Query psy2470
Match_columns 858
No_of_seqs 583 out of 3469
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 17:06:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922|consensus 100.0 2E-117 3E-122 991.3 46.2 554 205-858 70-638 (674)
2 KOG0924|consensus 100.0 5E-114 1E-118 947.9 37.5 552 204-857 374-943 (1042)
3 KOG0923|consensus 100.0 1E-112 3E-117 937.0 40.3 555 203-858 282-854 (902)
4 KOG0925|consensus 100.0 2E-107 4E-112 870.7 36.3 545 207-858 68-638 (699)
5 PRK11131 ATP-dependent RNA hel 100.0 1.5E-95 3E-100 888.3 45.9 546 205-857 93-667 (1294)
6 TIGR01967 DEAH_box_HrpA ATP-de 100.0 7.4E-92 1.6E-96 859.3 47.4 547 205-858 86-658 (1283)
7 COG1643 HrpA HrpA-like helicas 100.0 3E-90 6.5E-95 816.5 39.0 554 203-857 67-670 (845)
8 KOG0926|consensus 100.0 4.2E-85 9.2E-90 729.9 32.7 563 204-857 274-992 (1172)
9 KOG0920|consensus 100.0 1.3E-84 2.8E-89 763.9 34.5 554 205-857 192-818 (924)
10 PRK11664 ATP-dependent RNA hel 100.0 5.2E-72 1.1E-76 674.1 42.8 499 204-857 23-538 (812)
11 TIGR01970 DEAH_box_HrpB ATP-de 100.0 8E-72 1.7E-76 670.8 42.5 507 205-856 21-544 (819)
12 KOG0330|consensus 100.0 1.4E-47 3.1E-52 402.7 15.1 306 165-550 82-408 (476)
13 PHA02653 RNA helicase NPH-II; 100.0 7.2E-46 1.6E-50 436.8 28.0 371 204-668 182-589 (675)
14 KOG0331|consensus 100.0 3.6E-46 7.8E-51 417.4 21.2 319 160-546 107-445 (519)
15 KOG0921|consensus 100.0 8.3E-45 1.8E-49 410.8 16.8 550 206-857 398-1043(1282)
16 COG0513 SrmB Superfamily II DN 100.0 7.2E-45 1.6E-49 422.7 14.9 319 154-546 39-377 (513)
17 KOG0328|consensus 100.0 4.5E-44 9.7E-49 361.6 18.2 325 153-546 36-370 (400)
18 KOG0333|consensus 100.0 3E-43 6.5E-48 381.3 16.1 293 207-546 288-621 (673)
19 KOG0338|consensus 100.0 1.1E-42 2.4E-47 375.3 14.0 303 189-546 193-530 (691)
20 KOG0923|consensus 100.0 5E-43 1.1E-47 387.3 8.0 137 41-178 596-744 (902)
21 KOG0343|consensus 100.0 3.4E-42 7.3E-47 374.5 14.2 320 154-546 79-419 (758)
22 KOG0922|consensus 100.0 1.1E-42 2.3E-47 390.3 7.3 135 41-175 380-525 (674)
23 KOG0342|consensus 100.0 8E-41 1.7E-45 361.7 17.7 308 185-546 90-434 (543)
24 KOG0345|consensus 100.0 1.3E-40 2.8E-45 357.5 18.4 330 186-577 15-386 (567)
25 KOG0326|consensus 100.0 2.3E-40 5E-45 339.6 18.3 317 153-546 94-426 (459)
26 KOG0340|consensus 100.0 9E-40 2E-44 340.3 22.0 308 185-546 15-358 (442)
27 KOG0336|consensus 100.0 9.4E-40 2E-44 344.0 19.9 332 145-550 221-575 (629)
28 KOG0332|consensus 100.0 6.8E-40 1.5E-44 342.9 18.5 323 154-546 100-440 (477)
29 KOG0924|consensus 100.0 4.6E-41 9.9E-46 371.7 6.1 137 41-178 687-834 (1042)
30 KOG0339|consensus 100.0 1.1E-38 2.4E-43 343.8 15.0 289 206-546 265-572 (731)
31 PTZ00110 helicase; Provisional 100.0 2.4E-37 5.2E-42 363.0 21.4 286 207-546 173-481 (545)
32 KOG0335|consensus 100.0 5.6E-38 1.2E-42 345.8 14.2 327 160-546 90-441 (482)
33 PRK11776 ATP-dependent RNA hel 100.0 8.8E-38 1.9E-42 361.9 16.5 306 164-546 24-346 (460)
34 KOG0925|consensus 100.0 3.5E-39 7.5E-44 346.4 4.0 136 41-177 377-524 (699)
35 KOG0348|consensus 100.0 2.3E-37 5.1E-42 336.0 15.3 344 122-546 135-551 (708)
36 PRK04837 ATP-dependent RNA hel 100.0 1.5E-36 3.3E-41 347.8 18.0 314 163-546 27-359 (423)
37 PRK11192 ATP-dependent RNA hel 100.0 3.9E-36 8.5E-41 345.8 19.7 316 159-546 16-349 (434)
38 PRK11634 ATP-dependent RNA hel 100.0 4E-36 8.8E-41 355.9 19.9 308 162-546 24-349 (629)
39 PRK10590 ATP-dependent RNA hel 100.0 5.4E-36 1.2E-40 346.0 20.0 312 164-546 21-349 (456)
40 PLN00206 DEAD-box ATP-dependen 100.0 1.2E-35 2.6E-40 347.5 20.3 312 162-546 139-472 (518)
41 KOG0347|consensus 100.0 8.9E-37 1.9E-41 332.4 6.1 325 154-546 191-567 (731)
42 PRK04537 ATP-dependent RNA hel 100.0 3.9E-35 8.5E-40 345.5 19.0 310 163-546 28-361 (572)
43 KOG0341|consensus 100.0 3.4E-36 7.4E-41 315.3 6.6 289 207-546 213-525 (610)
44 KOG0327|consensus 100.0 1E-34 2.2E-39 307.5 14.3 315 153-546 35-367 (397)
45 PRK01297 ATP-dependent RNA hel 100.0 5.8E-34 1.3E-38 331.1 15.2 293 206-546 129-439 (475)
46 PRK02362 ski2-like helicase; P 100.0 4.7E-33 1E-37 338.8 23.2 410 206-680 44-517 (737)
47 KOG0334|consensus 100.0 9.5E-34 2.1E-38 331.6 15.8 305 191-546 379-717 (997)
48 PRK01172 ski2-like helicase; P 100.0 2E-32 4.3E-37 331.0 21.8 406 205-680 41-495 (674)
49 PTZ00424 helicase 45; Provisio 100.0 1.2E-32 2.6E-37 313.8 17.5 285 206-546 70-371 (401)
50 COG1643 HrpA HrpA-like helicas 100.0 1.1E-33 2.4E-38 335.8 9.3 105 41-146 377-482 (845)
51 TIGR03817 DECH_helic helicase/ 100.0 3.2E-31 6.9E-36 320.0 26.9 296 206-546 56-383 (742)
52 KOG0346|consensus 100.0 6.3E-32 1.4E-36 288.2 13.1 336 123-546 19-407 (569)
53 KOG4284|consensus 100.0 1.9E-31 4.1E-36 294.5 16.0 319 153-546 34-376 (980)
54 KOG0926|consensus 100.0 1.9E-32 4.2E-37 308.1 5.8 104 41-145 694-798 (1172)
55 PRK00254 ski2-like helicase; P 100.0 2.8E-30 6.1E-35 313.7 21.9 398 206-668 44-499 (720)
56 KOG0350|consensus 100.0 6E-31 1.3E-35 284.7 14.1 291 204-546 186-537 (620)
57 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.5E-30 3.2E-35 320.6 6.9 137 41-178 394-543 (1283)
58 TIGR00614 recQ_fam ATP-depende 100.0 3.3E-29 7.1E-34 290.5 17.5 279 205-546 30-330 (470)
59 PRK11131 ATP-dependent RNA hel 100.0 2.7E-30 5.8E-35 317.0 6.6 137 41-178 401-552 (1294)
60 KOG0337|consensus 100.0 3.5E-29 7.5E-34 266.3 12.2 314 156-546 33-365 (529)
61 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.4E-28 5.2E-33 289.9 19.3 284 207-546 37-388 (844)
62 KOG0344|consensus 100.0 3.5E-29 7.6E-34 277.7 11.0 326 156-546 148-492 (593)
63 PRK13767 ATP-dependent helicas 100.0 6E-28 1.3E-32 297.1 22.2 305 205-546 51-397 (876)
64 PRK11057 ATP-dependent DNA hel 100.0 5E-28 1.1E-32 288.0 18.1 281 206-551 45-347 (607)
65 PLN03137 ATP-dependent DNA hel 100.0 2.6E-28 5.7E-33 293.0 15.0 286 206-551 480-791 (1195)
66 PRK09751 putative ATP-dependen 100.0 6.1E-28 1.3E-32 301.3 18.7 296 206-541 1-375 (1490)
67 PRK10689 transcription-repair 99.9 4.7E-27 1E-31 292.2 19.4 282 201-546 621-916 (1147)
68 TIGR00580 mfd transcription-re 99.9 1.4E-26 2.9E-31 282.5 21.8 282 203-546 474-767 (926)
69 PRK11664 ATP-dependent RNA hel 99.9 3.3E-27 7.1E-32 285.8 10.5 105 41-146 329-433 (812)
70 PRK10917 ATP-dependent DNA hel 99.9 6.9E-26 1.5E-30 272.6 18.8 309 174-546 257-586 (681)
71 TIGR01970 DEAH_box_HrpB ATP-de 99.9 7E-27 1.5E-31 282.3 10.0 105 41-146 326-430 (819)
72 TIGR01587 cas3_core CRISPR-ass 99.9 5E-26 1.1E-30 255.5 14.1 286 206-546 4-333 (358)
73 TIGR01389 recQ ATP-dependent D 99.9 5.7E-26 1.2E-30 270.9 15.3 282 206-546 33-328 (591)
74 TIGR00643 recG ATP-dependent D 99.9 1E-25 2.2E-30 269.4 17.4 316 174-546 231-563 (630)
75 COG1204 Superfamily II helicas 99.9 1E-23 2.3E-28 252.5 21.7 407 204-680 50-529 (766)
76 PRK12898 secA preprotein trans 99.9 8.6E-24 1.9E-28 246.4 16.6 159 352-547 410-584 (656)
77 PRK09401 reverse gyrase; Revie 99.9 1.8E-24 3.9E-29 269.8 10.6 277 205-535 99-429 (1176)
78 KOG0329|consensus 99.9 1.4E-24 3.1E-29 217.4 6.7 291 145-546 40-352 (387)
79 PRK09200 preprotein translocas 99.9 1.6E-23 3.4E-28 249.1 16.6 103 417-546 427-538 (790)
80 KOG0920|consensus 99.9 4.8E-25 1E-29 261.1 0.4 130 41-171 534-676 (924)
81 TIGR03714 secA2 accessory Sec 99.9 3.2E-22 6.8E-27 235.8 19.2 102 417-546 423-534 (762)
82 TIGR03158 cas3_cyano CRISPR-as 99.9 6.8E-22 1.5E-26 221.1 18.7 269 205-535 18-357 (357)
83 KOG0349|consensus 99.9 9.6E-23 2.1E-27 216.9 11.0 269 246-546 286-612 (725)
84 COG1202 Superfamily II helicas 99.9 1.9E-21 4.2E-26 213.9 20.7 361 248-668 263-660 (830)
85 TIGR00963 secA preprotein tran 99.9 4.9E-22 1.1E-26 232.8 14.9 114 404-546 393-514 (745)
86 PHA02558 uvsW UvsW helicase; P 99.9 3.4E-21 7.4E-26 224.9 18.3 244 248-541 160-443 (501)
87 TIGR01054 rgy reverse gyrase. 99.9 6.4E-22 1.4E-26 247.5 12.2 259 206-507 98-412 (1171)
88 PRK14701 reverse gyrase; Provi 99.9 1.8E-21 4E-26 247.7 13.4 292 205-546 98-453 (1638)
89 COG1201 Lhr Lhr-like helicases 99.9 5.1E-21 1.1E-25 226.6 15.7 291 205-546 41-361 (814)
90 PRK13766 Hef nuclease; Provisi 99.8 1.4E-19 3.1E-24 222.9 17.7 106 416-546 363-476 (773)
91 PRK05580 primosome assembly pr 99.8 1.1E-19 2.3E-24 218.4 15.5 297 204-544 165-544 (679)
92 TIGR00595 priA primosomal prot 99.8 1.7E-19 3.8E-24 209.4 15.2 291 207-543 3-375 (505)
93 COG1111 MPH1 ERCC4-like helica 99.8 3.5E-18 7.5E-23 188.0 17.1 108 416-546 364-478 (542)
94 KOG3264|consensus 99.8 8.3E-19 1.8E-23 167.6 7.9 184 131-347 14-201 (221)
95 COG0514 RecQ Superfamily II DN 99.7 1.4E-17 3E-22 191.1 16.6 279 207-546 38-334 (590)
96 PRK13104 secA preprotein trans 99.7 2.4E-17 5.1E-22 196.1 16.3 80 402-492 430-509 (896)
97 PRK09694 helicase Cas3; Provis 99.7 3.9E-17 8.5E-22 198.1 18.2 98 417-539 559-664 (878)
98 COG1205 Distinct helicase fami 99.7 2.7E-17 5.8E-22 200.2 16.6 328 204-584 88-458 (851)
99 TIGR00603 rad25 DNA repair hel 99.7 9.7E-17 2.1E-21 189.7 20.0 101 417-546 495-604 (732)
100 PRK12906 secA preprotein trans 99.7 8.4E-17 1.8E-21 190.6 14.8 103 417-546 439-550 (796)
101 PRK12904 preprotein translocas 99.7 8E-17 1.7E-21 191.6 13.8 67 417-492 429-495 (830)
102 COG1200 RecG RecG-like helicas 99.7 1.9E-15 4.2E-20 173.1 17.2 310 173-546 257-588 (677)
103 KOG0354|consensus 99.6 2.6E-15 5.7E-20 174.4 17.8 113 415-546 410-526 (746)
104 PRK13107 preprotein translocas 99.6 3.6E-15 7.7E-20 177.2 15.6 81 401-492 434-514 (908)
105 KOG0951|consensus 99.6 3.3E-14 7.2E-19 168.5 20.0 351 167-546 281-701 (1674)
106 KOG0952|consensus 99.6 5E-14 1.1E-18 165.4 20.5 325 203-554 128-501 (1230)
107 COG1197 Mfd Transcription-repa 99.6 6.2E-14 1.3E-18 169.1 17.7 279 205-546 619-910 (1139)
108 TIGR00631 uvrb excinuclease AB 99.5 3.1E-14 6.8E-19 169.6 14.0 110 417-546 441-550 (655)
109 KOG0351|consensus 99.5 6.4E-14 1.4E-18 169.9 14.6 292 205-554 283-599 (941)
110 KOG0352|consensus 99.5 2.7E-14 5.9E-19 153.0 9.6 104 418-546 255-358 (641)
111 COG4581 Superfamily II RNA hel 99.5 3E-13 6.6E-18 163.1 17.7 319 185-546 121-534 (1041)
112 KOG0947|consensus 99.5 1.5E-13 3.2E-18 159.6 11.7 313 167-546 298-720 (1248)
113 PRK05298 excinuclease ABC subu 99.5 1.6E-13 3.4E-18 164.7 12.0 108 418-546 446-554 (652)
114 PRK04914 ATP-dependent helicas 99.5 1.2E-13 2.6E-18 168.9 10.7 118 405-546 480-602 (956)
115 KOG0948|consensus 99.5 6.6E-14 1.4E-18 158.9 7.4 295 204-546 147-536 (1041)
116 COG4098 comFA Superfamily II D 99.5 5.1E-13 1.1E-17 140.5 13.2 345 123-545 51-412 (441)
117 cd00079 HELICc Helicase superf 99.5 3.1E-13 6.8E-18 128.3 10.7 103 417-544 27-130 (131)
118 PRK12900 secA preprotein trans 99.4 3.5E-13 7.7E-18 160.9 11.8 157 352-546 535-708 (1025)
119 PF00271 Helicase_C: Helicase 99.4 6.7E-14 1.5E-18 121.3 3.6 72 449-538 7-78 (78)
120 COG1061 SSL2 DNA or RNA helica 99.4 1.3E-11 2.7E-16 142.1 19.1 94 418-537 283-376 (442)
121 PRK11448 hsdR type I restricti 99.4 9.4E-12 2E-16 155.7 19.0 110 417-546 697-812 (1123)
122 PF07717 OB_NTP_bind: Oligonuc 99.4 7.2E-13 1.6E-17 123.8 5.8 73 784-857 1-86 (114)
123 PRK12899 secA preprotein trans 99.3 2.1E-11 4.5E-16 145.7 15.3 115 403-546 555-678 (970)
124 KOG0353|consensus 99.3 3.3E-11 7E-16 127.6 13.0 94 406-506 304-398 (695)
125 KOG0950|consensus 99.2 2.5E-11 5.3E-16 142.7 11.6 114 419-546 461-608 (1008)
126 COG1203 CRISPR-associated heli 99.2 5E-11 1.1E-15 145.2 14.8 102 417-546 439-547 (733)
127 smart00490 HELICc helicase sup 99.2 6.7E-12 1.4E-16 108.8 5.2 81 433-538 2-82 (82)
128 PF04408 HA2: Helicase associa 99.2 5.5E-12 1.2E-16 115.3 4.7 92 619-750 2-102 (102)
129 PHA02653 RNA helicase NPH-II; 99.2 2.5E-11 5.5E-16 144.6 6.2 96 41-153 504-604 (675)
130 KOG0953|consensus 99.1 2.4E-09 5.1E-14 119.4 16.3 128 410-554 349-483 (700)
131 COG1110 Reverse gyrase [DNA re 99.0 1.5E-09 3.3E-14 128.5 13.5 133 349-507 275-420 (1187)
132 smart00847 HA2 Helicase associ 98.9 9.4E-10 2E-14 98.6 5.1 89 619-750 2-92 (92)
133 KOG0921|consensus 98.9 6E-11 1.3E-15 137.2 -5.5 341 186-577 409-801 (1282)
134 COG1198 PriA Primosomal protei 98.8 4E-08 8.7E-13 117.0 14.7 293 201-543 219-597 (730)
135 PRK12326 preprotein translocas 98.8 2.8E-08 6.1E-13 116.6 13.0 156 353-546 365-544 (764)
136 PF04408 HA2: Helicase associa 98.7 2.4E-09 5.2E-14 97.9 0.5 59 100-159 1-69 (102)
137 smart00847 HA2 Helicase associ 98.7 1.2E-08 2.6E-13 91.4 3.2 44 100-144 1-44 (92)
138 cd00268 DEADc DEAD-box helicas 98.6 8.4E-08 1.8E-12 98.8 7.4 139 204-367 39-193 (203)
139 TIGR00348 hsdR type I site-spe 98.6 6.3E-07 1.4E-11 108.5 15.0 101 418-540 514-638 (667)
140 PRK13103 secA preprotein trans 98.6 2.2E-07 4.9E-12 111.7 11.0 81 401-492 434-514 (913)
141 PF00270 DEAD: DEAD/DEAH box h 98.6 2E-08 4.4E-13 99.9 1.4 136 204-365 17-166 (169)
142 COG0556 UvrB Helicase subunit 98.5 6.9E-07 1.5E-11 99.9 12.6 168 350-546 386-554 (663)
143 CHL00122 secA preprotein trans 98.2 5.6E-06 1.2E-10 99.5 12.1 79 403-492 411-491 (870)
144 KOG4150|consensus 98.2 6.7E-06 1.5E-10 92.0 10.3 168 348-539 449-629 (1034)
145 PRK12903 secA preprotein trans 98.2 1E-05 2.3E-10 96.7 11.9 154 352-543 363-533 (925)
146 PRK12902 secA preprotein trans 98.1 1.9E-05 4.2E-10 94.8 12.7 80 402-492 425-506 (939)
147 TIGR01407 dinG_rel DnaQ family 98.1 3.5E-05 7.6E-10 96.3 14.8 139 400-545 657-811 (850)
148 TIGR02562 cas3_yersinia CRISPR 98.0 5.2E-05 1.1E-09 92.6 14.1 97 422-540 760-882 (1110)
149 cd00046 DEXDc DEAD-like helica 98.0 2.7E-05 5.9E-10 73.6 8.7 128 205-360 4-144 (144)
150 PLN03142 Probable chromatin-re 97.9 3E-05 6.5E-10 96.5 10.4 105 417-546 486-596 (1033)
151 COG4096 HsdR Type I site-speci 97.9 0.00019 4.2E-09 85.0 15.0 101 418-539 426-527 (875)
152 PF06862 DUF1253: Protein of u 97.9 0.001 2.2E-08 75.6 20.2 181 351-554 216-420 (442)
153 KOG1123|consensus 97.8 8.9E-05 1.9E-09 82.4 9.4 105 405-539 531-636 (776)
154 PRK14873 primosome assembly pr 97.7 0.00038 8.2E-09 83.8 14.6 112 248-367 190-310 (665)
155 PRK12901 secA preprotein trans 97.6 0.00018 3.8E-09 87.7 10.2 154 352-543 565-735 (1112)
156 smart00487 DEXDc DEAD-like hel 97.5 0.00017 3.6E-09 72.6 6.6 140 203-370 26-182 (201)
157 PF07652 Flavi_DEAD: Flaviviru 97.3 0.00014 2.9E-09 69.8 2.5 97 247-361 34-137 (148)
158 KOG0951|consensus 97.0 0.017 3.6E-07 71.4 16.3 298 206-546 1164-1491(1674)
159 KOG0949|consensus 96.9 0.0013 2.8E-08 78.8 5.8 78 452-546 965-1045(1330)
160 PF02399 Herpes_ori_bp: Origin 96.8 0.031 6.8E-07 67.3 16.6 104 418-546 282-385 (824)
161 PRK08074 bifunctional ATP-depe 96.7 0.03 6.6E-07 70.8 16.3 138 400-544 735-889 (928)
162 PRK11747 dinG ATP-dependent DN 96.6 0.017 3.7E-07 70.7 12.8 134 400-545 518-671 (697)
163 PRK07246 bifunctional ATP-depe 96.5 0.03 6.4E-07 69.8 14.1 134 400-545 631-780 (820)
164 TIGR00604 rad3 DNA repair heli 96.0 0.033 7.1E-07 68.6 11.3 191 350-549 441-675 (705)
165 COG1199 DinG Rad3-related DNA 95.9 0.13 2.9E-06 62.8 15.4 187 349-546 402-615 (654)
166 PF09637 Med18: Med18 protein; 95.3 0.0017 3.8E-08 69.2 -3.1 155 138-300 3-180 (250)
167 PRK07246 bifunctional ATP-depe 95.3 0.0088 1.9E-07 74.3 2.3 71 186-277 252-326 (820)
168 PF13307 Helicase_C_2: Helicas 94.3 0.023 5E-07 56.8 2.1 123 417-546 8-148 (167)
169 PRK01172 ski2-like helicase; P 94.3 0.019 4.1E-07 70.4 1.8 77 63-140 403-489 (674)
170 KOG0392|consensus 94.2 0.28 6E-06 61.0 11.0 109 419-546 1341-1451(1549)
171 KOG0391|consensus 94.1 0.3 6.6E-06 60.3 10.9 107 418-546 1276-1384(1958)
172 TIGR03117 cas_csf4 CRISPR-asso 94.0 0.022 4.9E-07 68.1 1.4 48 204-266 19-66 (636)
173 COG0653 SecA Preprotein transl 93.7 0.11 2.3E-06 63.3 6.3 78 404-492 417-494 (822)
174 KOG0385|consensus 93.4 0.48 1E-05 56.5 10.8 108 417-546 486-596 (971)
175 PF13245 AAA_19: Part of AAA d 92.8 0.045 9.8E-07 47.1 1.1 20 247-266 43-62 (76)
176 KOG0387|consensus 92.7 0.73 1.6E-05 55.2 10.8 108 418-546 546-655 (923)
177 TIGR03117 cas_csf4 CRISPR-asso 92.5 0.69 1.5E-05 55.7 10.8 89 401-499 454-556 (636)
178 TIGR01407 dinG_rel DnaQ family 92.4 0.074 1.6E-06 66.9 2.5 56 190-265 256-311 (850)
179 KOG2340|consensus 91.6 0.98 2.1E-05 51.8 9.8 112 419-554 553-673 (698)
180 PRK05580 primosome assembly pr 90.2 0.39 8.5E-06 58.8 5.7 74 418-498 190-263 (679)
181 KOG0347|consensus 90.0 0.61 1.3E-05 53.7 6.4 56 421-483 266-321 (731)
182 COG0553 HepA Superfamily II DN 89.8 1.2 2.6E-05 56.2 9.8 105 420-546 713-819 (866)
183 TIGR00596 rad1 DNA repair prot 89.7 0.6 1.3E-05 57.8 6.7 80 2-87 14-97 (814)
184 COG0513 SrmB Superfamily II DN 89.6 1.1 2.3E-05 53.2 8.4 72 421-498 102-179 (513)
185 TIGR00595 priA primosomal prot 89.3 0.83 1.8E-05 54.0 7.3 75 418-499 25-100 (505)
186 KOG0390|consensus 89.1 2.9 6.4E-05 51.0 11.7 104 422-546 598-704 (776)
187 PRK10917 ATP-dependent DNA hel 88.9 0.9 1.9E-05 55.8 7.4 79 418-499 310-390 (681)
188 KOG0389|consensus 88.9 2.1 4.6E-05 51.5 9.9 118 405-546 762-885 (941)
189 PF04851 ResIII: Type III rest 88.6 0.23 5E-06 49.4 1.8 58 189-266 13-70 (184)
190 COG1110 Reverse gyrase [DNA re 88.3 0.95 2.1E-05 55.8 6.8 77 406-483 113-189 (1187)
191 PRK08074 bifunctional ATP-depe 85.8 0.34 7.5E-06 61.5 1.4 69 186-273 264-336 (928)
192 KOG0388|consensus 85.7 4.3 9.4E-05 48.2 9.9 108 417-546 1043-1151(1185)
193 PRK14873 primosome assembly pr 85.7 1.6 3.5E-05 53.1 6.9 75 418-498 188-262 (665)
194 TIGR00580 mfd transcription-re 85.2 1.8 4E-05 54.6 7.3 79 418-499 500-580 (926)
195 KOG0384|consensus 84.6 4.8 0.0001 50.8 10.2 106 417-546 698-808 (1373)
196 PRK11747 dinG ATP-dependent DN 83.9 0.42 9.2E-06 58.7 0.9 61 188-264 34-96 (697)
197 COG0556 UvrB Helicase subunit 82.9 1.8 3.9E-05 49.9 5.3 52 201-273 33-84 (663)
198 cd00268 DEADc DEAD-box helicas 82.8 6 0.00013 40.2 8.9 75 417-498 68-148 (203)
199 PRK11634 ATP-dependent RNA hel 82.4 4 8.8E-05 49.6 8.5 77 417-499 73-156 (629)
200 PF00448 SRP54: SRP54-type pro 81.7 1.9 4.2E-05 44.2 4.6 55 204-273 4-58 (196)
201 KOG1000|consensus 81.0 5.1 0.00011 45.9 7.8 80 415-501 489-570 (689)
202 PRK11776 ATP-dependent RNA hel 80.8 4.9 0.00011 46.9 8.3 75 418-498 72-152 (460)
203 smart00489 DEXDc3 DEAD-like he 79.8 0.93 2E-05 49.5 1.7 66 187-266 16-81 (289)
204 smart00488 DEXDc2 DEAD-like he 79.8 0.93 2E-05 49.5 1.7 66 187-266 16-81 (289)
205 TIGR00643 recG ATP-dependent D 79.4 4.1 8.8E-05 49.7 7.2 79 418-499 284-364 (630)
206 PRK10689 transcription-repair 79.4 2.5 5.3E-05 54.8 5.5 79 418-499 649-729 (1147)
207 KOG1803|consensus 78.6 0.99 2.2E-05 52.7 1.4 45 206-267 206-250 (649)
208 KOG1002|consensus 78.4 6.5 0.00014 45.0 7.6 122 403-546 623-746 (791)
209 KOG0331|consensus 78.3 7.6 0.00017 45.4 8.5 72 420-498 167-244 (519)
210 PRK11192 ATP-dependent RNA hel 77.3 5.9 0.00013 45.8 7.4 74 418-498 73-152 (434)
211 PRK12723 flagellar biosynthesi 77.0 2.7 5.9E-05 47.8 4.3 15 201-215 174-188 (388)
212 COG1198 PriA Primosomal protei 76.8 3.3 7.2E-05 50.6 5.2 74 418-498 245-318 (730)
213 TIGR01054 rgy reverse gyrase. 76.7 4 8.6E-05 53.1 6.2 66 418-483 121-186 (1171)
214 PF00580 UvrD-helicase: UvrD/R 76.6 0.98 2.1E-05 49.2 0.7 24 248-271 47-70 (315)
215 PF13086 AAA_11: AAA domain; P 75.9 1 2.2E-05 46.5 0.6 23 246-268 53-75 (236)
216 PRK14701 reverse gyrase; Provi 75.0 4.8 0.0001 53.9 6.4 65 418-483 122-186 (1638)
217 KOG0349|consensus 73.6 1 2.2E-05 50.2 -0.1 61 419-483 287-347 (725)
218 PRK10590 ATP-dependent RNA hel 73.4 9.1 0.0002 44.7 7.7 73 420-499 77-156 (456)
219 TIGR01425 SRP54_euk signal rec 73.4 9.2 0.0002 44.1 7.4 43 96-139 7-52 (429)
220 PF14617 CMS1: U3-containing 9 72.4 2.6 5.5E-05 44.9 2.5 28 293-320 176-205 (252)
221 PRK12724 flagellar biosynthesi 71.7 2.7 5.8E-05 48.1 2.6 13 204-216 226-238 (432)
222 PRK04537 ATP-dependent RNA hel 71.4 8.3 0.00018 46.4 6.8 74 419-499 85-166 (572)
223 KOG1802|consensus 70.6 2.5 5.3E-05 49.9 2.0 51 206-273 430-480 (935)
224 PRK04837 ATP-dependent RNA hel 70.1 12 0.00025 43.3 7.5 74 419-499 84-164 (423)
225 PRK02362 ski2-like helicase; P 67.3 1 2.2E-05 55.9 -2.1 45 95-140 464-511 (737)
226 COG1199 DinG Rad3-related DNA 67.3 2.4 5.2E-05 51.9 1.1 47 204-266 37-83 (654)
227 PRK11889 flhF flagellar biosyn 67.0 5.3 0.00012 45.4 3.6 21 201-221 241-261 (436)
228 cd01126 TraG_VirD4 The TraG/Tr 66.4 5.6 0.00012 45.3 3.8 42 204-264 2-43 (384)
229 COG1618 Predicted nucleotide k 65.9 12 0.00027 37.0 5.4 16 200-215 4-19 (179)
230 TIGR00376 DNA helicase, putati 64.7 3.1 6.7E-05 50.6 1.3 21 248-268 203-223 (637)
231 PRK14974 cell division protein 63.7 5.5 0.00012 44.5 3.0 15 201-215 140-154 (336)
232 KOG0952|consensus 61.7 9.7 0.00021 47.5 4.7 85 204-307 946-1033(1230)
233 TIGR00614 recQ_fam ATP-depende 61.7 9.5 0.00021 44.7 4.6 59 418-483 51-109 (470)
234 PRK01297 ATP-dependent RNA hel 61.5 20 0.00043 42.1 7.3 76 418-499 162-244 (475)
235 KOG0338|consensus 60.9 21 0.00045 41.4 6.7 60 417-483 251-310 (691)
236 COG1419 FlhF Flagellar GTP-bin 60.8 13 0.00029 42.1 5.3 58 204-275 206-264 (407)
237 KOG0949|consensus 60.2 13 0.00028 46.2 5.3 140 204-370 529-682 (1330)
238 PF01745 IPT: Isopentenyl tran 60.1 4.1 9E-05 42.1 1.1 40 206-245 6-48 (233)
239 PTZ00110 helicase; Provisional 59.6 16 0.00034 43.8 6.1 73 420-499 205-284 (545)
240 KOG0339|consensus 57.7 23 0.00049 41.0 6.3 74 418-498 295-375 (731)
241 PRK13766 Hef nuclease; Provisi 56.8 32 0.00069 43.1 8.4 76 416-499 56-138 (773)
242 TIGR01389 recQ ATP-dependent D 55.3 20 0.00044 43.3 6.1 59 418-483 53-111 (591)
243 PRK14722 flhF flagellar biosyn 55.2 18 0.00039 40.9 5.2 12 204-215 140-151 (374)
244 PRK14729 miaA tRNA delta(2)-is 54.4 5.3 0.00012 43.8 0.8 19 204-222 7-25 (300)
245 PF13871 Helicase_C_4: Helicas 53.9 10 0.00022 41.0 2.8 62 468-539 54-115 (278)
246 PF00270 DEAD: DEAD/DEAH box h 53.0 30 0.00065 33.6 5.9 75 417-498 43-124 (169)
247 PRK13880 conjugal transfer cou 51.6 12 0.00026 45.6 3.3 45 201-264 175-219 (636)
248 PRK13897 type IV secretion sys 50.1 12 0.00027 45.1 3.0 50 202-271 159-208 (606)
249 COG0324 MiaA tRNA delta(2)-iso 49.5 9.8 0.00021 41.8 1.9 43 204-246 6-51 (308)
250 PRK10919 ATP-dependent DNA hel 49.4 7.5 0.00016 47.8 1.1 56 204-272 18-73 (672)
251 KOG0330|consensus 49.3 81 0.0018 35.6 8.8 86 406-498 117-209 (476)
252 COG1219 ClpX ATP-dependent pro 49.2 7.7 0.00017 42.4 1.0 19 204-222 100-118 (408)
253 KOG0329|consensus 49.2 30 0.00066 36.5 5.2 74 420-499 112-192 (387)
254 smart00382 AAA ATPases associa 48.9 8.3 0.00018 35.5 1.1 19 204-222 5-23 (148)
255 COG4889 Predicted helicase [Ge 48.7 19 0.00041 44.3 4.1 106 420-543 462-578 (1518)
256 PF02534 T4SS-DNA_transf: Type 48.6 9.2 0.0002 44.7 1.7 43 203-264 46-88 (469)
257 PRK05703 flhF flagellar biosyn 47.7 38 0.00082 39.2 6.4 12 204-215 224-235 (424)
258 PRK14723 flhF flagellar biosyn 47.5 24 0.00051 43.6 4.9 18 204-221 188-205 (767)
259 COG1111 MPH1 ERCC4-like helica 46.2 50 0.0011 38.4 6.8 74 417-498 57-136 (542)
260 PRK14721 flhF flagellar biosyn 45.9 15 0.00032 42.4 2.7 14 202-215 192-205 (420)
261 PF13555 AAA_29: P-loop contai 45.8 7.5 0.00016 32.1 0.2 10 206-215 28-37 (62)
262 PRK13822 conjugal transfer cou 45.2 17 0.00038 44.1 3.3 51 201-271 224-274 (641)
263 PF00176 SNF2_N: SNF2 family N 45.1 27 0.00058 37.6 4.5 132 209-370 33-185 (299)
264 PRK09401 reverse gyrase; Revie 45.0 51 0.0011 43.2 7.6 78 417-498 122-206 (1176)
265 PF01935 DUF87: Domain of unkn 44.9 7.7 0.00017 40.5 0.2 15 201-215 23-37 (229)
266 KOG1533|consensus 44.9 8.8 0.00019 40.1 0.6 16 200-215 1-16 (290)
267 PRK06995 flhF flagellar biosyn 44.6 30 0.00066 40.5 5.0 57 203-273 258-315 (484)
268 KOG1015|consensus 43.8 71 0.0015 40.0 7.8 124 408-546 1130-1274(1567)
269 COG0552 FtsY Signal recognitio 43.6 80 0.0017 35.0 7.7 18 198-215 136-153 (340)
270 PF13207 AAA_17: AAA domain; P 42.5 10 0.00023 34.9 0.7 18 205-222 3-20 (121)
271 TIGR02647 DNA conserved hypoth 41.4 29 0.00063 29.6 3.0 36 91-127 29-66 (77)
272 PLN02165 adenylate isopentenyl 41.0 11 0.00024 41.8 0.8 23 204-226 46-68 (334)
273 PRK11057 ATP-dependent DNA hel 40.9 36 0.00078 41.3 5.1 59 418-483 65-123 (607)
274 PLN03137 ATP-dependent DNA hel 40.6 35 0.00075 43.9 4.9 59 418-483 500-560 (1195)
275 PRK12726 flagellar biosynthesi 40.6 28 0.0006 39.6 3.7 20 203-222 208-227 (407)
276 TIGR03817 DECH_helic helicase/ 40.3 74 0.0016 39.7 7.8 74 417-499 80-164 (742)
277 PTZ00424 helicase 45; Provisio 40.0 1.1E+02 0.0023 34.8 8.6 76 417-499 95-177 (401)
278 COG2805 PilT Tfp pilus assembl 39.6 11 0.00024 41.0 0.4 11 205-215 129-139 (353)
279 PF13604 AAA_30: AAA domain; P 39.1 9.6 0.00021 39.0 -0.1 18 248-265 48-65 (196)
280 smart00492 HELICc3 helicase su 38.4 51 0.0011 31.9 4.8 84 460-543 32-133 (141)
281 PRK11054 helD DNA helicase IV; 38.4 14 0.00029 45.5 1.0 54 204-271 212-266 (684)
282 PRK11773 uvrD DNA-dependent he 38.2 19 0.00041 44.7 2.2 56 204-272 25-80 (721)
283 PLN00206 DEAD-box ATP-dependen 38.2 78 0.0017 37.6 7.3 75 418-499 196-277 (518)
284 TIGR02760 TraI_TIGR conjugativ 38.2 3.6E+02 0.0079 37.7 14.2 56 418-474 626-685 (1960)
285 PF07652 Flavi_DEAD: Flaviviru 38.1 9.4 0.0002 37.1 -0.4 17 13-29 90-106 (148)
286 TIGR02767 TraG-Ti Ti-type conj 37.9 26 0.00056 42.5 3.2 45 201-264 211-255 (623)
287 TIGR01075 uvrD DNA helicase II 37.6 18 0.0004 44.8 2.0 56 204-272 20-75 (715)
288 COG2804 PulE Type II secretory 37.5 12 0.00026 43.5 0.3 11 205-215 262-272 (500)
289 PRK13850 type IV secretion sys 37.3 22 0.00047 43.5 2.5 51 201-271 139-189 (670)
290 TIGR01447 recD exodeoxyribonuc 36.8 38 0.00083 40.9 4.4 54 204-269 163-216 (586)
291 PRK14969 DNA polymerase III su 36.5 54 0.0012 39.1 5.6 26 190-215 27-52 (527)
292 TIGR01074 rep ATP-dependent DN 36.3 16 0.00035 44.8 1.1 56 203-271 16-71 (664)
293 PF05049 IIGP: Interferon-indu 36.3 6.5 0.00014 44.4 -2.0 45 185-240 18-63 (376)
294 COG1136 SalX ABC-type antimicr 36.2 12 0.00027 39.2 0.1 12 204-215 34-45 (226)
295 TIGR00604 rad3 DNA repair heli 35.9 19 0.0004 44.6 1.6 65 187-268 18-82 (705)
296 PRK07003 DNA polymerase III su 35.5 61 0.0013 40.1 5.7 27 189-215 26-52 (830)
297 PF01078 Mg_chelatase: Magnesi 35.3 16 0.00035 37.8 0.8 30 201-230 22-51 (206)
298 KOG0389|consensus 35.2 93 0.002 38.2 7.0 66 415-488 445-513 (941)
299 COG0514 RecQ Superfamily II DN 34.9 70 0.0015 38.4 6.0 59 418-483 57-115 (590)
300 PRK10416 signal recognition pa 34.6 1.6E+02 0.0036 32.6 8.7 22 201-222 114-135 (318)
301 cd01131 PilT Pilus retraction 34.6 14 0.0003 37.8 0.2 11 205-215 5-15 (198)
302 PRK14958 DNA polymerase III su 34.6 59 0.0013 38.6 5.4 27 189-215 26-52 (509)
303 PF01695 IstB_IS21: IstB-like 34.0 24 0.00053 35.5 1.9 23 193-215 39-61 (178)
304 TIGR02880 cbbX_cfxQ probable R 33.2 24 0.00052 38.4 1.8 16 200-215 57-72 (284)
305 PRK00091 miaA tRNA delta(2)-is 33.2 18 0.0004 39.8 0.9 23 203-225 6-28 (307)
306 PF13401 AAA_22: AAA domain; P 33.0 14 0.00031 34.3 0.0 11 205-215 8-18 (131)
