +DITRT+ G + L + V L L+ K A I+ A+
Sbjct: 248 NYHGYAADITRTYAQEGVHNSAMFRDLIQAVDKVTLTLVDSL-KPGVAYTDIHLLAHDGI 306
Query: 298 --------------------QIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVE 337
I F PH H+LG+ VHD + T +
Sbjct: 307 AQILHDTGMVNLTPPEIVEMGITRTFFPHGIGHFLGLQVHDVGGLV------NDDRGTPK 360
Query: 338 PGMDVHDCAAIPRTIPVAPGMVFTVEPGVYI-------------SKDCKETRPE-FRGM- 382
P D H R + VFT+EPG+Y SK + ++
Sbjct: 361 PAPDDHPFLRCTRMV--EARQVFTIEPGLYFIDSLLRDLKATPASKYINWDTIDAYKPFG 418
Query: 383 GIRIEDDILIDKSSNVENLSAMCPKNIDEIE 413
GIRIED+I++ + N EN++ N++
Sbjct: 419 GIRIEDNIIVHRDKN-ENMTRDLDLNLEHHH 448
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 234 bits (598), Expect = 3e-72
Identities = 86/456 (18%), Positives = 136/456 (29%), Gaps = 101/456 (22%)
Query: 5 IPYIFRQNTDF-FYFTGCLEPDSAVVIHGASDENFKSELFVKRKDAKAELWDGPRTGKAQ 63
+ Y F+ N F + P +V +G +F + D W
Sbjct: 46 MYYPFKVNPQFKAWLPVIDNPHCWIVANGTDK---PKLIFYRPVD----FWHKVPDE--- 95
Query: 64 LNGYVPRRKD----YSWN-VPKQLFHQLRLYKSDSEQEMMRETCRIASEGFKETIGFSKP 118
N Y D + V K L + + + E +A E +
Sbjct: 96 PNEYWADYFDIELLVKPDQVEKLLPYDKARFA------YIGEYLEVAQALGFELMNPEPV 149
Query: 119 GRTEHEL-FTKFDYEVR-MRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 176
H K YE+ MR A +A H DA
Sbjct: 150 MNFYHYHRAYKTQYELACMREANKIAVQ---------------------GH--KAARDA- 185
Query: 177 FSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCH-GDLLLM 235
G++E E+ + + Y +VA +N ++HY H ++ L+
Sbjct: 186 -FFQGKSEFEIQQAYLLATQ-HSENDNPYGNIVALNENCAILHYTHFDRVAPATHRSFLI 243
Query: 236 DAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSALNFIYRYAY 295
DAG NGY +DITRT+ +G+ L + Q+ L+ ++ +
Sbjct: 244 DAGANFNGYAADITRTYDFTGEGE--FAELVATMKQHQIALMNQL-APGKLYGELHLDCH 300
Query: 296 VF---------------------QIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVF 334
I F PH H++G+ VHD G
Sbjct: 301 QRVAQTLSDFNIVDLSADEIVAKGITSTFFPHGLGHHIGLQVHDVGGFM---ADEQGAHQ 357
Query: 335 TVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPE---------------F 379
G C T + VFT+EPG+Y
Sbjct: 358 EPPEGHPFLRC-----TRKIEANQVFTIEPGLYFIDSLLGDLAATDNNQHINWDKVAELK 412
Query: 380 RGMGIRIEDDILIDKSSNVENLSAMCPK--NIDEIE 413
GIRIED+I++ + S EN++ +
Sbjct: 413 PFGGIRIEDNIIVHEDSL-ENMTRELRLRLTTHSLR 447
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 166 bits (422), Expect = 4e-47
Identities = 41/339 (12%), Positives = 87/339 (25%), Gaps = 69/339 (20%)
Query: 82 LFHQLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQIL 141
++ K +EQ + + + + + E T ++
Sbjct: 170 GLSKVWEVKDVNEQAFLSVSSKGSDKFMDLLSNEMVRAVDEELKITNAKLSDKIENK--- 226
Query: 142 AYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGFSKPGRTEHELFTKFDYEVRMRGAQ 201
+ D F K + +Y+
Sbjct: 227 ------------------------------IDDVKFLKQLSPDLSALCPPNYKFNF-DLL 255
Query: 202 ILAYPPVVASGDNANV-IHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTD 260
Y P++ SG ++ + N + +L G N Y S+ITRT+ I ++
Sbjct: 256 DWTYSPIIQSGKKFDLRVSARSTNDQLYGNGCILASCGIRYNNYCSNITRTFLIDP--SE 313
Query: 261 HQKVLYEIVLDTQLKLLKLCEKSDSALNFIYRYA--YVFQIGF---KFCPHHSSHYLGMD 315
Y+ +L Q +++ K +Y Y+ + + +G++
Sbjct: 314 EMANNYDFLLTLQKEIVTNILKPGRTPKEVYESVIEYIEKTKPELVPNFTKNIGSLIGLE 373
Query: 316 VHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKET 375
D + + G F + G KD +
Sbjct: 374 FRDS---NFILN-------------------VKNDYRKIQRGDCFNISFGFNNLKDSQSA 411
Query: 376 RPEFRGMGIRIEDDILIDKSSN-VENLSAMCPKNIDEIE 413
+++ D + I K +I
Sbjct: 412 NN----YALQLADTVQIPLDETEPPRFLTNYTKAKSQIS 446
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 148 bits (374), Expect = 3e-40
Identities = 42/337 (12%), Positives = 97/337 (28%), Gaps = 73/337 (21%)
Query: 82 LFHQLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQIL 141
+ K + E ++ R++ + EL T D ++ ++
Sbjct: 170 GLAKCLAIKDEQELANIKGASRVSVAVMSKYF--------VDELSTYIDQGKKITHSKF- 220
Query: 142 AYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGFSKPGRTEHELFTKFDYEVRMRGAQ 201
++ + L+ + F + +
Sbjct: 221 -----------SDQMES------------LIDNEAFFQTKSLKLGDIDL--------DQL 249
Query: 202 ILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDH 261
Y P++ SG + ++ + + HGD++L G Y S++ RT+
Sbjct: 250 EWCYTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFDP--DSE 307
Query: 262 QKVLYEIVLDTQLKLLKLCEKSDSALNFIYRYA--YVFQIGF---KFCPHHSSHYLGMDV 316
Q+ Y ++ Q KL + C + + + IY + + +G++
Sbjct: 308 QQKNYSFLVALQKKLFEYC-RDGAVIGDIYTKILGLIRAKRPDLEPNFVRNLGAGIGIEF 366
Query: 317 HDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETR 376
+ + +V + GM + G +
Sbjct: 367 RE----------SSLLVNAKN-------------PRVLQAGMTLNLSIGFGNLINPHPKN 403
Query: 377 PEFRGMGIRIEDDILIDKSSNVENLSAMCPKNIDEIE 413
+ + + + D I I +S + PK +I
Sbjct: 404 SQSKEYALLLIDTIQITRSDP-IVFTD-SPKAQGDIS 438
