RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy247
(413 letters)
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 109 bits (272), Expect = 5e-28
Identities = 78/237 (32%), Positives = 118/237 (49%), Gaps = 6/237 (2%)
Query: 177 FSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMD 236
+PG E+ L + +E GA+ +Y +V SG+N ++HY N + GDL+L+D
Sbjct: 25 KCRPGMFEYHLEGEIHHEFNRHGARYPSYNTIVGSGENGCILHYTENECEMRDGDLVLID 84
Query: 237 AGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSALNFIYRYAYV 296
AGCE GY DITRT+P++G+FT Q+ +Y+IVL++ L+L S L +
Sbjct: 85 AGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRI 144
Query: 297 FQIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAP 356
G ++ A ++ R+ + P
Sbjct: 145 MVSGLVKLGILKGDV--DELIAQNAHRPFFMHGLSHWLGLDVHD--VGVYGQDRSRILEP 200
Query: 357 GMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILIDKSSNVENLSAMCPKNIDEIE 413
GMV TV PG+YI+ D E ++RG+GIRIEDDI+I + + ENL+A K +EIE
Sbjct: 201 GMVLTVAPGLYIAPD-AEVPEQYRGIGIRIEDDIVITE-TGNENLTASVVKKPEEIE 255
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 83.4 bits (205), Expect = 9e-19
Identities = 41/252 (16%), Positives = 86/252 (34%), Gaps = 39/252 (15%)
Query: 177 FSKPGRTEHELFTKFDYEVRMRGA------QILAYPPVVASGDNANVIHYVHNNQKCCH- 229
+ KPG + EL + + YP V N V H + ++ K
Sbjct: 29 YVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKD 88
Query: 230 GDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLC-------EK 282
GD++ +D +G+ D ++ + + + T + L I ++ L++ E
Sbjct: 89 GDIVNIDVTVIKDGFHGDTSKMFIVG-KPTIMGERLCRITQESLYLALRMVKPGINLREI 147
Query: 283 SDSALNFIYRYAYVFQIGFKFCPHHSSHYLGMD--VHDCAAIPRTIPVAPGVVFTVEPGM 340
+ F+ + + ++C H + V + + + PG+ FT+EP +
Sbjct: 148 GAAIQKFVEAEGF--SVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMV 205
Query: 341 DVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILIDKSSNVEN 400
+ + KD + + R + + E I++ + E
Sbjct: 206 -------------------NAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNG-CEI 245
Query: 401 LSAMCPKNIDEI 412
L+ I I
Sbjct: 246 LTLRKDDTIPAI 257
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 76.3 bits (186), Expect = 2e-16
Identities = 42/328 (12%), Positives = 88/328 (26%), Gaps = 94/328 (28%)
Query: 90 KSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGA------QILAY 143
KS E M+R RIA G + E+E+ + A +++
Sbjct: 3 KSAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMDT 62
Query: 144 PPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGFSKPGRTEHELFTKFDYEVRMRGAQIL 203
SG N + H +K GD+L ++ + +
Sbjct: 63 WTWFQSGINTDGAHNPVTTRKVNKGDILSLN----------------CFPMIAGYYTALE 106
Query: 204 AYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQK 263
+ D+ + V+ L+ A C + + Q+
Sbjct: 107 RTLFLDHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDIARELNEIFLKHDVLQY----- 161
Query: 264 VLYEIVLDTQLKLLKLCEKSDSALNFIYRYAYVFQIGFKFCPHHSSHYLGMDVHDCAAIP 323
+ + F H+ G+++
Sbjct: 162 -----------------------------RTFGYGHSFGTLSHYYGREAGLELR------ 186
Query: 324 RTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMG 383
+ +EPGM V ++EP + + + G
Sbjct: 187 ------EDIDTVLEPGM------------------VVSMEPMIMLPEGLPGA------GG 216
Query: 384 IRIEDDILIDKSSNVENLSAMCPKNIDE 411
R D ++++++ EN++ P ++
Sbjct: 217 YREHDILIVNENG-AENITK-FPYGPEK 242
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 74.6 bits (182), Expect = 5e-16
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 38/228 (16%)
Query: 179 KPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAG 238
G+ E E+ K +Y ++M GA+ A+ ++ASG + + H V ++++ GDL+++D G
Sbjct: 28 TEGKREREVAAKVEYLMKMNGAEKPAFDTIIASGHRSALPHGVASDKRIERGDLVVIDLG 87
Query: 239 CELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEK--SDSALNFIYRYAYV 296
N Y+SDITRT + G + Q+ +YEIVL+ Q + ++ + + L+ I R
Sbjct: 88 ALYNHYNSDITRTIVV-GSPNEKQREIYEIVLEAQKRAVEAAKPGMTAKELDSIAREIIK 146
Query: 297 FQIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAP 356
+ H H +G+++H+ + +