307 PRK06547 hypothetical protein; 32.5 30 0.00065 34.7 2.2 31 191-222 6-36 (172)
308 KOG0350|consensus 32.5 1.1E+02 0.0023 35.7 6.7 75 419-496 216-298 (620)
309 COG3840 ThiQ ABC-type thiamine 32.5 22 0.00047 36.1 1.2 25 204-228 28-53 (231)
310 COG1102 Cmk Cytidylate kinase 32.5 21 0.00045 35.5 1.0 19 204-222 3-21 (179)
311 cd00009 AAA The AAA+ (ATPases 32.4 17 0.00036 33.8 0.3 13 203-215 21-33 (151)
312 PF10593 Z1: Z1 domain; Inter 32.3 1.1E+02 0.0025 32.3 6.6 78 449-546 110-189 (239)
313 PRK12898 secA preprotein trans 32.2 1.4E+02 0.003 36.5 8.0 63 418-490 144-206 (656)
314 PRK10875 recD exonuclease V su 32.0 24 0.00051 42.8 1.6 52 204-268 170-221 (615)
315 PRK08233 hypothetical protein; 31.9 20 0.00044 35.5 0.9 24 203-226 5-28 (182)
316 TIGR00631 uvrb excinuclease AB 31.8 33 0.00072 42.0 2.8 75 176-273 7-81 (655)
317 COG3973 Superfamily I DNA and 31.7 32 0.00069 40.9 2.5 56 204-272 229-285 (747)
318 PRK09751 putative ATP-dependen 31.4 1.7E+02 0.0036 39.4 9.1 78 418-499 37-131 (1490)
319 PF05127 Helicase_RecD: Helica 31.0 31 0.00067 34.8 2.0 122 206-370 2-138 (177)
320 PF12846 AAA_10: AAA-like doma 30.1 18 0.00039 38.9 0.2 13 203-215 3-15 (304)
321 PF09848 DUF2075: Uncharacteri 30.0 38 0.00083 38.0 2.8 50 205-269 5-54 (352)
322 PRK07261 topology modulation p 29.6 23 0.00051 35.3 0.9 18 205-222 4-21 (171)
323 PLN02748 tRNA dimethylallyltra 29.5 22 0.00048 41.4 0.8 26 201-226 22-47 (468)
324 PF04665 Pox_A32: Poxvirus A32 29.4 20 0.00043 38.0 0.3 15 201-215 13-27 (241)
325 PF13191 AAA_16: AAA ATPase do 29.4 31 0.00067 34.1 1.7 28 188-215 9-38 (185)
326 PF13238 AAA_18: AAA domain; P 29.3 19 0.00041 33.2 0.1 17 206-222 3-19 (129)
327 TIGR02621 cas3_GSU0051 CRISPR- 29.1 1.6E+02 0.0035 37.0 8.1 61 418-482 61-142 (844)
328 PF02562 PhoH: PhoH-like prote 29.0 26 0.00056 36.3 1.1 17 206-222 24-40 (205)
329 PRK13876 conjugal transfer cou 29.0 38 0.00083 41.4 2.7 51 201-271 144-194 (663)
330 KOG0340|consensus 28.7 1.1E+02 0.0024 34.2 5.7 56 421-483 78-133 (442)
331 PRK12323 DNA polymerase III su 28.6 79 0.0017 38.5 5.1 27 189-215 26-52 (700)
332 PF00004 AAA: ATPase family as 28.2 21 0.00046 33.0 0.2 10 206-215 3-12 (132)
333 PF07517 SecA_DEAD: SecA DEAD- 28.1 11 0.00024 40.6 -1.9 52 248-306 120-178 (266)
334 CHL00181 cbbX CbbX; Provisiona 28.0 32 0.0007 37.5 1.7 26 190-215 46-73 (287)
335 PF00406 ADK: Adenylate kinase 27.8 25 0.00054 34.0 0.7 12 206-217 1-12 (151)
336 KOG0701|consensus 27.7 30 0.00064 45.9 1.5 98 420-538 294-399 (1606)
337 COG0563 Adk Adenylate kinase a 27.6 28 0.00061 35.1 1.1 19 204-222 3-21 (178)
338 TIGR02524 dot_icm_DotB Dot/Icm 27.5 22 0.00047 40.2 0.2 12 204-215 137-148 (358)
339 TIGR00963 secA preprotein tran 27.5 2E+02 0.0044 35.6 8.3 58 418-484 97-154 (745)
340 PRK09111 DNA polymerase III su 27.3 90 0.0019 37.8 5.4 26 190-215 35-60 (598)
341 cd01130 VirB11-like_ATPase Typ 27.2 22 0.00048 35.9 0.2 13 203-215 27-39 (186)
342 cd02020 CMPK Cytidine monophos 27.1 28 0.0006 33.0 0.9 18 205-222 3-20 (147)
343 KOG0335|consensus 27.1 1.2E+02 0.0026 35.4 5.9 73 419-498 153-231 (482)
344 KOG1784|consensus 27.1 21 0.00045 31.3 -0.0 20 21-40 35-54 (96)
345 PRK10536 hypothetical protein; 27.0 27 0.0006 37.4 0.9 20 203-222 76-95 (262)
346 KOG0246|consensus 26.9 61 0.0013 38.1 3.6 16 104-119 137-152 (676)
347 TIGR01073 pcrA ATP-dependent D 26.8 35 0.00076 42.4 1.9 55 204-271 20-74 (726)
348 PF00437 T2SE: Type II/IV secr 26.7 22 0.00048 38.1 0.1 12 204-215 130-141 (270)
349 TIGR00174 miaA tRNA isopenteny 26.5 28 0.00061 38.0 0.9 22 205-226 3-24 (287)
350 TIGR02881 spore_V_K stage V sp 26.5 31 0.00066 37.0 1.1 15 201-215 42-56 (261)
351 KOG0336|consensus 26.4 1.9E+02 0.004 33.0 7.0 73 418-498 294-372 (629)
352 KOG1384|consensus 26.3 30 0.00066 38.1 1.0 26 204-229 10-35 (348)
353 PHA02244 ATPase-like protein 26.2 42 0.00091 38.0 2.1 26 187-215 108-133 (383)
354 PRK08118 topology modulation p 26.0 30 0.00064 34.4 0.9 19 204-222 4-22 (167)
355 KOG1132|consensus 25.9 5.5E+02 0.012 32.3 11.4 160 351-511 481-663 (945)
356 PF05970 PIF1: PIF1-like helic 25.8 26 0.00055 39.7 0.4 45 201-262 22-66 (364)
357 PLN03025 replication factor C 25.7 45 0.00098 36.8 2.4 26 189-215 23-48 (319)
358 smart00491 HELICc2 helicase su 25.7 67 0.0014 31.1 3.2 79 465-543 34-134 (142)
359 COG1197 Mfd Transcription-repa 25.4 2E+02 0.0043 37.2 7.9 79 417-499 642-723 (1139)
360 KOG4439|consensus 25.2 2.8E+02 0.006 34.0 8.5 83 449-546 770-855 (901)
361 COG1074 RecB ATP-dependent exo 25.1 38 0.00082 44.4 1.8 54 204-269 19-72 (1139)
362 KOG0386|consensus 25.0 1.8E+02 0.0038 36.9 7.1 108 417-546 725-835 (1157)
363 cd00071 GMPK Guanosine monopho 25.0 34 0.00073 32.8 1.0 12 206-217 4-15 (137)
364 TIGR00101 ureG urease accessor 25.0 26 0.00056 36.0 0.2 15 201-215 1-15 (199)
365 PRK06731 flhF flagellar biosyn 24.9 1.6E+02 0.0035 31.8 6.3 13 203-215 77-89 (270)
366 PF07724 AAA_2: AAA domain (Cd 24.8 47 0.001 33.2 2.1 11 205-215 7-17 (171)
367 TIGR02525 plasmid_TraJ plasmid 24.5 27 0.00059 39.6 0.3 12 204-215 152-163 (372)
368 cd01124 KaiC KaiC is a circadi 24.3 32 0.00068 34.3 0.7 10 206-215 4-13 (187)
369 PF07728 AAA_5: AAA domain (dy 24.3 27 0.00058 33.1 0.2 10 206-215 4-13 (139)
370 COG1124 DppF ABC-type dipeptid 24.2 37 0.0008 35.9 1.1 12 204-215 36-47 (252)
371 COG0606 Predicted ATPase with 24.1 36 0.00079 39.4 1.2 40 190-229 186-226 (490)
372 PF00485 PRK: Phosphoribulokin 24.0 25 0.00054 35.7 -0.1 19 204-222 2-20 (194)
373 cd01120 RecA-like_NTPases RecA 23.9 29 0.00063 33.1 0.4 10 206-215 4-13 (165)
374 COG1120 FepC ABC-type cobalami 23.6 19 0.0004 38.6 -1.2 11 205-215 32-42 (258)
375 PRK10436 hypothetical protein; 23.6 30 0.00064 40.5 0.4 12 204-215 221-232 (462)
376 PRK13104 secA preprotein trans 23.6 2.6E+02 0.0055 35.5 8.3 57 418-483 123-179 (896)
377 PRK12402 replication factor C 23.6 47 0.001 36.6 2.0 28 187-215 23-50 (337)
378 PRK14531 adenylate kinase; Pro 23.4 36 0.00079 34.2 1.0 20 203-222 4-23 (183)
379 PRK06217 hypothetical protein; 23.3 35 0.00076 34.3 0.8 19 204-222 4-22 (183)
380 PF06309 Torsin: Torsin; Inte 23.3 56 0.0012 31.1 2.1 18 198-215 50-67 (127)
381 COG1222 RPT1 ATP-dependent 26S 23.3 40 0.00087 37.7 1.3 18 198-215 182-199 (406)
382 PRK05541 adenylylsulfate kinas 23.3 35 0.00075 33.9 0.8 19 197-215 3-21 (176)
383 cd00046 DEXDc DEAD-like helica 23.1 3.1E+02 0.0068 24.6 7.3 61 416-484 28-88 (144)
384 TIGR01313 therm_gnt_kin carboh 23.1 35 0.00077 33.3 0.8 21 206-226 3-23 (163)
385 KOG0745|consensus 23.0 42 0.00091 38.4 1.4 20 203-222 228-247 (564)
386 COG0470 HolB ATPase involved i 23.0 58 0.0013 35.5 2.6 29 194-222 17-45 (325)
387 PRK13833 conjugal transfer pro 22.9 30 0.00065 38.4 0.2 13 203-215 146-158 (323)
388 cd02023 UMPK Uridine monophosp 22.8 29 0.00063 35.2 0.1 11 205-215 3-13 (198)
389 smart00493 TOPRIM topoisomeras 22.7 1.3E+02 0.0028 25.0 4.2 54 421-483 2-55 (76)
390 cd01129 PulE-GspE PulE/GspE Th 22.6 32 0.00069 37.1 0.3 12 204-215 83-94 (264)
391 TIGR02782 TrbB_P P-type conjug 22.5 31 0.00068 37.8 0.3 13 203-215 134-146 (299)
392 PF05729 NACHT: NACHT domain 22.5 34 0.00073 33.0 0.5 24 347-370 117-140 (166)
393 PRK13851 type IV secretion sys 22.5 39 0.00085 37.9 1.0 13 203-215 164-176 (344)
394 cd00984 DnaB_C DnaB helicase C 22.5 63 0.0014 33.8 2.6 10 206-215 18-27 (242)
395 PRK12903 secA preprotein trans 22.4 31 0.00067 42.9 0.3 77 209-305 99-178 (925)
396 COG1126 GlnQ ABC-type polar am 22.4 31 0.00067 35.9 0.2 12 204-215 31-42 (240)
397 TIGR01420 pilT_fam pilus retra 22.3 31 0.00068 38.6 0.2 12 204-215 125-136 (343)
398 PRK00300 gmk guanylate kinase; 22.2 45 0.00098 33.9 1.4 23 204-226 8-30 (205)
399 PF02456 Adeno_IVa2: Adenoviru 22.2 34 0.00073 37.5 0.4 15 201-215 87-101 (369)
400 cd01363 Motor_domain Myosin an 22.1 35 0.00076 34.5 0.6 10 206-215 29-38 (186)
401 PRK00131 aroK shikimate kinase 22.0 40 0.00088 32.9 0.9 25 201-225 4-28 (175)
402 PRK00254 ski2-like helicase; P 21.8 1.3E+02 0.0027 37.5 5.4 71 418-499 68-145 (720)
403 CHL00195 ycf46 Ycf46; Provisio 21.8 2.1E+02 0.0046 33.7 7.0 130 90-222 139-280 (489)
404 TIGR01448 recD_rel helicase, p 21.7 54 0.0012 40.7 2.1 46 204-264 341-386 (720)
405 TIGR01359 UMP_CMP_kin_fam UMP- 21.6 40 0.00088 33.5 0.9 15 206-220 4-18 (183)
406 PRK14737 gmk guanylate kinase; 21.6 53 0.0011 33.3 1.7 33 204-236 7-39 (186)
407 COG0572 Udk Uridine kinase [Nu 21.6 42 0.00091 35.0 1.0 26 201-226 8-33 (218)
408 cd02019 NK Nucleoside/nucleoti 21.6 34 0.00073 28.5 0.2 10 206-215 4-13 (69)
409 PF00005 ABC_tran: ABC transpo 21.5 32 0.0007 32.3 0.1 12 204-215 14-25 (137)
410 PF06745 KaiC: KaiC; InterPro 21.5 64 0.0014 33.5 2.4 12 204-215 22-33 (226)
411 TIGR03263 guanyl_kin guanylate 21.4 51 0.0011 32.7 1.6 22 206-227 6-27 (180)
412 PRK13900 type IV secretion sys 21.1 35 0.00076 38.1 0.3 13 203-215 162-174 (332)
413 PF01580 FtsK_SpoIIIE: FtsK/Sp 21.0 32 0.00069 35.2 -0.0 13 203-215 40-52 (205)
414 cd03273 ABC_SMC2_euk Eukaryoti 21.0 38 0.00082 35.9 0.5 11 205-215 29-39 (251)
415 PRK14530 adenylate kinase; Pro 21.0 41 0.0009 34.7 0.8 19 204-222 6-24 (215)
416 PRK13767 ATP-dependent helicas 20.9 4E+02 0.0087 34.0 9.7 77 419-499 85-179 (876)
417 COG1474 CDC6 Cdc6-related prot 20.9 40 0.00086 38.2 0.7 17 199-215 40-56 (366)
418 TIGR02533 type_II_gspE general 20.8 36 0.00078 40.1 0.3 12 204-215 245-256 (486)
419 PLN02840 tRNA dimethylallyltra 20.8 42 0.0009 38.6 0.8 24 203-226 23-46 (421)
420 KOG0731|consensus 20.7 44 0.00095 41.1 1.0 22 201-222 344-365 (774)
421 PRK06762 hypothetical protein; 20.7 36 0.00079 33.3 0.3 16 200-215 1-16 (166)
422 PRK06526 transposase; Provisio 20.7 35 0.00076 36.5 0.2 24 192-215 89-112 (254)
423 TIGR00017 cmk cytidylate kinas 20.6 43 0.00094 34.9 0.9 22 201-222 2-23 (217)
424 PRK08903 DnaA regulatory inact 20.6 67 0.0015 33.3 2.3 13 203-215 44-56 (227)
425 TIGR02538 type_IV_pilB type IV 20.5 37 0.0008 40.9 0.4 12 204-215 319-330 (564)
426 cd03241 ABC_RecN RecN ATPase i 20.5 37 0.0008 36.7 0.3 10 206-215 26-35 (276)
427 PF08303 tRNA_lig_kinase: tRNA 20.5 47 0.001 33.1 1.0 21 207-227 5-25 (168)
428 PRK05480 uridine/cytidine kina 20.4 36 0.00078 34.9 0.2 20 201-220 6-25 (209)
429 PF13671 AAA_33: AAA domain; P 20.4 35 0.00076 32.2 0.1 10 206-215 4-13 (143)
430 COG1116 TauB ABC-type nitrate/ 20.3 50 0.0011 35.1 1.2 22 205-226 33-55 (248)
431 PRK04296 thymidine kinase; Pro 20.2 41 0.00089 34.1 0.6 10 206-215 7-16 (190)
432 PHA00729 NTP-binding motif con 20.2 44 0.00096 35.1 0.8 21 202-222 18-38 (226)
433 COG0444 DppD ABC-type dipeptid 20.1 45 0.00098 36.7 0.9 23 204-226 34-56 (316)
434 PTZ00301 uridine kinase; Provi 20.1 36 0.00077 35.4 0.1 12 204-215 6-17 (210)
435 PRK04220 2-phosphoglycerate ki 20.1 59 0.0013 35.7 1.8 24 199-222 90-113 (301)
436 KOG2373|consensus 20.1 41 0.00089 37.3 0.5 9 207-215 279-287 (514)
No 1
>KOG0922|consensus
Probab=100.00 E-value=1.6e-117 Score=991.26 Aligned_cols=554 Identities=36% Similarity=0.587 Sum_probs=517.9
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-++|+|||||| +++|+++.. .|...... +-|.+|+|+||.++|+|||+|+|+++|.. |||.
T Consensus 70 IviGeTGsGKS-------TQipQyL~e--------aG~~~~g~-I~~TQPRRVAavslA~RVAeE~~~~lG~~---VGY~ 130 (674)
T KOG0922|consen 70 IVIGETGSGKS-------TQIPQYLAE--------AGFASSGK-IACTQPRRVAAVSLAKRVAEEMGCQLGEE---VGYT 130 (674)
T ss_pred EEEcCCCCCcc-------ccHhHHHHh--------cccccCCc-EEeecCchHHHHHHHHHHHHHhCCCcCce---eeeE
Confidence 35799999999 999999843 33333333 78899999999999999999999999999 9999
Q ss_pred EeccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 285 FRKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 285 vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
+||++.+++.|+|+|+|+|.||+ ++.||.|++|+|| |++. +|+++|++|.+. ..|+++++|+|
T Consensus 131 IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~----TDiLlGlLKki~-----~~R~~LklIim 201 (674)
T KOG0922|consen 131 IRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLH----TDILLGLLKKIL-----KKRPDLKLIIM 201 (674)
T ss_pred EEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhH----HHHHHHHHHHHH-----hcCCCceEEEE
Confidence 99999999999999999999999 9999999999999 9999 999999999999 88999999999
Q ss_pred ecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHH
Q psy2470 357 SATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIG 436 (858)
Q Consensus 357 SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~ 436 (858)
|||+|+++|++||+ ++|++.|+||.|||++.|.+.+..||+++.+.++.+||.++++|+||||++|++||+.+++
T Consensus 202 SATlda~kfS~yF~-----~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~ 276 (674)
T KOG0922|consen 202 SATLDAEKFSEYFN-----NAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACE 276 (674)
T ss_pred eeeecHHHHHHHhc-----CCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHH
Confidence 99999999999999 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcc-CCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCC
Q psy2470 437 ILKQYHN-QREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTN 515 (858)
Q Consensus 437 ~L~~~~~-~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~ 515 (858)
.|.+... ..+.....++|+||.|+.++|.+||++.+.|.||||+||||||+|||||||.||||+|++|++.|||+.|++
T Consensus 277 ~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~ 356 (674)
T KOG0922|consen 277 LLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLD 356 (674)
T ss_pred HHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCcc
Confidence 9986522 111112278999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCHhhHHHhhcccCCCCCceEEEeh--hhHhhhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHHHHhhh
Q psy2470 516 SLVVVPISKASAVQRAGRAGRVRSGHVYRKN--FMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLEAG 593 (858)
Q Consensus 516 ~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~--~~~~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l~~~~ 593 (858)
.|...|||++++.||+|||||+|+|+||||| ++|+.|++ . ++ |||+|++|+ .
T Consensus 357 ~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~~~-----~---~~---PEI~R~~Ls---------------~ 410 (674)
T KOG0922|consen 357 SLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDKMPL-----Q---TV---PEIQRVNLS---------------S 410 (674)
T ss_pred ceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhhccc-----C---CC---CceeeechH---------------H
Confidence 9999999999999999999999999999999 89999998 7 77 999999999 9
Q ss_pred HhHhHhhhCCCCCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccce
Q psy2470 594 WCYDTKLIGITEPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYS 669 (858)
Q Consensus 594 ~~l~~~~~~~~~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~ 669 (858)
.+|+++++++.++.+|+|+++ ++..|++.|..+|++ + +++. +|. +.|..|+++|++|.++++
T Consensus 411 ~vL~Lkalgi~d~l~F~f~d~P~~~~l~~AL~~L~~lgal-----d-~~g~---lt~----p~G~~ma~~Pl~p~lsk~- 476 (674)
T KOG0922|consen 411 AVLQLKALGINDPLRFPFIDPPPPEALEEALEELYSLGAL-----D-DRGK---LTS----PLGRQMAELPLEPHLSKM- 476 (674)
T ss_pred HHHHHHhcCCCCcccCCCCCCCChHHHHHHHHHHHhcCcc-----c-CcCC---cCc----hHHhhhhhcCCCcchhhh-
Confidence 999999999999999999998 889999999999999 7 6666 772 399999999999999999
Q ss_pred eEeecccccccchhhHHHHHHHHHHhhhccccCCchhhHHHHhhcccCccccCCCChhhHHHHHHHHhccccCCCchhhH
Q psy2470 670 VIMLDEVHERTIFTDILMGLLKKILKDKERDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTL 749 (858)
Q Consensus 670 ~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~f~~~~gDhltl 749 (858)
++. +..++|..++++|+|+||++++|+.|.+.+.. +++..|++|.+.+|||+|+
T Consensus 477 -----------------------ll~--s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~-~a~~~~~kf~~~eGDh~tl 530 (674)
T KOG0922|consen 477 -----------------------LLK--SSELGCSEEILTIAAMLSVQSVFSRPKDKKAE-DADRKRAKFANPEGDHLTL 530 (674)
T ss_pred -----------------------hhh--ccccCCcchhhhheeeeeccceecCccchhhh-hhhHHHHhhcCcccCHHHH
Confidence 999 89999999999999999999999999888732 4888999999999999999
Q ss_pred HHHHHHHHHccchHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhcccccchhhccCCcEE
Q psy2470 750 LNIFKFYEKQENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNAAYLHYSGVYR 829 (858)
Q Consensus 750 Lnif~~w~~~~~~~~wC~~~~Ln~~~L~~a~~ir~QL~~~l~~~~~~~~~~~~~~~~i~k~l~aG~~~nvA~~~~~~~Y~ 829 (858)
||+|+.|.+++.+.+||++||+|++.|++|.+||+||.+++++.+++..+|..|.+.|+||||+|||.|+|+++.++.|+
T Consensus 531 L~vy~~~~~~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s~~~d~~~i~k~l~aGff~N~A~~~~~~~Yr 610 (674)
T KOG0922|consen 531 LNVYESWKENGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSSCGGDMEKIRKCLCAGFFRNVAERDYQDGYR 610 (674)
T ss_pred HHHHHHHHhcCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998444499
Q ss_pred eecCCceEEEcCCCCCCCCCCCCeEEecC
Q psy2470 830 TVRGNEDLYIHPSSVLYTLQQPQCTHLEG 858 (858)
Q Consensus 830 t~~~~~~v~iHPsS~L~~~~~P~wvvy~~ 858 (858)
|+.++++|+|||||+||.++ |+|||||.
T Consensus 611 ti~~~~~v~IHPSS~l~~~~-p~~viy~e 638 (674)
T KOG0922|consen 611 TIRGGQPVYIHPSSVLFRRK-PEWVIYHE 638 (674)
T ss_pred EccCCcEEEEechHHhhcCC-CCEEEEEE
Confidence 99999999999999999854 99999984
No 2
>KOG0924|consensus
Probab=100.00 E-value=5.1e-114 Score=947.94 Aligned_cols=552 Identities=33% Similarity=0.490 Sum_probs=518.5
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
+-|+|+|||||| +|+|++++.-. .++.. .+-|.+|+|+||+++|++|++|||..+|.+ |||
T Consensus 374 vvivgETGSGKT-------TQl~QyL~edG--------Y~~~G-mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~---VGY 434 (1042)
T KOG0924|consen 374 VVIVGETGSGKT-------TQLAQYLYEDG--------YADNG-MIGCTQPRRVAAISVAKRVAEEMGVTLGDT---VGY 434 (1042)
T ss_pred EEEEecCCCCch-------hhhHHHHHhcc--------cccCC-eeeecCchHHHHHHHHHHHHHHhCCccccc---cce
Confidence 557899999999 99999986533 33332 356789999999999999999999999999 999
Q ss_pred EEeccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
.+||++++++.|.|.|+|+|.||+ .+.|..|.+|+|| |+++ +|.++|++|++. ..|.++++|+
T Consensus 435 sIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslN----tDilfGllk~~l-----arRrdlKliV 505 (1042)
T KOG0924|consen 435 SIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLN----TDILFGLLKKVL-----ARRRDLKLIV 505 (1042)
T ss_pred EEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccc----hHHHHHHHHHHH-----HhhccceEEE
Confidence 999999999999999999999999 8899999999999 9999 999999999999 8888999999
Q ss_pred EecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHH
Q psy2470 356 SSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHII 435 (858)
Q Consensus 356 ~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~ 435 (858)
+||||++++|++||+ ++|.+.++||+|||++.|...+..||+++++...+.||...++|+||||++|+++|+-.+
T Consensus 506 tSATm~a~kf~nfFg-----n~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~ 580 (1042)
T KOG0924|consen 506 TSATMDAQKFSNFFG-----NCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTC 580 (1042)
T ss_pred eeccccHHHHHHHhC-----CCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHH
Confidence 999999999999999 799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-ccCCCC--cceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCC
Q psy2470 436 GILKQY-HNQRED--LKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNT 512 (858)
Q Consensus 436 ~~L~~~-~~~~~~--~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~ 512 (858)
..+... ...... .++.|+|+|+.||++-|.++|++.+.|.|||||||||||+|||||||.||||||+.|.+.|+++.
T Consensus 581 ~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~ 660 (1042)
T KOG0924|consen 581 DIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRI 660 (1042)
T ss_pred HHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeeccccc
Confidence 888732 222223 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeecCHhhHHHhhcccCCCCCceEEEeh--hhH-hhhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHHH
Q psy2470 513 LTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN--FMY-NRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYL 589 (858)
Q Consensus 513 g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~--~~~-~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l 589 (858)
|++.|+..|||++++.||+|||||+|+|.||||| ..| +.|.+ . +. |||+|+||+
T Consensus 661 G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~-----s---tv---PEIqRTNl~------------ 717 (1042)
T KOG0924|consen 661 GMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLP-----S---TV---PEIQRTNLS------------ 717 (1042)
T ss_pred ccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhccc-----C---CC---chhhhcchh------------
Confidence 9999999999999999999999999999999999 355 45555 5 77 999999999
Q ss_pred HhhhHhHhHhhhCCCCCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCccc
Q psy2470 590 LEAGWCYDTKLIGITEPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLL 665 (858)
Q Consensus 590 ~~~~~~l~~~~~~~~~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l 665 (858)
+++|+++++++.+...|+|+++ .+..++..|..+|++ + ..+. +| ++|+.|+++|+||.+
T Consensus 718 ---nvVLlLkslgV~dll~FdFmD~Pped~~~~sly~Lw~LGAl-----~-~~g~---LT-----~lG~~MvefpLDP~l 780 (1042)
T KOG0924|consen 718 ---NVVLLLKSLGVDDLLKFDFMDPPPEDNLLNSLYQLWTLGAL-----D-NTGQ---LT-----PLGRKMVEFPLDPPL 780 (1042)
T ss_pred ---hHHHHHHhcChhhhhCCCcCCCCHHHHHHHHHHHHHHhhcc-----c-cCCc---cc-----hhhHHhhhCCCCchH
Confidence 9999999999999999999998 788899999999999 6 5555 89 999999999999999
Q ss_pred ccceeEeecccccccchhhHHHHHHHHHHhhhccccCCchhhHHHHhhcccCccccCCCChhhHHHHHHHHhccccCCCc
Q psy2470 666 RKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGD 745 (858)
Q Consensus 666 ~~~~~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~f~~~~gD 745 (858)
++| +|. +..++|.+++++|++|||+..+|++|++.. ++++.+|.+|.+++||
T Consensus 781 sKm------------------------ll~--a~~~Gc~dEilsIvSmLSvp~VF~rpker~--eead~ar~Kf~~~~sD 832 (1042)
T KOG0924|consen 781 SKM------------------------LLM--AARMGCSDEILSIVSMLSVPAVFYRPKERE--EEADAAREKFQVPESD 832 (1042)
T ss_pred HHH------------------------HHH--HhccCcHHHHHHHHHHhcccceeeccccch--hhhhhHHhhhcCCCCc
Confidence 999 999 889999999999999999999999999888 8899999999999999
Q ss_pred hhhHHHHHHHHHHccchHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhcccccchhhccC
Q psy2470 746 LLTLLNIFKFYEKQENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNAAYLHYS 825 (858)
Q Consensus 746 hltlLnif~~w~~~~~~~~wC~~~~Ln~~~L~~a~~ir~QL~~~l~~~~~~~~~~~~~~~~i~k~l~aG~~~nvA~~~~~ 825 (858)
|+|+||+|++|.+++++..||++|||+.++|+.|+++|.||.++|+.+++++.++ .+|+.|+||||+|||.|+|++.+.
T Consensus 833 hLTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~-~dwdivrKCIcs~~fhn~Arlkg~ 911 (1042)
T KOG0924|consen 833 HLTLLNVFNQWRKNKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISS-DDWDIVRKCICSAYFHNAARLKGI 911 (1042)
T ss_pred hhhHHHHHHHHHhcCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccC-chHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred CcEEeecCCceEEEcCCCCCCCCCCCCeEEec
Q psy2470 826 GVYRTVRGNEDLYIHPSSVLYTLQQPQCTHLE 857 (858)
Q Consensus 826 ~~Y~t~~~~~~v~iHPsS~L~~~~~P~wvvy~ 857 (858)
|.|.+++++..|++||||+|++.-.|+|||||
T Consensus 912 g~YV~~~tg~~c~lHPsS~L~g~y~p~Yivyh 943 (1042)
T KOG0924|consen 912 GEYVNLSTGIPCHLHPSSVLHGLYTPDYIVYH 943 (1042)
T ss_pred ceEEEccCCcceeecchHhhhcCCCCCeeeeh
Confidence 99999999999999999999987789999998
No 3
>KOG0923|consensus
Probab=100.00 E-value=1.4e-112 Score=936.96 Aligned_cols=555 Identities=34% Similarity=0.533 Sum_probs=517.3
Q ss_pred cchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeee
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRG 282 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG 282 (858)
-+-|.|+|||||| +|+||+++.-.| .+....+-|.+|+|++|++||.|||+|||+++|.+ ||
T Consensus 282 VLiI~GeTGSGKT-------TQiPQyL~EaGy--------tk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~e---VG 343 (902)
T KOG0923|consen 282 VLIIVGETGSGKT-------TQIPQYLYEAGY--------TKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHE---VG 343 (902)
T ss_pred EEEEEcCCCCCcc-------ccccHHHHhccc--------ccCCceEeecCcchHHHHHHHHHHHHHhCcccccc---cc
Confidence 3557899999999 999999965443 22222367899999999999999999999999999 99
Q ss_pred EEEeccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEE
Q psy2470 283 YMFRKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLI 354 (858)
Q Consensus 283 ~~vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~i 354 (858)
|++||+++++..|.|.|||+|+||+ ++.+|+|.+|+|| |+|. +|.+.|++|++. +.||+++++
T Consensus 344 YsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~----TDILfgLvKDIa-----r~RpdLKll 414 (902)
T KOG0923|consen 344 YSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLH----TDILFGLVKDIA-----RFRPDLKLL 414 (902)
T ss_pred eEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhh----hhHHHHHHHHHH-----hhCCcceEE
Confidence 9999999999999999999999999 9999999999999 9999 999999999999 899999999
Q ss_pred EEecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHH
Q psy2470 355 ISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHI 434 (858)
Q Consensus 355 l~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l 434 (858)
++|||+|+++|+.||. ++|++.+||+.|||+++|...+..||+++++.++++||.+++.|+||||++|+++|+.+
T Consensus 415 IsSAT~DAekFS~fFD-----dapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~ 489 (902)
T KOG0923|consen 415 ISSATMDAEKFSAFFD-----DAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETV 489 (902)
T ss_pred eeccccCHHHHHHhcc-----CCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHH
Confidence 9999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-cCC-CCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCC
Q psy2470 435 IGILKQYH-NQR-EDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNT 512 (858)
Q Consensus 435 ~~~L~~~~-~~~-~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~ 512 (858)
.+.|.+.. .++ ..+.+.++|+|++||++.|.++|++.++|.||||+||||||+||||+||.||||+|++|+..|+|++
T Consensus 490 ~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprt 569 (902)
T KOG0923|consen 490 KENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRT 569 (902)
T ss_pred HHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCc
Confidence 99998432 222 2457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeecCHhhHHHhhcccCCCCCceEEEeh--hhHh-hhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHHH
Q psy2470 513 LTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN--FMYN-RLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYL 589 (858)
Q Consensus 513 g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~--~~~~-~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l 589 (858)
||++|...|||++++.||+|||||+|||+||||| ..|+ .+.. . +. |||+|+||.