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 138 bits (350), Expect = 2e-37
Identities = 67/241 (27%), Positives = 113/241 (46%), Gaps = 49/241 (20%)
Query: 179 KPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 238
+ G TE E+ +Y +R GA+ +A+ +VASG + + H +++ GD++++D G
Sbjct: 161 RAGMTEKEIAALLEYTMRKEGAEGVAFDTIVASGCRSALPHGKASDKVVERGDVIVIDFG 220
Query: 239 CELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKL------CEKSDS-ALNFIY 291
Y +DITR I G+ +D K ++ IVL+ Q + LK+ + DS A FI
Sbjct: 221 ATYENYCADITRVVSI-GEPSDEVKEVHSIVLEAQERALKIAKAGVTGKLLDSVAREFIR 279
Query: 292 RYAYVFQIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRT 351
Y G F H H +G++VH+ P + F +
Sbjct: 280 EKGY----GEFF-GHSLGHGIGLEVHE----------GPAISFRND-------------- 310
Query: 352 IPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILIDKSSNVENLSAMCPKNIDE 411
P+ +VFTVEPG+Y+ GIRIE+D+++ + E L+ + P++I
Sbjct: 311 SPLPENVVFTVEPGIYL--------EGK--FGIRIEEDVVLKEQG-CEILTTL-PRSIFV 358
Query: 412 I 412
+
Sbjct: 359 V 359
Score = 89.6 bits (223), Expect = 5e-20
Identities = 27/95 (28%), Positives = 52/95 (54%)
Query: 82 LFHQLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQIL 141
Q+R+ K + E E +++ I+ F ET+ + G TE E+ +Y +R GA+ +
Sbjct: 126 EVKQMRMVKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALLEYTMRKEGAEGV 185
Query: 142 AYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 176
A+ +VASG + + H +++ GD++++D G
Sbjct: 186 AFDTIVASGCRSALPHGKASDKVVERGDVIVIDFG 220
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 137 bits (348), Expect = 3e-37
Identities = 69/241 (28%), Positives = 115/241 (47%), Gaps = 49/241 (20%)
Query: 179 KPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 238
+PG +E E+ + ++ +R +GA ++ +VASG + + H V + + GD + +D G
Sbjct: 158 RPGVSEIEVSNELEFFMRKQGATSSSFDIIVASGLRSALPHGVASEKVIETGDFVTLDFG 217
Query: 239 CELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKL------CEKSDS-ALNFIY 291
GY SDITRT + G+ +D K +Y IVL+ QL+ + ++D+ ++I
Sbjct: 218 AYYKGYCSDITRTIAV-GEPSDKLKEIYNIVLEAQLRGVNGIKAGLTGREADALTRDYIT 276
Query: 292 RYAYVFQIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRT 351
Y G F H + H +G+++H+ APG+ F +
Sbjct: 277 EKGY----GEYF-GHSTGHGIGLEIHE----------APGLAFRSD-------------- 307
Query: 352 IPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILIDKSSNVENLSAMCPKNIDE 411
+ PGM TVEPG+YI P G+RIEDDI++ N E ++ PK +
Sbjct: 308 TVLEPGMAVTVEPGIYI--------PGI--GGVRIEDDIIVTSEGN-EVITKS-PKELII 355
Query: 412 I 412
+
Sbjct: 356 L 356
Score = 90.3 bits (225), Expect = 3e-20
Identities = 30/95 (31%), Positives = 56/95 (58%)
Query: 82 LFHQLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQIL 141
L +LRL K+DSE ++++E +IA F+ + F +PG +E E+ + ++ +R +GA
Sbjct: 123 LVEKLRLIKTDSEIKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGATSS 182
Query: 142 AYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 176
++ +VASG + + H V + + GD + +D G
Sbjct: 183 SFDIIVASGLRSALPHGVASEKVIETGDFVTLDFG 217
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 135 bits (343), Expect = 1e-36
Identities = 71/221 (32%), Positives = 107/221 (48%), Gaps = 47/221 (21%)
Query: 179 KPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 238
G+ E E+ K +Y ++M GA+ A+ ++ASG + + H V ++++ GDL+++D G
Sbjct: 155 TEGKKEREVAAKVEYLMKMNGAEKPAFDTIIASGYRSALPHGVASDKRIERGDLVVIDLG 214
Query: 239 CELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKL------CEKSDS-ALNFIY 291
Y+SDITRT + G + QK +YEIVL+ Q K ++ ++ DS A N I
Sbjct: 215 ALYQHYNSDITRTIVV-GSPNEKQKEIYEIVLEAQKKAVESAKPGITAKELDSIARNIIA 273
Query: 292 RYAYVFQIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRT 351
Y Y G F H H +G++VH+ P V E
Sbjct: 274 EYGY----GEYF-NHSLGHGVGLEVHE----------WPRVSQYDE-------------- 304
Query: 352 IPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILI 392
+ GMV T+EPG+YI P+ G+RIED ILI
Sbjct: 305 TVLREGMVITIEPGIYI--------PKI--GGVRIEDTILI 335
Score = 87.3 bits (217), Expect = 4e-19
Identities = 27/92 (29%), Positives = 53/92 (57%)
Query: 85 QLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQILAYP 144
+R+ KS+ E +++ + C IA + I G+ E E+ K +Y ++M GA+ A+
Sbjct: 123 DMRIIKSEKEIKIIEKACEIADKAVMAAIEEITEGKKEREVAAKVEYLMKMNGAEKPAFD 182
Query: 145 PVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 176
++ASG + + H V ++++ GDL+++D G
Sbjct: 183 TIIASGYRSALPHGVASDKRIERGDLVVIDLG 214
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 127 bits (322), Expect = 1e-33
Identities = 67/221 (30%), Positives = 99/221 (44%), Gaps = 48/221 (21%)
Query: 179 KPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 238
G E EL K + +R + +A+ P+VASG+NA H+ +K GD++++D G
Sbjct: 159 LIGMKERELALKIELLIR-ELSDGIAFEPIVASGENAANPHHEPGERKIRKGDIIILDYG 217
