BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2470
(858 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 119/187 (63%), Gaps = 14/187 (7%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVV 406
+R LK+II SAT+DAE+ +++N +A +L+V G YPV +YY+ + +Y+ +
Sbjct: 237 RRPDLKIIIMSATLDAEKFQRYFN-----DAPLLAVPGRTYPVELYYTPEFQRDYLDSAI 291
Query: 407 DTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQ--REDL--KLLILPMHGSLPNN 462
T ++IH + GDIL F+ G ++IE + + +Q RE+ L + P++GSLP +
Sbjct: 292 RTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPH 351
Query: 463 EQIKVFRPTP-----RAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSL 517
+Q ++F P P R RK+VI+TNIAETS+TI GIVYV+DPGF K + +NP SL
Sbjct: 352 QQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESL 411
Query: 518 VVVPISK 524
+V PISK
Sbjct: 412 LVSPISK 418
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 74/97 (76%), Gaps = 1/97 (1%)
Query: 601 IGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMM 660
+ T+PRR++ S+A RV+EE+ LG VGY+IRF++ T+ + T +KYMT+G+L+RE M
Sbjct: 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTS-NKTILKYMTDGMLLREAM 201
Query: 661 TDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDK 697
D L +YS I+LDE HERT+ TDILMGLLK+++K +
Sbjct: 202 EDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR 238
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 89/156 (57%), Gaps = 13/156 (8%)
Query: 700 DFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTLLNIFKFYEKQ 759
+F+CS EI +I+++L V ++FI+P+ +A + F GD +TLLN++ ++
Sbjct: 535 EFQCSQEILTIVAMLSVPNVFIRPTKD--KKRADDAKNIFAHPDGDHITLLNVYHAFKSD 592
Query: 760 ENKK----QFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVT----SPRNTNAVLKCL 811
E + ++C ++ NY+ L A +++Q+ L+ + ++ L T SP+ + + K L
Sbjct: 593 EAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKAL 652
Query: 812 TNGFFSNAAYLHYSGV--YRTVRGNEDLYIHPSSVL 845
+GFF A SG Y TV+ N+D+ IHPS+VL
Sbjct: 653 ASGFFMQVAK-KRSGAKGYITVKDNQDVLIHPSTVL 687
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 46 RLYTEASFS-QLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALEL 104
RLYTE +F +L E + PE+ R+ LSS VL+LK LGI +++ F F PP + + ALE
Sbjct: 438 RLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEE 497
Query: 105 LYSLGAMDVNGNLTKPVGETMAEMPLHPIHAKVLLSS 141
L L +D GNLT P+G ++ PL P+ A +L+ S
Sbjct: 498 LNYLACLDDEGNLT-PLGRLASQFPLDPMLAVMLIGS 533
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 31/109 (28%)
Query: 1 MTEGILIENDDHDPSVEKYSVIMLDKVHERTIFTDILMEC-------------------- 40
MT+G+L+ D + +YS I+LD+ HERT+ TDILM
Sbjct: 191 MTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATL 250
Query: 41 -SRKFSRLYTEASFSQLNECT-------PPEMQRTELSSA---VLQLKA 78
+ KF R + +A + T PE QR L SA VLQ+ A
Sbjct: 251 DAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHA 299
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 119/187 (63%), Gaps = 14/187 (7%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVV 406
+R LK+II SAT+DAE+ +++N +A +L+V G YPV +YY+ + +Y+ +
Sbjct: 237 RRPDLKIIIMSATLDAEKFQRYFN-----DAPLLAVPGRTYPVELYYTPEFQRDYLDSAI 291
Query: 407 DTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQ--REDL--KLLILPMHGSLPNN 462
T ++IH + GDIL F+ G ++IE + + +Q RE+ L + P++GSLP +
Sbjct: 292 RTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPH 351
Query: 463 EQIKVFRPTP-----RAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSL 517
+Q ++F P P R RK+VI+TNIAETS+TI GIVYV+DPGF K + +NP SL
Sbjct: 352 QQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESL 411
Query: 518 VVVPISK 524
+V PISK
Sbjct: 412 LVSPISK 418
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 74/97 (76%), Gaps = 1/97 (1%)
Query: 601 IGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMM 660
+ T+PRR++ S+A RV+EE+ LG VGY+IRF++ T+ + T +KYMT+G+L+RE M
Sbjct: 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTS-NKTILKYMTDGMLLREAM 201
Query: 661 TDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDK 697
D L +YS I+LDE HERT+ TDILMGLLK+++K +
Sbjct: 202 EDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR 238
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 89/156 (57%), Gaps = 13/156 (8%)
Query: 700 DFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTLLNIFKFYEKQ 759
+F+CS EI +I+++L V ++FI+P+ +A + F GD +TLLN++ ++
Sbjct: 535 EFQCSQEILTIVAMLSVPNVFIRPTKD--KKRADDAKNIFAHPDGDHITLLNVYHAFKSD 592
Query: 760 ENKK----QFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVT----SPRNTNAVLKCL 811
E + ++C ++ NY+ L A +++Q+ L+ + ++ L T SP+ + + K L
Sbjct: 593 EAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKAL 652
Query: 812 TNGFFSNAAYLHYSGV--YRTVRGNEDLYIHPSSVL 845
+GFF A SG Y TV+ N+D+ IHPS+VL
Sbjct: 653 ASGFFMQVAK-KRSGAKGYITVKDNQDVLIHPSTVL 687
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 46 RLYTEASFS-QLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALEL 104
RLYTE +F +L E + PE+ R+ LSS VL+LK LGI +++ F F PP + + ALE