T Consensus 570 GmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~-----~---t~---PEIqRtnL~------------ 626 (902)
T KOG0923|consen 570 GMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEE-----M---TV---PEIQRTNLG------------ 626 (902)
T ss_pred CceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhcc-----C---CC---cceeeccch------------
Confidence 9999999999999999999999999999999999 4453 3333 6 67 999999999
Q ss_pred HhhhHhHhHhhhCCCCCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCccc
Q psy2470 590 LEAGWCYDTKLIGITEPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLL 665 (858)
Q Consensus 590 ~~~~~~l~~~~~~~~~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l 665 (858)
+++|.++++|+++...|+|+++ ++..|++.|..||++ + ..+. +| .+|+.|+++|+||++
T Consensus 627 ---nvVL~LkSLGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGAL-----n-~~Ge---LT-----k~GrrMaEfP~dPml 689 (902)
T KOG0923|consen 627 ---NVVLLLKSLGIHDLIHFDFLDPPPTETLLKALEQLYALGAL-----N-HLGE---LT-----KLGRRMAEFPVDPML 689 (902)
T ss_pred ---hHHHHHHhcCcchhcccccCCCCChHHHHHHHHHHHHhhcc-----c-cccc---hh-----hhhhhhhhcCCCHHH
Confidence 9999999999999999999998 899999999999999 5 5555 89 999999999999999
Q ss_pred ccceeEeecccccccchhhHHHHHHHHHHhhhccccCCchhhHHHHhhcccC-ccccCCCChhhHHHHHHHHhccccCCC
Q psy2470 666 RKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDFECSDEIASILSLLQVQ-DIFIKPSSGALSLKARVLRRNFEVEQG 744 (858)
Q Consensus 666 ~~~~~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~~~~~i~a~l~~~-~~f~~~~~~~~~~~~~~~~~~f~~~~g 744 (858)
++| |+. +.+++|.++|++|+||||+. ++|+.|+++. ..++.+++.|....|
T Consensus 690 sKm------------------------i~a--s~ky~cs~EiitiaamlS~~~svfyrpk~~~--v~ad~a~~~f~~~~g 741 (902)
T KOG0923|consen 690 SKM------------------------IVA--SEKYKCSEEIITIAAMLSVGASVFYRPKDKQ--VHADNARKNFEEPVG 741 (902)
T ss_pred HhH------------------------Hhh--hccccchHHHHHHHHHHhcCchheecchhhh--hhhhhhhhccCCCCc
Confidence 999 998 88899999999999999985 6999998877 678888999999999
Q ss_pred chhhHHHHHHHHHHccchHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhcccccchhhcc
Q psy2470 745 DLLTLLNIFKFYEKQENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNAAYLHY 824 (858)
Q Consensus 745 DhltlLnif~~w~~~~~~~~wC~~~~Ln~~~L~~a~~ir~QL~~~l~~~~~~~~~~~~~~~~i~k~l~aG~~~nvA~~~~ 824 (858)
||+++|++|+.|.+.+.+.+||.+||+.+++|++|++||.||..++.+.++...++..+...|++|+.+|||+|+|+...
T Consensus 742 Dhi~~L~vyn~w~es~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~~~~~~~irk~i~aGff~h~a~l~~ 821 (902)
T KOG0923|consen 742 DHIVLLNVYNQWKESKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSNQNDLDKIRKAITAGFFYHTAKLSK 821 (902)
T ss_pred chhhhhHHHHHHhhcchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCChHHHHHHHHHHhccccccceeccC
Confidence 99999999999999999999999999999999999999999999999999988888778899999999999999999999
Q ss_pred CCcEEeecCCceEEEcCCCCCCCCCCCCeEEecC
Q psy2470 825 SGVYRTVRGNEDLYIHPSSVLYTLQQPQCTHLEG 858 (858)
Q Consensus 825 ~~~Y~t~~~~~~v~iHPsS~L~~~~~P~wvvy~~ 858 (858)
+|+|+++.+.+.|++||.|+||. ..|.|||||.
T Consensus 822 ~g~y~tvk~~~tv~~hp~S~l~~-~~P~wvvy~e 854 (902)
T KOG0923|consen 822 GGHYRTVKHPQTVSIHPNSGLFE-QLPRWVVYHE 854 (902)
T ss_pred CCcceeeccCcceeecCcccccc-cCCceEEEee
Confidence 99999999999999999999997 4679999983
No 4
>KOG0925|consensus
Probab=100.00 E-value=1.7e-107 Score=870.70 Aligned_cols=545 Identities=31% Similarity=0.501 Sum_probs=501.3
Q ss_pred ccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEe
Q psy2470 207 IGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFR 286 (858)
Q Consensus 207 ~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr 286 (858)
+|+|||||| +++|++... +.-... ..+.+.+|+|++|+|+|+|||+||++.+|.+ |||.++
T Consensus 68 vGetgsGKt-------tQiPq~~~~--~~~~~~-------~~v~CTQprrvaamsva~RVadEMDv~lG~E---VGysIr 128 (699)
T KOG0925|consen 68 VGETGSGKT-------TQIPQFVLE--YELSHL-------TGVACTQPRRVAAMSVAQRVADEMDVTLGEE---VGYSIR 128 (699)
T ss_pred EecCCCCcc-------ccCcHHHHH--HHHhhc-------cceeecCchHHHHHHHHHHHHHHhccccchh---cccccc
Confidence 699999999 999987532 221111 3478999999999999999999999999999 999999
Q ss_pred ccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEec
Q psy2470 287 KGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSA 358 (858)
Q Consensus 287 ~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SA 358 (858)
|+++.+.+|-+.|||+|+|++ .++|+.|.+|.|| |++. +|.++|++|++. ..|+++|+|+|||
T Consensus 129 fEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlA----TDiLmGllk~v~-----~~rpdLk~vvmSa 199 (699)
T KOG0925|consen 129 FEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLA----TDILMGLLKEVV-----RNRPDLKLVVMSA 199 (699)
T ss_pred ccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHH----HHHHHHHHHHHH-----hhCCCceEEEeec
Confidence 999999999999999999999 9999999999999 9999 999999999999 7889999999999
Q ss_pred ccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHH
Q psy2470 359 TVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGIL 438 (858)
Q Consensus 359 T~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L 438 (858)
|+++.+|.+||+ ++|++.|+| ++||+++|...+.+||++++++++++||..+++|+||||+++.+||+.+++.+
T Consensus 200 tl~a~Kfq~yf~-----n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i 273 (699)
T KOG0925|consen 200 TLDAEKFQRYFG-----NAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKI 273 (699)
T ss_pred ccchHHHHHHhC-----CCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHH
Confidence 999999999999 899999999 89999999999999999999999999999999999999999999999999999
Q ss_pred HH-hccCC-CCcceEEEeccCCCCHHHHHHhcCCCCCC-----cEEEEEecCcccccCCCCCeeEEEcCCCccceeccCC
Q psy2470 439 KQ-YHNQR-EDLKLLILPMHGSLPNNEQIKVFRPTPRA-----MRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPN 511 (858)
Q Consensus 439 ~~-~~~~~-~~~~~~v~~LHg~l~q~~r~~v~~~f~~g-----~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~ 511 (858)
.+ ..++. +...++|+||| +.+|.++|++.+.. .|||+|+||+||++++|++|.||||.|+.|+++||||
T Consensus 274 ~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPR 349 (699)
T KOG0925|consen 274 SREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPR 349 (699)
T ss_pred HHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcc
Confidence 83 32222 35578999999 77788999887643 4999999999999999999999999999999999999
Q ss_pred CCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh-hh-Hh-hhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHH
Q psy2470 512 TLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN-FM-YN-RLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQY 588 (858)
Q Consensus 512 ~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~-~~-~~-~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~ 588 (858)
++.+++...|||++++.||+|||||+.+|+||||| ++ |+ .|.+ . +. |||+|+||+
T Consensus 350 IRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~-----~---ty---peilrsNL~----------- 407 (699)
T KOG0925|consen 350 IRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQP-----Q---TY---PEILRSNLS----------- 407 (699)
T ss_pred eeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCC-----C---Cc---HHHHHHhhH-----------
Confidence 99999999999999999999999999999999999 44 43 4666 5 55 999999999
Q ss_pred HHhhhHhHhHhhhCCCCCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcc
Q psy2470 589 LLEAGWCYDTKLIGITEPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPL 664 (858)
Q Consensus 589 l~~~~~~l~~~~~~~~~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~ 664 (858)
+++|++|.+++.++..++|+++ ++..|+|.|..++++ + ++++ +| ++|..|+++|+||.
T Consensus 408 ----s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaL-----d-DdGn---LT-----~lG~imSEFPLdPq 469 (699)
T KOG0925|consen 408 ----STVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAAL-----D-DDGN---LT-----SLGEIMSEFPLDPQ 469 (699)
T ss_pred ----HHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhh-----C-CCcc---cc-----hhhhhhhcCCCChH
Confidence 9999999999999999999988 889999999999999 7 7777 89 99999999999999
Q ss_pred cccceeEeecccccccchhhHHHHHHHHHHhhhccccCCchhhHHHHhhcccCccccCCCChhhHHHHHHHHhccccCCC
Q psy2470 665 LRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQG 744 (858)
Q Consensus 665 l~~~~~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~f~~~~g 744 (858)
+++| ++. +++|.|+.++++|+|||++.++|++|.+.. ++.|+.+++.|+|..|
T Consensus 470 LAkm------------------------Li~--S~efnCsnEiLsisAMLsvPncFvRp~~~a-~kaAdeak~~faH~dG 522 (699)
T KOG0925|consen 470 LAKM------------------------LIG--SCEFNCSNEILSISAMLSVPNCFVRPTSSA-SKAADEAKETFAHIDG 522 (699)
T ss_pred HHHH------------------------Hhh--cCCCCchHHHHHHHhcccCCccccCCChhH-HHHHHHHHHHhccCCc
Confidence 9999 999 999999999999999999999999998433 2678888999999999
Q ss_pred chhhHHHHHHHHHHccchHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCC----CChHHHHHHHHhcccccch
Q psy2470 745 DLLTLLNIFKFYEKQENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSP----RNTNAVLKCLTNGFFSNAA 820 (858)
Q Consensus 745 DhltlLnif~~w~~~~~~~~wC~~~~Ln~~~L~~a~~ir~QL~~~l~~~~~~~~~~~----~~~~~i~k~l~aG~~~nvA 820 (858)
||+|+||+|.+|++++...+||++||||+++|+.|.++|.||.++|++++++..+.+ .+..+|+|||++|||+|||
T Consensus 523 DHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~F~S~~y~~nirKALvsgyFmqVA 602 (699)
T KOG0925|consen 523 DHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCSTDFGSRDYYVNIRKALVSGYFMQVA 602 (699)
T ss_pred chHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCCCCCChhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876533 4577999999999999999
Q ss_pred hhccCCcEEeecCCceEEEcCCCCCCCCCCCCeEEecC
Q psy2470 821 YLHYSGVYRTVRGNEDLYIHPSSVLYTLQQPQCTHLEG 858 (858)
Q Consensus 821 ~~~~~~~Y~t~~~~~~v~iHPsS~L~~~~~P~wvvy~~ 858 (858)
+...+|+|.|+++++.|++|||+||. .+|+||+||.
T Consensus 603 ~~~~~~~Ylt~kdnqvvqLhps~~l~--~~PeWVlyne 638 (699)
T KOG0925|consen 603 HLERGGHYLTVKDNQVVQLHPSTCLD--HKPEWVLYNE 638 (699)
T ss_pred hhccCCceEEEecCceEEeccccccC--CCCCeEEEee
Confidence 99888899999999999999999997 5899999984
No 5
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.5e-95 Score=888.34 Aligned_cols=546 Identities=26% Similarity=0.373 Sum_probs=484.5
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-+.|+|||||| +++|++.... |.|.. ..+.|.+|+|++|+++|+||++|++..+|.. |||.
T Consensus 93 iI~GeTGSGKT-------TqlPq~lle~--------g~g~~-g~I~~TQPRRlAArsLA~RVA~El~~~lG~~---VGY~ 153 (1294)
T PRK11131 93 IVAGETGSGKT-------TQLPKICLEL--------GRGVK-GLIGHTQPRRLAARTVANRIAEELETELGGC---VGYK 153 (1294)
T ss_pred EEECCCCCCHH-------HHHHHHHHHc--------CCCCC-CceeeCCCcHHHHHHHHHHHHHHHhhhhcce---ecee
Confidence 35699999999 7899776432 22221 2467889999999999999999999999999 9999
Q ss_pred EeccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 285 FRKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 285 vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
++++++.+..|+|+|||||+|++ ++.++.|++|++| |+++ +||++++++.+. ..++++|+|+|
T Consensus 154 vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn----~DfLLg~Lk~lL-----~~rpdlKvILm 224 (1294)
T PRK11131 154 VRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLN----IDFILGYLKELL-----PRRPDLKVIIT 224 (1294)
T ss_pred ecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccc----cchHHHHHHHhh-----hcCCCceEEEe
Confidence 99999999899999999999999 8888999999988 8999 999999998877 56689999999
Q ss_pred ecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCc------cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHH
Q psy2470 357 SATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPV------VNYVQGVVDTAIKIHESMPVGDILAFVIGLEQ 430 (858)
Q Consensus 357 SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~------~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~ 430 (858)
|||++.+.|+++|+ ++|++.++|+.+||+++|..... .+++...+..+..++ .+++|+||||+||+++
T Consensus 225 SATid~e~fs~~F~-----~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~E 298 (1294)
T PRK11131 225 SATIDPERFSRHFN-----NAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSGERE 298 (1294)
T ss_pred eCCCCHHHHHHHcC-----CCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHH
Confidence 99999999999998 68899999999999999987543 233444444444443 4567999999999999
Q ss_pred HHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccC
Q psy2470 431 IEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNP 510 (858)
Q Consensus 431 i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~ 510 (858)
|+.+++.|++.. .+.+.+++|||+|++++|.++|++ .|.+||||||||||||||||+|+||||+|++|.+.||+
T Consensus 299 Ie~lae~L~~~~----~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~ 372 (1294)
T PRK11131 299 IRDTADALNKLN----LRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSY 372 (1294)
T ss_pred HHHHHHHHHhcC----CCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccccc
Confidence 999999998651 124678999999999999999996 47899999999999999999999999999999999999
Q ss_pred CCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh--hhHhhhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHH
Q psy2470 511 NTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN--FMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQY 588 (858)
Q Consensus 511 ~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~--~~~~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~ 588 (858)
++|++.+...|+|+++|.||+|||||+++|+||+|| ++|+.+++ + +. |||+|++|.
T Consensus 373 ~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~~~-----~---~~---PEIlR~~L~----------- 430 (1294)
T PRK11131 373 RTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPE-----F---TD---PEILRTNLA----------- 430 (1294)
T ss_pred ccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhhhc-----c---cC---CccccCCHH-----------
Confidence 999999999999999999999999999999999999 77888888 7 77 999999999
Q ss_pred HHhhhHhHhHhhhCCCCCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCC--CcccCccceecchhhHHHhcccC
Q psy2470 589 LLEAGWCYDTKLIGITEPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDC--TTEDVTKIKYMTEGILMREMMTD 662 (858)
Q Consensus 589 l~~~~~~l~~~~~~~~~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~--~~~~~T~i~~~~~G~lls~L~~d 662 (858)
+++|+++++++.++..|+|+++ ++..|++.|..+|++ + +++ ....+| ++|+.|++||+|
T Consensus 431 ----~viL~lk~lgl~di~~F~fldpP~~~~i~~al~~L~~LgAl-----d-~~~~~~~~~LT-----~lG~~la~LPld 495 (1294)
T PRK11131 431 ----SVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAI-----T-TDEQASAYKLT-----PLGRQLAQLPVD 495 (1294)
T ss_pred ----HHHHHHHHcCCCCcceeeCCCCCCHHHHHHHHHHHHHCCCC-----C-ccccCCCccCc-----HHHHHHHhCCCC
Confidence 9999999999999999999987 899999999999999 5 221 122478 999999999999
Q ss_pred cccccceeEeecccccccchhhHHHHHHHHHHhhhccccCCchhhHHHHhhcccCccccCCCChhhHHHHHHHHhccccC
Q psy2470 663 PLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVE 742 (858)
Q Consensus 663 p~l~~~~~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~f~~~ 742 (858)
|.+++| ++. +..++|++++++|+|+||++++|..|.+++ .+++..|++|.+.
T Consensus 496 Prlakm------------------------Ll~--a~~~~c~~evl~IaA~Lsv~dpf~~p~~~~--~~a~~~~~~f~~~ 547 (1294)
T PRK11131 496 PRLARM------------------------VLE--AQKHGCVREVMIITSALSIQDPRERPMDKQ--QASDEKHRRFADK 547 (1294)
T ss_pred hHHHHH------------------------HHH--hhhcCCHHHHHHHHHHHcCCCcccCCchhH--HHHHHHHHhhCCC
Confidence 999999 998 889999999999999999999999998776 6788889999999
Q ss_pred CCchhhHHHHHHHHHHccc------hHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhccc
Q psy2470 743 QGDLLTLLNIFKFYEKQEN------KKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFF 816 (858)
Q Consensus 743 ~gDhltlLnif~~w~~~~~------~~~wC~~~~Ln~~~L~~a~~ir~QL~~~l~~~~~~~~~~~~~~~~i~k~l~aG~~ 816 (858)
.|||+++||+|+.|.+..+ .++||++||||+++|++|.++|.||.++++++|++.+++..+++.|++|||+|||
T Consensus 548 ~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~~~~~~~~~i~~all~G~~ 627 (1294)
T PRK11131 548 ESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHTALLTGLL 627 (1294)
T ss_pred CCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHHhhcH
Confidence 9999999999999976422 3689999999999999999999999999999999998888899999999999999
Q ss_pred ccchhhccCCc-EEeecCCceEEEcCCCCCCCCCCCCeEEec
Q psy2470 817 SNAAYLHYSGV-YRTVRGNEDLYIHPSSVLYTLQQPQCTHLE 857 (858)
Q Consensus 817 ~nvA~~~~~~~-Y~t~~~~~~v~iHPsS~L~~~~~P~wvvy~ 857 (858)
+|||+++.+++ |.+.+ +..++|||+|+|++ ++|+||||+
T Consensus 628 ~nva~~~~~~~~y~~~~-~~~~~ihP~S~L~~-~~p~wvv~~ 667 (1294)
T PRK11131 628 SHIGMKDAEKQEYTGAR-NARFSIFPGSGLFK-KPPKWVMVA 667 (1294)
T ss_pred HHHeeccCCCCeEEccC-CcEEEEcCCccccC-CCCCEEEEE
Confidence 99999887654 87776 78899999999997 589999997
No 6
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7.4e-92 Score=859.34 Aligned_cols=547 Identities=27% Similarity=0.380 Sum_probs=486.6
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-+.|+|||||| +++|++.... |.|. ...++|.+|+|++|.++|+++++++|..+|.. |||.
T Consensus 86 ii~g~TGSGKT-------TqlPq~lle~--------~~~~-~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~---VGY~ 146 (1283)
T TIGR01967 86 IIAGETGSGKT-------TQLPKICLEL--------GRGS-HGLIGHTQPRRLAARTVAQRIAEELGTPLGEK---VGYK 146 (1283)
T ss_pred EEeCCCCCCcH-------HHHHHHHHHc--------CCCC-CceEecCCccHHHHHHHHHHHHHHhCCCcceE---EeeE
Confidence 45799999999 8899887432 2222 22468899999999999999999999999999 9999
Q ss_pred EeccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 285 FRKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 285 vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
+|++++.+..|+|+|||||+|++ ++.|+.|++|++| |+++ +|+++++++.+. ..++++|+|+|
T Consensus 147 vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~----~D~LL~lLk~il-----~~rpdLKlIlm 217 (1283)
T TIGR01967 147 VRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLN----IDFLLGYLKQLL-----PRRPDLKIIIT 217 (1283)
T ss_pred EcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhcc----chhHHHHHHHHH-----hhCCCCeEEEE
Confidence 99999999999999999999999 8889999999988 8999 999999999887 66789999999
Q ss_pred ecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCc------cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHH
Q psy2470 357 SATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPV------VNYVQGVVDTAIKIHESMPVGDILAFVIGLEQ 430 (858)
Q Consensus 357 SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~------~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~ 430 (858)
|||++.+.|++||+ ++|++.++|+.|||+++|..... .++.+.....+..++.. .+|+||||+||+++
T Consensus 218 SATld~~~fa~~F~-----~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~-~~GdILVFLpg~~E 291 (1283)
T TIGR01967 218 SATIDPERFSRHFN-----NAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAE-GPGDILIFLPGERE 291 (1283)
T ss_pred eCCcCHHHHHHHhc-----CCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhh-CCCCEEEeCCCHHH
Confidence 99999999999998 68999999999999999976432 13444455555555543 57999999999999
Q ss_pred HHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccC
Q psy2470 431 IEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNP 510 (858)
Q Consensus 431 i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~ 510 (858)
|+.+++.|++.. .+++.+.+|||+|++++|.++|+++ +.+||||||||||||||||||+||||+|++|.++||+
T Consensus 292 I~~l~~~L~~~~----~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~ 365 (1283)
T TIGR01967 292 IRDAAEILRKRN----LRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSY 365 (1283)
T ss_pred HHHHHHHHHhcC----CCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccccccc
Confidence 999999998641 1367899999999999999999876 3589999999999999999999999999999999999
Q ss_pred CCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh--hhHhhhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHH
Q psy2470 511 NTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN--FMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQY 588 (858)
Q Consensus 511 ~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~--~~~~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~ 588 (858)
++|++.+.+.|||+++|.||+|||||+|+|+||+|| ++|+.+++ + +. |||+|++|+
T Consensus 366 ~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~~~-----~---~~---PEIlR~~L~----------- 423 (1283)
T TIGR01967 366 RTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNSRPE-----F---TD---PEILRTNLA----------- 423 (1283)
T ss_pred ccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhhhh-----c---cC---cccccccHH-----------
Confidence 999999999999999999999999999999999999 77888888 7 66 999999999
Q ss_pred HHhhhHhHhHhhhCCCCCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcc
Q psy2470 589 LLEAGWCYDTKLIGITEPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPL 664 (858)
Q Consensus 589 l~~~~~~l~~~~~~~~~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~ 664 (858)
+++|+++.+++.++..|+|+++ ++..|++.|..+|++ + +++....+| ++|+.|++||+||.
T Consensus 424 ----~viL~l~~lg~~di~~f~fldpP~~~~i~~A~~~L~~LGAl-----d-~~~~~~~LT-----~lGr~ma~LPldPr 488 (1283)
T TIGR01967 424 ----SVILQMLALRLGDIAAFPFIEAPDPRAIRDGFRLLEELGAL-----D-DDEAEPQLT-----PIGRQLAQLPVDPR 488 (1283)
T ss_pred ----HHHHHHHhcCCCCcccccCCCCCCHHHHHHHHHHHHHCCCC-----C-CCCCCcccc-----HHHHHHhhcCCChH
Confidence 9999999999999999999987 899999999999999 6 444212378 99999999999999
Q ss_pred cccceeEeecccccccchhhHHHHHHHHHHhhhccccCCchhhHHHHhhcccCccccCCCChhhHHHHHHHHhccccCCC
Q psy2470 665 LRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQG 744 (858)
Q Consensus 665 l~~~~~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~f~~~~g 744 (858)
+++| ++. +..++|.+++++|+|+|+++++|..|.+++ .+++..+++|.+..|
T Consensus 489 larm------------------------Ll~--a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~~--~~a~~~~~~f~~~~s 540 (1283)
T TIGR01967 489 LARM------------------------LLE--AHRLGCLQEVLIIASALSIQDPRERPMEKQ--QAADQAHARFKDPRS 540 (1283)
T ss_pred HHHH------------------------HHH--hhhcCCHHHHHHHHHHHcCCCcCCCcchhH--HHHHHHHHHhcCCCC
Confidence 9999 998 889999999999999999999999988776 778888999999999
Q ss_pred chhhHHHHHHHHHHcc------chHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhccccc
Q psy2470 745 DLLTLLNIFKFYEKQE------NKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSN 818 (858)
Q Consensus 745 DhltlLnif~~w~~~~------~~~~wC~~~~Ln~~~L~~a~~ir~QL~~~l~~~~~~~~~~~~~~~~i~k~l~aG~~~n 818 (858)
||++++|+|+.|.+.. ..++||++||||+.+|++|.++++||.++++++|++.+++..+.+.|++||++||++|
T Consensus 541 D~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~ 620 (1283)
T TIGR01967 541 DFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLNEEPADYDAIHKALLSGLLSQ 620 (1283)
T ss_pred CHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcCCCCccHHHHHHHHHHhhHHH
Confidence 9999999999997642 2368999999999999999999999999999999887776677888999999999999
Q ss_pred chhhccCCcEEeecCCceEEEcCCCCCCCCCCCCeEEecC
Q psy2470 819 AAYLHYSGVYRTVRGNEDLYIHPSSVLYTLQQPQCTHLEG 858 (858)
Q Consensus 819 vA~~~~~~~Y~t~~~~~~v~iHPsS~L~~~~~P~wvvy~~ 858 (858)
||++..++.|.+.. +..++|||+|+|++ ++|+||||+.
T Consensus 621 iA~~~~~~~y~~~~-g~~~~ihP~S~L~~-~~p~wvv~~e 658 (1283)
T TIGR01967 621 IGMKDEKHEYDGAR-GRKFHIFPGSPLFK-KPPKWVMAAE 658 (1283)
T ss_pred HheeCCCCcEEecC-CcEEEECCCccccC-CCCCEEEEee
Confidence 99988777899987 57899999999997 5789999974
No 7
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3e-90 Score=816.54 Aligned_cols=554 Identities=29% Similarity=0.391 Sum_probs=492.7
Q ss_pred cchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeee
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRG 282 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG 282 (858)
.+-+.|+|||||| +++|+++....+ +.. ..+.+++|+|++|+++|+|+++|+|.++|.. ||
T Consensus 67 vvii~getGsGKT-------TqlP~~lle~g~--------~~~-g~I~~tQPRRlAArsvA~RvAeel~~~~G~~---VG 127 (845)
T COG1643 67 VVIIVGETGSGKT-------TQLPQFLLEEGL--------GIA-GKIGCTQPRRLAARSVAERVAEELGEKLGET---VG 127 (845)
T ss_pred EEEEeCCCCCChH-------HHHHHHHHhhhc--------ccC-CeEEecCchHHHHHHHHHHHHHHhCCCcCce---ee
Confidence 4456799999999 999988865443 111 1368899999999999999999999999999 99
Q ss_pred EEEeccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEE
Q psy2470 283 YMFRKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLI 354 (858)
Q Consensus 283 ~~vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~i 354 (858)
|.+||++..+..|+|.|||+|.|++ ++.|+.|++|++| |+++ +|+++|+++++.. ..|+++|+|
T Consensus 128 Y~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~----tDilLgllk~~~~----~rr~DLKiI 199 (845)
T COG1643 128 YSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLN----TDILLGLLKDLLA----RRRDDLKLI 199 (845)
T ss_pred EEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHH----HHHHHHHHHHHHh----hcCCCceEE
Confidence 9999999999999999999999999 9999999999998 9999 9999999999772 445689999
Q ss_pred EEecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccch-HHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHH
Q psy2470 355 ISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNY-VQGVVDTAIKIHESMPVGDILAFVIGLEQIEH 433 (858)
Q Consensus 355 l~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~-~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~ 433 (858)
+||||+|.++|++||+ ++|++.++|++|||+++|.+....++ ++..+....+++..++.|+||||+||.+||+.
T Consensus 200 imSATld~~rfs~~f~-----~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~ 274 (845)
T COG1643 200 IMSATLDAERFSAYFG-----NAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIER 274 (845)
T ss_pred EEecccCHHHHHHHcC-----CCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHH
Confidence 9999999999999999 79999999999999999988888888 88888888899989999999999999999999
Q ss_pred HHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCC
Q psy2470 434 IIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTL 513 (858)
Q Consensus 434 l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g 513 (858)
+++.|++. .+ .+.+.++||||.|+.++|.++|++.+.|+||||+||||||+|||||||+||||+|+.|++.||+++|
T Consensus 275 ~~~~L~~~-~l--~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g 351 (845)
T COG1643 275 TAEWLEKA-EL--GDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTG 351 (845)
T ss_pred HHHHHHhc-cc--cCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccC
Confidence 99999972 11 1379999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeecCHhhHHHhhcccCCCCCceEEEeh--hhHhhhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHHHHh
Q psy2470 514 TNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN--FMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLE 591 (858)
Q Consensus 514 ~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~--~~~~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l~~ 591 (858)
+..|.+.|||++++.||+|||||+++|+||||| ++|..|++ + +. |||+|+||+
T Consensus 352 ~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~~-----~---t~---PEIlrtdLs-------------- 406 (845)
T COG1643 352 LTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLAFPE-----F---TL---PEILRTDLS-------------- 406 (845)
T ss_pred ceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHhccc-----C---CC---hhhhhcchH--------------
Confidence 999999999999999999999999999999999 68888888 7 77 999999999
Q ss_pred hhHhHhHhhhCCC-CCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccc
Q psy2470 592 AGWCYDTKLIGIT-EPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLR 666 (858)
Q Consensus 592 ~~~~l~~~~~~~~-~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~ 666 (858)
+++|+++.+|++ ++..|+|+++ ++..|++.|..+|++ + +++. +| ++|+.|+.||+||+++
T Consensus 407 -~~vL~l~~~G~~~d~~~f~fld~P~~~~i~~A~~~L~~LGAl-----d-~~g~---LT-----~lG~~ms~lpldprLA 471 (845)
T COG1643 407 -GLVLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGAL-----D-DSGK---LT-----PLGKQMSLLPLDPRLA 471 (845)
T ss_pred -HHHHHHHhcCCCCCcccCccCCCCChHHHHHHHHHHHHcCCc-----C-CCCC---CC-----HHHHHHHhCCCChHHH
Confidence 999999999996 9999999998 999999999999999 7 5555 88 9999999999999999
Q ss_pred cceeEeecccccccchhhHHHHHHHHHHhhhccccCCchhhHHHHhhcccCc---cccCCCChhhH-HHHHHHH-hcccc
Q psy2470 667 KYSVIMLDEVHERTIFTDILMGLLKKILKDKERDFECSDEIASILSLLQVQD---IFIKPSSGALS-LKARVLR-RNFEV 741 (858)
Q Consensus 667 ~~~~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~~~~~i~a~l~~~~---~f~~~~~~~~~-~~~~~~~-~~f~~ 741 (858)
+| ++. +..++|..++++|+|+|++++ .|+.+.+.+.. .....++ .++..
T Consensus 472 ~m------------------------Ll~--a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~ 525 (845)
T COG1643 472 RM------------------------LLT--APEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRN 525 (845)
T ss_pred HH------------------------HHh--ccccCcHHHHHHHHHhhccCCCcchhccccchhhHHHHHHHHHHHHhcc
Confidence 99 988 778999999999999999998 68877666531 1222222 33444
Q ss_pred ---CCCchhhHHHHHHHHHHcc------chHHHHHhccCCHHHHHHHHHHHHHHHHHHHh-cCCCCCCCCC---------
Q psy2470 742 ---EQGDLLTLLNIFKFYEKQE------NKKQFCHKYFFNYKVLKRAAELKNQMILLLKK-SSIPLVTSPR--------- 802 (858)
Q Consensus 742 ---~~gDhltlLnif~~w~~~~------~~~~wC~~~~Ln~~~L~~a~~ir~QL~~~l~~-~~~~~~~~~~--------- 802 (858)
+.|||++++++|..|...+ ....||+.++++.++|.++..++.|+...+.+ .+........
T Consensus 526 ~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (845)
T COG1643 526 AADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQH 605 (845)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchhhhcccCcchhhhhh
Confidence 6799999999999998877 56799999999999999999999999998887 5543322221
Q ss_pred ---------ChHHHHHHHHhcccccchhhccCCc-EEeecCCceEEEcCCCCCCCCCCCCeEEec
Q psy2470 803 ---------NTNAVLKCLTNGFFSNAAYLHYSGV-YRTVRGNEDLYIHPSSVLYTLQQPQCTHLE 857 (858)
Q Consensus 803 ---------~~~~i~k~l~aG~~~nvA~~~~~~~-Y~t~~~~~~v~iHPsS~L~~~~~P~wvvy~ 857 (858)
.|+.+.+++++|++.|+++....+. |.++.++..+++||+|+-.....++|++|+
T Consensus 606 ~~~~~~~~~~~d~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~ 670 (845)
T COG1643 606 LPEHCYSEPIWDDIRGALAAGRKLNIAQLQLDGRPYVTLSDNTPVFAHPSSVRLGLVLLEWIKYA 670 (845)
T ss_pred hhhhhccchhHHHHhhhhhhheecceeeeeccccccccCCCCceeEecchhHhhcccCcchHHHH
Confidence 3578999999999999999887776 999999999999999963334688999986
No 8
>KOG0926|consensus
Probab=100.00 E-value=4.2e-85 Score=729.92 Aligned_cols=563 Identities=25% Similarity=0.346 Sum_probs=485.0
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
+-|.|+|||||| +|+||++|..+|... +. .+ ...+=|.+|+|+||...|+||+.|+|. .|.+ |||
T Consensus 274 vIIcGeTGsGKT-------TQvPQFLYEAGf~s~-~~--~~-~gmIGITqPRRVAaiamAkRVa~EL~~-~~~e---VsY 338 (1172)
T KOG0926|consen 274 VIICGETGSGKT-------TQVPQFLYEAGFASE-QS--SS-PGMIGITQPRRVAAIAMAKRVAFELGV-LGSE---VSY 338 (1172)
T ss_pred EEEecCCCCCcc-------ccchHHHHHcccCCc-cC--CC-CCeeeecCchHHHHHHHHHHHHHHhcc-Cccc---eeE
Confidence 346899999999 999999987665432 11 11 123567999999999999999999998 9999 999
Q ss_pred EEeccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCC------C
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKR------T 349 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~------~ 349 (858)
++|++....+.|.|.|||+|.||+ +..|..|.+|++| |+++ +|.+.|++..+. .|+.... +
T Consensus 339 qIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvn----TDILiGmLSRiV-~LR~k~~ke~~~~k 413 (1172)
T KOG0926|consen 339 QIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVN----TDILIGMLSRIV-PLRQKYYKEQCQIK 413 (1172)
T ss_pred EEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccch----HHHHHHHHHHHH-HHHHHHhhhhcccC
Confidence 999999999999999999999999 9999999999999 9999 999999999887 3332222 3
Q ss_pred CceEEEEecccCHHHHHH---HhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcC
Q psy2470 350 QLKLIISSATVDAEEICQ---FYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVI 426 (858)
Q Consensus 350 ~~q~il~SAT~~~~~~~~---~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~ 426 (858)
.+++|+||||+-+..|.+ .|.. .||++.|+.|+|||.++|......||+..+.+..+.||+..|+|.||||++
T Consensus 414 pLKLIIMSATLRVsDFtenk~LFpi----~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvT 489 (1172)
T KOG0926|consen 414 PLKLIIMSATLRVSDFTENKRLFPI----PPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVT 489 (1172)
T ss_pred ceeEEEEeeeEEecccccCceecCC----CCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEe
Confidence 689999999998888873 3432 578999999999999999999989999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcc--CC------------C----------------------------------------------
Q psy2470 427 GLEQIEHIIGILKQYHN--QR------------E---------------------------------------------- 446 (858)
Q Consensus 427 t~~~i~~l~~~L~~~~~--~~------------~---------------------------------------------- 446 (858)
|+++|+.+++.|++... +. +
T Consensus 490 GQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~ 569 (1172)
T KOG0926|consen 490 GQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFN 569 (1172)
T ss_pred ChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhh
Confidence 99999999999985421 00 0
Q ss_pred --------------------------------CcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCe
Q psy2470 447 --------------------------------DLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGI 494 (858)
Q Consensus 447 --------------------------------~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V 494 (858)
...+.|+||||-|+.++|.+||+..+.|.|-+||||||||+|||||+|
T Consensus 570 ~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgI 649 (1172)
T KOG0926|consen 570 ALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGI 649 (1172)
T ss_pred ccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCe
Confidence 014679999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh--hhHh-hhhhhhhccCCCCCCCCCCCc
Q psy2470 495 VYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN--FMYN-RLFIHFCVSRNIPTIPNDPKD 571 (858)
Q Consensus 495 ~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~--~~~~-~l~~~~~~~~~~p~~~~~Pei 571 (858)
.||||||+.|++.||..+|++++...|||++++.||+|||||+|+|+||||| .-|+ .+.+ + +. |||
T Consensus 650 kYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~-----f---S~---PEI 718 (1172)
T KOG0926|consen 650 KYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEE-----F---SL---PEI 718 (1172)
T ss_pred eEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhh-----h---cc---HHH
Confidence 9999999999999999999999999999999999999999999999999999 5665 4555 6 66 999
Q ss_pred cccCcccchhhhHHHHHHHhhhHhHhHhhhCCCCCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCCCcccCccc
Q psy2470 572 VKCDVMFHKVFFSFFQYLLEAGWCYDTKLIGITEPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKI 647 (858)
Q Consensus 572 ~r~~L~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i 647 (858)
++.+.+ +++|+++++++.....|+|.++ +++.|+..|..||++ + +++. +|
T Consensus 719 lk~Pve---------------~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgAL-----d-~~g~---lT-- 772 (1172)
T KOG0926|consen 719 LKKPVE---------------SLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGAL-----D-SNGG---LT-- 772 (1172)
T ss_pred hhCcHH---------------HHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccc-----c-ccCC---cc--
Confidence 999999 9999999999999999999887 889999999999999 7 5555 88
Q ss_pred eecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHHhhhccccCCchhhHHHHhhcccCccccCCCCh-
Q psy2470 648 KYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDFECSDEIASILSLLQVQDIFIKPSSG- 726 (858)
Q Consensus 648 ~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~- 726 (858)
++|..|+.+|+.|+.++| |+. +...+|..-++.++++||+.++|+.....