Sbjct: 147 EYGYGDYFIHSLGHGVGLEIHEW------------------------PRISQYDETVLKE 182
Query: 357 GMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILIDKSSNVENLSAM 404
GMV T+EPG+YI K G+RIED +LI ++ + L+
Sbjct: 183 GMVITIEPGIYIPKLG----------GVRIEDTVLITENGA-KRLTKT 219
Score = 56.9 bits (136), Expect = 4e-10
Identities = 27/102 (26%), Positives = 50/102 (49%)
Query: 90 KSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVAS 149
K+ E E++ + C IA + I G+ E E+ K +Y ++M GA+ A+ ++AS
Sbjct: 1 KTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKPAFDTIIAS 60
Query: 150 GDNANVIHYVHNNQKCCHGDLLLMDAGFSKPGRTEHELFTKF 191
G + + H V ++++ GDL+++D G T
Sbjct: 61 GHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIV 102
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 72.0 bits (175), Expect = 6e-15
Identities = 43/324 (13%), Positives = 87/324 (26%), Gaps = 86/324 (26%)
Query: 87 RLYKSDSEQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQILAYPPV 146
K+ SE E M++ + + +E PG+T ++
Sbjct: 2 IRIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDV--------------------- 40
Query: 147 VASGDNANVIHYVHNNQKCCHGDLLLMDAGFSKPGRTEHELFTKFDYEVRMRGAQILAYP 206
++ + + +G Y
Sbjct: 41 ------ETLVLEIFKKLRVKP----------------------------AFKGYGGYKYA 66
Query: 207 PVVASGDNANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLY 266
V+ + + + +D G G D T+ + G+ + K L
Sbjct: 67 TCVSVNEEVVHGLPLKEKVFKEGDIVS-VDVGAVYQGLYGDAAVTYIV-GETDERGKELV 124
Query: 267 EIVLDTQLKLLKLCEKSDSALNFIY-RYAYVFQIGFKFCPHHSSHYLGMDVHDCAAIPRT 325
+ + K +K+ + + + V +GF + H +G ++H+
Sbjct: 125 RVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVGRELHE------- 177
Query: 326 IPVAPGVVFTVEPGMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPE------- 378
P + PG V + GM +EP V + +
Sbjct: 178 ---DPQIPNYGTPGTGV----------VLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTV 224
Query: 379 FRGMGIRIEDDILIDKSSNVENLS 402
E ILI + + E L+
Sbjct: 225 DGSRCAHFEHTILITE-NGAEILT 247
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 218
Score = 62.8 bits (151), Expect = 5e-12
Identities = 32/226 (14%), Positives = 71/226 (31%), Gaps = 31/226 (13%)
Query: 177 FSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMD 236
++PG EL + + G + + + A+ Y + GD L +D
Sbjct: 23 LARPGMLLLELAESIEKMIMELGGKPAFPVNLSINEIAAHYTPYKGDTTVLKEGDYLKID 82
Query: 237 AGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSALNFIYRYAYV 296
G ++G+ +D T + + + + E ++A++ +
Sbjct: 83 VGVHIDGFIADTAVTVRVGMEEDEL--------------MEAAKEALNAAISVARAGVEI 128
Query: 297 FQIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRTIPVAP 356
++G V+ + + G+ + + +
Sbjct: 129 KELGKAIENEIRKRGFKPIVNLS--------GHKIERYKLHAGISIPNIYRPHDNYVLKE 180
Query: 357 GMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILIDKSSNVENLS 402
G VF +EP I G+ + E I+++K S V +
Sbjct: 181 GDVFAIEPFATIGAR--------NGIVAQFEHTIIVEKDS-VIVTT 217
Score = 50.5 bits (119), Expect = 7e-08
Identities = 26/169 (15%), Positives = 51/169 (30%), Gaps = 1/169 (0%)
Query: 94 EQEMMRETCRIASEGFKETIGFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGDNA 153
+ E + + IA + ++ I ++PG EL + + G + + + A
Sbjct: 2 DTEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPAFPVNLSINEIAA 61
Query: 154 NVIHYVHNNQKCCHGDLLLMDAGFSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASGD 213
+ Y + GD L +D G G T + A + A+
Sbjct: 62 HYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVT-VRVGMEEDELMEAAKEALNAAIS 120
Query: 214 NANVIHYVHNNQKCCHGDLLLMDAGCELNGYDSDITRTWPISGQFTDHQ 262
A + K ++ +N I R +G +
Sbjct: 121 VARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNI 169
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 57.5 bits (137), Expect = 4e-10
Identities = 31/240 (12%), Positives = 65/240 (27%), Gaps = 31/240 (12%)
Query: 177 FSKPGRTEHELFTKFDYEVRMRGAQILAYPPVVASG-----DNANVIHYVHNNQKCCHGD 231
+KPG T EL GA G N V H + + + GD
Sbjct: 29 ATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGD 88