Sbjct: 438 RLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEE 497
Query: 105 LYSLGAMDVNGNLTKPVGETMAEMPLHPIHAKVLLSS 141
L L +D GNLT P+G ++ PL P+ A +L+ S
Sbjct: 498 LNYLACLDDEGNLT-PLGRLASQFPLDPMLAVMLIGS 533
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 31/109 (28%)
Query: 1 MTEGILIENDDHDPSVEKYSVIMLDKVHERTIFTDILMEC-------------------- 40
MT+G+L+ D + +YS I+LD+ HERT+ TDILM
Sbjct: 191 MTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATL 250
Query: 41 -SRKFSRLYTEASFSQLNECT-------PPEMQRTELSSA---VLQLKA 78
+ KF R + +A + T PE QR L SA VLQ+ A
Sbjct: 251 DAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHA 299
>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain
Length = 270
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 87/148 (58%), Gaps = 4/148 (2%)
Query: 703 CSDEIASILSLLQVQDIFIKPSSG-ALSLKARVLRRNFEVEQGDLLTLLNIFKFYEKQEN 761
CS+E+ +I+S+L VQ++F +P AL+ + + F +GD LTLL ++ ++ +
Sbjct: 67 CSEEMLTIVSMLSVQNVFYRPKDKQALADQKKA---KFHQTEGDHLTLLAVYNSWKNNKF 123
Query: 762 KKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNAAY 821
+C++ F + L+RA +++ QM+ ++ + + +V+ ++T V K + +GFF NAA
Sbjct: 124 SNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAK 183
Query: 822 LHYSGVYRTVRGNEDLYIHPSSVLYTLQ 849
YRT+ + +YIHPSS L+ Q
Sbjct: 184 KDPQEGYRTLIDQQVVYIHPSSALFNRQ 211
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 94 PAQNLRVALELLYSLGAMDVNGNLTKPVGETMAEMPLHPIHAKVLLSS 141
P + L A+E LY+LGA+D G LT+ +G MAE PL P+ K+L+ S
Sbjct: 16 PMETLITAMEQLYTLGALDDEGLLTR-LGRRMAEFPLEPMLCKMLIMS 62
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase
pdb|3LLM|B Chain B, Crystal Structure Analysis Of A Rna Helicase
Length = 235
Score = 66.6 bits (161), Expect = 6e-11, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 601 IGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMM 660
I +T+PRRIS S+A RV+ E G + GY++RF+ I + T G+L+R++
Sbjct: 112 IVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIXFCTVGVLLRKL- 170
Query: 661 TDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILK 695
+ +R S +++DE+HER I TD L+ +L+ +++
Sbjct: 171 -EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQ 204
>pdb|3BIC|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Mutase
pdb|3BIC|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Mutase
pdb|2XIJ|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Mutase In
Complex With Adenosylcobalamin
pdb|2XIQ|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Mutase In
Complex With Adenosylcobalamin And Malonyl-Coa
pdb|2XIQ|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Mutase In
Complex With Adenosylcobalamin And Malonyl-Coa
Length = 762
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 775 VLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNAAYL 822
+K A +N I++ ++S IP V P + +++CLTN + A L
Sbjct: 388 TVKSARIARNTQIIIQEESGIPKVADPWGGSYMMECLTNDVYDAALKL 435
>pdb|3HJG|A Chain A, Crystal Structure Of Putative Alpha-Ribazole-5'-Phosphate
Phosphatase Cobc From Vibrio Parahaemolyticus
pdb|3HJG|B Chain B, Crystal Structure Of Putative Alpha-Ribazole-5'-Phosphate
Phosphatase Cobc From Vibrio Parahaemolyticus
Length = 213
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 454 PMHGSLPNNEQIKVF-RPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNP 510
P H SLPN E + F + RA +I+ N +T G++ +I + W NP
Sbjct: 111 PAHHSLPNAESLSTFSQRVSRAWSQIINDINDNLLIVTHGGVIRIILAHVLGVDWRNP 168
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 432 EHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITI 491
E I+ ++K++ R+ L+ L L + P E++ V + R M ET +T
Sbjct: 543 EKILSVIKEWGTGRDTLRCLALATRDTPPKREEM-VLDDSSRFMEY--------ETDLTF 593
Query: 492 PGIVYVIDP 500
G+V ++DP
Sbjct: 594 VGVVGMLDP 602
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 432 EHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITI 491
E I+ ++K++ R+ L+ L L + P E++ V + R M ET +T
Sbjct: 544 EKILSVIKEWGTGRDTLRCLALATRDTPPKREEM-VLDDSSRFMEY--------ETDLTF 594
Query: 492 PGIVYVIDP 500
G+V ++DP
Sbjct: 595 VGVVGMLDP 603
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 432 EHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITI 491
E I+ ++K++ R+ L+ L L + P E++ V + R M ET +T
Sbjct: 543 EKILSVIKEWGTGRDTLRCLALATRDTPPKREEM-VLDDSSRFMEY--------ETDLTF 593
Query: 492 PGIVYVIDP 500
G+V ++DP
Sbjct: 594 VGVVGMLDP 602
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,712,540
Number of Sequences: 62578
Number of extensions: 956125
Number of successful extensions: 1972
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1936
Number of HSP's gapped (non-prelim): 28
length of query: 858
length of database: 14,973,337
effective HSP length: 107
effective length of query: 751
effective length of database: 8,277,491
effective search space: 6216395741
effective search space used: 6216395741
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)