T Consensus 773 ---~lGk~mS~FPlsPrfsKm------------------------L~~--~~Q~~~lpy~i~lvsaLsv~e~~i~~~~ll 823 (1172)
T KOG0926|consen 773 ---KLGKAMSLFPLSPRFSKM------------------------LAT--SDQHNLLPYNIALVSALSVYEVLIVAASLL 823 (1172)
T ss_pred ---cccchhcccccChhHHHH------------------------HHH--HHhhcchhHHHHHHHHHhccchhhhhhhcc
Confidence 999999999999999999 888 88889999999999999999887652211
Q ss_pred ----------hh-------------------HHHHHHHHhccccCCCchhhHHHHHHHHHHccchHHHHHhccCCHHHHH
Q psy2470 727 ----------AL-------------------SLKARVLRRNFEVEQGDLLTLLNIFKFYEKQENKKQFCHKYFFNYKVLK 777 (858)
Q Consensus 727 ----------~~-------------------~~~~~~~~~~f~~~~gDhltlLnif~~w~~~~~~~~wC~~~~Ln~~~L~ 777 (858)
.. +....+++.+|....+|-++++.+..++...++...||.+|||..++|.
T Consensus 824 ~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~sd~l~Ll~Av~a~ey~~~~~rfc~~ngLr~Kam~ 903 (1172)
T KOG0926|consen 824 PNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLDSDALVLLSAVSAAEYAENGMRFCEANGLRLKAME 903 (1172)
T ss_pred cccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhhhcchhHHhcchHHHHHH
Confidence 00 0112234666777789999999999999988888889999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC-------CCCCCC---CChHHHHHHHHhcccccchhhccCCcEEeecCCceEEEcCCCCCCC
Q psy2470 778 RAAELKNQMILLLKKSSI-------PLVTSP---RNTNAVLKCLTNGFFSNAAYLHYSGVYRTVRGNEDLYIHPSSVLYT 847 (858)
Q Consensus 778 ~a~~ir~QL~~~l~~~~~-------~~~~~~---~~~~~i~k~l~aG~~~nvA~~~~~~~Y~t~~~~~~v~iHPsS~L~~ 847 (858)
+++++|+||..+++..++ ...... .....+++.|||||..+||++..-..|-+..-+.+++|||+|+|++
T Consensus 904 Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~Ag~~DrVArk~~~~~y~~~~i~~~~fl~~~svl~~ 983 (1172)
T KOG0926|consen 904 EVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICAGFADRVARKVDATEYDAAKIQEPVFLHRWSVLIN 983 (1172)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHHHHHHHHHHhccccccchhhhcCceeeeehhhhhc
Confidence 999999999999986543 221111 1233577899999999999976666688888788999999999997
Q ss_pred CCCCCeEEec
Q psy2470 848 LQQPQCTHLE 857 (858)
Q Consensus 848 ~~~P~wvvy~ 857 (858)
+.|+||+|-
T Consensus 984 -~ape~viY~ 992 (1172)
T KOG0926|consen 984 -SAPELVIYQ 992 (1172)
T ss_pred -cCccceehh
Confidence 589999994
No 9
>KOG0920|consensus
Probab=100.00 E-value=1.3e-84 Score=763.87 Aligned_cols=554 Identities=26% Similarity=0.387 Sum_probs=477.7
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-|.|+||+||| +++||+...-.+ +.| ..+.++|.+|+|.+|.++|+||++|+|...|.. |||+
T Consensus 192 vIsGeTGcGKT-------TQvpQfiLd~~~----~~~---~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~---VGYq 254 (924)
T KOG0920|consen 192 VISGETGCGKT-------TQVPQFILDEAI----ESG---AACNIICTQPRRISAISVAERVAKERGESLGEE---VGYQ 254 (924)
T ss_pred EEeCCCCCCch-------hhhhHHHHHHHH----hcC---CCCeEEecCCchHHHHHHHHHHHHHhccccCCe---eeEE
Confidence 46799999999 999988743221 222 445689999999999999999999999999988 9999
Q ss_pred EeccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 285 FRKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 285 vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
+|.++..+..|.+.|||.|.||+ ++.++.+.++++| |+++ +||++.++|.+. ..+|++|+|||
T Consensus 255 vrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~----~DflLi~lk~lL-----~~~p~LkvILM 325 (924)
T KOG0920|consen 255 VRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSIN----TDFLLILLKDLL-----PRNPDLKVILM 325 (924)
T ss_pred EeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCC----cccHHHHHHHHh-----hhCCCceEEEe
Confidence 99999999889999999999999 8999999999988 9999 999999999998 78899999999
Q ss_pred ecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCc-----------------cc--------------hHHHH
Q psy2470 357 SATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPV-----------------VN--------------YVQGV 405 (858)
Q Consensus 357 SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~-----------------~~--------------~~~~~ 405 (858)
|||+|++.|++||+ ++|++.++|++|||..+|+++.. .+ ..+..
T Consensus 326 SAT~dae~fs~YF~-----~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li 400 (924)
T KOG0920|consen 326 SATLDAELFSDYFG-----GCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLI 400 (924)
T ss_pred eeecchHHHHHHhC-----CCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHH
Confidence 99999999999999 79999999999999988875321 01 01233
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcc
Q psy2470 406 VDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIA 485 (858)
Q Consensus 406 ~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvA 485 (858)
...+..|+.....|.||||+||.++|..+.+.|.....+.+...+.+.||||.|+..+|+.||+..+.|.||||+|||||
T Consensus 401 ~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIA 480 (924)
T KOG0920|consen 401 EDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIA 480 (924)
T ss_pred HHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhH
Confidence 45566677777789999999999999999999986544443356999999999999999999999999999999999999
Q ss_pred cccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh--hhHhhhhhhhhccCCCC
Q psy2470 486 ETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN--FMYNRLFIHFCVSRNIP 563 (858)
Q Consensus 486 ergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~--~~~~~l~~~~~~~~~~p 563 (858)
|+|||||||.||||+|+.|++.||+..+++.+...|+|++++.||+|||||..+|+||+|| ..|+.+.. ++
T Consensus 481 ETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~----~~--- 553 (924)
T KOG0920|consen 481 ETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLML----AY--- 553 (924)
T ss_pred hhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhhhccc----cc---
Confidence 9999999999999999999999999999999999999999999999999999999999999 66766544 25
Q ss_pred CCCCCCCccccCcccchhhhHHHHHHHhhhHhHhHhhhCCCCCccc--ccCCc----hHHHHHHHHHhcCCeeeeeeecC
Q psy2470 564 TIPNDPKDVKCDVMFHKVFFSFFQYLLEAGWCYDTKLIGITEPRRI--SVTSL----ANRVSEELRTTLGHTVGYTIRFD 637 (858)
Q Consensus 564 ~~~~~Pei~r~~L~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~--~~l~~----a~~~a~~~L~~lg~lv~y~v~~~ 637 (858)
.+ |||+|++|. ++||+.|.+....+..| -++++ ++..|++.|..+|++ + +
T Consensus 554 q~---PEilR~pL~---------------~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL-----~-~ 609 (924)
T KOG0920|consen 554 QL---PEILRTPLE---------------ELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGAL-----D-E 609 (924)
T ss_pred CC---hHHHhChHH---------------HhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccc-----c-C
Confidence 66 999999999 99999997776666543 12332 899999999999999 6 3
Q ss_pred CCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHHhhhccccCCchhhHHHHhhcccC
Q psy2470 638 DCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDFECSDEIASILSLLQVQ 717 (858)
Q Consensus 638 ~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~~~~~i~a~l~~~ 717 (858)
+. ++| ++|..++.||+||.++|+ ++. +..|+|++++++|||+|+..
T Consensus 610 ~e---~LT-----~LG~~la~lPvd~~igK~------------------------ll~--g~if~cLdp~l~iaa~Ls~k 655 (924)
T KOG0920|consen 610 SE---ELT-----PLGLHLASLPVDVRIGKL------------------------LLF--GAIFGCLDPALTIAAALSFK 655 (924)
T ss_pred cc---cch-----HHHHHHHhCCCccccchh------------------------hee--hhhccccchhhhHHHHhccC
Confidence 33 489 999999999999999999 999 99999999999999999999
Q ss_pred ccccCCCChhhHHHHHHHHhccccC-CCchhhHHHHHHHHHHccc-----hHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Q psy2470 718 DIFIKPSSGALSLKARVLRRNFEVE-QGDLLTLLNIFKFYEKQEN-----KKQFCHKYFFNYKVLKRAAELKNQMILLLK 791 (858)
Q Consensus 718 ~~f~~~~~~~~~~~~~~~~~~f~~~-~gDhltlLnif~~w~~~~~-----~~~wC~~~~Ln~~~L~~a~~ir~QL~~~l~ 791 (858)
+||+.|.+++ ..++++++.|... .|||++++++|+.|++... ..+||++|||+..+|+++.++|.|+.+.+.
T Consensus 656 ~PF~~~~~~~--~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~ 733 (924)
T KOG0920|consen 656 SPFVSPLGKR--EEADKAKKLLALDSISDHLAVVRAYAGWREILRSGPSAEKDFCEENFLSSNTLQEISSLRVQFLELLS 733 (924)
T ss_pred CCcccCCCch--hHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhh
Confidence 9999999988 7777788888754 5999999999999987643 478999999999999999999999999999
Q ss_pred hcCCCCC------------CCCCChHHHHHHHHhcccccchhhcc---CCc---EEeecCCceEEEcCCCCCCCCC--CC
Q psy2470 792 KSSIPLV------------TSPRNTNAVLKCLTNGFFSNAAYLHY---SGV---YRTVRGNEDLYIHPSSVLYTLQ--QP 851 (858)
Q Consensus 792 ~~~~~~~------------~~~~~~~~i~k~l~aG~~~nvA~~~~---~~~---Y~t~~~~~~v~iHPsS~L~~~~--~P 851 (858)
++|+-.. ..+.+++.++.+||+|||||+|+... ..+ |.+- ....++|||+|++++.. ..
T Consensus 734 ~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i~~~~~~~~~~~~~~~~~~-~~~~v~i~~~sv~~~~~~~~~ 812 (924)
T KOG0920|consen 734 DIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNIAFVRRMEPKSKSVTFVTK-ADGRVIIHPSSVNEQSTGFQS 812 (924)
T ss_pred hcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCceeeeecccCCcCcceeecC-CceeEEEecchhhccccccCC
Confidence 9986221 23357889999999999999998764 222 2222 23689999999998532 33
Q ss_pred CeEEec
Q psy2470 852 QCTHLE 857 (858)
Q Consensus 852 ~wvvy~ 857 (858)
+|++|+
T Consensus 813 p~l~~~ 818 (924)
T KOG0920|consen 813 PFLVFP 818 (924)
T ss_pred cceEEe
Confidence 599997
No 10
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=5.2e-72 Score=674.10 Aligned_cols=499 Identities=22% Similarity=0.273 Sum_probs=410.3
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
+-+.|+|||||| .++.+|.+. ... ...+++|++|||++|.|+++++++++|..+|.. |||
T Consensus 23 vvv~A~TGSGKT-----t~~pl~lL~-------~~~-----~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~---VGy 82 (812)
T PRK11664 23 VLLKAPTGAGKS-----TWLPLQLLQ-------HGG-----INGKIIMLEPRRLAARNVAQRLAEQLGEKPGET---VGY 82 (812)
T ss_pred EEEEcCCCCCHH-----HHHHHHHHH-------cCC-----cCCeEEEECChHHHHHHHHHHHHHHhCcccCce---EEE
Confidence 445799999999 333333221 111 112589999999999999999999999999999 999
Q ss_pred EEeccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
.+++++..+..++|+|+|||+|++ +..++.|++|++| |+++ +|+++++++++.+ ..++++|+++
T Consensus 83 ~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~----~Dl~L~ll~~i~~----~lr~~lqlil 154 (812)
T PRK11664 83 RMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQ----ADLALALLLDVQQ----GLRDDLKLLI 154 (812)
T ss_pred EecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccc----cchHHHHHHHHHH----hCCccceEEE
Confidence 999999888889999999999999 8889999999988 8999 9999999988762 3578899999
Q ss_pred EecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHH-HHHHHHhhCCCCCEEEEcCCHHHHHHH
Q psy2470 356 SSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVD-TAIKIHESMPVGDILAFVIGLEQIEHI 434 (858)
Q Consensus 356 ~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~-~l~~i~~~~~~g~iLVFl~t~~~i~~l 434 (858)
||||++.+.+++||. +++++.++|+.+||+++|......++.+..+. .+..++. +..|++|||+||+++|+.+
T Consensus 155 mSATl~~~~l~~~~~-----~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~~ei~~l 228 (812)
T PRK11664 155 MSATLDNDRLQQLLP-----DAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLR-QESGSLLLFLPGVGEIQRV 228 (812)
T ss_pred EecCCCHHHHHHhcC-----CCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHH-hCCCCEEEEcCCHHHHHHH
Confidence 999999999999987 68999999999999999987665555543332 3444433 3479999999999999999
Q ss_pred HHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCC
Q psy2470 435 IGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLT 514 (858)
Q Consensus 435 ~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~ 514 (858)
++.|++... .++.+.+|||+|++++|.++|++|++|++||||||||||||||||+|+||||+|++|.+.||++.|+
T Consensus 229 ~~~L~~~~~----~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~ 304 (812)
T PRK11664 229 QEQLASRVA----SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGL 304 (812)
T ss_pred HHHHHHhcc----CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCc
Confidence 999986311 2789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeecCHhhHHHhhcccCCCCCceEEEeh--hhHhhhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHHHHhh
Q psy2470 515 NSLVVVPISKASAVQRAGRAGRVRSGHVYRKN--FMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLEA 592 (858)
Q Consensus 515 ~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~--~~~~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l~~~ 592 (858)
+.|.+.|||+++|.||+|||||+++|+||||| ++|+.+++ + +. |||++++|+
T Consensus 305 ~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~l~~-----~---~~---PEI~r~dL~--------------- 358 (812)
T PRK11664 305 TRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAERAAA-----Q---SE---PEILHSDLS--------------- 358 (812)
T ss_pred ceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhhCcc-----C---CC---CceeccchH---------------
Confidence 99999999999999999999999999999999 77788888 7 77 999999999
Q ss_pred hHhHhHhhhCCCCCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccc
Q psy2470 593 GWCYDTKLIGITEPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKY 668 (858)
Q Consensus 593 ~~~l~~~~~~~~~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~ 668 (858)
+++|+++.+++.++..+.|+++ ++..|++.|..+|++ + +++. +| ++|+.|++||+||+++++
T Consensus 359 ~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~~~L~~lgal-----d-~~g~---lT-----~~G~~m~~lp~~Prla~~ 424 (812)
T PRK11664 359 GLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLLQQLGAL-----D-GQGR---LT-----ARGRKMAALGNDPRLAAM 424 (812)
T ss_pred HHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHHHHHHHCCCC-----C-CCCC---cC-----HHHHHHHhcCCchHHHHH
Confidence 9999999999999999999988 999999999999999 7 5555 89 999999999999999999
Q ss_pred eeEeecccccccchhhHHHHHHHHHHhhhccccCCch--hhHHHHhhcccCccccCCCChhhHHHHHHHHhccccCCCch
Q psy2470 669 SVIMLDEVHERTIFTDILMGLLKKILKDKERDFECSD--EIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDL 746 (858)
Q Consensus 669 ~~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~--~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~f~~~~gDh 746 (858)
++. +..++|.. .++.++|+|+..+. .. .+|.
T Consensus 425 ------------------------ll~--a~~~~~~~l~~a~~laall~e~~~-----~~----------------~~d~ 457 (812)
T PRK11664 425 ------------------------LVA--AKEDDEAALATAAKLAAILEEPPR-----SG----------------SSDL 457 (812)
T ss_pred ------------------------HHH--HHhcCchhhHHHHHHHHhhccCCC-----CC----------------cccH
Confidence 888 66677553 56667777765321 00 2343
Q ss_pred hhHHHHHHHHHHccchHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhcccccchhhccCC
Q psy2470 747 LTLLNIFKFYEKQENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNAAYLHYSG 826 (858)
Q Consensus 747 ltlLnif~~w~~~~~~~~wC~~~~Ln~~~L~~a~~ir~QL~~~l~~~~~~~~~~~~~~~~i~k~l~aG~~~nvA~~~~~~ 826 (858)
...++.+. ..|+ ..+.++.+|+... .+ + .+.+.+.++|++||+.+||++..++
T Consensus 458 ~~~l~~~~--------~~~~----------~~~~~~~~~~~~~---~~-~-----~~~~~~~~~la~aypdriA~~r~~~ 510 (812)
T PRK11664 458 GVALSRKQ--------PHWQ----------QRAQQLLKRLNVR---GG-E-----ADSSLIAPLLALAFPDRIARRRGQD 510 (812)
T ss_pred HHHHHHHH--------HHHH----------HHHHHHHHHHHhh---cc-c-----CChHHHHHHHHHHCHHHHhhhcCCC
Confidence 32332221 2353 3455555555331 11 1 1344588999999999999976555
Q ss_pred cEEeecCCceEEEcCCCCCCCCCCCCeEEec
Q psy2470 827 VYRTVRGNEDLYIHPSSVLYTLQQPQCTHLE 857 (858)
Q Consensus 827 ~Y~t~~~~~~v~iHPsS~L~~~~~P~wvvy~ 857 (858)
.|..+.++..+.+||+|.|++ .+|+++.
T Consensus 511 ~~~~l~~G~~a~l~~~~~l~~---~~~lv~a 538 (812)
T PRK11664 511 GRYQLANGMGAMLDADDALSR---HEWLIAP 538 (812)
T ss_pred CeEEeeCCCeEEECCCCcccC---CCeEEEE
Confidence 566777889999999999985 3899986
No 11
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=8e-72 Score=670.78 Aligned_cols=507 Identities=23% Similarity=0.269 Sum_probs=415.2
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-+.|+|||||| +++|...... . . ...+++|++|||++|.|+|+++++++|..+|.. |||.
T Consensus 21 Ii~a~TGSGKT-------T~vpl~lL~~--~---~-----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~---VGy~ 80 (819)
T TIGR01970 21 VLEAPPGAGKS-------TAVPLALLDA--P---G-----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQT---VGYR 80 (819)
T ss_pred EEECCCCCCHH-------HHHHHHHHHh--h---c-----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcE---EEEE
Confidence 35799999999 4444333211 1 0 123689999999999999999999999999999 9999
Q ss_pred EeccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 285 FRKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 285 vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
+++++..+..++|+|+|||+|++ +.+++.|++|++| |+++ +|+.+++++++.. ..++++|+|+|
T Consensus 81 vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~----~Dl~L~ll~~i~~----~lr~dlqlIlm 152 (819)
T TIGR01970 81 VRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLD----ADLGLALALDVQS----SLREDLKILAM 152 (819)
T ss_pred EccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhc----cchHHHHHHHHHH----hcCCCceEEEE
Confidence 99999888889999999999999 8888999999988 8999 9999999888762 34778999999
Q ss_pred ecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHH-HHHHHHHHhhCCCCCEEEEcCCHHHHHHHH
Q psy2470 357 SATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGV-VDTAIKIHESMPVGDILAFVIGLEQIEHII 435 (858)
Q Consensus 357 SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~-~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~ 435 (858)
|||++.+.|++||. +++++.++|+.|||+++|......++.... ...+..++.. ..|+||||+||+++|+.++
T Consensus 153 SATl~~~~l~~~l~-----~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~ 226 (819)
T TIGR01970 153 SATLDGERLSSLLP-----DAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQ 226 (819)
T ss_pred eCCCCHHHHHHHcC-----CCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHH
Confidence 99999999999997 689999999999999999876555444332 2344444433 4799999999999999999
Q ss_pred HHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCC
Q psy2470 436 GILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTN 515 (858)
Q Consensus 436 ~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~ 515 (858)
+.|++... +++.+.+|||+|++++|.++|++|++|++||||||||||||||||+|+||||+|++|.+.||+.+|++
T Consensus 227 ~~L~~~~~----~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~ 302 (819)
T TIGR01970 227 EQLAERLD----SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGIT 302 (819)
T ss_pred HHHHhhcC----CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCc
Confidence 99986311 37999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCHhhHHHhhcccCCCCCceEEEeh--hhHhhhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHHHHhhh
Q psy2470 516 SLVVVPISKASAVQRAGRAGRVRSGHVYRKN--FMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLEAG 593 (858)
Q Consensus 516 ~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~--~~~~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l~~~~ 593 (858)
.|.+.|||+++|.||+|||||+++|+||+|| ++|..|++ + +. |||++++|+ +
T Consensus 303 ~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~l~~-----~---~~---PEI~r~~L~---------------~ 356 (819)
T TIGR01970 303 RLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQRLPA-----Q---DE---PEILQADLS---------------G 356 (819)
T ss_pred eeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHhhhc-----C---CC---cceeccCcH---------------H
Confidence 9999999999999999999999999999999 77778888 7 67 999999999 9
Q ss_pred HhHhHhhhCCCCCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccce
Q psy2470 594 WCYDTKLIGITEPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYS 669 (858)
Q Consensus 594 ~~l~~~~~~~~~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~ 669 (858)
++|+++.+++.++..+.|+++ ++..|.+.|..+|++ + +++. +| ++|+.|++||+||++++|
T Consensus 357 ~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~~~L~~lgal-----d-~~~~---lT-----~~G~~~~~lp~~p~l~~~- 421 (819)
T TIGR01970 357 LALELAQWGAKDPSDLRWLDAPPSVALAAARQLLQRLGAL-----D-AQGR---LT-----AHGKAMAALGCHPRLAAM- 421 (819)
T ss_pred HHHHHHHcCCCChhhCCCCCCcCHHHHHHHHHHHHHCCCC-----C-CCCC---cC-----HHHHHHHhcCCCHHHHHH-
Confidence 999999999999999999987 899999999999999 6 5555 88 999999999999999999
Q ss_pred eEeecccccccchhhHHHHHHHHHHhhhccccCCchhhHHHHhhcccCccccCCCChhhHHHHHHHHhccccCCCchhhH
Q psy2470 670 VIMLDEVHERTIFTDILMGLLKKILKDKERDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTL 749 (858)
Q Consensus 670 ~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~f~~~~gDhltl 749 (858)
++. +..++|..+++.|+|+|+.++++.. ..+|....
T Consensus 422 -----------------------ll~--~~~~~~~~~~~~iaa~ls~~~~~~~-------------------~~~d~~~~ 457 (819)
T TIGR01970 422 -----------------------LLS--AHSTGLAALACDLAALLEERGLPRQ-------------------GGADLMNR 457 (819)
T ss_pred -----------------------HHH--hhhcCCHHHHHHHHHHHcCCCCCCC-------------------CcccHHHH
Confidence 998 8889999999999999999876421 13576555
Q ss_pred HHHHHHHHHccchHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCCChHHHHHHHHhcccccchhhccC-Cc
Q psy2470 750 LNIFKFYEKQENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIP-LVTSPRNTNAVLKCLTNGFFSNAAYLHYS-GV 827 (858)
Q Consensus 750 Lnif~~w~~~~~~~~wC~~~~Ln~~~L~~a~~ir~QL~~~l~~~~~~-~~~~~~~~~~i~k~l~aG~~~nvA~~~~~-~~ 827 (858)
+..++.. ....|+ .+.++.+|+...+ +.. ......+...+-.+++.+|..+||++..+ +.
T Consensus 458 ~~~~~~~-----~~~~~~----------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~lla~a~pdria~~r~~~~~ 519 (819)
T TIGR01970 458 LHRLQQG-----RQGRGQ----------RAQQLAKKLRRRL---RFSQADSGAIASHALGLLLALAFPDRIAKRRGQPGR 519 (819)
T ss_pred HHHHhhc-----chhhHH----------HHHHHHHHHHHHh---CcCcCCCcccccchHhHHHhhhChHhheeccCCCCe
Confidence 5555421 011222 2344445554432 211 00011111125668899999999987654 34
Q ss_pred EEeecCCceEEEcCCCCCCCCCCCCeEEe
Q psy2470 828 YRTVRGNEDLYIHPSSVLYTLQQPQCTHL 856 (858)
Q Consensus 828 Y~t~~~~~~v~iHPsS~L~~~~~P~wvvy 856 (858)
|. +.++..+.++|.|.|++. +|++-
T Consensus 520 y~-l~~G~~~~l~~~~~l~~~---~~l~~ 544 (819)
T TIGR01970 520 YQ-LANGRGAVLSAEDALARE---PWLVA 544 (819)
T ss_pred EE-CCCCCeeEeCCCCcccCC---CeEEE
Confidence 64 456688999999999864 79874
No 12
>KOG0330|consensus
Probab=100.00 E-value=1.4e-47 Score=402.74 Aligned_cols=306 Identities=14% Similarity=0.211 Sum_probs=237.4
Q ss_pred CCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCC
Q psy2470 165 SGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGD 244 (858)
Q Consensus 165 ~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~ 244 (858)
.+|...|...|+..|++.+. + ..|+|||||| .||.+|-+.. .++.++
T Consensus 82 ~~PT~IQ~~aiP~~L~g~dv--I------------------glAeTGSGKT-----~afaLPIl~~---LL~~p~----- 128 (476)
T KOG0330|consen 82 KKPTKIQSEAIPVALGGRDV--I------------------GLAETGSGKT-----GAFALPILQR---LLQEPK----- 128 (476)
T ss_pred CCCchhhhhhcchhhCCCcE--E------------------EEeccCCCch-----hhhHHHHHHH---HHcCCC-----
Confidence 34666677777777766432 1 3599999999 9999996653 233332
Q ss_pred CccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccce------eecceeEEEeecCcccc-CCCc--cCCC
Q psy2470 245 KARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRM------KILVSKIFKMSQGKPSD-SGVE--PISQ 315 (858)
Q Consensus 245 ~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~------~~~~t~I~v~TpGrLl~-~~~~--~~L~ 315 (858)
..++||++||||||.||++++ +.+|..+|.. +-..+++.++ ..+.+||+|||||||.+ +.+. ..|.
T Consensus 129 -~~~~lVLtPtRELA~QI~e~f-e~Lg~~iglr---~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le 203 (476)
T KOG0330|consen 129 -LFFALVLTPTRELAQQIAEQF-EALGSGIGLR---VAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLE 203 (476)
T ss_pred -CceEEEecCcHHHHHHHHHHH-HHhccccCeE---EEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHH
Confidence 257899999999999999877 6666666665 3333333332 33679999999999999 4433 3455
Q ss_pred ccc--EE----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCeec
Q psy2470 316 SYL--VE----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGHLY 387 (858)
Q Consensus 316 ~~~--vl----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~~ 387 (858)
++. |+ |.|| +||...+-+++. ..|+++|++|||||| .+.++..--.. +|..+.+..+..
T Consensus 204 ~lk~LVlDEADrlLd----~dF~~~ld~ILk-----~ip~erqt~LfsATMt~kv~kL~rasl~----~p~~v~~s~ky~ 270 (476)
T KOG0330|consen 204 QLKFLVLDEADRLLD----MDFEEELDYILK-----VIPRERQTFLFSATMTKKVRKLQRASLD----NPVKVAVSSKYQ 270 (476)
T ss_pred HhHHHhhchHHhhhh----hhhHHHHHHHHH-----hcCccceEEEEEeecchhhHHHHhhccC----CCeEEeccchhc
Confidence 444 44 9999 888777666665 778999999999999 67777754332 455566665543
Q ss_pred ---ceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHH
Q psy2470 388 ---PVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQ 464 (858)
Q Consensus 388 ---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r 464 (858)
.++++|...+..+.. ..+.++++....+.+|||++++...+.++-.|+.. |+.+.+|||+|+|+.|
T Consensus 271 tv~~lkQ~ylfv~~k~K~----~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~l-------g~~a~~LhGqmsq~~R 339 (476)
T KOG0330|consen 271 TVDHLKQTYLFVPGKDKD----TYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNL-------GFQAIPLHGQMSQSKR 339 (476)
T ss_pred chHHhhhheEeccccccc----hhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhc-------CcceecccchhhHHHH
Confidence 456777776665432 33555555556789999999999999999999988 9999999999999999
Q ss_pred HHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEE
Q psy2470 465 IKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVY 543 (858)
Q Consensus 465 ~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~ 543 (858)
.-+|+.|++|.+.||||||||+||+|||.|++||| || .|.+..+|+||+||+||+|. |+++
T Consensus 340 lg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN--------yD----------iP~~skDYIHRvGRtaRaGrsG~~I 401 (476)
T KOG0330|consen 340 LGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN--------YD----------IPTHSKDYIHRVGRTARAGRSGKAI 401 (476)
T ss_pred HHHHHHHhccCCcEEEecchhcccCCCCCceEEEe--------cC----------CCCcHHHHHHHcccccccCCCcceE
Confidence 99999999999999999999999999999999999 88 89999999999999999998 9999
Q ss_pred EehhhHh
Q psy2470 544 RKNFMYN 550 (858)
Q Consensus 544 rL~~~~~ 550 (858)
+|...|+
T Consensus 402 tlVtqyD 408 (476)
T KOG0330|consen 402 TLVTQYD 408 (476)
T ss_pred EEEehhh
Confidence 9994453
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=7.2e-46 Score=436.84 Aligned_cols=371 Identities=18% Similarity=0.182 Sum_probs=266.6
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccc----cCCCCC-CCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEe
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRY----IGQPEM-GVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEY 278 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~----l~~~~~-g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~ 278 (858)
+-+.|+|||||| .++|++++...+ +...+. .......+++|++|||+||.|++.++.+..|....
T Consensus 182 vIv~A~TGSGKT-------tqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg~~~~--- 251 (675)
T PHA02653 182 VVLTGGTGVGKT-------SQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLGFDEI--- 251 (675)
T ss_pred EEEECCCCCCch-------hHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhCcccc---
Confidence 455799999999 677766532211 111100 00112346899999999999999999887765211
Q ss_pred eeeeEEEecccee-------ecceeEEEeecCccccCCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhc
Q psy2470 279 ISRGYMFRKGRMK-------ILVSKIFKMSQGKPSDSGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLK 344 (858)
Q Consensus 279 ~~vG~~vr~~~~~-------~~~t~I~v~TpGrLl~~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~ 344 (858)
.++.+.++++... .+..+|+++|+|.. .+.|+++++| |+.+ +|+++++++++.
T Consensus 252 ~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~-----l~~L~~v~~VVIDEaHEr~~~----~DllL~llk~~~---- 318 (675)
T PHA02653 252 DGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT-----LNKLFDYGTVIIDEVHEHDQI----GDIIIAVARKHI---- 318 (675)
T ss_pred CCceEEEEECCcchHHhhcccCCCCEEEEeCccc-----ccccccCCEEEccccccCccc----hhHHHHHHHHhh----
Confidence 0122223333222 12457999998842 2457778777 7777 899999888654
Q ss_pred ccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCee-cceeEEEecCCc-----cchHHHHHHHHHHHHhh-
Q psy2470 345 PLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGHL-YPVSVYYSNDPV-----VNYVQGVVDTAIKIHES- 415 (858)
Q Consensus 345 ~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~-~~v~~~~~~~~~-----~~~~~~~~~~l~~i~~~- 415 (858)
+..+|+++||||+ +++.|++||. +++++.++|+. +||+++|..... .++.+.....+..++..
T Consensus 319 ---~~~rq~ILmSATl~~dv~~l~~~~~-----~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~ 390 (675)
T PHA02653 319 ---DKIRSLFLMTATLEDDRDRIKEFFP-----NPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKY 390 (675)
T ss_pred ---hhcCEEEEEccCCcHhHHHHHHHhc-----CCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHh
Confidence 2335999999999 5778988887 78999999985 999999986442 12222222223333322
Q ss_pred --CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCC-CCCcEEEEEecCcccccCCCC
Q psy2470 416 --MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPT-PRAMRKIVIATNIAETSITIP 492 (858)
Q Consensus 416 --~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f-~~g~~kVlvATdvAergldIp 492 (858)
..+|++|||+||+++|+.+++.|++.. +++.+.+|||+|+|.+ +++++| ++|++||||||||||||||||
T Consensus 391 ~~~~~g~iLVFlpg~~ei~~l~~~L~~~~-----~~~~v~~LHG~Lsq~e--q~l~~ff~~gk~kILVATdIAERGIDIp 463 (675)
T PHA02653 391 TPPKGSSGIVFVASVSQCEEYKKYLEKRL-----PIYDFYIIHGKVPNID--EILEKVYSSKNPSIIISTPYLESSVTIR 463 (675)
T ss_pred hcccCCcEEEEECcHHHHHHHHHHHHhhc-----CCceEEeccCCcCHHH--HHHHHHhccCceeEEeccChhhcccccc
Confidence 235799999999999999999998651 3689999999999974 344454 689999999999999999999
Q ss_pred CeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEehhhHhhhhhhhhccCCCCCCCCCCCcc
Q psy2470 493 GIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKNFMYNRLFIHFCVSRNIPTIPNDPKDV 572 (858)
Q Consensus 493 ~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~~~~~~l~~~~~~~~~~p~~~~~Pei~ 572 (858)
||++|||+|+++.+. +..|+ ..|+|+++|+||+|||||+++|.||+||.+.+ + . ++ +++.