Query: 239 CELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLK------LCEKSDS-ALNFIY 291
GY SDITRT + G+ + +YE+V D Q K + DS A I
Sbjct: 218 ARWKGYCSDITRTIGL-GELDERLVKIYEVVKDAQESAFKAVREGIKAKDVDSRAREVIS 276
Query: 292 RYAYVFQIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRT 351
+ Y G F H + H LG+DVH+ P + E
Sbjct: 277 KAGY----GEYF-IHRTGHGLGLDVHE----------EPYIGPDGE-------------- 307
Query: 352 IPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILI 392
+ + GM FT+EPG+Y+ P G+RIEDDI++
Sbjct: 308 VILKNGMTFTIEPGIYV--------PGL--GGVRIEDDIVV 338
Score = 80.4 bits (199), Expect = 6e-17
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 85 QLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQILAYP 144
+LR+ K E +MM RIA + F+E + + G E EL K + +R + +A+
Sbjct: 127 ELRMIKDKEEVKMMEHASRIADKVFEEILTWDLIGMKERELALKIELLIR-ELSDGIAFE 185
Query: 145 PVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 176
P+VASG+NA H+ +K GD++++D G
Sbjct: 186 PIVASGENAANPHHEPGERKIRKGDIIILDYG 217
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 124 bits (314), Expect = 3e-32
Identities = 52/243 (21%), Positives = 96/243 (39%), Gaps = 51/243 (20%)
Query: 179 KPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 238
PGRTE ++ + G +A+ +V SG + H+ ++++K GD++++D G
Sbjct: 178 VPGRTEAQVAADIAEAIVAEGHSAVAFV-IVGSGPHGADPHHGYSDRKLQVGDIVVVDIG 236
Query: 239 CELN-GYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLK------LCEKSDS-ALNFI 290
GY SD TRT+ I G + Y + Q + + D+ A + +
Sbjct: 237 GTYEPGYYSDSTRTYSI-GDPSPDVAQQYSALQRAQRAAVDAVRPGVTAAQVDAAARDVL 295
Query: 291 YRYAYVFQIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPR 350
F H + H +G+ VH+ P +V
Sbjct: 296 ADAGL----AEYF-VHRTGHGIGLCVHE----------EPYIVAG--------------N 326
Query: 351 TIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILIDKSSNVENLSAMCPKNID 410
+P+ GM F++EPG+Y P G RIED +++ + + +++ P +
Sbjct: 327 ELPLVAGMAFSIEPGIYF--------PGR--WGARIEDIVVVTE-NGALSVNNR-PHELM 374
Query: 411 EIE 413
+
Sbjct: 375 VVP 377
Score = 77.7 bits (192), Expect = 6e-16
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 85 QLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQILAYP 144
QLR+ K +E + + + F PGRTE ++ + G +A+
Sbjct: 146 QLRMVKEAAEVDALAKAGAAIDRVHARVPAFLVPGRTEAQVAADIAEAIVAEGHSAVAF- 204
Query: 145 PVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 176
+V SG + H+ ++++K GD++++D G
Sbjct: 205 VIVGSGPHGADPHHGYSDRKLQVGDIVVVDIG 236
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 122 bits (308), Expect = 3e-31
Identities = 42/247 (17%), Positives = 85/247 (34%), Gaps = 46/247 (18%)
Query: 179 KPGRTEHELFTKFDYEVRMRGAQ------ILAYPPVVASGDNANVIHYVHNNQKCCHGDL 232
E+E+ + A ++ SG N + H +K GD+
Sbjct: 185 GDQVPEYEVALHATQAMVRAIADTFEDVELMDTWTWFQSGINTDGAHNPVTTRKVNKGDI 244
Query: 233 LLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKL------CEKSDSA 286
L ++ + GY + + RT + +D L+++ ++ LKL C
Sbjct: 245 LSLNCFPMIAGYYTALERTLFL-DHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDIARE 303
Query: 287 LN-FIYRYAYVFQIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDC 345
LN ++ + ++ H G H R + + +D
Sbjct: 304 LNEIFLKHDVL-----QYRTFGYGHSFGTLSHY---YGREAGL------ELREDID---- 345
Query: 346 AAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILIDKSSNVENLSAMC 405
+ PGMV ++EP + + E P G R D ++++++ EN++
Sbjct: 346 ------TVLEPGMVVSMEPMIMLP----EGLPGA--GGYREHDILIVNENG-AENITKF- 391
Query: 406 PKNIDEI 412
P ++
Sbjct: 392 PYGPEKN 398
Score = 76.2 bits (188), Expect = 2e-15
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 6/98 (6%)
Query: 85 QLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQ----- 139
++R+ KS E M+R RIA G + E+E+ + A
Sbjct: 153 RMRMIKSAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDV 212
Query: 140 -ILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 176
++ SG N + H +K GD+L ++
Sbjct: 213 ELMDTWTWFQSGINTDGAHNPVTTRKVNKGDILSLNCF 250
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 120 bits (302), Expect = 2e-30
Identities = 46/258 (17%), Positives = 88/258 (34%), Gaps = 52/258 (20%)
Query: 174 DAGFS------KPGRTEHELFTKFDYEVRMRGAQ------ILAYPPVVASGDNANVIHYV 221
D G + G E+E+ + A+ ++ SG N + H
Sbjct: 174 DIGGAATAAAISAGVPEYEVAIATTBAMVRZIARBFPYVELMDTWIWFQSGINTDGAHNP 233
Query: 222 HNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKL-- 279
B+ GD+L ++ + GY + + RT + Z D ++Z + L+L
Sbjct: 234 VTBRVVZRGDILSLNCFPMIFGYYTALERTLFL-ZZVBDASLZIWZKNTAVHRRGLZLIK 292
Query: 280 ----CEKSDSALN-FIYRYAYVFQIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVF 334
C+ S LN + + ++ H G+ H R V
Sbjct: 293 PGARCKDIASELNBMYRZWDLL-----RYRTFGYGHSFGVLBHY---YGREAGVE----- 339
Query: 335 TVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILIDK 394