Query: 232 LLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKLCEKSDSALNFIY 291
L+ +D NGY +D ++ + ++ + ++ + + N
Sbjct: 89 LVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGK 148
Query: 292 RYAYVFQIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEPGMDVHDCAAIPRT 351
+ + + + V +
Sbjct: 149 AVHNTARQNDLKVIKNLTGHGVGLSLHE------------------APAHVLNYFDPKDK 190
Query: 352 IPVAPGMVFTVEPGVYIS-------KDCKETRPEFRGMGIRIEDDILIDKSSNVENLSAM 404
+ GMV +EP + + K+ + +IE +++ K + +
Sbjct: 191 TLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTK-DGPILTTKI 249
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 57.6 bits (138), Expect = 5e-10
Identities = 36/246 (14%), Positives = 66/246 (26%), Gaps = 28/246 (11%)
Query: 167 HGDLLLMDAGFSKPGRTEHELFTKFDYEVRMRGAQILAYPPV---VASGDNANVIHYVHN 223
H + + KPG T E+ K + R + + N HY N
Sbjct: 67 HRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAHYTPN 126
Query: 224 NQKCCH---GDLLLMDAGCELNGYDSDITRTWPISGQFTDHQKVLYEIVLDTQLKLLKL- 279
D+ +D G ++G D T + ++ K + +
Sbjct: 127 AGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDATNTGIKCAGIDV 186
Query: 280 -CEKSDSALNFIYRYAYVFQIGFKFCPHHSSHYLGMDVHDCAAIPRTIPVAPGVVFTVEP 338
A+ + V G + + G + A V V+
Sbjct: 187 RLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQY------RIHAGKTVPIVKG 240
Query: 339 GMDVHDCAAIPRTIPVAPGMVFTVEPGVYISKDCKETRPEFRGMGIRIEDDILIDKSSNV 398
G + G V+ +E K + + + E IL+ +
Sbjct: 241 GEAT----------RMEEGEVYAIETFGSTGKGVVDIK---GSYTAQFEHTILLRPTC-K 286
Query: 399 ENLSAM 404
E +S
Sbjct: 287 EVVSRG 292
>d2v3za1 c.55.2.1 (A:1-176) Aminopeptidase P {Escherichia coli
[TaxId: 562]}
Length = 176
Score = 54.9 bits (131), Expect = 1e-09
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 1 MTEKIPYIFRQNTDFFYFTGCLEPDSAVVIHGASDENFKSELFVKRKDAKAELWDGPRTG 60
+ Y +RQN+DF+YFTG EP++ +V+ + D + S LF + +D AE+W G R G
Sbjct: 35 RSADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLG 94
Query: 61 KAQ 63
+
Sbjct: 95 QDA 97
>d1u0ka2 d.21.1.2 (A:131-283) Hypothetical protein PA4716
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 153
Score = 27.3 bits (60), Expect = 2.3
Identities = 17/105 (16%), Positives = 27/105 (25%), Gaps = 1/105 (0%)
Query: 138 AQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGFSKPGRTEHELFTKFDYEVRM 197
+ +PP V S ++ V + + K G L E R
Sbjct: 18 NDLSGHPPRVVSTGLPYLLLPVTAEALGRARQVNDLQEALDKLGAAFVYLLDVDGREGRT 77
Query: 198 RGAQILAYPPVVASGDNANVIHYVHNNQKCCHGDLLLMDAGCELN 242
L S V Y+ G+ ++ G L
Sbjct: 78 WDNLGLVEDVATGSA-AGPVAAYLVEYGLAARGEPFVLHQGRFLE 121
>d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus
[TaxId: 63363]}
Length = 397
Score = 27.3 bits (60), Expect = 4.2
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 343 HDCAAIPRTIPVAPGMV 359
D A+P V M+
Sbjct: 347 TDIVAVPAASVVGEAML 363
>d2cc3a1 d.17.4.26 (A:92-231) Type IV secretion system protein VirB8
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 140
Score = 26.0 bits (57), Expect = 5.9
Identities = 6/40 (15%), Positives = 17/40 (42%)
Query: 61 KAQLNGYVPRRKDYSWNVPKQLFHQLRLYKSDSEQEMMRE 100
A L YV R+ Y + + + + + + ++ ++
Sbjct: 8 NASLWEYVRLRESYDADTAQYAYDLVSNFSAPMVRQNYQQ 47
>d2bhma1 d.17.4.26 (A:97-235) Type IV secretion system protein VirB8
{Brucella melitensis [TaxId: 29459]}
Length = 139
Score = 25.6 bits (56), Expect = 6.4
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 61 KAQLNGYVPRRKDYSWNVPKQLFHQLRLYKSDSEQEMMRE 100
K L+ YV R+ Y W ++ + + + S SE +
Sbjct: 8 KYWLSQYVIARETYDWYTLQKDYETVGMLSSPSEGQSYAS 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.433
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,614,580
Number of extensions: 76477
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 27
Length of query: 413
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,199,356
Effective search space: 389790700
Effective search space used: 389790700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)