T Consensus 464 ~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~-~-~---------pI---~ri~ 523 (675)
T PHA02653 464 NATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDL-L-K---------PI---KRID 523 (675)
T ss_pred CeeEEEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHH-h-H---------HH---HHHh
Confidence 999999999888763 44454 36999999999999999999999999992221 1 1 11 3333
Q ss_pred ccCcccchhhhHHHHHHHhhhHhHhHhhhCCCCCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCCCcccCccce
Q psy2470 573 KCDVMFHKVFFSFFQYLLEAGWCYDTKLIGITEPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIK 648 (858)
Q Consensus 573 r~~L~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~ 648 (858)
.++|+ +++|+++.|++..+..+ |+++ ++..|.+.|..+|+. + + . +|
T Consensus 524 ~~~L~---------------~~vL~lk~~g~~~~~~~-~ldpP~~~~l~~A~~~L~~lga~-----~-~--~---l~--- 573 (675)
T PHA02653 524 SEFLH---------------NYILYAKYFNLTLPEDL-FVIPSNLDRLRKTEEYIDSFNIS-----I-E--K---WY--- 573 (675)
T ss_pred HHHHH---------------HHHHHHHHcCCCCcccc-cCCCCCHHHHHHHHHHHHHcCCC-----c-h--h---hh---
Confidence 33477 88999999999655544 7776 899999999999987 4 2 2 67
Q ss_pred ecch--hhHHHhcccCcccccc
Q psy2470 649 YMTE--GILMREMMTDPLLRKY 668 (858)
Q Consensus 649 ~~~~--G~lls~L~~dp~l~~~ 668 (858)
.+ |+.++.+ ..+|+
T Consensus 574 --~l~~~~~~~~~----~~~k~ 589 (675)
T PHA02653 574 --EILSNYYVNML----EYAKI 589 (675)
T ss_pred --hhhccccHHHH----HHhHH
Confidence 66 8888888 56666
No 14
>KOG0331|consensus
Probab=100.00 E-value=3.6e-46 Score=417.37 Aligned_cols=319 Identities=14% Similarity=0.123 Sum_probs=233.7
Q ss_pred cccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCC
Q psy2470 160 CDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPE 239 (858)
Q Consensus 160 ~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~ 239 (858)
+....++|..+|.+...+.+-+.+- + .+|+|||||| +||++|.+.+.... +..
T Consensus 107 k~~g~~~PtpIQaq~wp~~l~GrD~--v------------------~iA~TGSGKT-----Lay~lP~i~~l~~~--~~~ 159 (519)
T KOG0331|consen 107 KEQGFEKPTPIQAQGWPIALSGRDL--V------------------GIARTGSGKT-----LAYLLPAIVHLNNE--QGK 159 (519)
T ss_pred HhcCCCCCchhhhcccceeccCCce--E------------------EEeccCCcch-----hhhhhHHHHHHHhc--ccc
Confidence 3445567888888888888877432 2 2699999999 99999977754332 222
Q ss_pred CCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCc----cEeeeeeEEEeccceeecceeEEEeecCcccc--CCCccC
Q psy2470 240 MGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMD----FEYISRGYMFRKGRMKILVSKIFKMSQGKPSD--SGVEPI 313 (858)
Q Consensus 240 ~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g----~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~--~~~~~~ 313 (858)
.+.++ .+.+||++||||||.|+.+.+ .+.+...+ ..|||+-++-+..+ ...+.+|+|+|||||+| ..+...
T Consensus 160 ~~~~~-~P~vLVL~PTRELA~QV~~~~-~~~~~~~~~~~~cvyGG~~~~~Q~~~-l~~gvdiviaTPGRl~d~le~g~~~ 236 (519)
T KOG0331|consen 160 LSRGD-GPIVLVLAPTRELAVQVQAEA-REFGKSLRLRSTCVYGGAPKGPQLRD-LERGVDVVIATPGRLIDLLEEGSLN 236 (519)
T ss_pred ccCCC-CCeEEEEcCcHHHHHHHHHHH-HHHcCCCCccEEEEeCCCCccHHHHH-HhcCCcEEEeCChHHHHHHHcCCcc
Confidence 22222 345899999999999996654 55554444 44555544433332 23568999999999999 345567
Q ss_pred CCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCe
Q psy2470 314 SQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGH 385 (858)
Q Consensus 314 L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~ 385 (858)
|++++++ |||+ ++|-..+.+++. +..++++|++++|||+ .++.|++-|.. ++..+.+-+.
T Consensus 237 l~~v~ylVLDEADrMld----mGFe~qI~~Il~----~i~~~~rQtlm~saTwp~~v~~lA~~fl~----~~~~i~ig~~ 304 (519)
T KOG0331|consen 237 LSRVTYLVLDEADRMLD----MGFEPQIRKILS----QIPRPDRQTLMFSATWPKEVRQLAEDFLN----NPIQINVGNK 304 (519)
T ss_pred ccceeEEEeccHHhhhc----cccHHHHHHHHH----hcCCCcccEEEEeeeccHHHHHHHHHHhc----CceEEEecch
Confidence 7776666 9999 666666666555 2336778999999999 67888887763 4444444333
Q ss_pred e-----cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCC
Q psy2470 386 L-----YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLP 460 (858)
Q Consensus 386 ~-----~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~ 460 (858)
. +.+.++-........ ..++..++..+.....|++||||.|+.+|++++..|++. ++.+.+|||+++
T Consensus 305 ~~~~a~~~i~qive~~~~~~K-~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~-------~~~a~~iHGd~s 376 (519)
T KOG0331|consen 305 KELKANHNIRQIVEVCDETAK-LRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK-------GWPAVAIHGDKS 376 (519)
T ss_pred hhhhhhcchhhhhhhcCHHHH-HHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc-------Ccceeeeccccc
Confidence 1 222222222121111 122223333333456789999999999999999999976 799999999999
Q ss_pred HHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-
Q psy2470 461 NNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS- 539 (858)
Q Consensus 461 q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~- 539 (858)
|.+|..+++.|++|+..||||||||+||||||+|++||| || .|-+.++|+||+|||||+|.
T Consensus 377 Q~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn--------yd----------fP~~vEdYVHRiGRTGRa~~~ 438 (519)
T KOG0331|consen 377 QSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN--------YD----------FPNNVEDYVHRIGRTGRAGKK 438 (519)
T ss_pred HHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe--------CC----------CCCCHHHHHhhcCccccCCCC
Confidence 999999999999999999999999999999999999999 88 78889999999999999887
Q ss_pred ceEEEeh
Q psy2470 540 GHVYRKN 546 (858)
Q Consensus 540 G~~~rL~ 546 (858)
|.+|.++
T Consensus 439 G~A~tff 445 (519)
T KOG0331|consen 439 GTAITFF 445 (519)
T ss_pred ceEEEEE
Confidence 9999999
No 15
>KOG0921|consensus
Probab=100.00 E-value=8.3e-45 Score=410.83 Aligned_cols=550 Identities=21% Similarity=0.287 Sum_probs=414.1
Q ss_pred hccccCCcchhhhhhhhcCcCcccccc-cccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQL-RYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l-~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
|.++||+||| +++-+.+ + .++.. +.|. .+-+.+..|||.-|+++|++|+++.+..+|.+ |||+
T Consensus 398 I~getgcgk~-------tq~aq~i--Le~~~~n---s~g~-~~na~v~qprrisaisiaerva~er~e~~g~t---vgy~ 461 (1282)
T KOG0921|consen 398 IKGETGCGKS-------TQVAQFL--LESFLEN---SNGA-SFNAVVSQPRRISAISLAERVANERGEEVGET---CGYN 461 (1282)
T ss_pred Eeecccccch-------hHHHHHH--HHHHhhc---cccc-cccceeccccccchHHHHHHHHHhhHHhhccc---cccc
Confidence 4699999999 4443332 2 22222 2221 23468899999999999999999999999999 9999
Q ss_pred Eeccceee-cceeEEEeecCccccCCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 285 FRKGRMKI-LVSKIFKMSQGKPSDSGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 285 vr~~~~~~-~~t~I~v~TpGrLl~~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
+|+++..+ ....|.+||-|.+++++.+... ..+++ |..+ +||++-+++.+. -.-+++.+++|
T Consensus 462 vRf~Sa~prpyg~i~fctvgvllr~~e~glr-g~sh~i~deiherdv~----~dfll~~lr~m~-----~ty~dl~v~lm 531 (1282)
T KOG0921|consen 462 VRFDSATPRPYGSIMFCTVGVLLRMMENGLR-GISHVIIDEIHERDVD----TDFVLIVLREMI-----STYRDLRVVLM 531 (1282)
T ss_pred ccccccccccccceeeeccchhhhhhhhccc-ccccccchhhhhhccc----hHHHHHHHHhhh-----ccchhhhhhhh
Confidence 99999887 3468999999999994444333 33333 8999 999999999998 67789999999
Q ss_pred ecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCc-------------------------cc-----------
Q psy2470 357 SATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPV-------------------------VN----------- 400 (858)
Q Consensus 357 SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~-------------------------~~----------- 400 (858)
|||+|.+.|..||. .+|.+.+.|+++|++.+|..... .+
T Consensus 532 satIdTd~f~~~f~-----~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~d 606 (1282)
T KOG0921|consen 532 SATIDTDLFTNFFS-----SIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCD 606 (1282)
T ss_pred hcccchhhhhhhhc-----cccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccC
Confidence 99999999999999 68888999999888765442100 00
Q ss_pred --hH----------------HHHHHHHH-HHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCH
Q psy2470 401 --YV----------------QGVVDTAI-KIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPN 461 (858)
Q Consensus 401 --~~----------------~~~~~~l~-~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q 461 (858)
+. -...+.+. .+....-+|-|+||+|++.++-.|+..|....-+.....+.++++|+.++-
T Consensus 607 d~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~ 686 (1282)
T KOG0921|consen 607 PSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTS 686 (1282)
T ss_pred hhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhccc
Confidence 00 00111222 222223368999999999999999999986655555668899999999999
Q ss_pred HHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCce
Q psy2470 462 NEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGH 541 (858)
Q Consensus 462 ~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~ 541 (858)
.+|.+||+..+.|..|+|++||+|++++||.++.+|||.+..+.+.|-..+.+..+.+.|.|+-+-+||.||+||..+|.
T Consensus 687 ~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~ 766 (1282)
T KOG0921|consen 687 QEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGF 766 (1282)
T ss_pred HhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccc
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred EEEeh--hhHhhhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHHHHhhhHhHhHhhhCC----------CCCccc
Q psy2470 542 VYRKN--FMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLEAGWCYDTKLIGI----------TEPRRI 609 (858)
Q Consensus 542 ~~rL~--~~~~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l~~~~~~l~~~~~~~----------~~~~~~ 609 (858)
||++. ..|+.+.+ + -. ||+.|.++. ...+..+.+.. -+|.-.
T Consensus 767 ~f~lcs~arF~~l~~-----~---~t---~em~r~plh---------------emalTikll~l~SI~~fl~kal~~~p~ 820 (1282)
T KOG0921|consen 767 CFHLCSRARFEALED-----H---GT---AEMFRTPLH---------------EIALTIKLLRLGSIGEFLGKALQPPPY 820 (1282)
T ss_pred cccccHHHHHHHHHh-----c---Cc---HhhhcCccH---------------HHHhhHHHHHhhhHHHHHhhccCCCch
Confidence 99999 66777766 5 45 899999988 33333222111 122222
Q ss_pred ccCCchHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHH
Q psy2470 610 SVTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGL 689 (858)
Q Consensus 610 ~~l~~a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~ 689 (858)
+ ++..+...+..++++ + .+.. +| ++|+.++++|+.|..+++
T Consensus 821 d----av~e~e~~l~~m~~l-----d-~n~e---lt-----~lg~~la~l~iep~~~k~--------------------- 861 (1282)
T KOG0921|consen 821 D----AVIEAEAVLREMGAL-----D-ANDE---LT-----PLGRMLARLPIEPRIGKM--------------------- 861 (1282)
T ss_pred h----hccCchHHHHHhhhh-----h-ccCc---cc-----chhhhhhhccCcccccce---------------------
Confidence 2 444455666677777 5 2222 68 999999999999999999
Q ss_pred HHHHHhhhccccCCchhhHHHHhhcccCccccCCCChhhH---HHHHHHHhccccC-CCchhhHHHHHHHHHHccchHHH
Q psy2470 690 LKKILKDKERDFECSDEIASILSLLQVQDIFIKPSSGALS---LKARVLRRNFEVE-QGDLLTLLNIFKFYEKQENKKQF 765 (858)
Q Consensus 690 l~~ll~~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~---~~~~~~~~~f~~~-~gDhltlLnif~~w~~~~~~~~w 765 (858)
++. +..++|...++.+|+..++..+|......... .+..-++++|++. ..||.+.+..|..|.-....++|
T Consensus 862 ---~~l--g~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~g~kfsdhva~~~v~q~~r~~~q~ga~~e~ef 936 (1282)
T KOG0921|consen 862 ---MIL--GTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAGNKFSDHVAIVSVIQGYREAVQMGAAAEREF 936 (1282)
T ss_pred ---eee--chhhccchhhhhhhcccccccccccccccccccccchhhccccccccchhhhhhhhhhHHHhhhhhhhhhhH
Confidence 777 77889999999999988887666542211100 0111124444432 46777777777777766667899
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHhcCCCCC----------CCCCChHHHHHHHHhcccccchhhccCCcEEeecCCc
Q psy2470 766 CHKYFFNYKVLKRAAELKNQMILLLKKSSIPLV----------TSPRNTNAVLKCLTNGFFSNAAYLHYSGVYRTVRGNE 835 (858)
Q Consensus 766 C~~~~Ln~~~L~~a~~ir~QL~~~l~~~~~~~~----------~~~~~~~~i~k~l~aG~~~nvA~~~~~~~Y~t~~~~~ 835 (858)
|.+.+++.+.|+.....|.|+..+|+.+++|-. .-+.+...++..||.++|||+|....+.+-.|... .
T Consensus 937 c~r~~l~~~~~~~t~~a~~ql~d~L~q~~fpe~~~~~~~v~~ng~d~~l~~~~~lL~~~lypn~~~y~ekrkvLtTe~-~ 1015 (1282)
T KOG0921|consen 937 CERYSLSNPVLKMTDGARRQLIDVLRQCSFPEDILFDISVNVNGPDRELNLMRSLLVMALYPNVAYYVEKRKVLTTEQ-S 1015 (1282)
T ss_pred hHhhhhcchhhhhhhhhHHHHHHHHHhccCccccccceeeccCCCCchhHHHHHHHHhhcCCccceeccceeEEeecc-h
Confidence 999999999999999999999999998876421 12223445677899999999998776655555544 4
Q ss_pred eEEEcCCCCCC--CCC----CCCeEEec
Q psy2470 836 DLYIHPSSVLY--TLQ----QPQCTHLE 857 (858)
Q Consensus 836 ~v~iHPsS~L~--~~~----~P~wvvy~ 857 (858)
...||-+|++. ..+ |-++.||.
T Consensus 1016 ~alihk~Svncp~S~qdM~fPsPFFVFG 1043 (1282)
T KOG0921|consen 1016 SALIHKYSVNCPNSRQEMDFPSPFFVFG 1043 (1282)
T ss_pred hhhhhhhcccCCCcccccCCCCceeeec
Confidence 56688887775 222 44888885
No 16
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-45 Score=422.71 Aligned_cols=319 Identities=18% Similarity=0.218 Sum_probs=248.0
Q ss_pred HhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCccccccc
Q psy2470 154 HRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLR 233 (858)
Q Consensus 154 ~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~ 233 (858)
..++.+.+..++.|...|...+...+.+. +.+ ..|||||||| +||.+|.+.....
T Consensus 39 ~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~--Dvi------------------~~A~TGsGKT-----~Af~lP~l~~l~~ 93 (513)
T COG0513 39 ELLQALKDLGFEEPTPIQLAAIPLILAGR--DVL------------------GQAQTGTGKT-----AAFLLPLLQKILK 93 (513)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhCCC--CEE------------------EECCCCChHH-----HHHHHHHHHHHhc
Confidence 44555666778889999999999998883 323 3599999999 9999997764211
Q ss_pred ccCCCCCCCCCCccCEEEccchHHHHHHHHHHH---HHHh-CCcCccEeeeeeEEEeccceeecceeEEEeecCcccc-C
Q psy2470 234 YIGQPEMGVGDKARPTIVRSSIDVACSCTVVEF---LTEM-GCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-S 308 (858)
Q Consensus 234 ~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v---~~e~-g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~-~ 308 (858)
. .. ... .++||++||||||.|+++.+ ++.. +.++...|||+++..+..... .+++|+|+|||||+| +
T Consensus 94 ~---~~---~~~-~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~-~~~~ivVaTPGRllD~i 165 (513)
T COG0513 94 S---VE---RKY-VSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK-RGVDIVVATPGRLLDLI 165 (513)
T ss_pred c---cc---cCC-CceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh-cCCCEEEECccHHHHHH
Confidence 1 11 111 12899999999999997755 3444 455566666666555543333 359999999999999 3
Q ss_pred -CCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcE
Q psy2470 309 -GVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATI 379 (858)
Q Consensus 309 -~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~ 379 (858)
.+...++++.++ |||+ ++|..++.+.+. ..++++|+++||||+ ++..+++.+.. +|..
T Consensus 166 ~~~~l~l~~v~~lVlDEADrmLd----~Gf~~~i~~I~~-----~~p~~~qtllfSAT~~~~i~~l~~~~l~----~p~~ 232 (513)
T COG0513 166 KRGKLDLSGVETLVLDEADRMLD----MGFIDDIEKILK-----ALPPDRQTLLFSATMPDDIRELARRYLN----DPVE 232 (513)
T ss_pred HcCCcchhhcCEEEeccHhhhhc----CCCHHHHHHHHH-----hCCcccEEEEEecCCCHHHHHHHHHHcc----CCcE
Confidence 334566766665 9999 666555555554 667799999999999 45566665553 5656
Q ss_pred EEecCe-----ecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEe
Q psy2470 380 LSVKGH-----LYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILP 454 (858)
Q Consensus 380 i~v~g~-----~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~ 454 (858)
+.+... ...++++|......+ .+...+..++.....+++|||++|+..++.++..|+.. |+.+..
T Consensus 233 i~v~~~~~~~~~~~i~q~~~~v~~~~---~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~-------g~~~~~ 302 (513)
T COG0513 233 IEVSVEKLERTLKKIKQFYLEVESEE---EKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR-------GFKVAA 302 (513)
T ss_pred EEEccccccccccCceEEEEEeCCHH---HHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC-------CCeEEE
Confidence 666521 245667766644322 47778888888877889999999999999999999987 899999
Q ss_pred ccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhccc
Q psy2470 455 MHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRA 534 (858)
Q Consensus 455 LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRa 534 (858)
|||+|+|++|.++++.|++|+.+||||||||+||||||+|++||| || .|.+.++|+||+|||
T Consensus 303 lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin--------yD----------~p~~~e~yvHRiGRT 364 (513)
T COG0513 303 LHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN--------YD----------LPLDPEDYVHRIGRT 364 (513)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEE--------cc----------CCCCHHHheeccCcc
Confidence 999999999999999999999999999999999999999999999 88 788999999999999
Q ss_pred CCCCC-ceEEEeh
Q psy2470 535 GRVRS-GHVYRKN 546 (858)
Q Consensus 535 GR~g~-G~~~rL~ 546 (858)
||+|. |.++.++
T Consensus 365 gRaG~~G~ai~fv 377 (513)
T COG0513 365 GRAGRKGVAISFV 377 (513)
T ss_pred ccCCCCCeEEEEe
Confidence 99998 9999999
No 17
>KOG0328|consensus
Probab=100.00 E-value=4.5e-44 Score=361.58 Aligned_cols=325 Identities=12% Similarity=0.187 Sum_probs=244.5
Q ss_pred HHhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccc
Q psy2470 153 LHRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQL 232 (858)
Q Consensus 153 ~~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l 232 (858)
.+.++|...+.+++|+..|...+...+++ +++++| ||.||||| ..|..
T Consensus 36 edlLrgiY~yGfekPS~IQqrAi~~IlkG--rdViaQ------------------aqSGTGKT------------a~~si 83 (400)
T KOG0328|consen 36 EDLLRGIYAYGFEKPSAIQQRAIPQILKG--RDVIAQ------------------AQSGTGKT------------ATFSI 83 (400)
T ss_pred HHHHHHHHHhccCCchHHHhhhhhhhhcc--cceEEE------------------ecCCCCce------------EEEEe
Confidence 47899999999999999999999999999 445544 99999999 44555
Q ss_pred cccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccE-eeeeeEEEecccee--ecceeEEEeecCccccCC
Q psy2470 233 RYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFE-YISRGYMFRKGRMK--ILVSKIFKMSQGKPSDSG 309 (858)
Q Consensus 233 ~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~-~~~vG~~vr~~~~~--~~~t~I~v~TpGrLl~~~ 309 (858)
..++..+.+ ....++||++||||||.|+-+.+ ..+|..++.. +.++|..--+++.+ .-+.|++.+||||++++.
T Consensus 84 ~vlq~~d~~--~r~tQ~lilsPTRELa~Qi~~vi-~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmi 160 (400)
T KOG0328|consen 84 SVLQSLDIS--VRETQALILSPTRELAVQIQKVI-LALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMI 160 (400)
T ss_pred eeeeecccc--cceeeEEEecChHHHHHHHHHHH-HHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHH
Confidence 555555544 33357899999999999996544 5555555544 11133211122211 146799999999999954
Q ss_pred CccCCCcccEEEecCCCCCchhh-hhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCee
Q psy2470 310 VEPISQSYLVELSILAPGGQDVI-GEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGHL 386 (858)
Q Consensus 310 ~~~~L~~~~vlR~l~~~~~~d~l-l~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~ 386 (858)
+...|. +.-+.||-.|++++++ .||-.++-+. ....+|+.|++++|||+ ++.+..++|.. +|..+.++...
T Consensus 161 kr~~L~-tr~vkmlVLDEaDemL~kgfk~Qiydi-yr~lp~~~Qvv~~SATlp~eilemt~kfmt----dpvrilvkrde 234 (400)
T KOG0328|consen 161 KRRSLR-TRAVKMLVLDEADEMLNKGFKEQIYDI-YRYLPPGAQVVLVSATLPHEILEMTEKFMT----DPVRILVKRDE 234 (400)
T ss_pred Hhcccc-ccceeEEEeccHHHHHHhhHHHHHHHH-HHhCCCCceEEEEeccCcHHHHHHHHHhcC----CceeEEEecCC
Confidence 444442 2223232222222222 3333333322 22678999999999999 45566677774 45555555433
Q ss_pred cc---eeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHH
Q psy2470 387 YP---VSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNE 463 (858)
Q Consensus 387 ~~---v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~ 463 (858)
-+ ++++|... +..+++.+++.++.....-.+.+|||+|++.++.+.+.++.. +|.|.++||+|+|+|
T Consensus 235 ltlEgIKqf~v~v---e~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~-------nftVssmHGDm~qkE 304 (400)
T KOG0328|consen 235 LTLEGIKQFFVAV---EKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA-------NFTVSSMHGDMEQKE 304 (400)
T ss_pred Cchhhhhhheeee---chhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhh-------CceeeeccCCcchhH
Confidence 33 45566553 344568899999988888889999999999999999999987 899999999999999
Q ss_pred HHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceE
Q psy2470 464 QIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHV 542 (858)
Q Consensus 464 r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~ 542 (858)
|.++++.|+.|+-+||++|||-+||+|+|.|++||| || .|..++.|+||+||+||.|+ |++
T Consensus 305 Rd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN--------YD----------LP~nre~YIHRIGRSGRFGRkGva 366 (400)
T KOG0328|consen 305 RDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN--------YD----------LPNNRELYIHRIGRSGRFGRKGVA 366 (400)
T ss_pred HHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe--------cC----------CCccHHHHhhhhccccccCCcceE
Confidence 999999999999999999999999999999999999 88 88999999999999999998 999
Q ss_pred EEeh
Q psy2470 543 YRKN 546 (858)
Q Consensus 543 ~rL~ 546 (858)
+.+.
T Consensus 367 inFV 370 (400)
T KOG0328|consen 367 INFV 370 (400)
T ss_pred EEEe
Confidence 9988
No 18
>KOG0333|consensus
Probab=100.00 E-value=3e-43 Score=381.30 Aligned_cols=293 Identities=16% Similarity=0.159 Sum_probs=219.8
Q ss_pred ccccCCcchhhhhhhhcCcCccccccccc--CCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 207 IGQPEMGPLLLRVRRALDFPDMPYQLRYI--GQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 207 ~a~TGSGKT~~~~~~a~~lP~~~~~l~~l--~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
+|+|||||| +||++|.+.|.-... ...+ -....+.++|++||||+|+||.++- ..+++..|...+.|-.+
T Consensus 288 vaETgsGkt-----aaf~ipLl~~IsslP~~~~~e--n~~~gpyaiilaptReLaqqIeeEt-~kf~~~lg~r~vsvigg 359 (673)
T KOG0333|consen 288 VAETGSGKT-----AAFLIPLLIWISSLPPMARLE--NNIEGPYAIILAPTRELAQQIEEET-NKFGKPLGIRTVSVIGG 359 (673)
T ss_pred EEeccCCcc-----ccchhhHHHHHHcCCCcchhh--hcccCceeeeechHHHHHHHHHHHH-HHhcccccceEEEEecc
Confidence 589999999 999999887764332 1111 1123356899999999999996543 33444444443333334
Q ss_pred Eeccce---eecceeEEEeecCcccc-C-CCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhc-ccCC----
Q psy2470 285 FRKGRM---KILVSKIFKMSQGKPSD-S-GVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLK-PLKR---- 348 (858)
Q Consensus 285 vr~~~~---~~~~t~I~v~TpGrLl~-~-~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~-~~~~---- 348 (858)
..++.+ .+.+++|++||||||+| + .....|++...+ ||+| ++|-..+.+++. ++- ....
T Consensus 360 ~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiD----mgfE~dv~~iL~-~mPssn~k~~td 434 (673)
T KOG0333|consen 360 LSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMID----MGFEPDVQKILE-QMPSSNAKPDTD 434 (673)
T ss_pred cchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhc----ccccHHHHHHHH-hCCccccCCCcc
Confidence 455544 45789999999999999 3 334456665555 9999 777777776665 221 0011
Q ss_pred --------------CC--ceEEEEeccc--CHHHHHH-HhhcccCCCCcEEEecCeecc---eeEEEecCCccchHHHHH
Q psy2470 349 --------------TQ--LKLIISSATV--DAEEICQ-FYNISASSNATILSVKGHLYP---VSVYYSNDPVVNYVQGVV 406 (858)
Q Consensus 349 --------------~~--~q~il~SAT~--~~~~~~~-~~~~~~~~~~~~i~v~g~~~~---v~~~~~~~~~~~~~~~~~ 406 (858)
.+ +|+++||||| .++.+++ ||. +|.++.+..-..| +++....... +.+.
T Consensus 435 e~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr-----~pv~vtig~~gk~~~rveQ~v~m~~e----d~k~ 505 (673)
T KOG0333|consen 435 EKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLR-----RPVVVTIGSAGKPTPRVEQKVEMVSE----DEKR 505 (673)
T ss_pred chhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhh-----CCeEEEeccCCCCccchheEEEEecc----hHHH
Confidence 11 8999999999 5677876 555 5767766532222 3333222221 2346
Q ss_pred HHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCccc
Q psy2470 407 DTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAE 486 (858)
Q Consensus 407 ~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAe 486 (858)
+.|..++.+....++|||+|+++.|+.+++.|.+. |+.+..|||+.+|++|..+++.|++|...|+||||||+
T Consensus 506 kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~-------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAg 578 (673)
T KOG0333|consen 506 KKLIEILESNFDPPIIIFVNTKKGADALAKILEKA-------GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAG 578 (673)
T ss_pred HHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc-------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 67778887776778999999999999999999988 99999999999999999999999999999999999999
Q ss_pred ccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 487 TSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 487 rgldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
||||||||++||| || ++-|.++|.||+|||||+|+ |++++++
T Consensus 579 RGIDIpnVSlVin--------yd----------maksieDYtHRIGRTgRAGk~GtaiSfl 621 (673)
T KOG0333|consen 579 RGIDIPNVSLVIN--------YD----------MAKSIEDYTHRIGRTGRAGKSGTAISFL 621 (673)
T ss_pred cCCCCCccceeee--------cc----------hhhhHHHHHHHhccccccccCceeEEEe
Confidence 9999999999999 77 67788999999999999998 9999999
No 19
>KOG0338|consensus
Probab=100.00 E-value=1.1e-42 Score=375.33 Aligned_cols=303 Identities=17% Similarity=0.171 Sum_probs=219.6
Q ss_pred HHHHHhcCCCCc-cccchh------------ccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccch
Q psy2470 189 LRVRRALDFPDM-PYQLRY------------IGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSI 255 (858)
Q Consensus 189 ~~~~~~~~~~~~-~~~~~~------------~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~Pt 255 (858)
++++-.+++..| |+|..- .|.|||||| +||.+|.+- +++..|.. ....++||+.||
T Consensus 193 Lka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKT-----AAF~lPiLE---RLlYrPk~---~~~TRVLVL~PT 261 (691)
T KOG0338|consen 193 LKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKT-----AAFALPILE---RLLYRPKK---VAATRVLVLVPT 261 (691)
T ss_pred HHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCch-----hhhHHHHHH---HHhcCccc---CcceeEEEEecc
Confidence 455555555555 555432 378999999 999999665 44555542 334468999999
Q ss_pred HHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccceee------cceeEEEeecCcccc-CCCcc--CCCcccEE------
Q psy2470 256 DVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKI------LVSKIFKMSQGKPSD-SGVEP--ISQSYLVE------ 320 (858)
Q Consensus 256 R~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~~~------~~t~I~v~TpGrLl~-~~~~~--~L~~~~vl------ 320 (858)
||||.|++. |.+.+..-+... ||..+++.+... ..++|+|+|||||+| +.+.+ .|+++.|+
T Consensus 262 RELaiQv~s-V~~qlaqFt~I~---~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 262 RELAIQVHS-VTKQLAQFTDIT---VGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD 337 (691)
T ss_pred HHHHHHHHH-HHHHHHhhccce---eeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH
Confidence 999999855 333333333333 555555544433 569999999999999 77665 56677777
Q ss_pred EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCeec---ceeEEEec
Q psy2470 321 LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGHLY---PVSVYYSN 395 (858)
Q Consensus 321 R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~~---~v~~~~~~ 395 (858)
|||+ ..|--.+-.++. .+++.+|++|||||| .++.+++.-.+ +|..+.+..... ...+.|..
T Consensus 338 RMLe----egFademnEii~-----lcpk~RQTmLFSATMteeVkdL~slSL~----kPvrifvd~~~~~a~~LtQEFiR 404 (691)
T KOG0338|consen 338 RMLE----EGFADEMNEIIR-----LCPKNRQTMLFSATMTEEVKDLASLSLN----KPVRIFVDPNKDTAPKLTQEFIR 404 (691)
T ss_pred HHHH----HHHHHHHHHHHH-----hccccccceeehhhhHHHHHHHHHhhcC----CCeEEEeCCccccchhhhHHHhe
Confidence 9999 555544444444 678899999999999 67777775442 455566654321 12222221
Q ss_pred C-CccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCC
Q psy2470 396 D-PVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRA 474 (858)
Q Consensus 396 ~-~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g 474 (858)
. +..+.. .-..+..++.......++||+.|++.+.++.-.|--. |+.+.-|||+|+|.+|..+++.|+++
T Consensus 405 IR~~re~d--Rea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLl-------gl~agElHGsLtQ~QRlesL~kFk~~ 475 (691)
T KOG0338|consen 405 IRPKREGD--REAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLL-------GLKAGELHGSLTQEQRLESLEKFKKE 475 (691)
T ss_pred eccccccc--cHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHh-------hchhhhhcccccHHHHHHHHHHHHhc
Confidence 1 111111 1112233333333567999999999999887666554 89999999999999999999999999
Q ss_pred cEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 475 MRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 475 ~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
++.||||||||+|||||++|..||| |+ +|.+.+.|+||+|||+|+|+ |.+++|.
T Consensus 476 eidvLiaTDvAsRGLDI~gV~tVIN--------y~----------mP~t~e~Y~HRVGRTARAGRaGrsVtlv 530 (691)
T KOG0338|consen 476 EIDVLIATDVASRGLDIEGVQTVIN--------YA----------MPKTIEHYLHRVGRTARAGRAGRSVTLV 530 (691)
T ss_pred cCCEEEEechhhccCCccceeEEEe--------cc----------CchhHHHHHHHhhhhhhcccCcceEEEe
Confidence 9999999999999999999999999 87 89999999999999999998 9999999
No 20
>KOG0923|consensus
Probab=100.00 E-value=5e-43 Score=387.28 Aligned_cols=137 Identities=37% Similarity=0.580 Sum_probs=126.6
Q ss_pred ccceeeccCHHHH-hccccCCCcccccCChhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccCCCcch
Q psy2470 41 SRKFSRLYTEASF-SQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVNGNLTK 119 (858)
Q Consensus 41 ~g~c~rLy~~~~~-~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~~lt~ 119 (858)
|||||||||...| ..+.+.++|||||+||+++||.||+|||+|+.+||||||||.++|.+|+++|+.|||||..|+||
T Consensus 596 PGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~~GeLT- 674 (902)
T KOG0923|consen 596 PGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFLDPPPTETLLKALEQLYALGALNHLGELT- 674 (902)
T ss_pred CCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhcccccCCCCChHHHHHHHHHHHHhhccccccchh-
Confidence 9999999999999 56999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCchhhhHHhhcccccch-----------HHHHHHHhhhhhcccccCCCCcccccccchh
Q psy2470 120 PVGETMAEMPLHPIHAKVLLSSGSVLDS-----------AVEILLHRLRGLCDNVDSGPETFHDHEMCFS 178 (858)
Q Consensus 120 ~lG~~ma~lp~~p~~~~~l~~s~s~~~~-----------~~~~~~~r~~~~~~~~~~~~~~f~~~e~~~~ 178 (858)
.+||+||+||+||++||||+.|+...|+ .-..+|+||.++.-.+|.+...|+++..++.
T Consensus 675 k~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~~~~gDhi 744 (902)
T KOG0923|consen 675 KLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFEEPVGDHI 744 (902)
T ss_pred hhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccCCCCcchh
Confidence 5999999999999999999999887643 2345789999999999998899998855554
No 21
>KOG0343|consensus
Probab=100.00 E-value=3.4e-42 Score=374.45 Aligned_cols=320 Identities=15% Similarity=0.197 Sum_probs=253.8
Q ss_pred HhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCccccccc
Q psy2470 154 HRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLR 233 (858)
Q Consensus 154 ~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~ 233 (858)
.-+.|+.++.+..+...|...|.++|.+.+. +. .|+|||||| +||++|.+....+
T Consensus 79 ~t~kgLke~~fv~~teiQ~~~Ip~aL~G~Dv--lG------------------AAkTGSGKT-----LAFlvPvlE~L~r 133 (758)
T KOG0343|consen 79 KTLKGLKEAKFVKMTEIQRDTIPMALQGHDV--LG------------------AAKTGSGKT-----LAFLVPVLEALYR 133 (758)
T ss_pred HHHHhHhhcCCccHHHHHHhhcchhccCccc--cc------------------ccccCCCce-----eeehHHHHHHHHH
Confidence 3467888888888889999999999999543 21 389999999 9999997765545
Q ss_pred ccCCCCCCCCCCccCEEEccchHHHHHHHHH---HHHHHhCCcCccEeeeeeE-EEeccceeecceeEEEeecCcccc-C
Q psy2470 234 YIGQPEMGVGDKARPTIVRSSIDVACSCTVV---EFLTEMGCRMDFEYISRGY-MFRKGRMKILVSKIFKMSQGKPSD-S 308 (858)
Q Consensus 234 ~l~~~~~g~g~~~~~~LVl~PtR~la~qva~---~v~~e~g~~~g~~~~~vG~-~vr~~~~~~~~t~I~v~TpGrLl~-~ 308 (858)
.-+.+.-|.| +||++||||||.|+.+ +|++..+...|.. +|. .+.++.......+|+||||||||+ +
T Consensus 134 ~kWs~~DGlG-----alIISPTRELA~QtFevL~kvgk~h~fSaGLi---iGG~~~k~E~eRi~~mNILVCTPGRLLQHm 205 (758)
T KOG0343|consen 134 LKWSPTDGLG-----ALIISPTRELALQTFEVLNKVGKHHDFSAGLI---IGGKDVKFELERISQMNILVCTPGRLLQHM 205 (758)
T ss_pred cCCCCCCCce-----eEEecchHHHHHHHHHHHHHHhhcccccccee---ecCchhHHHHHhhhcCCeEEechHHHHHHh
Confidence 4444444444 6999999999999976 4555666677777 442 234444444567999999999999 8
Q ss_pred CCccCCC--c--ccEE----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCc
Q psy2470 309 GVEPISQ--S--YLVE----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNAT 378 (858)
Q Consensus 309 ~~~~~L~--~--~~vl----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~ 378 (858)
..++.++ + +.|+ |+|| ++|--.+-.++. ..|+.+|++|||||- ++..+++.-.. +|.