+ ++ + PGMV ++EP V E P G R D ++I K
Sbjct: 340 -LREDIZT----------VLEPGMVVSMEPMVMBP----EGEPGA--GGYREHDILVI-K 381
Query: 395 SSNVENLSAMCPKNIDEI 412
+B EN++ P +
Sbjct: 382 ENBTENITGF-PFGPEHN 398
Score = 78.5 bits (194), Expect = 5e-16
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
Query: 81 QLFHQLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQ- 139
Z R+ KS EZ+++RZ RI+ G T G E+E+ + A+
Sbjct: 149 ZPVMWZRVIKSSEEZBLIRZGARISDIGGAATAAAISAGVPEYEVAIATTBAMVRZIARB 208
Query: 140 -----ILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 176
++ SG N + H B+ GD+L ++
Sbjct: 209 FPYVELMDTWIWFQSGINTDGAHNPVTBRVVZRGDILSLNCF 250
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 93.5 bits (232), Expect = 6e-21
Identities = 43/238 (18%), Positives = 82/238 (34%), Gaps = 47/238 (19%)
Query: 175 AGFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLL 234
+ E++++ E RG + + ++ASG +N + C +++
Sbjct: 258 SKVGDGVTCENDIWAILHSENVRRGGEWIE-TRLLASGPRSNPWFQECGPRVCQRNEIIS 316
Query: 235 MDAGCEL-NGYDSDITRTWPISGQFTDHQKVLYEIVL-----DTQLKLLK----LCEKSD 284
D G +DI+R+W I G ++Y + T +++LK + E S
Sbjct: 317 FDTDLVGAYGICTDISRSWWI-GDQKPRADMIYAMQHGVEHIRTNMEMLKPGVMIPELSA 375
Query: 285 SALNFIYRYAYVFQIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHD 344
+ ++ H +G+ + P V + +D
Sbjct: 376 NTHVLDAKFQKQK-------YGCLMHGVGL-CDE----------WPLVAYPDHAVAGAYD 417
Query: 345 CAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILIDKSSNVENLS 402
P+ PGM VE + E I++ED +LI + ENL+
Sbjct: 418 -------YPLEPGMTLCVEALISE---------EGGDFSIKLEDQVLITE-DGYENLT 458
Score = 58.5 bits (141), Expect = 2e-09
Identities = 16/101 (15%), Positives = 36/101 (35%), Gaps = 6/101 (5%)
Query: 81 QLFHQLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPG-----RTEHELFTKFDYEVRM 135
++ + R K E MR ++ F++ E++++ E
Sbjct: 221 EVTEKARSVKGPDEIRAMRCASHACEVAVRKMEDFARSKVGDGVTCENDIWAILHSENVR 280
Query: 136 RGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 176
RG + + ++ASG +N + C +++ D
Sbjct: 281 RGGEWIE-TRLLASGPRSNPWFQECGPRVCQRNEIISFDTD 320
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 62.7 bits (153), Expect = 9e-11
Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 63/233 (27%)
Query: 203 LAYPPVVASGDNANVIHYVHNNQKC---CHGDLLLMDAGCE-LNGYDSDITRTWPISGQF 258
L++P + ++G +IHY + ++ L+D+G + +G +D+TRT
Sbjct: 379 LSFPTISSTGPTGAIIHYAPVPETNRTLSLDEVYLIDSGAQYKDG-TTDVTRTMHF-ETP 436
Query: 259 TDHQKVLYEIVLDTQLKLLKLCEKSD---SALNFIYRYAYVFQIGFKFCPH---HS-SHY 311
T ++K + VL + + + L+ R + ++ G + H H +
Sbjct: 437 TAYEKECFTYVLKGHIAVSAAVFPTGTKGHLLDSFAR-SALWDSGLDY-LHGTGHGVGSF 494
Query: 312 LGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKD 371
L VH+ P I P+ GM+ T EPG Y
Sbjct: 495 LN--VHEG---PCGISYKTF------------------SDEPLEAGMIVTDEPGYYEDG- 530
Query: 372 CKETRPEFRGMGIRIEDDILIDKSSNV-----------ENLSAMCP---KNID 410
F GIRIE+ +L+ E L+ + P K ID
Sbjct: 531 ------AF---GIRIENVVLVVPVKTKYNFNNRGSLTLEPLT-LVPIQTKMID 573
Score = 34.2 bits (79), Expect = 0.087
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 18/67 (26%)
Query: 141 LAYPPVVASGDNANVIHYVHNNQKC---CHGDLLLMDAG---------------FSKPGR 182
L++P + ++G +IHY + ++ L+D+G F P
Sbjct: 379 LSFPTISSTGPTGAIIHYAPVPETNRTLSLDEVYLIDSGAQYKDGTTDVTRTMHFETPTA 438
Query: 183 TEHELFT 189
E E FT
Sbjct: 439 YEKECFT 445
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 1e-06
Identities = 75/473 (15%), Positives = 129/473 (27%), Gaps = 170/473 (35%)
Query: 38 FKSELFVKRKDAKAE---LWDGPRTGKAQL--------NGYVPRRKDYSWNVPKQLFHQL 86
+ + KR K L+ G AQL N DY F +L
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT-----DDY--------FEEL 173
Query: 87 R-LYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTK-FDYEVRMRGAQ----- 139
R LY + ++ + + ++E E + ++FT+ + +
Sbjct: 174 RDLY--QTYHVLVGDLIKFSAETLSE---LIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 140 -ILAYPPVVASGDNANVI------HY--VHNNQKCCHGDLLLMDAGFSKPGR-------- 182
L P+ S +I HY G+L G + +
Sbjct: 229 DYLLSIPI--SC---PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 183 ----TEHELFTKFDYEVRM------RGAQILAYPPVVASGDNANVIHYVHNNQK------ 226
+ F + + R + AYP S + + + NN+
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYE--AYPNT--SLPPSILEDSLENNEGVPSPML 339
Query: 227 CCHG------DLLLMDAGCEL-----------NGYDSDITRTWPISGQFTDHQKVLYEIV 269
+ L NG + + +SG + LY
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV-----VSG----PPQSLY--G 388
Query: 270 LDTQLKLLKLCEKSDSA--------LNFIYRYAYVFQIGFKFCPHHSSHYLG----MDVH 317
L+ L+ K D + L F R+ V P H SH L +
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA------SPFH-SHLLVPASDLINK 441
Query: 318 DCAAIPRTIPVA----PGVVFTVEPGMDVHDCAA-IPRTI-------PV----------- 354
D + P V+ G D+ + I I PV
Sbjct: 442 DLVKNNVSFNAKDIQIP--VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT 499
Query: 355 -----APGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDIL---IDKSSNVE 399
PG + + +KD G G+R+ I+ +D + + +
Sbjct: 500 HILDFGPGGASGLGVLTHRNKD---------GTGVRV---IVAGTLDINPDDD 540
Score = 38.5 bits (89), Expect = 0.004
Identities = 57/410 (13%), Positives = 94/410 (22%), Gaps = 168/410 (40%)
Query: 74 YSWNVPKQLF---HQLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEH------- 123
+ VP F QL+ E F + + P TE
Sbjct: 18 HVLLVPTASFFIASQLQ-------------------EQFNKIL----PEPTEGFAADDEP 54
Query: 124 ----ELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGFSK 179
EL KF L Y V V ++ +L +
Sbjct: 55 TTPAELVGKF-----------LGY-----------VSSLVEPSKVGQFDQVLNL------ 86
Query: 180 PGRTEHELFTKFDYEVRMRGAQILAYPPVVAS--GDNANVIHYVHNNQKC---------- 227
T+F+ + G I A + A +N + K
Sbjct: 87 -------CLTEFENCY-LEGNDIHA---LAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 228 ----CHGDLLLMDAGCELNGYDSDITRTWPI-SGQ------FTDHQKVLYEI-------V 269
L + I GQ F + + LY+ +
Sbjct: 136 PFDKKSNSALFRAV-------GEGNAQLVAIFGGQGNTDDYFEELRD-LYQTYHVLVGDL 187
Query: 270 LDTQLKLLKLCEKSDSALNFIYRYAYVFQIGFKFC-------PHHSSHYLGMDVHDCAAI 322
+ + L ++ ++ G YL +I
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQ------GLNILEWLENPSNTPDKDYL-------LSI 234
Query: 323 PRTIP------------------VAPGVVFTVEPGMDVHDCAAIPRTIPVAPG------- 357
P + P PG + + G H + + +A
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH-SQGLVTAVAIAETDSWESFF 293
Query: 358 --MVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILIDKSSNVENL-SAM 404
+ + +I C E P + IL D N E + S M
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPN-----TSLPPSILEDSLENNEGVPSPM 338
Score = 28.9 bits (64), Expect = 4.5
Identities = 58/366 (15%), Positives = 96/366 (26%), Gaps = 159/366 (43%)
Query: 88 LYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVV 147
LYK+ ++ A FK+T GFS
Sbjct: 1635 LYKTSKAA---QDVWNRADNHFKDTYGFS------------------------------- 1660
Query: 148 ASGDNANVIHYVHNNQKCCHGDLLLMDAGFSKPGRTEHELFTKFDYEVRMRGAQILAYPP 207
++ V NN +L + G + G+ E ++ +E + G ++
Sbjct: 1661 -------ILDIVINNPV----NLTIHFGG--EKGKRIRENYSAMIFETIVDG-KLKTEKI 1706
Query: 208 VVASGDNANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLY- 266
+++ + + G L+ T QFT Q L
Sbjct: 1707 FKEINEHSTSYTFRS-------------EKG-LLS-------AT-----QFT--QPALTL 1738
Query: 267 -EIVLDTQLKLLKLCEKSDSALNFIYRYAYVFQIGFKFCPHHSSHYLG-----------M 314
E + LK K + F G HS LG M
Sbjct: 1739 MEKAA---FEDLK--SK------GLIPADATF-AG------HS---LGEYAALASLADVM 1777
Query: 315 DVHDCA------------AIPRT---------IPVAPGVVFTVEPGMDVHDCAAIPRTIP 353
+ A+PR I + PG V + +
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG---RVAASFSQEALQYVVERVG 1834
Query: 354 VAPGMV-----FTVEPGVY-ISKDCKETRPEFRGMGIRIEDDILIDKSSNVENLSAMCPK 407
G + + VE Y + D + +D +NV L+ + +
Sbjct: 1835 KRTGWLVEIVNYNVENQQYVAAGDLRA-----------------LDTVTNV--LNFIKLQ 1875
Query: 408 NIDEIE 413
ID IE
Sbjct: 1876 KIDIIE 1881
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 1e-04
Identities = 46/357 (12%), Positives = 89/357 (24%), Gaps = 92/357 (25%)
Query: 71 RKDYSWNVPKQLFHQLRL-YKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKF 129
R +Y + L ++ + S M R + + F+K + + + K
Sbjct: 88 RINYKF-----LMSPIKTEQRQPSMMTRMYIEQR--DRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 130 D---YEVR---------MRGA--QILA------YPPVVASGDNANVIHYVHNNQKCCHGD 169
E+R + G+ +A Y I +++
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK---IFWLNLKNCNSPET 197
Query: 170 LLLMDAGFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCH 229
+L M +L + D R + S + C
Sbjct: 198 VLEM----------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC- 246
Query: 230 GDLLLMDAGCELNGYDSDITRTWPISGQFTDHQ-KVLYEIVLDTQLKLLKLCEKSDSALN 288
LL++ N ++ F + K+L L T+ K + +D
Sbjct: 247 --LLVLL-----NVQNAKAWNA------F-NLSCKIL----LTTRFKQV-----TDFLSA 283
Query: 289 FIYRYAYVFQIGFKFCPHHS----SHYLGMDVHD-----CAAIPRTIPVAPGVVFTVEPG 339
+ + P YL D PR + +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-AESIRDGLA 342
Query: 340 M----DVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILI 392
+C + I + + +EP E R F + + I
Sbjct: 343 TWDNWKHVNCDKLTTIIESS---LNVLEP--------AEYRKMFDRLSV-FPPSAHI 387
Score = 33.7 bits (76), Expect = 0.14
Identities = 36/246 (14%), Positives = 67/246 (27%), Gaps = 80/246 (32%)
Query: 77 NVPKQLFHQLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTE-HELFTKFDYEVRM 135
++P L + S+ ++ S K+ K ++ + +V++
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ----PKESTISIPSIY--LELKVKL 439
Query: 136 RGAQILAYPPVVASGDNANVI-HYVHNNQKC-CHGDLLL--MDAGF--------SKPGRT 183
L + +++ HY N K DL+ +D F