T Consensus 206 de~~~f~t~~lQmLvLDEADR~LD----MGFk~tL~~Ii~-----~lP~~RQTLLFSATqt~svkdLaRLsL~----dP~ 272 (758)
T KOG0343|consen 206 DENPNFSTSNLQMLVLDEADRMLD----MGFKKTLNAIIE-----NLPKKRQTLLFSATQTKSVKDLARLSLK----DPV 272 (758)
T ss_pred hhcCCCCCCcceEEEeccHHHHHH----HhHHHHHHHHHH-----hCChhheeeeeecccchhHHHHHHhhcC----CCc
Confidence 8888776 3 3344 9999 554444444443 788999999999999 78888887553 666
Q ss_pred EEEecCee-----cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEE
Q psy2470 379 ILSVKGHL-----YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLIL 453 (858)
Q Consensus 379 ~i~v~g~~-----~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~ 453 (858)
.+.+.... ....++|...+. +.+++.++..+.++...++|||+.|+.++..+++.+.+. .||+++.
T Consensus 273 ~vsvhe~a~~atP~~L~Q~y~~v~l----~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl-----rpg~~l~ 343 (758)
T KOG0343|consen 273 YVSVHENAVAATPSNLQQSYVIVPL----EDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL-----RPGIPLL 343 (758)
T ss_pred EEEEeccccccChhhhhheEEEEeh----hhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhc-----CCCCcee
Confidence 67664221 234556655443 456778888888888889999999999999999999987 4699999
Q ss_pred eccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcc
Q psy2470 454 PMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGR 533 (858)
Q Consensus 454 ~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GR 533 (858)
.|||.|+|..|..+++.|-..+.-|++|||||+||||.|.|++||. || +|.+.++|+||+||
T Consensus 344 ~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ--------~D----------CPedv~tYIHRvGR 405 (758)
T KOG0343|consen 344 ALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ--------VD----------CPEDVDTYIHRVGR 405 (758)
T ss_pred eeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEE--------ec----------CchhHHHHHHHhhh
Confidence 9999999999999999998888899999999999999999999999 88 99999999999999
Q ss_pred cCCCCC-ceEEEeh
Q psy2470 534 AGRVRS-GHVYRKN 546 (858)
Q Consensus 534 aGR~g~-G~~~rL~ 546 (858)
++|.+. |.|+-+.
T Consensus 406 tAR~~~~G~sll~L 419 (758)
T KOG0343|consen 406 TARYKERGESLLML 419 (758)
T ss_pred hhcccCCCceEEEE
Confidence 999987 9999766
No 22
>KOG0922|consensus
Probab=100.00 E-value=1.1e-42 Score=390.26 Aligned_cols=135 Identities=46% Similarity=0.670 Sum_probs=129.3
Q ss_pred ccceeeccCHHHHhccccCCCcccccCChhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccCCCcchH
Q psy2470 41 SRKFSRLYTEASFSQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVNGNLTKP 120 (858)
Q Consensus 41 ~g~c~rLy~~~~~~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~~lt~~ 120 (858)
||||||||||++|+.|++.++|||+|+||++++|+||+||++|+.+|||+||||++++..|++.|+.+||||++|+||+|
T Consensus 380 pGkcyRLYte~~~~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d~P~~~~l~~AL~~L~~lgald~~g~lt~p 459 (674)
T KOG0922|consen 380 PGKCYRLYTESAYDKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRFPFIDPPPPEALEEALEELYSLGALDDRGKLTSP 459 (674)
T ss_pred CceEEEeeeHHHHhhcccCCCCceeeechHHHHHHHHhcCCCCcccCCCCCCCChHHHHHHHHHHHhcCcccCcCCcCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhhhhcCCCCchhhhHHhhccccc----------chHHHHHHHhhhhhccc-ccCCCCccccccc
Q psy2470 121 VGETMAEMPLHPIHAKVLLSSGSVL----------DSAVEILLHRLRGLCDN-VDSGPETFHDHEM 175 (858)
Q Consensus 121 lG~~ma~lp~~p~~~~~l~~s~s~~----------~~~~~~~~~r~~~~~~~-~~~~~~~f~~~e~ 175 (858)
+|++||+||++|.++|||+.|.+++ ++++++.|.||.+.++. ++.++.+|...|=
T Consensus 460 ~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~~~eG 525 (674)
T KOG0922|consen 460 LGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSRPKDKKAEDADRKRAKFANPEG 525 (674)
T ss_pred HHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceecCccchhhhhhhHHHHhhcCccc
Confidence 9999999999999999999999986 46699999999999999 8888888887765
No 23
>KOG0342|consensus
Probab=100.00 E-value=8e-41 Score=361.74 Aligned_cols=308 Identities=15% Similarity=0.180 Sum_probs=226.6
Q ss_pred hhHHHHHHHhcCCCCc-cccchh------------ccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEE
Q psy2470 185 QPLLLRVRRALDFPDM-PYQLRY------------IGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIV 251 (858)
Q Consensus 185 ~~~~~~~~~~~~~~~~-~~~~~~------------~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LV 251 (858)
.+...++-..|++..| |+|.+. .|+|||||| .||++|.+.+.+...-.+. ....++|
T Consensus 90 S~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKT-----lAFLiPaie~l~k~~~~~r-----~~~~vlI 159 (543)
T KOG0342|consen 90 SPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKT-----LAFLLPAIELLRKLKFKPR-----NGTGVLI 159 (543)
T ss_pred CHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCce-----eeehhHHHHHHHhcccCCC-----CCeeEEE
Confidence 4566677777777777 776553 489999999 9999998887654322222 2234799
Q ss_pred ccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccceee------cceeEEEeecCcccc-CCCccCC----CcccEE
Q psy2470 252 RSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKI------LVSKIFKMSQGKPSD-SGVEPIS----QSYLVE 320 (858)
Q Consensus 252 l~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~~~------~~t~I~v~TpGrLl~-~~~~~~L----~~~~vl 320 (858)
++||||||.|++..+-+.+...-+.. ||+.+++.+... ++++|+|||||||+| +++.+.+ .++.|+
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~---v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvl 236 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESIT---VGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVL 236 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcc---eEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEe
Confidence 99999999999776544333222334 555555444322 468999999999999 6665431 245566
Q ss_pred ----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCee-----cce
Q psy2470 321 ----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGHL-----YPV 389 (858)
Q Consensus 321 ----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~-----~~v 389 (858)
|.|+ ++|-.++.+++. ..+..+|+++||||+ .++.++.--.. +++..+.+.... ..+
T Consensus 237 DEADrlLd----~GF~~di~~Ii~-----~lpk~rqt~LFSAT~~~kV~~l~~~~L~---~d~~~v~~~d~~~~~The~l 304 (543)
T KOG0342|consen 237 DEADRLLD----IGFEEDVEQIIK-----ILPKQRQTLLFSATQPSKVKDLARGALK---RDPVFVNVDDGGERETHERL 304 (543)
T ss_pred ecchhhhh----cccHHHHHHHHH-----hccccceeeEeeCCCcHHHHHHHHHhhc---CCceEeecCCCCCcchhhcc
Confidence 9999 555555544444 677899999999999 56677765442 134444443222 224
Q ss_pred eEEEecCCccchHHHHHHHHHHHHhhCCC-CCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhc
Q psy2470 390 SVYYSNDPVVNYVQGVVDTAIKIHESMPV-GDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVF 468 (858)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~~i~~~~~~-g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~ 468 (858)
++-|...+.... +..+..+++.... .+|+||++|+..+..+++.|+.. ++.|..+||+++|..|..++
T Consensus 305 ~Qgyvv~~~~~~----f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~-------dlpv~eiHgk~~Q~kRT~~~ 373 (543)
T KOG0342|consen 305 EQGYVVAPSDSR----FSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYI-------DLPVLEIHGKQKQNKRTSTF 373 (543)
T ss_pred cceEEeccccch----HHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhc-------CCchhhhhcCCcccccchHH
Confidence 444554443332 3334444443333 78999999999999999999977 89999999999999999999
Q ss_pred CCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 469 RPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 469 ~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
..|++.+.-|||||||||||+|||+|++||. || .|.++++|+||+|||||.|. |.++-+.
T Consensus 374 ~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ--------~~----------~P~d~~~YIHRvGRTaR~gk~G~alL~l 434 (543)
T KOG0342|consen 374 FEFCKAESGILVCTDVAARGLDIPDVDWVVQ--------YD----------PPSDPEQYIHRVGRTAREGKEGKALLLL 434 (543)
T ss_pred HHHhhcccceEEecchhhccCCCCCceEEEE--------eC----------CCCCHHHHHHHhccccccCCCceEEEEe
Confidence 9999999999999999999999999999999 77 68889999999999999987 9999776
No 24
>KOG0345|consensus
Probab=100.00 E-value=1.3e-40 Score=357.48 Aligned_cols=330 Identities=18% Similarity=0.173 Sum_probs=236.9
Q ss_pred hHHHHHHHhcCCCCc-cccch------------hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEc
Q psy2470 186 PLLLRVRRALDFPDM-PYQLR------------YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVR 252 (858)
Q Consensus 186 ~~~~~~~~~~~~~~~-~~~~~------------~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl 252 (858)
++...+-+.++++.| |.|.. +-|.|||||| +||++|.+-...+ ...+.-.+ ...+||+
T Consensus 15 ~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKT-----lAFllP~le~i~r--r~~~~~~~--~vgalII 85 (567)
T KOG0345|consen 15 PWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKT-----LAFLLPMLEIIYR--REAKTPPG--QVGALII 85 (567)
T ss_pred HHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCch-----hhHHHHHHHHHHh--hccCCCcc--ceeEEEe
Confidence 444556677777777 77754 3489999999 8888886653222 11111111 2457999
Q ss_pred cchHHHHHHHHHH---HHHH-hCCcCccEeeeeeEEEecccee---ecceeEEEeecCcccc-CCCc-cCCC--cccEE-
Q psy2470 253 SSIDVACSCTVVE---FLTE-MGCRMDFEYISRGYMFRKGRMK---ILVSKIFKMSQGKPSD-SGVE-PISQ--SYLVE- 320 (858)
Q Consensus 253 ~PtR~la~qva~~---v~~e-~g~~~g~~~~~vG~~vr~~~~~---~~~t~I~v~TpGrLl~-~~~~-~~L~--~~~vl- 320 (858)
+||||||.||.+. +.+. ...+.... ||...-.++.. .++++|+|||||||+| ++.. ..++ +.+++
T Consensus 86 sPTRELa~QI~~V~~~F~~~l~~l~~~l~---vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LV 162 (567)
T KOG0345|consen 86 SPTRELARQIREVAQPFLEHLPNLNCELL---VGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILV 162 (567)
T ss_pred cCcHHHHHHHHHHHHHHHHhhhccceEEE---ecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEE
Confidence 9999999998543 2232 23333344 45432222322 2678999999999999 4442 2333 55555
Q ss_pred -----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCee---cc--
Q psy2470 321 -----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGHL---YP-- 388 (858)
Q Consensus 321 -----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~---~~-- 388 (858)
|.+| |||.+.+..+| ..+|+.+++-|||||. .++.+...... ||..+.|.... -|
T Consensus 163 LDEADrLld--------mgFe~~~n~IL-s~LPKQRRTGLFSATq~~~v~dL~raGLR----Npv~V~V~~k~~~~tPS~ 229 (567)
T KOG0345|consen 163 LDEADRLLD--------MGFEASVNTIL-SFLPKQRRTGLFSATQTQEVEDLARAGLR----NPVRVSVKEKSKSATPSS 229 (567)
T ss_pred ecchHhHhc--------ccHHHHHHHHH-HhcccccccccccchhhHHHHHHHHhhcc----CceeeeecccccccCchh
Confidence 9999 55555554333 3788899999999999 67778776664 66666665443 23
Q ss_pred eeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhc
Q psy2470 389 VSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVF 468 (858)
Q Consensus 389 v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~ 468 (858)
+..+|..... +.+...+++++.+...+++|||++|+..++.....+... .++..++++||.|+|.+|.+++
T Consensus 230 L~~~Y~v~~a----~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~-----l~~~~i~~iHGK~~q~~R~k~~ 300 (567)
T KOG0345|consen 230 LALEYLVCEA----DEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRL-----LKKREIFSIHGKMSQKARAKVL 300 (567)
T ss_pred hcceeeEecH----HHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHH-----hCCCcEEEecchhcchhHHHHH
Confidence 5566665432 345666777777777889999999999999999999876 2478999999999999999999
Q ss_pred CCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh-
Q psy2470 469 RPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN- 546 (858)
Q Consensus 469 ~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~- 546 (858)
+.|++....|++|||||+||||||||++||. || .|-+.++++||+|||||.|+ |.++.+.
T Consensus 301 ~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ--------~D----------pP~~~~~FvHR~GRTaR~gr~G~Aivfl~ 362 (567)
T KOG0345|consen 301 EAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ--------FD----------PPKDPSSFVHRCGRTARAGREGNAIVFLN 362 (567)
T ss_pred HHHHhccCceEEeehhhhccCCCCCceEEEe--------cC----------CCCChhHHHhhcchhhhccCccceEEEec
Confidence 9999988999999999999999999999999 88 56778889999999999998 9988777
Q ss_pred ---hhHhhhhhhhhccCCCCCCCCCCCccccCcc
Q psy2470 547 ---FMYNRLFIHFCVSRNIPTIPNDPKDVKCDVM 577 (858)
Q Consensus 547 ---~~~~~l~~~~~~~~~~p~~~~~Pei~r~~L~ 577 (858)
++|-.+-. =+ +.|++.+....
T Consensus 363 p~E~aYveFl~----i~------~~v~le~~~~e 386 (567)
T KOG0345|consen 363 PREEAYVEFLR----IK------GKVELERIDTE 386 (567)
T ss_pred ccHHHHHHHHH----hc------Cccchhhhccc
Confidence 55543332 02 23776666655
No 25
>KOG0326|consensus
Probab=100.00 E-value=2.3e-40 Score=339.58 Aligned_cols=317 Identities=13% Similarity=0.158 Sum_probs=242.3
Q ss_pred HHhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccc
Q psy2470 153 LHRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQL 232 (858)
Q Consensus 153 ~~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l 232 (858)
.+.+.|..+...++|+++|+..+...|.+.+ .++ -|++||||| +||.+|.+..
T Consensus 94 r~LLmgIfe~G~ekPSPiQeesIPiaLtGrd--iLa------------------RaKNGTGKT-----~a~~IP~Lek-- 146 (459)
T KOG0326|consen 94 RELLMGIFEKGFEKPSPIQEESIPIALTGRD--ILA------------------RAKNGTGKT-----AAYCIPVLEK-- 146 (459)
T ss_pred HHHHHHHHHhccCCCCCccccccceeecchh--hhh------------------hccCCCCCc-----cceechhhhh--
Confidence 3778899999999999999999999999843 221 289999999 9999996652
Q ss_pred cccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEe-eeeeEEEecccee--ecceeEEEeecCccccCC
Q psy2470 233 RYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEY-ISRGYMFRKGRMK--ILVSKIFKMSQGKPSDSG 309 (858)
Q Consensus 233 ~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~-~~vG~~vr~~~~~--~~~t~I~v~TpGrLl~~~ 309 (858)
.+ ..+...+++|+.||||+|.|+.+ +.++++..+|... +.+|...-.++.. ....|++|+||||++|+.
T Consensus 147 -----id--~~~~~IQ~~ilVPtrelALQtSq-vc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~ 218 (459)
T KOG0326|consen 147 -----ID--PKKNVIQAIILVPTRELALQTSQ-VCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLA 218 (459)
T ss_pred -----cC--ccccceeEEEEeecchhhHHHHH-HHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHH
Confidence 12 22345688999999999977633 3345554444330 0133222222221 255799999999999933
Q ss_pred C--ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcE
Q psy2470 310 V--EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATI 379 (858)
Q Consensus 310 ~--~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~ 379 (858)
+ -..+++..++ .+|+ .||-..+.+.+. ..|+++|+++||||+ .+..|.+.+.. +|-.
T Consensus 219 ~KgVa~ls~c~~lV~DEADKlLs----~~F~~~~e~li~-----~lP~~rQillySATFP~tVk~Fm~~~l~----kPy~ 285 (459)
T KOG0326|consen 219 KKGVADLSDCVILVMDEADKLLS----VDFQPIVEKLIS-----FLPKERQILLYSATFPLTVKGFMDRHLK----KPYE 285 (459)
T ss_pred hcccccchhceEEEechhhhhhc----hhhhhHHHHHHH-----hCCccceeeEEecccchhHHHHHHHhcc----Ccce
Confidence 3 3466666665 7788 777666655555 789999999999999 56777765553 4555
Q ss_pred EEecCee--cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccC
Q psy2470 380 LSVKGHL--YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHG 457 (858)
Q Consensus 380 i~v~g~~--~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg 457 (858)
|..-... ..|.+||........ +..+..+.....-.+.+||||+...+|.+|+.+.+. |+++..+|+
T Consensus 286 INLM~eLtl~GvtQyYafV~e~qK----vhCLntLfskLqINQsIIFCNS~~rVELLAkKITel-------GyscyyiHa 354 (459)
T KOG0326|consen 286 INLMEELTLKGVTQYYAFVEERQK----VHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITEL-------GYSCYYIHA 354 (459)
T ss_pred eehhhhhhhcchhhheeeechhhh----hhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhc-------cchhhHHHH
Confidence 5443322 457788877655443 333444444455678999999999999999999988 999999999
Q ss_pred CCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCC
Q psy2470 458 SLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRV 537 (858)
Q Consensus 458 ~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~ 537 (858)
.|.|+.|.+||..|++|..+.+||||+.-|||||+.|.+||| || .|-+.++|.||+||+||.
T Consensus 355 kM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN--------FD----------fpk~aEtYLHRIGRsGRF 416 (459)
T KOG0326|consen 355 KMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN--------FD----------FPKNAETYLHRIGRSGRF 416 (459)
T ss_pred HHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe--------cC----------CCCCHHHHHHHccCCccC
Confidence 999999999999999999999999999999999999999999 66 677889999999999999
Q ss_pred CC-ceEEEeh
Q psy2470 538 RS-GHVYRKN 546 (858)
Q Consensus 538 g~-G~~~rL~ 546 (858)
|. |.++.|.
T Consensus 417 GhlGlAInLi 426 (459)
T KOG0326|consen 417 GHLGLAINLI 426 (459)
T ss_pred CCcceEEEEE
Confidence 98 9999998
No 26
>KOG0340|consensus
Probab=100.00 E-value=9e-40 Score=340.32 Aligned_cols=308 Identities=17% Similarity=0.209 Sum_probs=216.9
Q ss_pred hhHHHHHHHhcCCCCc-cccchh------------ccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEE
Q psy2470 185 QPLLLRVRRALDFPDM-PYQLRY------------IGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIV 251 (858)
Q Consensus 185 ~~~~~~~~~~~~~~~~-~~~~~~------------~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LV 251 (858)
.+|+..-++.|+...+ |+|..- .|+|||||| +||.+|.+... - .+ .-..+++|
T Consensus 15 ~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT-----~AFaLPil~rL---s--ed----P~giFalv 80 (442)
T KOG0340|consen 15 SPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKT-----AAFALPILNRL---S--ED----PYGIFALV 80 (442)
T ss_pred cHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcc-----hhhhHHHHHhh---c--cC----CCcceEEE
Confidence 4666666677766665 666542 489999999 99999966521 1 11 12357899
Q ss_pred ccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccce------eecceeEEEeecCcccc-CCCcc-----CCCc--c
Q psy2470 252 RSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRM------KILVSKIFKMSQGKPSD-SGVEP-----ISQS--Y 317 (858)
Q Consensus 252 l~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~------~~~~t~I~v~TpGrLl~-~~~~~-----~L~~--~ 317 (858)
++||||+|.|+++++. .+|..++.. +...+++.++ .+..+|+++||||||-+ +.+++ .+++ |
T Consensus 81 lTPTrELA~QiaEQF~-alGk~l~lK---~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkf 156 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFI-ALGKLLNLK---VSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKF 156 (442)
T ss_pred ecchHHHHHHHHHHHH-Hhcccccce---EEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceee
Confidence 9999999999999984 445555444 3333344333 34679999999999999 66663 2333 4
Q ss_pred cEE----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccCHHHHHHHhhcccCC-CCcEEEecCeeccee--
Q psy2470 318 LVE----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVDAEEICQFYNISASS-NATILSVKGHLYPVS-- 390 (858)
Q Consensus 318 ~vl----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~~~~~~~~~~~~~~~-~~~~i~v~g~~~~v~-- 390 (858)
.|+ |+++ .+|-..+..... ..|+.+|+++||||+. +.+.+.++....+ -+-.+++......++
T Consensus 157 lVlDEADrvL~----~~f~d~L~~i~e-----~lP~~RQtLlfSATit-d~i~ql~~~~i~k~~a~~~e~~~~vstvetL 226 (442)
T KOG0340|consen 157 LVLDEADRVLA----GCFPDILEGIEE-----CLPKPRQTLLFSATIT-DTIKQLFGCPITKSIAFELEVIDGVSTVETL 226 (442)
T ss_pred EEecchhhhhc----cchhhHHhhhhc-----cCCCccceEEEEeehh-hHHHHhhcCCcccccceEEeccCCCCchhhh
Confidence 444 8888 555433333333 6677799999999993 1223333311000 122222211112233
Q ss_pred -EEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcC
Q psy2470 391 -VYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFR 469 (858)
Q Consensus 391 -~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~ 469 (858)
+.|...+.... +.-+--++...++++.++++||++++.+++.++..|+.. ++.+..|||.|+|.+|..++.
T Consensus 227 ~q~yI~~~~~vk-daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l-------e~r~~~lHs~m~Q~eR~~aLs 298 (442)
T KOG0340|consen 227 YQGYILVSIDVK-DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL-------EVRVVSLHSQMPQKERLAALS 298 (442)
T ss_pred hhheeecchhhh-HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh-------ceeeeehhhcchHHHHHHHHH
Confidence 23333222111 111111222334446799999999999999999999988 999999999999999999999
Q ss_pred CCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 470 PTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 470 ~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+|+++..+||+|||||+||+|||.|..||| || .|.++.+|+||+|||+|+|+ |.+++++
T Consensus 299 rFrs~~~~iliaTDVAsRGLDIP~V~LVvN--------~d----------iPr~P~~yiHRvGRtARAGR~G~aiSiv 358 (442)
T KOG0340|consen 299 RFRSNAARILIATDVASRGLDIPTVELVVN--------HD----------IPRDPKDYIHRVGRTARAGRKGMAISIV 358 (442)
T ss_pred HHhhcCccEEEEechhhcCCCCCceeEEEe--------cC----------CCCCHHHHHHhhcchhcccCCcceEEEe
Confidence 999999999999999999999999999999 88 88999999999999999998 9999988
No 27
>KOG0336|consensus
Probab=100.00 E-value=9.4e-40 Score=344.04 Aligned_cols=332 Identities=15% Similarity=0.099 Sum_probs=246.8
Q ss_pred cchHHHHHHHhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcC
Q psy2470 145 LDSAVEILLHRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALD 224 (858)
Q Consensus 145 ~~~~~~~~~~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~ 224 (858)
|+.+.+..-+.+..+....+++|.+++-+.-...|.+.+-. .+|||||||| +||+
T Consensus 221 FddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~Dli--------------------GVAQTgtgKt-----L~~L 275 (629)
T KOG0336|consen 221 FDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLI--------------------GVAQTGTGKT-----LAFL 275 (629)
T ss_pred HHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceE--------------------EEEecCCCcC-----HHHh
Confidence 45566666677888899999999999888888777774321 2599999999 6677
Q ss_pred cCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhC--CcCccEeeeeeEEEeccc--eeecceeEEEe
Q psy2470 225 FPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMG--CRMDFEYISRGYMFRKGR--MKILVSKIFKM 300 (858)
Q Consensus 225 lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g--~~~g~~~~~vG~~vr~~~--~~~~~t~I~v~ 300 (858)
+|.+.+.. .|+..-.....+.+||++||||||.|+-..+.++.- .+.... .|.+-|.+. ....+.+|+++
T Consensus 276 ~pg~ihi~---aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~---ygggnR~eqie~lkrgveiiia 349 (629)
T KOG0336|consen 276 LPGFIHID---AQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCV---YGGGNRNEQIEDLKRGVEIIIA 349 (629)
T ss_pred ccceeeee---ccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEE---ecCCCchhHHHHHhcCceEEee
Confidence 77665432 222211123345689999999999999777766543 332223 222223222 22357899999
Q ss_pred ecCccccC-C-CccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhh
Q psy2470 301 SQGKPSDS-G-VEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYN 370 (858)
Q Consensus 301 TpGrLl~~-~-~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~ 370 (858)
|||||.++ + +-..|.++.++ |||| ++|...+.|.+. -.||++|+++.|||+ .+.+++..+.
T Consensus 350 tPgrlndL~~~n~i~l~siTYlVlDEADrMLD----MgFEpqIrkill-----diRPDRqtvmTSATWP~~VrrLa~sY~ 420 (629)
T KOG0336|consen 350 TPGRLNDLQMDNVINLASITYLVLDEADRMLD----MGFEPQIRKILL-----DIRPDRQTVMTSATWPEGVRRLAQSYL 420 (629)
T ss_pred CCchHhhhhhcCeeeeeeeEEEEecchhhhhc----ccccHHHHHHhh-----hcCCcceeeeecccCchHHHHHHHHhh
Confidence 99999993 3 33466655544 9999 888888888888 789999999999999 5788887666
Q ss_pred cccCCCCcEEEecCee-----cceeEEEecCCccchHHHHHHHHHHHHhhC-CCCCEEEEcCCHHHHHHHHHHHHHhccC
Q psy2470 371 ISASSNATILSVKGHL-----YPVSVYYSNDPVVNYVQGVVDTAIKIHESM-PVGDILAFVIGLEQIEHIIGILKQYHNQ 444 (858)
Q Consensus 371 ~~~~~~~~~i~v~g~~-----~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~-~~g~iLVFl~t~~~i~~l~~~L~~~~~~ 444 (858)
+.|++..-|.. ..|++.+......+ ++..+..+..++ +..++||||..+.-++.|..-+.-.
T Consensus 421 -----Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~----k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~--- 488 (629)
T KOG0336|consen 421 -----KEPMIVYVGSLDLVAVKSVKQNIIVTTDSE----KLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLK--- 488 (629)
T ss_pred -----hCceEEEecccceeeeeeeeeeEEecccHH----HHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhc---
Confidence 34555544443 45666554333332 334444444443 2467999999999888887766643
Q ss_pred CCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCH
Q psy2470 445 REDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISK 524 (858)
Q Consensus 445 ~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~ 524 (858)
|+.+-.|||+-.|.+|+++++.|+.|.++||||||+|+||||+|||+||+| || .|-..
T Consensus 489 ----gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N--------yD----------FP~nI 546 (629)
T KOG0336|consen 489 ----GISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN--------YD----------FPRNI 546 (629)
T ss_pred ----ccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec--------cC----------CCccH
Confidence 899999999999999999999999999999999999999999999999999 88 78889
Q ss_pred hhHHHhhcccCCCCC-ceEEEeh--hhHh
Q psy2470 525 ASAVQRAGRAGRVRS-GHVYRKN--FMYN 550 (858)
Q Consensus 525 ~~~~qR~GRaGR~g~-G~~~rL~--~~~~ 550 (858)
++|+||+||+||+|+ |.+++++ .++.
T Consensus 547 eeYVHRvGrtGRaGr~G~sis~lt~~D~~ 575 (629)
T KOG0336|consen 547 EEYVHRVGRTGRAGRTGTSISFLTRNDWS 575 (629)
T ss_pred HHHHHHhcccccCCCCcceEEEEehhhHH
Confidence 999999999999998 9999887 5554
No 28
>KOG0332|consensus
Probab=100.00 E-value=6.8e-40 Score=342.91 Aligned_cols=323 Identities=14% Similarity=0.147 Sum_probs=252.6
Q ss_pred HhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCccccccc
Q psy2470 154 HRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLR 233 (858)
Q Consensus 154 ~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~ 233 (858)
+.+.|+....+++|.++|+......|..++.+.++| +|.||||| +||.|.
T Consensus 100 ellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQ------------------sqsGtGKT-----aaFvL~------- 149 (477)
T KOG0332|consen 100 ELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQ------------------SQSGTGKT-----AAFVLT------- 149 (477)
T ss_pred HHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhh------------------hcCCCchh-----HHHHHH-------
Confidence 567888888899999999999999999998888887 99999999 555554
Q ss_pred ccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccceeec---ceeEEEeecCcccc-CC
Q psy2470 234 YIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKIL---VSKIFKMSQGKPSD-SG 309 (858)
Q Consensus 234 ~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~~~~---~t~I~v~TpGrLl~-~~ 309 (858)
++.+.+.. ...+++++++||||+|.|+.+ |..+||...+.+ ..|.++....... ..+|+++|||.++| +.
T Consensus 150 MLsrvd~~--~~~PQ~iCLaPtrELA~Q~~e-Vv~eMGKf~~it---a~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~ 223 (477)
T KOG0332|consen 150 MLSRVDPD--VVVPQCICLAPTRELAPQTGE-VVEEMGKFTELT---ASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLML 223 (477)
T ss_pred HHHhcCcc--ccCCCceeeCchHHHHHHHHH-HHHHhcCceeee---EEEEecCcccccCCcchhheeeCCCccHHHHHH
Confidence 44444432 334567999999999999966 558999988877 8999988744332 25899999999999 33
Q ss_pred C--ccCCCccc--EE----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcE
Q psy2470 310 V--EPISQSYL--VE----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATI 379 (858)
Q Consensus 310 ~--~~~L~~~~--vl----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~ 379 (858)
. -..+..+. ++ -|++. ++|-..-.+... ..+++.|+++||||+ .+..|+..+.. ++.+
T Consensus 224 klk~id~~kikvfVlDEAD~Mi~t---qG~~D~S~rI~~-----~lP~~~QllLFSATf~e~V~~Fa~kivp----n~n~ 291 (477)
T KOG0332|consen 224 KLKCIDLEKIKVFVLDEADVMIDT---QGFQDQSIRIMR-----SLPRNQQLLLFSATFVEKVAAFALKIVP----NANV 291 (477)
T ss_pred HHHhhChhhceEEEecchhhhhhc---ccccccchhhhh-----hcCCcceEEeeechhHHHHHHHHHHhcC----CCce
Confidence 2 22333444 33 56661 122233333333 556799999999999 46677776664 5666
Q ss_pred EEecCee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEecc
Q psy2470 380 LSVKGHL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMH 456 (858)
Q Consensus 380 i~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LH 456 (858)
+.+..+. ++|.++|...... +.+.+.+.++.....-|+.+|||.|+..+.+++..|... |..|..||
T Consensus 292 i~Lk~eel~L~~IkQlyv~C~~~---~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~-------Gh~V~~l~ 361 (477)
T KOG0332|consen 292 IILKREELALDNIKQLYVLCACR---DDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE-------GHQVSLLH 361 (477)
T ss_pred eeeehhhccccchhhheeeccch---hhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc-------CceeEEee
Confidence 6665443 6777888765544 346666777776666899999999999999999999977 99999999
Q ss_pred CCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCC
Q psy2470 457 GSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGR 536 (858)
Q Consensus 457 g~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR 536 (858)
|+|.-++|.++++.|+.|+-||||+|||.+||||++.|++|||+++|-. |+ ---+.+.|.||+|||||
T Consensus 362 G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~--~~----------~~pD~etYlHRiGRtGR 429 (477)
T KOG0332|consen 362 GDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVK--YT----------GEPDYETYLHRIGRTGR 429 (477)
T ss_pred ccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccc--cC----------CCCCHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999666544 33 11468899999999999
Q ss_pred CCC-ceEEEeh
Q psy2470 537 VRS-GHVYRKN 546 (858)
Q Consensus 537 ~g~-G~~~rL~ 546 (858)
.|+ |.+|.+.
T Consensus 430 FGkkG~a~n~v 440 (477)
T KOG0332|consen 430 FGKKGLAINLV 440 (477)
T ss_pred ccccceEEEee
Confidence 998 9999988
No 29
>KOG0924|consensus
Probab=100.00 E-value=4.6e-41 Score=371.74 Aligned_cols=137 Identities=38% Similarity=0.602 Sum_probs=132.5
Q ss_pred ccceeeccCHHHH-hccccCCCcccccCChhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccCCCcch
Q psy2470 41 SRKFSRLYTEASF-SQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVNGNLTK 119 (858)
Q Consensus 41 ~g~c~rLy~~~~~-~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~~lt~ 119 (858)
||.|||||||+.| ++|.+.|+|||||+||+++||+||+|||+|+.+||||||||.+.|.+|+..|+.|||+|..|.||
T Consensus 687 pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~~g~LT- 765 (1042)
T KOG0924|consen 687 PGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDNTGQLT- 765 (1042)
T ss_pred CcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHHHHHHHHHHHHHhhccccCCccc-
Confidence 9999999999999 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCchhhhHHhhccccc----------chHHHHHHHhhhhhcccccCCCCcccccccchh
Q psy2470 120 PVGETMAEMPLHPIHAKVLLSSGSVL----------DSAVEILLHRLRGLCDNVDSGPETFHDHEMCFS 178 (858)
Q Consensus 120 ~lG~~ma~lp~~p~~~~~l~~s~s~~----------~~~~~~~~~r~~~~~~~~~~~~~~f~~~e~~~~ 178 (858)
|+|++|++||+||.+|||||.+.+++ +++++..|+||.+..+.++.++++|+.++.++.
T Consensus 766 ~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~~~~sDhL 834 (1042)
T KOG0924|consen 766 PLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQVPESDHL 834 (1042)
T ss_pred hhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhcCCCCchh
Confidence 89999999999999999999999887 467888999999999999999999999998876
No 30
>KOG0339|consensus
Probab=100.00 E-value=1.1e-38 Score=343.82 Aligned_cols=289 Identities=17% Similarity=0.158 Sum_probs=213.7
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHH---HHHHHhCCcCccEeeeee
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVV---EFLTEMGCRMDFEYISRG 282 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~---~v~~e~g~~~g~~~~~vG 282 (858)
-+|.|||||| +||..|.+.. ++.|++.-.|+. +..++++||||+|.||.. .+.+..|+++...|||-.
T Consensus 265 gIAktgSgkt-----aAfi~pm~~h---imdq~eL~~g~g-Pi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgs 335 (731)
T KOG0339|consen 265 GIAKTGSGKT-----AAFIWPMIVH---IMDQPELKPGEG-PIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGS 335 (731)
T ss_pred heeeccCcch-----hHHHHHHHHH---hcchhhhcCCCC-CeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCc
Confidence 3799999999 8888887664 455666544443 467999999999999844 444555555544433332
Q ss_pred EEEeccceeecceeEEEeecCcccc--CCCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEE
Q psy2470 283 YMFRKGRMKILVSKIFKMSQGKPSD--SGVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLI 354 (858)
Q Consensus 283 ~~vr~~~~~~~~t~I~v~TpGrLl~--~~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~i 354 (858)
-.-+... ...++.|+|||||||++ .++..++.+++++ ||++ ++|.-.+..+. ...|+++|++
T Consensus 336 k~eQ~k~-Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfd----mGfe~qVrSI~-----~hirpdrQtl 405 (731)
T KOG0339|consen 336 KWEQSKE-LKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFD----MGFEPQVRSIK-----QHIRPDRQTL 405 (731)
T ss_pred HHHHHHh-hhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhc----cccHHHHHHHH-----hhcCCcceEE
Confidence 1111111 22679999999999999 4666677766655 9999 55555544444 4889999999
Q ss_pred EEeccc--CHHHHHHHhhcccCCCCcEEEecCee----cceeE-EEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCC
Q psy2470 355 ISSATV--DAEEICQFYNISASSNATILSVKGHL----YPVSV-YYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIG 427 (858)
Q Consensus 355 l~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~----~~v~~-~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t 427 (858)
+||||+ .++++++-+.. .|+-.+.|.. .-+++ .+...... .....++.++......|++|+|++.
T Consensus 406 lFsaTf~~kIe~lard~L~-----dpVrvVqg~vgean~dITQ~V~V~~s~~---~Kl~wl~~~L~~f~S~gkvlifVTK 477 (731)
T KOG0339|consen 406 LFSATFKKKIEKLARDILS-----DPVRVVQGEVGEANEDITQTVSVCPSEE---KKLNWLLRHLVEFSSEGKVLIFVTK 477 (731)
T ss_pred EeeccchHHHHHHHHHHhc-----CCeeEEEeehhccccchhheeeeccCcH---HHHHHHHHHhhhhccCCcEEEEEec
Confidence 999999 78888887763 4544444321 11111 12111111 1222334445555567999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCcccee
Q psy2470 428 LEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARW 507 (858)
Q Consensus 428 ~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~ 507 (858)
+.+++.++..|.-. ++.|..|||+|.|.+|.+++..|+.+...|+||||||+||+|||++..|||
T Consensus 478 k~~~e~i~a~Lklk-------~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn-------- 542 (731)
T KOG0339|consen 478 KADAEEIAANLKLK-------GFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN-------- 542 (731)
T ss_pred cCCHHHHHHHhccc-------cceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec--------
Confidence 99999999999865 899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 508 FNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 508 yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|| .--+.+.+.||+||+||+|. |++|+|.
T Consensus 543 yD----------~ardIdththrigrtgRag~kGvayTlv 572 (731)
T KOG0339|consen 543 YD----------FARDIDTHTHRIGRTGRAGEKGVAYTLV 572 (731)
T ss_pred cc----------ccchhHHHHHHhhhcccccccceeeEEe
Confidence 77 44566788899999999998 9999999
No 31
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.4e-37 Score=362.99 Aligned_cols=286 Identities=16% Similarity=0.123 Sum_probs=200.7
Q ss_pred ccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEe
Q psy2470 207 IGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFR 286 (858)
Q Consensus 207 ~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr 286 (858)
+|+|||||| +||.+|.+.... .++.... ...+.+||++||||||.|+.+.+ +.++...+.. +....+
T Consensus 173 ~ApTGSGKT-----laylLP~l~~i~---~~~~~~~-~~gp~~LIL~PTreLa~Qi~~~~-~~~~~~~~i~---~~~~~g 239 (545)
T PTZ00110 173 IAETGSGKT-----LAFLLPAIVHIN---AQPLLRY-GDGPIVLVLAPTRELAEQIREQC-NKFGASSKIR---NTVAYG 239 (545)
T ss_pred EeCCCChHH-----HHHHHHHHHHHH---hcccccC-CCCcEEEEECChHHHHHHHHHHH-HHHhcccCcc---EEEEeC
Confidence 699999999 666677554321 1111111 12346899999999999997765 3444333332 111111
Q ss_pred ccc------eeecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCce
Q psy2470 287 KGR------MKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLK 352 (858)
Q Consensus 287 ~~~------~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q 352 (858)
+.. ....+++|+|+|||||++ +.. ...+.++.+| |+++ ++|...+.+.+. ..++++|
T Consensus 240 g~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld----~gf~~~i~~il~-----~~~~~~q 310 (545)
T PTZ00110 240 GVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLD----MGFEPQIRKIVS-----QIRPDRQ 310 (545)
T ss_pred CCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhh----cchHHHHHHHHH-----hCCCCCe
Confidence 111 112457999999999999 433 3456666655 8999 666666655555 5678999
Q ss_pred EEEEeccc--CHHHHHHHhhcccCCCCcEEEecCe----ecceeEEEecCCccchHHHHHHHHHHHHhhC--CCCCEEEE
Q psy2470 353 LIISSATV--DAEEICQFYNISASSNATILSVKGH----LYPVSVYYSNDPVVNYVQGVVDTAIKIHESM--PVGDILAF 424 (858)
Q Consensus 353 ~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~----~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~--~~g~iLVF 424 (858)
+++||||+ +++.+++.+... ++..+.+... ...+++.+......+ +...+..++... ..+++|||
T Consensus 311 ~l~~SAT~p~~v~~l~~~l~~~---~~v~i~vg~~~l~~~~~i~q~~~~~~~~~----k~~~L~~ll~~~~~~~~k~LIF 383 (545)
T PTZ00110 311 TLMWSATWPKEVQSLARDLCKE---EPVHVNVGSLDLTACHNIKQEVFVVEEHE----KRGKLKMLLQRIMRDGDKILIF 383 (545)
T ss_pred EEEEEeCCCHHHHHHHHHHhcc---CCEEEEECCCccccCCCeeEEEEEEechh----HHHHHHHHHHHhcccCCeEEEE
Confidence 99999999 456677655421 2333333211 122333222211111 222233333221 46799999
Q ss_pred cCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCcc
Q psy2470 425 VIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVK 504 (858)
Q Consensus 425 l~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k 504 (858)
|++++.++.+++.|+.. ++.+..+||++++++|..+++.|++|+.+||||||+|+||||||+|++|||
T Consensus 384 ~~t~~~a~~l~~~L~~~-------g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~----- 451 (545)
T PTZ00110 384 VETKKGADFLTKELRLD-------GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN----- 451 (545)
T ss_pred ecChHHHHHHHHHHHHc-------CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE-----
Confidence 99999999999999866 888999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 505 ARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 505 ~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|| .|-+.++|+||+|||||.|. |.||.++
T Consensus 452 ---~d----------~P~s~~~yvqRiGRtGR~G~~G~ai~~~ 481 (545)
T PTZ00110 452 ---FD----------FPNQIEDYVHRIGRTGRAGAKGASYTFL 481 (545)
T ss_pred ---eC----------CCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 77 68889999999999999987 9999999
No 32
>KOG0335|consensus
Probab=100.00 E-value=5.6e-38 Score=345.82 Aligned_cols=327 Identities=15% Similarity=0.111 Sum_probs=224.9
Q ss_pred cccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCccccccc--ccCC
Q psy2470 160 CDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLR--YIGQ 237 (858)
Q Consensus 160 ~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~--~l~~ 237 (858)
...-..+|...|.+.+.-...+..- . ..|||||||| +||++|.+-+.++ +...
T Consensus 90 ~~~~~~~ptpvQk~sip~i~~Grdl--~------------------acAqTGsGKT-----~aFLiPii~~~~~~~~~~~ 144 (482)
T KOG0335|consen 90 KRSGYTKPTPVQKYSIPIISGGRDL--M------------------ACAQTGSGKT-----AAFLIPIISYLLDEGPEDR 144 (482)
T ss_pred ccccccCCCcceeeccceeecCCce--E------------------EEccCCCcch-----HHHHHHHHHHHHhcCcccC
Confidence 3334456888888877766665321 1 2599999999 9999997765543 2222
Q ss_pred CCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCC---cCccEeeeeeEEEeccceeecceeEEEeecCcccc--CCCcc
Q psy2470 238 PEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGC---RMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD--SGVEP 312 (858)
Q Consensus 238 ~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~---~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~--~~~~~ 312 (858)
...+ +...+.+||++||||||.|+.++..+-.+. +....|++.-+.. .......+.+|+|||||||.+ ..+..
T Consensus 145 ~~~~-~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~-q~~~~~~gcdIlvaTpGrL~d~~e~g~i 222 (482)
T KOG0335|consen 145 GESG-GGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGA-QLRFIKRGCDILVATPGRLKDLIERGKI 222 (482)
T ss_pred cccC-CCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhh-hhhhhccCccEEEecCchhhhhhhccee
Confidence 2221 113466899999999999998887655433 3333332211111 111222568999999999999 33444
Q ss_pred CCCccc--EE----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecC
Q psy2470 313 ISQSYL--VE----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKG 384 (858)
Q Consensus 313 ~L~~~~--vl----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g 384 (858)
.|+... || ||+| .++|...+.+++. +........+|++|||||+ +++.++.+|..+...--.+-.+.+
T Consensus 223 ~l~~~k~~vLDEADrMlD---~mgF~p~Ir~iv~-~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~ 298 (482)
T KOG0335|consen 223 SLDNCKFLVLDEADRMLD---EMGFEPQIRKIVE-QLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGS 298 (482)
T ss_pred ehhhCcEEEecchHHhhh---hccccccHHHHhc-ccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecc
Confidence 565444 44 9998 2455555555544 2221223479999999999 667788777742100001112222
Q ss_pred eecceeEEEecCCccchHHHHHHHHHHHHhhCC----CC-----CEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEec
Q psy2470 385 HLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMP----VG-----DILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPM 455 (858)
Q Consensus 385 ~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~----~g-----~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~L 455 (858)
....+.+........+ +...+++++.... .+ .++|||.|++.++.++..|... ++++.++
T Consensus 299 ~~~ni~q~i~~V~~~~----kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~-------~~~~~sI 367 (482)
T KOG0335|consen 299 TSENITQKILFVNEME----KRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN-------GYPAKSI 367 (482)
T ss_pred ccccceeEeeeecchh----hHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC-------CCCceee
Confidence 2233433333322222 2233444443222 34 7999999999999999999977 8999999
Q ss_pred cCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccC
Q psy2470 456 HGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAG 535 (858)
Q Consensus 456 Hg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaG 535 (858)
||+.+|.+|.++++.|++|+..|+||||||+||||||+|+|||| || +|....+|+||+||||
T Consensus 368 hg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn--------yD----------mP~d~d~YvHRIGRTG 429 (482)
T KOG0335|consen 368 HGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN--------YD----------MPADIDDYVHRIGRTG 429 (482)
T ss_pred cchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE--------ee----------cCcchhhHHHhccccc
Confidence 99999999999999999999999999999999999999999999 88 7888899999999999
Q ss_pred CCCC-ceEEEeh
Q psy2470 536 RVRS-GHVYRKN 546 (858)
Q Consensus 536 R~g~-G~~~rL~ 546 (858)
|.|. |.+..|+
T Consensus 430 R~Gn~G~atsf~ 441 (482)
T KOG0335|consen 430 RVGNGGRATSFF 441 (482)
T ss_pred cCCCCceeEEEe
Confidence 9998 9999998
No 33
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=8.8e-38 Score=361.90 Aligned_cols=306 Identities=12% Similarity=0.065 Sum_probs=221.0
Q ss_pred cCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCC
Q psy2470 164 DSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVG 243 (858)
Q Consensus 164 ~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g 243 (858)
.+.|.++|...+...+.+.+ +-+.|+|||||| .||.+|.+... . . +
T Consensus 24 ~~~~t~iQ~~ai~~~l~g~d--------------------vi~~a~TGsGKT-----~a~~lpil~~l----~---~--~ 69 (460)
T PRK11776 24 YTEMTPIQAQSLPAILAGKD--------------------VIAQAKTGSGKT-----AAFGLGLLQKL----D---V--K 69 (460)
T ss_pred CCCCCHHHHHHHHHHhcCCC--------------------EEEECCCCCcHH-----HHHHHHHHHHh----h---h--c
Confidence 34466666666666665432 224699999999 66666644421 1 1 1
Q ss_pred CCccCEEEccchHHHHHHHHHHHHHHh----CCcCccEeeeeeEEEeccceeecceeEEEeecCcccc-CC-CccCCCcc
Q psy2470 244 DKARPTIVRSSIDVACSCTVVEFLTEM----GCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-SG-VEPISQSY 317 (858)
Q Consensus 244 ~~~~~~LVl~PtR~la~qva~~v~~e~----g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~-~~-~~~~L~~~ 317 (858)
...+++||++|||+||.|+++.+.... +.++...+|++....+... ...+++|+|+|||+|++ +. +...++++
T Consensus 70 ~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~-l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 70 RFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDS-LEHGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHH-hcCCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 123468999999999999988764321 2333333222222111111 12468999999999999 43 33456666
Q ss_pred cEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCe--ec
Q psy2470 318 LVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGH--LY 387 (858)
Q Consensus 318 ~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~--~~ 387 (858)
.++ ++++ ++|...+...+. ..++++|+++||||+ +...+++.+.. ++..+.+... ..
T Consensus 149 ~~lViDEad~~l~----~g~~~~l~~i~~-----~~~~~~q~ll~SAT~~~~~~~l~~~~~~----~~~~i~~~~~~~~~ 215 (460)
T PRK11776 149 NTLVLDEADRMLD----MGFQDAIDAIIR-----QAPARRQTLLFSATYPEGIAAISQRFQR----DPVEVKVESTHDLP 215 (460)
T ss_pred CEEEEECHHHHhC----cCcHHHHHHHHH-----hCCcccEEEEEEecCcHHHHHHHHHhcC----CCEEEEECcCCCCC
Confidence 665 8888 665554444444 667789999999999 45677776653 4555555432 23
Q ss_pred ceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHh
Q psy2470 388 PVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKV 467 (858)
Q Consensus 388 ~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v 467 (858)
.++.+|......+ +...+..++....++++||||+++++++.+++.|.+. ++.+..+||+|++++|..+
T Consensus 216 ~i~~~~~~~~~~~----k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~-------~~~v~~~hg~~~~~eR~~~ 284 (460)
T PRK11776 216 AIEQRFYEVSPDE----RLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQ-------GFSALALHGDLEQRDRDQV 284 (460)
T ss_pred CeeEEEEEeCcHH----HHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhC-------CCcEEEEeCCCCHHHHHHH
Confidence 3555555433322 4555666666666789999999999999999999877 8899999999999999999
Q ss_pred cCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 468 FRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 468 ~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
++.|++|..+||||||+++||||||+|++||| || .|-+.++|+||+|||||.|. |.||.++
T Consensus 285 l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~--------~d----------~p~~~~~yiqR~GRtGR~g~~G~ai~l~ 346 (460)
T PRK11776 285 LVRFANRSCSVLVATDVAARGLDIKALEAVIN--------YE----------LARDPEVHVHRIGRTGRAGSKGLALSLV 346 (460)
T ss_pred HHHHHcCCCcEEEEecccccccchhcCCeEEE--------ec----------CCCCHhHhhhhcccccCCCCcceEEEEE
Confidence 99999999999999999999999999999999 66 67788999999999999997 9999999
No 34
>KOG0925|consensus
Probab=100.00 E-value=3.5e-39 Score=346.38 Aligned_cols=136 Identities=40% Similarity=0.566 Sum_probs=128.4
Q ss_pred ccceeeccCHHHH-hccccCCCcccccCChhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccCCCcch
Q psy2470 41 SRKFSRLYTEASF-SQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVNGNLTK 119 (858)
Q Consensus 41 ~g~c~rLy~~~~~-~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~~lt~ 119 (858)
||||||||||+.| .+|++.+.|||+|+||+++||+||.+||+|+..|||||||.+++|.+|++.|..|+|||+||+||
T Consensus 377 pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDdGnLT- 455 (699)
T KOG0925|consen 377 PGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDDGNLT- 455 (699)
T ss_pred CCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCCcccc-
Confidence 9999999999999 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCchhhhHHhhccccc----------chHHHHHHHhhh-hhcccccCCCCcccccccch
Q psy2470 120 PVGETMAEMPLHPIHAKVLLSSGSVL----------DSAVEILLHRLR-GLCDNVDSGPETFHDHEMCF 177 (858)
Q Consensus 120 ~lG~~ma~lp~~p~~~~~l~~s~s~~----------~~~~~~~~~r~~-~~~~~~~~~~~~f~~~e~~~ 177 (858)
++|..|++||+||.+|||||.|.++- +.++++.|.||. +..++||+.+++|.+.+-+.
T Consensus 456 ~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAdeak~~faH~dGDH 524 (699)
T KOG0925|consen 456 SLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTSSASKAADEAKETFAHIDGDH 524 (699)
T ss_pred hhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCChhHHHHHHHHHHHhccCCcch
Confidence 69999999999999999999999885 456889999999 99999999889988876554
No 35
>KOG0348|consensus
Probab=100.00 E-value=2.3e-37 Score=336.01 Aligned_cols=344 Identities=16% Similarity=0.191 Sum_probs=241.7
Q ss_pred HhhhhcCCCCchhhhHHhhcccccchHHHHHHHhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCcc
Q psy2470 122 GETMAEMPLHPIHAKVLLSSGSVLDSAVEILLHRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMP 201 (858)
Q Consensus 122 G~~ma~lp~~p~~~~~l~~s~s~~~~~~~~~~~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~ 201 (858)
|-..+.|.+||.+..-|- .++. -++|...|...+.-.|.+.+..
T Consensus 135 s~~f~~LGL~~~lv~~L~--------------~~m~------i~~pTsVQkq~IP~lL~grD~l---------------- 178 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLN--------------TKMK------ISAPTSVQKQAIPVLLEGRDAL---------------- 178 (708)
T ss_pred cccchhcCCCHHHHHHHH--------------HHhc------cCccchHhhcchhhhhcCcceE----------------
Confidence 566777777777655442 2211 2347778888888777753322
Q ss_pred ccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeee
Q psy2470 202 YQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISR 281 (858)
Q Consensus 202 ~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~v 281 (858)
+-|||||||| +|+++|.+....++--..+ ....+.+||++||||||.|+++.+.+.... ..++.-
T Consensus 179 ----V~aQTGSGKT-----LAYllPiVq~Lq~m~~ki~---Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~---~hWIVP 243 (708)
T KOG0348|consen 179 ----VRAQTGSGKT-----LAYLLPIVQSLQAMEPKIQ---RSDGPYALVIVPTRELALQIYETVQKLLKP---FHWIVP 243 (708)
T ss_pred ----EEcCCCCccc-----HHHHHHHHHHHHhcCcccc---ccCCceEEEEechHHHHHHHHHHHHHHhcC---ceEEee
Confidence 3499999999 7888886653333221122 123457899999999999999988666554 334446
Q ss_pred eEEEeccceee------cceeEEEeecCcccc-CCCccC--CCc--ccEE----EecCCCCCchhhhhHHHHHHHHhc--
Q psy2470 282 GYMFRKGRMKI------LVSKIFKMSQGKPSD-SGVEPI--SQS--YLVE----LSILAPGGQDVIGEDMKAFAEQLK-- 344 (858)
Q Consensus 282 G~~vr~~~~~~------~~t~I~v~TpGrLl~-~~~~~~--L~~--~~vl----R~l~~~~~~d~ll~~lk~~~~~l~-- 344 (858)
|+-++++...+ ++.+|+++|||||+| +.+... +++ |.|+ |.|+ +||-+++.++|+
T Consensus 244 g~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlle--------LGfekdit~Il~~v 315 (708)
T KOG0348|consen 244 GVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLE--------LGFEKDITQILKAV 315 (708)
T ss_pred ceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHh--------ccchhhHHHHHHHH
Confidence 77888888776 568999999999999 665443 333 3344 8888 666665554443
Q ss_pred ----------ccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCee--------------------------
Q psy2470 345 ----------PLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGHL-------------------------- 386 (858)
Q Consensus 345 ----------~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~-------------------------- 386 (858)
+..++.+|.+|.|||+ .+..+++.-.. +|..|..+...
T Consensus 316 ~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLk----Dpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~ 391 (708)
T KOG0348|consen 316 HSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLK----DPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFA 391 (708)
T ss_pred hhccchhcccccccHHHHhHhhhhhhHHHHHHHhhcccc----CceeeeccchhhhcCcchhhhhhcCCccccccccccc
Confidence 1223458999999999 57778875553 33333311000
Q ss_pred --cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCC-----C----------Ccc
Q psy2470 387 --YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQR-----E----------DLK 449 (858)
Q Consensus 387 --~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~-----~----------~~~ 449 (858)
....+.|...+..-.+-.....+.+....++.-+++||+.+++.|+.-++.+......+ + ..+
T Consensus 392 iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~ 471 (708)
T KOG0348|consen 392 IPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMD 471 (708)
T ss_pred CcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhc
Confidence 00112233333333333445556666666666789999999999999999887432110 0 245
Q ss_pred eEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHH
Q psy2470 450 LLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQ 529 (858)
Q Consensus 450 ~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~q 529 (858)
.++.-|||+|+|++|..+|+.|+...+-|++|||||+||||+|+|++||. || .|-+.++|+|
T Consensus 472 ~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ--------Yd----------~P~s~adylH 533 (708)
T KOG0348|consen 472 LKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ--------YD----------PPFSTADYLH 533 (708)
T ss_pred ceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE--------eC----------CCCCHHHHHH
Confidence 67999999999999999999999999999999999999999999999999 98 7899999999
Q ss_pred hhcccCCCCC-ceEEEeh
Q psy2470 530 RAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 530 R~GRaGR~g~-G~~~rL~ 546 (858)
|+|||+|.|. |.++-+.
T Consensus 534 RvGRTARaG~kG~alLfL 551 (708)
T KOG0348|consen 534 RVGRTARAGEKGEALLFL 551 (708)
T ss_pred HhhhhhhccCCCceEEEe
Confidence 9999999997 9888665
No 36
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.5e-36 Score=347.83 Aligned_cols=314 Identities=15% Similarity=0.113 Sum_probs=212.9
Q ss_pred ccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCC
Q psy2470 163 VDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGV 242 (858)
Q Consensus 163 ~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~ 242 (858)
....|..+|...+...+.+.+ . -+.|+|||||| .||.+|.+...+... ...+.
T Consensus 27 g~~~pt~iQ~~aip~il~g~d--v------------------i~~ApTGsGKT-----la~llp~l~~l~~~~--~~~~~ 79 (423)
T PRK04837 27 GFHNCTPIQALALPLTLAGRD--V------------------AGQAQTGTGKT-----MAFLTATFHYLLSHP--APEDR 79 (423)
T ss_pred CCCCCCHHHHHHHHHHhCCCc--E------------------EEECCCCchHH-----HHHHHHHHHHHHhcc--ccccc
Confidence 334566677777776666532 2 24699999999 666666544222110 01111
Q ss_pred CCCccCEEEccchHHHHHHHHHHHH---HHhCCcCccEeeeeeEEEeccceeecceeEEEeecCcccc-CC-CccCCCcc
Q psy2470 243 GDKARPTIVRSSIDVACSCTVVEFL---TEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-SG-VEPISQSY 317 (858)
Q Consensus 243 g~~~~~~LVl~PtR~la~qva~~v~---~e~g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~-~~-~~~~L~~~ 317 (858)
....+++||++||||||.|+++.+. +..|.+++..+||.++..... ....+++|+|+|||+|++ +. +...++.+
T Consensus 80 ~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~-~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v 158 (423)
T PRK04837 80 KVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK-VLESGVDILIGTTGRLIDYAKQNHINLGAI 158 (423)
T ss_pred ccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH-HhcCCCCEEEECHHHHHHHHHcCCcccccc
Confidence 1233568999999999999976542 233444333322222211111 112457999999999999 32 33456665
Q ss_pred cEE------EecCCCCCchhhhhHHHHHHHHhcccCC--CCceEEEEecccC--HHHHHHHhhcccCCCCcEEEecCee-
Q psy2470 318 LVE------LSILAPGGQDVIGEDMKAFAEQLKPLKR--TQLKLIISSATVD--AEEICQFYNISASSNATILSVKGHL- 386 (858)
Q Consensus 318 ~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~--~~~q~il~SAT~~--~~~~~~~~~~~~~~~~~~i~v~g~~- 386 (858)
.++ ++++ .+|...+...+. ..+ ..+|.++||||++ +..+...+.. ++..+.+....
T Consensus 159 ~~lViDEad~l~~----~~f~~~i~~i~~-----~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~----~p~~i~v~~~~~ 225 (423)
T PRK04837 159 QVVVLDEADRMFD----LGFIKDIRWLFR-----RMPPANQRLNMLFSATLSYRVRELAFEHMN----NPEYVEVEPEQK 225 (423)
T ss_pred cEEEEecHHHHhh----cccHHHHHHHHH-----hCCCccceeEEEEeccCCHHHHHHHHHHCC----CCEEEEEcCCCc
Confidence 555 7777 554444333222 233 3567899999994 3444433331 45555554322
Q ss_pred --cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHH
Q psy2470 387 --YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQ 464 (858)
Q Consensus 387 --~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r 464 (858)
..+.+.+.... ...+...+..++.....+++||||++++.++.+++.|... ++.+..+||++++++|
T Consensus 226 ~~~~i~~~~~~~~----~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~-------g~~v~~lhg~~~~~~R 294 (423)
T PRK04837 226 TGHRIKEELFYPS----NEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD-------GHRVGLLTGDVAQKKR 294 (423)
T ss_pred CCCceeEEEEeCC----HHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC-------CCcEEEecCCCChhHH
Confidence 12322222111 1234555666666666789999999999999999999876 8899999999999999
Q ss_pred HHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEE
Q psy2470 465 IKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVY 543 (858)
Q Consensus 465 ~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~ 543 (858)
.++++.|++|+.+||||||+++||||||+|++||| || .|.+.++|.||+|||||.|. |.|+
T Consensus 295 ~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~--------~d----------~P~s~~~yiqR~GR~gR~G~~G~ai 356 (423)
T PRK04837 295 LRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN--------YD----------LPDDCEDYVHRIGRTGRAGASGHSI 356 (423)
T ss_pred HHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE--------eC----------CCCchhheEeccccccCCCCCeeEE
Confidence 99999999999999999999999999999999999 77 67888999999999999997 9999
Q ss_pred Eeh
Q psy2470 544 RKN 546 (858)
Q Consensus 544 rL~ 546 (858)
.++
T Consensus 357 ~~~ 359 (423)
T PRK04837 357 SLA 359 (423)
T ss_pred EEe
Confidence 999
No 37
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.9e-36 Score=345.79 Aligned_cols=316 Identities=13% Similarity=0.135 Sum_probs=221.8
Q ss_pred hcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCC
Q psy2470 159 LCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQP 238 (858)
Q Consensus 159 ~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~ 238 (858)
+.+.....|..+|...+...+.+.+ .+ +.|+|||||| .+|.+|.+.+...+..
T Consensus 16 l~~~g~~~p~~iQ~~ai~~~~~g~d--~l------------------~~apTGsGKT-----~~~~lp~l~~l~~~~~-- 68 (434)
T PRK11192 16 LQDKGYTRPTAIQAEAIPPALDGRD--VL------------------GSAPTGTGKT-----AAFLLPALQHLLDFPR-- 68 (434)
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCC--EE------------------EECCCCChHH-----HHHHHHHHHHHhhccc--
Confidence 3444445577777777777776532 12 3599999999 6666665554333211
Q ss_pred CCCCCCCccCEEEccchHHHHHHHHHHHH---HHhCCcCccEeeeeeEEEeccceeecceeEEEeecCcccc-CCC-ccC
Q psy2470 239 EMGVGDKARPTIVRSSIDVACSCTVVEFL---TEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-SGV-EPI 313 (858)
Q Consensus 239 ~~g~g~~~~~~LVl~PtR~la~qva~~v~---~e~g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~-~~~-~~~ 313 (858)
.. ....++||++|||+||.|+++++. +..+..++..+|++.+..+ .......++|+|+|||+|++ +.. ...
T Consensus 69 ~~---~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~-~~~l~~~~~IlV~Tp~rl~~~~~~~~~~ 144 (434)
T PRK11192 69 RK---SGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNH-AEVFSENQDIVVATPGRLLQYIKEENFD 144 (434)
T ss_pred cC---CCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHH-HHHhcCCCCEEEEChHHHHHHHHcCCcC
Confidence 11 122458999999999999987653 3334444444333322111 11123457999999999999 433 334
Q ss_pred CCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccC---HHHHHHHhhcccCCCCcEEEecC
Q psy2470 314 SQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVD---AEEICQFYNISASSNATILSVKG 384 (858)
Q Consensus 314 L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~---~~~~~~~~~~~~~~~~~~i~v~g 384 (858)
+.++.+| ++++ ++|...+..... ..+...|+++||||++ ...+.+++.. ++..+.+..
T Consensus 145 ~~~v~~lViDEah~~l~----~~~~~~~~~i~~-----~~~~~~q~~~~SAT~~~~~~~~~~~~~~~----~~~~i~~~~ 211 (434)
T PRK11192 145 CRAVETLILDEADRMLD----MGFAQDIETIAA-----ETRWRKQTLLFSATLEGDAVQDFAERLLN----DPVEVEAEP 211 (434)
T ss_pred cccCCEEEEECHHHHhC----CCcHHHHHHHHH-----hCccccEEEEEEeecCHHHHHHHHHHHcc----CCEEEEecC
Confidence 5666655 8888 554433333332 5566789999999995 4556666553 343444332
Q ss_pred ee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCH
Q psy2470 385 HL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPN 461 (858)
Q Consensus 385 ~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q 461 (858)
.. ..+.+++... +..+.+...+..++.....+++||||+++++++.+++.|+.. ++.+..+||+|++
T Consensus 212 ~~~~~~~i~~~~~~~---~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------~~~~~~l~g~~~~ 281 (434)
T PRK11192 212 SRRERKKIHQWYYRA---DDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA-------GINCCYLEGEMVQ 281 (434)
T ss_pred CcccccCceEEEEEe---CCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC-------CCCEEEecCCCCH
Confidence 21 2234443322 223445666777776656789999999999999999999876 8899999999999
Q ss_pred HHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-c
Q psy2470 462 NEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-G 540 (858)
Q Consensus 462 ~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G 540 (858)
.+|..+++.|++|+.+||||||++++|||||+|++||| || .|.|.+.|+||+|||||.|. |
T Consensus 282 ~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~--------~d----------~p~s~~~yiqr~GR~gR~g~~g 343 (434)
T PRK11192 282 AKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN--------FD----------MPRSADTYLHRIGRTGRAGRKG 343 (434)
T ss_pred HHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE--------EC----------CCCCHHHHhhcccccccCCCCc
Confidence 99999999999999999999999999999999999999 76 67889999999999999987 9
Q ss_pred eEEEeh
Q psy2470 541 HVYRKN 546 (858)
Q Consensus 541 ~~~rL~ 546 (858)
.|+.++
T Consensus 344 ~ai~l~ 349 (434)
T PRK11192 344 TAISLV 349 (434)
T ss_pred eEEEEe
Confidence 999988
No 38
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=4e-36 Score=355.87 Aligned_cols=308 Identities=15% Similarity=0.113 Sum_probs=217.8
Q ss_pred cccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCC
Q psy2470 162 NVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMG 241 (858)
Q Consensus 162 ~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g 241 (858)
...+.|..+|...+...+.+.+ . -+.|||||||| +||.+|.+... .. .
T Consensus 24 ~G~~~ptpiQ~~ai~~ll~g~d--v------------------l~~ApTGsGKT-----~af~lpll~~l----~~-~-- 71 (629)
T PRK11634 24 LGYEKPSPIQAECIPHLLNGRD--V------------------LGMAQTGSGKT-----AAFSLPLLHNL----DP-E-- 71 (629)
T ss_pred CCCCCCCHHHHHHHHHHHcCCC--E------------------EEEcCCCCcHH-----HHHHHHHHHHh----hh-c--
Confidence 3444566666666666554421 2 23699999999 66777754321 11 1
Q ss_pred CCCCccCEEEccchHHHHHHHHHHHHHHhC----CcCccEeeeeeEEEeccceeecceeEEEeecCcccc-CCCc-cCCC
Q psy2470 242 VGDKARPTIVRSSIDVACSCTVVEFLTEMG----CRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-SGVE-PISQ 315 (858)
Q Consensus 242 ~g~~~~~~LVl~PtR~la~qva~~v~~e~g----~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~-~~~~-~~L~ 315 (858)
....++||++|||+||.|+++.+.+..+ ..+...|++..+..+. .....+++|+|+|||+|++ +... ..++
T Consensus 72 --~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~-~~l~~~~~IVVgTPgrl~d~l~r~~l~l~ 148 (629)
T PRK11634 72 --LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL-RALRQGPQIVVGTPGRLLDHLKRGTLDLS 148 (629)
T ss_pred --cCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHH-HHhcCCCCEEEECHHHHHHHHHcCCcchh
Confidence 1224689999999999999887754432 2322222211111111 1122468999999999999 4433 3566
Q ss_pred cccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCee-
Q psy2470 316 SYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGHL- 386 (858)
Q Consensus 316 ~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~- 386 (858)
++.+| .|++ ++|...+...+. ..+++.|+++||||+ .+..+.+.|.. ++..+.+....
T Consensus 149 ~l~~lVlDEAd~ml~----~gf~~di~~Il~-----~lp~~~q~llfSAT~p~~i~~i~~~~l~----~~~~i~i~~~~~ 215 (629)
T PRK11634 149 KLSGLVLDEADEMLR----MGFIEDVETIMA-----QIPEGHQTALFSATMPEAIRRITRRFMK----EPQEVRIQSSVT 215 (629)
T ss_pred hceEEEeccHHHHhh----cccHHHHHHHHH-----hCCCCCeEEEEEccCChhHHHHHHHHcC----CCeEEEccCccc
Confidence 66655 6777 454444444333 567789999999999 35556665553 45555554332
Q ss_pred --cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHH
Q psy2470 387 --YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQ 464 (858)
Q Consensus 387 --~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r 464 (858)
..+.+.|...... .+...+..++..+....+||||+|+..++.+++.|.+. ++.+..+||+|+|.+|
T Consensus 216 ~~~~i~q~~~~v~~~----~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~-------g~~~~~lhgd~~q~~R 284 (629)
T PRK11634 216 TRPDISQSYWTVWGM----RKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN-------GYNSAALNGDMNQALR 284 (629)
T ss_pred cCCceEEEEEEechh----hHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC-------CCCEEEeeCCCCHHHH
Confidence 2344444432222 23445566666666788999999999999999999876 8999999999999999
Q ss_pred HHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEE
Q psy2470 465 IKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVY 543 (858)
Q Consensus 465 ~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~ 543 (858)
.++++.|++|+.+||||||++++|||||+|++||| || .|.+.++|+||+|||||.|+ |.|+
T Consensus 285 ~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~--------~d----------~P~~~e~yvqRiGRtGRaGr~G~ai 346 (629)
T PRK11634 285 EQTLERLKDGRLDILIATDVAARGLDVERISLVVN--------YD----------IPMDSESYVHRIGRTGRAGRAGRAL 346 (629)
T ss_pred HHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHhccccCCCCcceEE
Confidence 99999999999999999999999999999999999 77 68899999999999999998 9999
Q ss_pred Eeh
Q psy2470 544 RKN 546 (858)
Q Consensus 544 rL~ 546 (858)
.++
T Consensus 347 ~~v 349 (629)
T PRK11634 347 LFV 349 (629)
T ss_pred EEe
Confidence 998
No 39
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=5.4e-36 Score=345.97 Aligned_cols=312 Identities=12% Similarity=0.097 Sum_probs=216.5
Q ss_pred cCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCC
Q psy2470 164 DSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVG 243 (858)
Q Consensus 164 ~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g 243 (858)
...|..+|...+...+.+.+ +-+.|+|||||| .+|.+|.+...... .....+
T Consensus 21 ~~~pt~iQ~~ai~~il~g~d--------------------vlv~apTGsGKT-----la~~lpil~~l~~~---~~~~~~ 72 (456)
T PRK10590 21 YREPTPIQQQAIPAVLEGRD--------------------LMASAQTGTGKT-----AGFTLPLLQHLITR---QPHAKG 72 (456)
T ss_pred CCCCCHHHHHHHHHHhCCCC--------------------EEEECCCCCcHH-----HHHHHHHHHHhhhc---cccccc
Confidence 34466666666666665432 224699999999 77777754422111 111112
Q ss_pred CCccCEEEccchHHHHHHHHHHHHHH---hCCcCccEeeeeeEEEeccceeecceeEEEeecCcccc-C-CCccCCCccc
Q psy2470 244 DKARPTIVRSSIDVACSCTVVEFLTE---MGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-S-GVEPISQSYL 318 (858)
Q Consensus 244 ~~~~~~LVl~PtR~la~qva~~v~~e---~g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~-~-~~~~~L~~~~ 318 (858)
....++||++|||+||.|+.+.+.+. ++......++++.... ........++|+|+|||+|++ . .....++++.
T Consensus 73 ~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~-~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~ 151 (456)
T PRK10590 73 RRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINP-QMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVE 151 (456)
T ss_pred CCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHH-HHHHHcCCCcEEEEChHHHHHHHHcCCcccccce
Confidence 23346899999999999998876543 2222222211111100 001122457999999999999 3 3334566666
Q ss_pred EE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccC--HHHHHHHhhcccCCCCcEEEecCee---c
Q psy2470 319 VE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVD--AEEICQFYNISASSNATILSVKGHL---Y 387 (858)
Q Consensus 319 vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~--~~~~~~~~~~~~~~~~~~i~v~g~~---~ 387 (858)
+| ++++ .++...+...+. ..++++|+++||||+. +..+...+.. ++..+.+..+. .