Sbjct: 440 ENEYAL----------HRSIVDHY--NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 184 EH-ELFTK--FDY---EVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDA 237
E LF D+ E ++R N + N L
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIR-----------HDSTAWNASGSILN---------TLQQ- 526
Query: 238 GCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSALNFIYRYAY-- 295
L Y I P YE +++ L L E++ + Y
Sbjct: 527 ---LKFYKPYICDNDPK-----------YERLVNAILDFLPKIEEN------LICSKYTD 566
Query: 296 VFQIGF 301
+ +I
Sbjct: 567 LLRIAL 572
Score = 32.1 bits (72), Expect = 0.42
Identities = 49/367 (13%), Positives = 108/367 (29%), Gaps = 114/367 (31%)
Query: 22 LEPDSAVVIHG-------------ASDE----NFKSELF---VKRKDAKAELWDGPRTGK 61
L P V+I G ++F +K ++ + + +
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 62 AQLNGYVPRRKDYSWNVP----------KQLFHQLRLYK---------SDSEQ-EMMRET 101
Q++ R D+S N+ ++L + Y+ +++ +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-KPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 102 CRI--------------ASEGFKETIGFSKPGRTEHE---LFTKFDYEVRMRGAQILAYP 144
C+I A+ ++ T E L K+ + R Q L P
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY---LDCR-PQDL--P 319
Query: 145 PVVASG-------------DNANVI-HYVHNNQKCCHGDLL-LMDAGFSKPGRTEH-ELF 188
V + D ++ H N L ++++ + E+ ++F
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD----KLTTIIESSLNVLEPAEYRKMF 375
Query: 189 TKFDYEVRMRGAQILAYPPVV-----ASGDNANVIHYVHNNQKCCHGDLLLMDAG---CE 240
+ V A I P ++ ++V+ V K L+
Sbjct: 376 DRL--SVFPPSAHI---PTILLSLIWFDVIKSDVMVVV---NKLHKYSLVEKQPKESTIS 427
Query: 241 LNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSALNFIYRYAYVFQIG 300
+ ++ + ++ H+ ++ + K + D ++ +Y Y IG
Sbjct: 428 IPSIYLELKV--KLENEYALHRSIV------DHYNIPKTFDSDDLIPPYLDQYFYSH-IG 478
Query: 301 FKFCPHH 307
HH
Sbjct: 479 -----HH 480
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 35.5 bits (82), Expect = 0.029
Identities = 40/288 (13%), Positives = 74/288 (25%), Gaps = 81/288 (28%)
Query: 90 KSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVAS 149
D + IA+ + + S G + L K D + +I +
Sbjct: 20 AEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKIFKKEKEMKK 79
Query: 150 GD----NANVIHYVHNNQKCCHGDLLLMDAGFSKPGRTEHELFTKFDYEVRMRGAQILAY 205
G + +V N CH +
Sbjct: 80 GIAFPTSISV------NNCVCH-------------------------------------F 96
Query: 206 PPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVL 265
P D ++ GDL+ +D G ++G+ +++ T+ +
Sbjct: 97 SP--LKSDQDYILKE---------GDLVKIDLGVHVDGFIANVAHTFVVDVAQGTQVTGR 145
Query: 266 YEIVLDT-------QLKLLKLCEKSDSALNFIYRYAYVFQIGFKFCPHHSSHYLGMDVHD 318
V+ L+L+K ++ + A+ F SH L V D
Sbjct: 146 KADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSF--NCTPIEGMLSHQLKQHVID 203
Query: 319 CAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGV 366
+TI P + V+ V+ V
Sbjct: 204 G---EKTIIQNPTDQQKKDH-----------EKAEFEVHEVYAVDVLV 237
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 35.2 bits (82), Expect = 0.029
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 90 KSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHEL 125
K+ SE E M++ + + +E PG+T ++
Sbjct: 17 KTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDV 52
Score = 29.4 bits (67), Expect = 1.9
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 12/56 (21%)
Query: 224 NQKCCHG-----------DLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEI 268
N++ HG D++ +D G G D T+ + G+ + K L +
Sbjct: 84 NEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIV-GETDERGKELVRV 138
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 34.9 bits (81), Expect = 0.037
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 89 YKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHEL 125
++ E + M I +K G + EL
Sbjct: 34 QRTPGELDAMAAAGSIVGAALVAVRDAAKAGVSTLEL 70
Score = 28.3 bits (64), Expect = 4.6
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 230 GDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEI 268
GDL+ +D G L+G+ D T+ + G + L E
Sbjct: 119 GDLVSIDCGAILDGWHGDSAWTFAV-GTVIPSDEALSEA 156
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter
feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Length = 264
Score = 34.0 bits (79), Expect = 0.055
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 90 KSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHEL 125
KS E EMM E+ + ++ + F KPG T ++
Sbjct: 5 KSPREIEMMDESGELLADVHRHLRTFIKPGITSWDI 40
Score = 29.0 bits (66), Expect = 2.4
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 214 NANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEI 268
N + H + GDL+ +D +L G SD ++ + G+ T L E+
Sbjct: 72 NDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVV-GESTPEIDRLMEV 125
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor,
antibacterial, hydrolase; HET: U12; 1.00A {Escherichia
coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A*
2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A*
2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A*
3mat_A* 1yvm_A* 2mat_A ...
Length = 263
Score = 33.7 bits (78), Expect = 0.074
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 90 KSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTK-FDYEVRMRGA 138
K+ + E MR R+A+E + + KPG + EL DY V + A
Sbjct: 5 KTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHA 54
Score = 27.9 bits (63), Expect = 5.2
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 356 PGMVFTVEP 364
PGM FT+EP
Sbjct: 196 PGMTFTIEP 204
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex;
HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB:
3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A*
1y1n_A 1yj3_A
Length = 285
Score = 33.7 bits (78), Expect = 0.081
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 68 VP---RRKDYSWNVPKQLFHQLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHE 124
VP R +Y Q + + ++ E MR RIA+ E PG T E
Sbjct: 18 VPNWIARPEYVGKPAAQEGSEPWV-QTPEVIEKMRVAGRIAAGALAEAGKAVAPGVTTDE 76
Query: 125 L 125
L
Sbjct: 77 L 77
Score = 27.5 bits (62), Expect = 9.1
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 356 PGMVFTVEP 364
PGM FT+EP
Sbjct: 231 PGMTFTIEP 239
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 32.6 bits (75), Expect = 0.17
Identities = 36/174 (20%), Positives = 66/174 (37%), Gaps = 24/174 (13%)
Query: 179 KPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHY---VHNNQKCCHGDLLLM 235
+PG EL + + G + A+P ++ N HY + GD L +
Sbjct: 25 RPGMLLLELAESIEKMIMELGGKP-AFPVNLSI--NEIAAHYTPYKGDTTVLKEGDYLKI 81
Query: 236 DAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLK----LCEKSDSALNFIY 291
D G ++G+ +D T + + + + E L+ + + + + E + N I
Sbjct: 82 DVGVHIDGFIADTAVTVRVGMEEDELMEAAKE-ALNAAISVARAGVEIKELGKAIENEIR 140
Query: 292 RYAYVFQIGFKFCPHHSSHYLG-MDVHDCAAIP------RTIPVAPGVVFTVEP 338
+ GFK + S H + +H +IP + G VF +EP
Sbjct: 141 KR------GFKPIVNLSGHKIERYKLHAGISIPNIYRPHDNYVLKEGDVFAIEP 188
Score = 31.1 bits (71), Expect = 0.65
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 13/75 (17%)
Query: 94 EQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNA 153
+ E + + IA + ++ I ++PG EL + + G + A+P N
Sbjct: 2 DTEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKP-AFPV------NL 54
Query: 154 NVIHYVHNNQKCCHG 168
++ N+ H
Sbjct: 55 SI------NEIAAHY 63
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
1qxw_A* 1qxz_A*
Length = 252
Score = 32.1 bits (74), Expect = 0.22
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 90 KSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHEL 125
K++ E + ++E I ++ +KPG T EL
Sbjct: 4 KTEEELQALKEIGYICAKVRNTMQAATKPGITTKEL 39
Score = 27.5 bits (62), Expect = 8.2
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 356 PGMVFTVEP 364
GMV +EP
Sbjct: 195 EGMVLAIEP 203
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 32.6 bits (74), Expect = 0.26
Identities = 36/203 (17%), Positives = 66/203 (32%), Gaps = 38/203 (18%)
Query: 179 KPGRTEHELFTKFDYEVRMRGAQ--ILAYP--PVVASGDNANVIHY---VHNNQKCCHGD 231
KPG T E+ K + R + + A P S +N HY + + D
Sbjct: 188 KPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNC-AAHYTPNAGDTTVLQYDD 246
Query: 232 LLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSALNFIY 291
+ +D G ++G D T + ++ K + + +T +K + + I
Sbjct: 247 ICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKD-ATNTGIKCAGIDVRLCDVGEAIQ 305
Query: 292 RY--AYVFQI-----GFKFCPHHSSHYLGMDVHDCAAIPRTIP-VAPGVVFTVEPGMDVH 343
+Y +I K + + H +G +T+P V G +E
Sbjct: 306 EVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHA---GKTVPIVKGGEATRME------ 356
Query: 344 DCAAIPRTIPVAPGMVFTVEPGV 366
G V+ +E
Sbjct: 357 ------------EGEVYAIETFG 367
Score = 29.1 bits (65), Expect = 2.8
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 90 KSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQ--ILAYP--P 145
S+ RE + K + + KPG T E+ K + R + + A P
Sbjct: 161 ASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFP 220
Query: 146 VVASGDNANVIHY---VHNNQKCCHGDLLLMDAGFSKPGR 182
S +N HY + + D+ +D G GR
Sbjct: 221 TGCSLNNC-AAHYTPNAGDTTVLQYDDICKIDFGTHISGR 259
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab;
HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A
2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Length = 329
Score = 32.2 bits (74), Expect = 0.26
Identities = 16/59 (27%), Positives = 20/59 (33%)
Query: 67 YVPRRKDYSWNVPKQLFHQLRLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHEL 125
Y S + S + E MR CR+A E G KPG T E+
Sbjct: 53 YADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEI 111
Score = 27.6 bits (62), Expect = 8.9
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 356 PGMVFTVEP 364
G VFT+EP
Sbjct: 265 SGHVFTIEP 273
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.28
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 80 KQLFHQLRLYKSDS 93
K+L L+LY DS
Sbjct: 23 KKLQASLKLYADDS 36
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold,
structur genomics, structural genomics consortium, SGC,
hydrolase; 1.95A {Plasmodium falciparum}
Length = 368
Score = 31.9 bits (73), Expect = 0.35
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 90 KSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHEL 125
++ E + +RE C + + PG T E+
Sbjct: 104 NNEEEIQRIREACILGRKTLDYAHTLVSPGVTTDEI 139
Score = 27.3 bits (61), Expect = 9.4
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 356 PGMVFTVEP 364
PG VFT+EP
Sbjct: 296 PGHVFTIEP 304
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for
infectious disease, S aminopeptidase, protease,
epidermic typhus; 1.70A {Rickettsia prowazekii} PDB:
3mr1_A
Length = 262
Score = 31.0 bits (71), Expect = 0.57
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 90 KSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHEL 125
++ + MR ++A+E KP T + L
Sbjct: 9 HTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSL 44
Score = 27.9 bits (63), Expect = 5.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 356 PGMVFTVEP 364
GM FTVEP
Sbjct: 198 EGMFFTVEP 206
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding
protein, RNA directed DNA methylation; 2.70A
{Arabidopsis thaliana}
Length = 172
Score = 29.9 bits (67), Expect = 0.93
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 13/85 (15%)
Query: 27 AVVIHGASDENFKS-----ELFVKRKDAKAELWDGPRTGKAQLNGYVPRRKDYSWNVPKQ 81
A+V + + + K + W K L G++ R DY N
Sbjct: 65 AIVEFNKDWNGLHNGLLFDKAYTVDGHGKKD-WLKKDGPKLGLYGWIARADDY--NGNNI 121
Query: 82 LFHQLRLY-----KSDSEQEMMRET 101
+ LR ++ +E R+
Sbjct: 122 IGENLRKTGDLKTIAELTEEEARKQ 146
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 30.5 bits (69), Expect = 0.96
Identities = 31/183 (16%), Positives = 52/183 (28%), Gaps = 24/183 (13%)
Query: 179 KPGRTEHELFTKFDYEVRMRGAQIL----AYPPVVASGDNANVIHYVHN----NQKCCHG 230
+PG T E+ + R +P ++ N+ HY N +
Sbjct: 69 RPGITLLEIVRSIEDSTRTLLKGERNNGIGFPAGMSM--NSCAAHYTVNPGEQDIVLKED 126
Query: 231 DLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLK----LCEKSDSA 286
D+L +D G +G D T E +T +K L +C+
Sbjct: 127 DVLKIDFGTHSDGRIMDSAFTVAFKENLEPLLVAARE-GTETGIKSLGVDVRVCDIGRDI 185
Query: 287 LNFIYRYAYVFQI---GFKFCPHHSSHYLG-MDVHDCAAIP-----RTIPVAPGVVFTVE 337
I Y + H + +H +IP T + + VE
Sbjct: 186 NEVISSYEVEIGGRMWPIRPISDLHGHSISQFRIHGGISIPAVNNRDTTRIKGDSFYAVE 245
Query: 338 PGM 340
Sbjct: 246 TFA 248
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION,
transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A*
3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A*
1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A*
1yhj_A*
Length = 312
Score = 28.6 bits (64), Expect = 4.1
Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 12/116 (10%)
Query: 145 PVVASGDNANVIHYVHNNQKCCHGDLLLMDAGFSKPGRTEHELFTKFDYE-----VRMRG 199
PV+ + YV + + + ++ A P + E EL + +R+
Sbjct: 114 PVLGDKWDGEGSMYVPEDLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMD 173
Query: 200 AQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPIS 255
P V VI L+++ + N S + +
Sbjct: 174 MLHSMGPDTV-------VITSSDLPSPQGSNYLIVLGSQRRRNPAGSVVMERIRMD 222
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 27.8 bits (61), Expect = 7.9
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 312 LGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVF 360
L M + A + T + PG++ GM++ + R P M
Sbjct: 276 LDMQSAEDAIVNNTREIVPGLIVG---GMELSEIDGANRMGPTFGAMAL 321
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 27.4 bits (60), Expect = 9.4
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 310 HYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFT 361
L M+ + A + T V PG++ T GM+V + PR P M+ +
Sbjct: 214 KALDMNTAEDAIVRLTREVVPGMIVT---GMEVAEIDGAPRMGPTFGAMMIS 262
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.433
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,500,307
Number of extensions: 392569
Number of successful extensions: 956
Number of sequences better than 10.0: 1
Number of HSP's gapped: 840
Number of HSP's successfully gapped: 83
Length of query: 413
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 317
Effective length of database: 4,021,377
Effective search space: 1274776509
Effective search space used: 1274776509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)