T Consensus 152 ~lViDEah~ll~----~~~~~~i~~il~-----~l~~~~q~l~~SAT~~~~~~~l~~~~~~----~~~~i~~~~~~~~~~ 218 (456)
T PRK10590 152 ILVLDEADRMLD----MGFIHDIRRVLA-----KLPAKRQNLLFSATFSDDIKALAEKLLH----NPLEIEVARRNTASE 218 (456)
T ss_pred EEEeecHHHHhc----cccHHHHHHHHH-----hCCccCeEEEEeCCCcHHHHHHHHHHcC----CCeEEEEeccccccc
Confidence 65 7888 666555554444 5677889999999994 4566665542 44445443322 2
Q ss_pred ceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHh
Q psy2470 388 PVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKV 467 (858)
Q Consensus 388 ~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v 467 (858)
.+..++..... ..+...+..+.......++|||++++++++.+++.|.+. ++.+..+||++++++|.++
T Consensus 219 ~i~~~~~~~~~----~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~-------g~~~~~lhg~~~~~~R~~~ 287 (456)
T PRK10590 219 QVTQHVHFVDK----KRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD-------GIRSAAIHGNKSQGARTRA 287 (456)
T ss_pred ceeEEEEEcCH----HHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC-------CCCEEEEECCCCHHHHHHH
Confidence 23333332221 223344555555555678999999999999999999876 8899999999999999999
Q ss_pred cCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 468 FRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 468 ~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
++.|++|+.+||||||++++|||||+|++||| || .|.+.++|+||+|||||.|. |.|+.++
T Consensus 288 l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~--------~~----------~P~~~~~yvqR~GRaGR~g~~G~ai~l~ 349 (456)
T PRK10590 288 LADFKSGDIRVLVATDIAARGLDIEELPHVVN--------YE----------LPNVPEDYVHRIGRTGRAAATGEALSLV 349 (456)
T ss_pred HHHHHcCCCcEEEEccHHhcCCCcccCCEEEE--------eC----------CCCCHHHhhhhccccccCCCCeeEEEEe
Confidence 99999999999999999999999999999999 76 67889999999999999987 9999988
No 40
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.2e-35 Score=347.47 Aligned_cols=312 Identities=13% Similarity=0.103 Sum_probs=213.8
Q ss_pred cccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCC
Q psy2470 162 NVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMG 241 (858)
Q Consensus 162 ~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g 241 (858)
.....|..+|...+...+.+.+ . -++|+|||||| +||.+|.+......... ..
T Consensus 139 ~g~~~ptpiQ~~aip~il~g~d--v------------------iv~ApTGSGKT-----layllPil~~l~~~~~~--~~ 191 (518)
T PLN00206 139 AGYEFPTPIQMQAIPAALSGRS--L------------------LVSADTGSGKT-----ASFLVPIISRCCTIRSG--HP 191 (518)
T ss_pred cCCCCCCHHHHHHHHHHhcCCC--E------------------EEEecCCCCcc-----HHHHHHHHHHHHhhccc--cc
Confidence 3345677788777777775532 1 24699999999 66777755432211100 00
Q ss_pred CCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccc------eeecceeEEEeecCcccc-C-CCccC
Q psy2470 242 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGR------MKILVSKIFKMSQGKPSD-S-GVEPI 313 (858)
Q Consensus 242 ~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~------~~~~~t~I~v~TpGrLl~-~-~~~~~ 313 (858)
.......+||++|||+||.|+.+.+ +.++...+.. +...+++.. ....+++|+|+|||+|++ + .....
T Consensus 192 ~~~~~~~aLIL~PTreLa~Qi~~~~-~~l~~~~~~~---~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~ 267 (518)
T PLN00206 192 SEQRNPLAMVLTPTRELCVQVEDQA-KVLGKGLPFK---TALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIE 267 (518)
T ss_pred cccCCceEEEEeCCHHHHHHHHHHH-HHHhCCCCce---EEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCcc
Confidence 1123356899999999999987655 4444443333 111111111 122457999999999999 3 33445
Q ss_pred CCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCe
Q psy2470 314 SQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGH 385 (858)
Q Consensus 314 L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~ 385 (858)
++++.+| ++++ .+|...+.+.+. .. ++.|+++||||+ +++.+++.+.. ++..+.+...
T Consensus 268 l~~v~~lViDEad~ml~----~gf~~~i~~i~~-----~l-~~~q~l~~SATl~~~v~~l~~~~~~----~~~~i~~~~~ 333 (518)
T PLN00206 268 LDNVSVLVLDEVDCMLE----RGFRDQVMQIFQ-----AL-SQPQVLLFSATVSPEVEKFASSLAK----DIILISIGNP 333 (518)
T ss_pred chheeEEEeecHHHHhh----cchHHHHHHHHH-----hC-CCCcEEEEEeeCCHHHHHHHHHhCC----CCEEEEeCCC
Confidence 6666655 7888 554444333332 22 467999999999 56778887763 3444444322
Q ss_pred e---cceeEEEecCCccchHHHHHHHHHHHHhhC--CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCC
Q psy2470 386 L---YPVSVYYSNDPVVNYVQGVVDTAIKIHESM--PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLP 460 (858)
Q Consensus 386 ~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~--~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~ 460 (858)
. ..+.+.+......+ +...+..++... ..+++|||++++..++.+++.|... .++.+..+||+++
T Consensus 334 ~~~~~~v~q~~~~~~~~~----k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~------~g~~~~~~Hg~~~ 403 (518)
T PLN00206 334 NRPNKAVKQLAIWVETKQ----KKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV------TGLKALSIHGEKS 403 (518)
T ss_pred CCCCcceeEEEEeccchh----HHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc------cCcceEEeeCCCC
Confidence 2 12333333222222 223344444322 2468999999999999999999753 2788999999999
Q ss_pred HHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-
Q psy2470 461 NNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS- 539 (858)
Q Consensus 461 q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~- 539 (858)
+++|..+++.|++|+.+||||||+++||||||+|++||| || .|.+.++|+||+|||||.|.
T Consensus 404 ~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~--------~d----------~P~s~~~yihRiGRaGR~g~~ 465 (518)
T PLN00206 404 MKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII--------FD----------MPNTIKEYIHQIGRASRMGEK 465 (518)
T ss_pred HHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE--------eC----------CCCCHHHHHHhccccccCCCC
Confidence 999999999999999999999999999999999999999 77 68899999999999999997
Q ss_pred ceEEEeh
Q psy2470 540 GHVYRKN 546 (858)
Q Consensus 540 G~~~rL~ 546 (858)
|.|+.++
T Consensus 466 G~ai~f~ 472 (518)
T PLN00206 466 GTAIVFV 472 (518)
T ss_pred eEEEEEE
Confidence 9999998
No 41
>KOG0347|consensus
Probab=100.00 E-value=8.9e-37 Score=332.37 Aligned_cols=325 Identities=17% Similarity=0.171 Sum_probs=216.2
Q ss_pred HhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCccccccc
Q psy2470 154 HRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLR 233 (858)
Q Consensus 154 ~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~ 233 (858)
..|+.+....+..|..+|.-.+...+++... ++ --|.|||||| +||.||.+...+.
T Consensus 191 ~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~D--Il-----------------GaAeTGSGKT-----LAFGIPiv~~l~~ 246 (731)
T KOG0347|consen 191 EILRALSNLGFSRPTEIQSLVLPAAIRGKVD--IL-----------------GAAETGSGKT-----LAFGIPIVERLLE 246 (731)
T ss_pred HHHHHHHhcCCCCCccchhhcccHhhccchh--cc-----------------cccccCCCce-----eeecchhhhhhhh
Confidence 5566667777777777777777777666322 20 1389999999 9999997762211
Q ss_pred ccC--CCC--CCCCCCccCEEEccchHHHHHHHHHHH---HHHhCCcCccEeeeeeEEEeccceeecceeEEEeecCccc
Q psy2470 234 YIG--QPE--MGVGDKARPTIVRSSIDVACSCTVVEF---LTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPS 306 (858)
Q Consensus 234 ~l~--~~~--~g~g~~~~~~LVl~PtR~la~qva~~v---~~e~g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl 306 (858)
.-+ +.. +....+.+.+||++||||||.||.+.+ +...+.++...+||.. ...+++.....++|||||||||+
T Consensus 247 ~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLa-vqKQqRlL~~~p~IVVATPGRlw 325 (731)
T KOG0347|consen 247 SSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLA-VQKQQRLLNQRPDIVVATPGRLW 325 (731)
T ss_pred ccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhH-HHHHHHHHhcCCCEEEecchHHH
Confidence 100 000 000011234899999999999997765 3334555555522221 11233344467999999999999
Q ss_pred c-CCCcc----CCCcccEE------EecCCCCCchhhhhHHHHHHHHhc-ccCCCCceEEEEecccCHHHHHHH---hh-
Q psy2470 307 D-SGVEP----ISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLK-PLKRTQLKLIISSATVDAEEICQF---YN- 370 (858)
Q Consensus 307 ~-~~~~~----~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~-~~~~~~~q~il~SAT~~~~~~~~~---~~- 370 (858)
. +..+. .+.++.++ ||+. .+....+-+.+. .|. ....+.+|+++||||++....+.. -.
T Consensus 326 eli~e~n~~l~~~k~vkcLVlDEaDRmve----kghF~Els~lL~-~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~ 400 (731)
T KOG0347|consen 326 ELIEEDNTHLGNFKKVKCLVLDEADRMVE----KGHFEELSKLLK-HLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKK 400 (731)
T ss_pred HHHHhhhhhhhhhhhceEEEEccHHHHhh----hccHHHHHHHHH-HhhhhhcccccceEEEEEEeehhhcChhHHhhhc
Confidence 9 44332 34455555 9999 776665555443 443 344567899999999943221110 00
Q ss_pred ----------------cccC-CCCcEEEecCeecceeEEEecCCccchHHHHHHHHH-----------HHHhhCCCCCEE
Q psy2470 371 ----------------ISAS-SNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAI-----------KIHESMPVGDIL 422 (858)
Q Consensus 371 ----------------~~~~-~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~-----------~i~~~~~~g~iL 422 (858)
.-.. .+|.+|.+..... -.....+.++ ..+.+..||..|
T Consensus 401 ~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~-------------ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTl 467 (731)
T KOG0347|consen 401 KDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSA-------------TASTLTESLIECPPLEKDLYLYYFLTRYPGRTL 467 (731)
T ss_pred cchhhhhhHHHHHHHHHhCccCCCeeEecCcchh-------------HHHHHHHHhhcCCccccceeEEEEEeecCCceE
Confidence 0000 0111221111100 0001111110 011123489999
Q ss_pred EEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCC
Q psy2470 423 AFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGF 502 (858)
Q Consensus 423 VFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~ 502 (858)
||||+.+.|.+++-.|+.. ++..++||+.|.|.+|.+.+++|++..--||+||||||||||||+|.|||+
T Consensus 468 VF~NsId~vKRLt~~L~~L-------~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH--- 537 (731)
T KOG0347|consen 468 VFCNSIDCVKRLTVLLNNL-------DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH--- 537 (731)
T ss_pred EEechHHHHHHHHHHHhhc-------CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE---
Confidence 9999999999999999987 888999999999999999999999999999999999999999999999999
Q ss_pred ccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 503 VKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 503 ~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|. +|-+.+.|+||.|||+|++. |+..-++
T Consensus 538 -----Yq----------VPrtseiYVHRSGRTARA~~~Gvsvml~ 567 (731)
T KOG0347|consen 538 -----YQ----------VPRTSEIYVHRSGRTARANSEGVSVMLC 567 (731)
T ss_pred -----ee----------cCCccceeEecccccccccCCCeEEEEe
Confidence 76 77888889999999999998 9999888
No 42
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.9e-35 Score=345.49 Aligned_cols=310 Identities=13% Similarity=0.113 Sum_probs=210.9
Q ss_pred ccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCC-CC
Q psy2470 163 VDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPE-MG 241 (858)
Q Consensus 163 ~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~-~g 241 (858)
..+.|...|...+...+.+.+ . -+.|+|||||| .||.+|.+...+. ... .+
T Consensus 28 g~~~ptpiQ~~~ip~~l~G~D--v------------------i~~ApTGSGKT-----lafllpil~~l~~---~~~~~~ 79 (572)
T PRK04537 28 GFTRCTPIQALTLPVALPGGD--V------------------AGQAQTGTGKT-----LAFLVAVMNRLLS---RPALAD 79 (572)
T ss_pred CCCCCCHHHHHHHHHHhCCCC--E------------------EEEcCCCCcHH-----HHHHHHHHHHHHh---cccccc
Confidence 344566666666666665532 2 24699999999 6666665432211 110 00
Q ss_pred CCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccc------eeecceeEEEeecCcccc-CCCc--c
Q psy2470 242 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGR------MKILVSKIFKMSQGKPSD-SGVE--P 312 (858)
Q Consensus 242 ~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~------~~~~~t~I~v~TpGrLl~-~~~~--~ 312 (858)
......++||++|||+||.|+++.+ +.++...+.. ++...+..+ .....++|+|+|||+|++ +... .
T Consensus 80 ~~~~~~raLIl~PTreLa~Qi~~~~-~~l~~~~~i~---v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~ 155 (572)
T PRK04537 80 RKPEDPRALILAPTRELAIQIHKDA-VKFGADLGLR---FALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVV 155 (572)
T ss_pred cccCCceEEEEeCcHHHHHHHHHHH-HHHhccCCce---EEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcccc
Confidence 1112356899999999999998765 3444444443 332222211 122457999999999999 4332 2
Q ss_pred CCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCC--CCceEEEEecccC--HHHHHHHhhcccCCCCcEEEe
Q psy2470 313 ISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKR--TQLKLIISSATVD--AEEICQFYNISASSNATILSV 382 (858)
Q Consensus 313 ~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~--~~~q~il~SAT~~--~~~~~~~~~~~~~~~~~~i~v 382 (858)
.+..+.+| ++++ .+|...+...+. ..+ .+.|+++||||++ +..+...+.. ++..+.+
T Consensus 156 ~l~~v~~lViDEAh~lld----~gf~~~i~~il~-----~lp~~~~~q~ll~SATl~~~v~~l~~~~l~----~p~~i~v 222 (572)
T PRK04537 156 SLHACEICVLDEADRMFD----LGFIKDIRFLLR-----RMPERGTRQTLLFSATLSHRVLELAYEHMN----EPEKLVV 222 (572)
T ss_pred chhheeeeEecCHHHHhh----cchHHHHHHHHH-----hcccccCceEEEEeCCccHHHHHHHHHHhc----CCcEEEe
Confidence 34544443 6666 444333322222 233 2689999999994 3444443332 3444444
Q ss_pred cCeec---ceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCC
Q psy2470 383 KGHLY---PVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSL 459 (858)
Q Consensus 383 ~g~~~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l 459 (858)
..... .+.+.+.... ...+...+..++......++||||++++.++.+++.|.+. ++.+..+||+|
T Consensus 223 ~~~~~~~~~i~q~~~~~~----~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~-------g~~v~~lhg~l 291 (572)
T PRK04537 223 ETETITAARVRQRIYFPA----DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH-------GYRVGVLSGDV 291 (572)
T ss_pred ccccccccceeEEEEecC----HHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc-------CCCEEEEeCCC
Confidence 33221 2333332222 1234555666666666789999999999999999999876 88999999999
Q ss_pred CHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC
Q psy2470 460 PNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS 539 (858)
Q Consensus 460 ~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~ 539 (858)
++.+|.++++.|++|+.+||||||+++||||||+|++||| || .|.+.++|+||+|||||.|.
T Consensus 292 ~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn--------yd----------~P~s~~~yvqRiGRaGR~G~ 353 (572)
T PRK04537 292 PQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN--------YD----------LPFDAEDYVHRIGRTARLGE 353 (572)
T ss_pred CHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE--------cC----------CCCCHHHHhhhhcccccCCC
Confidence 9999999999999999999999999999999999999999 77 68899999999999999997
Q ss_pred -ceEEEeh
Q psy2470 540 -GHVYRKN 546 (858)
Q Consensus 540 -G~~~rL~ 546 (858)
|.|+.|+
T Consensus 354 ~G~ai~~~ 361 (572)
T PRK04537 354 EGDAISFA 361 (572)
T ss_pred CceEEEEe
Confidence 9999998
No 43
>KOG0341|consensus
Probab=100.00 E-value=3.4e-36 Score=315.26 Aligned_cols=289 Identities=16% Similarity=0.149 Sum_probs=198.3
Q ss_pred ccccCCcchhhhhhhhcCcCccccccc--ccCCCCCCCCCCccCEEEccchHHHHHHHHHHH---HHHh---CC---cCc
Q psy2470 207 IGQPEMGPLLLRVRRALDFPDMPYQLR--YIGQPEMGVGDKARPTIVRSSIDVACSCTVVEF---LTEM---GC---RMD 275 (858)
Q Consensus 207 ~a~TGSGKT~~~~~~a~~lP~~~~~l~--~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v---~~e~---g~---~~g 275 (858)
+|-|||||| +-|.+|.+.|.+- +.-.-.. ...+..||++|.||||.|+..-+ ...+ |. +.+
T Consensus 213 IAfTGSGKT-----lvFvLP~imf~LeqE~~lPf~~---~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~ 284 (610)
T KOG0341|consen 213 IAFTGSGKT-----LVFVLPVIMFALEQEMMLPFAR---GEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSL 284 (610)
T ss_pred EEeecCCce-----EEEeHHHHHHHHHHHhcCcccc---CCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 689999999 7788887665431 1111111 12346799999999999986533 2222 22 223
Q ss_pred cEeeeeeEEEeccceeecceeEEEeecCccccCCCcc--CCC--cccEE----EecCCCCCchhhhhHHHHHHHHhcccC
Q psy2470 276 FEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEP--ISQ--SYLVE----LSILAPGGQDVIGEDMKAFAEQLKPLK 347 (858)
Q Consensus 276 ~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~~~~~~--~L~--~~~vl----R~l~~~~~~d~ll~~lk~~~~~l~~~~ 347 (858)
.-.||+...- ..+....+.||+|+|||||.|++... .|+ +|.++ ||+| ++|-..+...+. ..
T Consensus 285 LciGG~~v~e-ql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiD----mGFEddir~iF~-----~F 354 (610)
T KOG0341|consen 285 LCIGGVPVRE-QLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMID----MGFEDDIRTIFS-----FF 354 (610)
T ss_pred hhhcCccHHH-HHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhh----ccchhhHHHHHH-----HH
Confidence 3312221111 11223367899999999999943332 333 67677 9999 555544444443 55
Q ss_pred CCCceEEEEecccC--HHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchH--HHHHHHHHHHHhhCCCCCEEE
Q psy2470 348 RTQLKLIISSATVD--AEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYV--QGVVDTAIKIHESMPVGDILA 423 (858)
Q Consensus 348 ~~~~q~il~SAT~~--~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~--~~~~~~l~~i~~~~~~g~iLV 423 (858)
...+|++||||||. ++.|++.-.. +|..+.| ||.......... ..+|+ ++++-.++.-+ ++...++||
T Consensus 355 K~QRQTLLFSATMP~KIQ~FAkSALV----KPvtvNV-GRAGAAsldViQ--evEyVkqEaKiVylLeCL-QKT~PpVLI 426 (610)
T KOG0341|consen 355 KGQRQTLLFSATMPKKIQNFAKSALV----KPVTVNV-GRAGAASLDVIQ--EVEYVKQEAKIVYLLECL-QKTSPPVLI 426 (610)
T ss_pred hhhhheeeeeccccHHHHHHHHhhcc----cceEEec-ccccccchhHHH--HHHHHHhhhhhhhHHHHh-ccCCCceEE
Confidence 67899999999994 4455553331 3333443 332211111000 11222 22222333333 233567999
Q ss_pred EcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCc
Q psy2470 424 FVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFV 503 (858)
Q Consensus 424 Fl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~ 503 (858)
|+-.+.+++.+.+.|--. |..++.+||+..|++|..+++.|+.|+..|+||||||+.|+|.|+|.||||
T Consensus 427 FaEkK~DVD~IhEYLLlK-------GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN---- 495 (610)
T KOG0341|consen 427 FAEKKADVDDIHEYLLLK-------GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN---- 495 (610)
T ss_pred EeccccChHHHHHHHHHc-------cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc----
Confidence 999999999999999755 899999999999999999999999999999999999999999999999999
Q ss_pred cceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 504 KARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 504 k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|| +|...++|+||+|||||.|+ |++-++.
T Consensus 496 ----yD----------MP~eIENYVHRIGRTGRsg~~GiATTfI 525 (610)
T KOG0341|consen 496 ----YD----------MPEEIENYVHRIGRTGRSGKTGIATTFI 525 (610)
T ss_pred ----CC----------ChHHHHHHHHHhcccCCCCCcceeeeee
Confidence 88 89999999999999999998 9998877
No 44
>KOG0327|consensus
Probab=100.00 E-value=1e-34 Score=307.45 Aligned_cols=315 Identities=16% Similarity=0.199 Sum_probs=237.4
Q ss_pred HHhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccc
Q psy2470 153 LHRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQL 232 (858)
Q Consensus 153 ~~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l 232 (858)
...|+|+..+.+++|+..|...+...+++.+. ++.||+||||| .||.++.+.
T Consensus 35 e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv--------------------~~qaqsgTgKt-----~af~i~iLq--- 86 (397)
T KOG0327|consen 35 ESLLRGIYAYGFEKPSAIQQRAILPCIKGHDV--------------------IAQAQSGTGKT-----AAFLISILQ--- 86 (397)
T ss_pred HHHHhHHHhhccCCchHHHhccccccccCCce--------------------eEeeeccccch-----hhhHHHHHh---
Confidence 47899999999999999999999999999543 23599999999 666665444
Q ss_pred cccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccE-eeeeeEEEec-cc--eeecceeEEEeecCccccC
Q psy2470 233 RYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFE-YISRGYMFRK-GR--MKILVSKIFKMSQGKPSDS 308 (858)
Q Consensus 233 ~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~-~~~vG~~vr~-~~--~~~~~t~I~v~TpGrLl~~ 308 (858)
+.+ .-.+.+++|+++||||+|+|+. .+...+|...+.. .+.+|..... +. .....++|+++||||.+++
T Consensus 87 ----~iD--~~~ke~qalilaPtreLa~qi~-~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dm 159 (397)
T KOG0327|consen 87 ----QID--MSVKETQALILAPTRELAQQIQ-KVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDM 159 (397)
T ss_pred ----hcC--cchHHHHHHHhcchHHHHHHHH-HHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHh
Confidence 112 2245578999999999999998 4556666554433 1124433222 22 2224589999999999994
Q ss_pred CCccCCC--cc--cEE----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCc
Q psy2470 309 GVEPISQ--SY--LVE----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNAT 378 (858)
Q Consensus 309 ~~~~~L~--~~--~vl----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~ 378 (858)
.+...|. .+ .++ .|+. .|+...+. .+-...+++.|++++|||+ ++...++.|.. +|.
T Consensus 160 l~~~~l~~~~iKmfvlDEaDEmLs--------~gfkdqI~-~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~----~pv 226 (397)
T KOG0327|consen 160 LNRGSLSTDGIKMFVLDEADEMLS--------RGFKDQIY-DIFQELPSDVQVVLLSATMPSDVLEVTKKFMR----EPV 226 (397)
T ss_pred hccccccccceeEEeecchHhhhc--------cchHHHHH-HHHHHcCcchhheeecccCcHHHHHHHHHhcc----Cce
Confidence 3333332 22 233 5555 34443333 2223778899999999999 66777887774 454
Q ss_pred EEEecCee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEec
Q psy2470 379 ILSVKGHL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPM 455 (858)
Q Consensus 379 ~i~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~L 455 (858)
.+.+.... .-++++|...... +++.++..++. ...+.+||+||++.+..+...|... ++.+..+
T Consensus 227 ~i~vkk~~ltl~gikq~~i~v~k~----~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~-------~~~~s~~ 293 (397)
T KOG0327|consen 227 RILVKKDELTLEGIKQFYINVEKE----EKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAH-------GFTVSAI 293 (397)
T ss_pred EEEecchhhhhhheeeeeeecccc----ccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhC-------CceEEEe
Confidence 55554222 2344555543322 27778888887 4678999999999999999999766 8999999
Q ss_pred cCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccC
Q psy2470 456 HGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAG 535 (858)
Q Consensus 456 Hg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaG 535 (858)
||+|.|.+|..+++.|+.|..+||++||+++||+||.+++.||| || .|..+++|.||+||+|
T Consensus 294 ~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvin--------yd----------lP~~~~~yihR~gr~g 355 (397)
T KOG0327|consen 294 HGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVN--------YD----------LPARKENYIHRIGRAG 355 (397)
T ss_pred ecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeee--------ec----------cccchhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999 88 7888999999999999
Q ss_pred CCCC-ceEEEeh
Q psy2470 536 RVRS-GHVYRKN 546 (858)
Q Consensus 536 R~g~-G~~~rL~ 546 (858)
|.|. |.++.+.
T Consensus 356 r~grkg~~in~v 367 (397)
T KOG0327|consen 356 RFGRKGVAINFV 367 (397)
T ss_pred ccCCCceeeeee
Confidence 9998 9999988
No 45
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.8e-34 Score=331.07 Aligned_cols=293 Identities=15% Similarity=0.139 Sum_probs=198.9
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccE----eeee
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFE----YISR 281 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~----~~~v 281 (858)
+.|+|||||| +||.+|.+...+......+ ......++|+++|||+||.|+++.+. ++....+.. +|+.
T Consensus 129 ~~apTGSGKT-----lay~lpil~~l~~~~~~~~--~~~~~~~aLil~PtreLa~Q~~~~~~-~l~~~~~~~v~~~~gg~ 200 (475)
T PRK01297 129 GRAQTGTGKT-----AAFLISIINQLLQTPPPKE--RYMGEPRALIIAPTRELVVQIAKDAA-ALTKYTGLNVMTFVGGM 200 (475)
T ss_pred EECCCCChHH-----HHHHHHHHHHHHhcCcccc--cccCCceEEEEeCcHHHHHHHHHHHH-HhhccCCCEEEEEEccC
Confidence 4699999999 6777775442211100000 00112468999999999999987663 333333333 1111
Q ss_pred eEEEeccceeecceeEEEeecCcccc-C-CCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceE
Q psy2470 282 GYMFRKGRMKILVSKIFKMSQGKPSD-S-GVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKL 353 (858)
Q Consensus 282 G~~vr~~~~~~~~t~I~v~TpGrLl~-~-~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~ 353 (858)
.+...........++|+|+|||+|++ . .....++++.+| +.++ .++...+.+.+. .+ ....+.|+
T Consensus 201 ~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~----~~~~~~l~~i~~-~~--~~~~~~q~ 273 (475)
T PRK01297 201 DFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLD----MGFIPQVRQIIR-QT--PRKEERQT 273 (475)
T ss_pred ChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHh----cccHHHHHHHHH-hC--CCCCCceE
Confidence 11111111122457999999999998 3 234456666555 5666 444333333322 11 11236799
Q ss_pred EEEeccc--CHHHHHHHhhcccCCCCcEEEecCee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCH
Q psy2470 354 IISSATV--DAEEICQFYNISASSNATILSVKGHL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGL 428 (858)
Q Consensus 354 il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~ 428 (858)
++||||+ ++..+++.+.. ++..+.+.... ..++.++...... .+...+.+++.....+++||||+++
T Consensus 274 i~~SAT~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~----~k~~~l~~ll~~~~~~~~IVF~~s~ 345 (475)
T PRK01297 274 LLFSATFTDDVMNLAKQWTT----DPAIVEIEPENVASDTVEQHVYAVAGS----DKYKLLYNLVTQNPWERVMVFANRK 345 (475)
T ss_pred EEEEeecCHHHHHHHHHhcc----CCEEEEeccCcCCCCcccEEEEEecch----hHHHHHHHHHHhcCCCeEEEEeCCH
Confidence 9999998 45566665553 44454443322 1223322222211 2344556666666667899999999
Q ss_pred HHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceec
Q psy2470 429 EQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWF 508 (858)
Q Consensus 429 ~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~y 508 (858)
++++.+++.|.+. ++.+..+||++++++|.++++.|++|+.+||||||++++|||||+|++||+ |
T Consensus 346 ~~~~~l~~~L~~~-------~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~--------~ 410 (475)
T PRK01297 346 DEVRRIEERLVKD-------GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN--------F 410 (475)
T ss_pred HHHHHHHHHHHHc-------CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE--------e
Confidence 9999999999876 788999999999999999999999999999999999999999999999999 5
Q ss_pred cCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 509 NPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 509 d~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+ .|-|.++|+||+|||||.|. |.++.++
T Consensus 411 ~----------~P~s~~~y~Qr~GRaGR~g~~g~~i~~~ 439 (475)
T PRK01297 411 T----------LPEDPDDYVHRIGRTGRAGASGVSISFA 439 (475)
T ss_pred C----------CCCCHHHHHHhhCccCCCCCCceEEEEe
Confidence 5 67899999999999999997 9999998
No 46
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=4.7e-33 Score=338.81 Aligned_cols=410 Identities=15% Similarity=0.148 Sum_probs=258.5
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHH--hCCcCccEeeeeeE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTE--MGCRMDFEYISRGY 283 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e--~g~~~g~~~~~vG~ 283 (858)
+.|+|||||| .++.+|.+.. + .. ...+++++|+|+||.|.++++.+. +|.+++.. .|.
T Consensus 44 v~APTGSGKT-----lia~lail~~----l---~~-----~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~---tGd 103 (737)
T PRK02362 44 AAIPTASGKT-----LIAELAMLKA----I---AR-----GGKALYIVPLRALASEKFEEFERFEELGVRVGIS---TGD 103 (737)
T ss_pred EECCCcchHH-----HHHHHHHHHH----H---hc-----CCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEE---eCC
Confidence 5699999999 4444442221 1 11 124799999999999999888632 14343333 221
Q ss_pred EEeccceeecceeEEEeecCcccc-CCC-ccCCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
..........++|+|+||+++.. +.+ ...++++.++ .++..+.-...+..++..+. ...++.|++++
T Consensus 104 -~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~-----~~~~~~qii~l 177 (737)
T PRK02362 104 -YDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLR-----RLNPDLQVVAL 177 (737)
T ss_pred -cCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHH-----hcCCCCcEEEE
Confidence 11111112357999999999877 332 2356666665 33330100111222233333 34567999999
Q ss_pred eccc-CHHHHHHHhhcccCCCCcEEEecCeecceeE--------EEecC---CccchHHHHHHHHHHHHhhCCCCCEEEE
Q psy2470 357 SATV-DAEEICQFYNISASSNATILSVKGHLYPVSV--------YYSND---PVVNYVQGVVDTAIKIHESMPVGDILAF 424 (858)
Q Consensus 357 SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~--------~~~~~---~~~~~~~~~~~~l~~i~~~~~~g~iLVF 424 (858)
|||+ +.+.+++|++.. .+....+..+... .+... ............+.+.+. ..+++|||
T Consensus 178 SATl~n~~~la~wl~~~------~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF 249 (737)
T PRK02362 178 SATIGNADELADWLDAE------LVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLE--EGGQCLVF 249 (737)
T ss_pred cccCCCHHHHHHHhCCC------cccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHH--cCCCeEEE
Confidence 9999 889999998731 1111111111111 11110 000001233444444443 46899999
Q ss_pred cCCHHHHHHHHHHHHHhccC--------------------CC---------CcceEEEeccCCCCHHHHHHhcCCCCCCc
Q psy2470 425 VIGLEQIEHIIGILKQYHNQ--------------------RE---------DLKLLILPMHGSLPNNEQIKVFRPTPRAM 475 (858)
Q Consensus 425 l~t~~~i~~l~~~L~~~~~~--------------------~~---------~~~~~v~~LHg~l~q~~r~~v~~~f~~g~ 475 (858)
|+++++++.+++.|...... .+ .-...+..+||+|++++|..+++.|++|.
T Consensus 250 ~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~ 329 (737)
T PRK02362 250 VSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRL 329 (737)
T ss_pred EeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCC
Confidence 99999999999998743110 00 00135788999999999999999999999
Q ss_pred EEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEehhh---H
Q psy2470 476 RKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKNFM---Y 549 (858)
Q Consensus 476 ~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~~~---~ 549 (858)
++|||||+++++|+|+|++++||+. ...||+..|. .|++..+|.||+|||||.|. |.|+-+... .
T Consensus 330 i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~ 400 (737)
T PRK02362 330 IKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDEL 400 (737)
T ss_pred CeEEEechhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhH
Confidence 9999999999999999999999973 3458866553 68999999999999999985 999998822 3
Q ss_pred hhhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHHHHhhhHhHh--------HhhhCCCCCcccccCCchHHHHHH
Q psy2470 550 NRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLEAGWCYD--------TKLIGITEPRRISVTSLANRVSEE 621 (858)
Q Consensus 550 ~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l~~~~~~l~--------~~~~~~~~~~~~~~l~~a~~~a~~ 621 (858)
..+.++|+ .++|+...+.|.++..++.++......+.+.. ..+++..+...-..++..+..+++
T Consensus 401 ~~~~~~~l--------~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~ 472 (737)
T PRK02362 401 DELFERYI--------WADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLD 472 (737)
T ss_pred HHHHHHHH--------hCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHH
Confidence 33333232 23488899999877777755544443221111 011222222222244557889999
Q ss_pred HHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeeccccccc
Q psy2470 622 LRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERT 680 (858)
Q Consensus 622 ~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~ 680 (858)
.|.+.|++ . .++.....| ++|+.++.+|++|..+.. |.+.+...+
T Consensus 473 ~L~~~~~i-----~-~~~~~~~~t-----~lG~~~s~~~l~~~t~~~---~~~~l~~~~ 517 (737)
T PRK02362 473 FLERNGMI-----E-EDGETLEAT-----ELGHLVSRLYIDPLSAAE---IIDGLEAAK 517 (737)
T ss_pred HHHHCCCe-----e-ecCCeEeEC-----hHHHHHHHhcCCHHHHHH---HHHHhhhcc
Confidence 99999999 4 222222345 999999999999999887 555555443
No 47
>KOG0334|consensus
Probab=100.00 E-value=9.5e-34 Score=331.62 Aligned_cols=305 Identities=15% Similarity=0.167 Sum_probs=226.6
Q ss_pred HHHhcCCCCc-ccc------------chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHH
Q psy2470 191 VRRALDFPDM-PYQ------------LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDV 257 (858)
Q Consensus 191 ~~~~~~~~~~-~~~------------~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~ 257 (858)
..+.|+...+ |+| +--+|.|||||| .||.||.+. ....|+....|+ .+.+||++||||
T Consensus 379 tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT-----~af~LPmir---hi~dQr~~~~gd-GPi~li~aPtre 449 (997)
T KOG0334|consen 379 TLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKT-----LAFLLPMIR---HIKDQRPLEEGD-GPIALILAPTRE 449 (997)
T ss_pred HHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccc-----hhhhcchhh---hhhcCCChhhCC-CceEEEEcCCHH
Confidence 3377777666 888 334899999999 999999884 344565555566 456899999999
Q ss_pred HHHHHHHHH---HHHhCCcCccEeeeeeEEEeccceeecceeEEEeecCcccc--CCCccC---CCcccEE------Eec
Q psy2470 258 ACSCTVVEF---LTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD--SGVEPI---SQSYLVE------LSI 323 (858)
Q Consensus 258 la~qva~~v---~~e~g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~--~~~~~~---L~~~~vl------R~l 323 (858)
+|.||.+.+ ++.+|.++...||+.|..-+.... ..++.|+||||||.+| ..+... |.+..++ ||+
T Consensus 450 la~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiael-kRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmf 528 (997)
T KOG0334|consen 450 LAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAEL-KRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMF 528 (997)
T ss_pred HHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHH-hcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhh
Confidence 999997654 445566666665555533222222 2459999999999999 333333 3333344 999
Q ss_pred CCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCee---cceeEEEecCCc
Q psy2470 324 LAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGHL---YPVSVYYSNDPV 398 (858)
Q Consensus 324 ~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~---~~v~~~~~~~~~ 398 (858)
+ +.|.....+++. ..++++|+++||||+ .++.++.-... .|.-+.+.++. ..|++.+.....
T Consensus 529 d----mgfePq~~~Ii~-----nlrpdrQtvlfSatfpr~m~~la~~vl~----~Pveiiv~~~svV~k~V~q~v~V~~~ 595 (997)
T KOG0334|consen 529 D----MGFEPQITRILQ-----NLRPDRQTVLFSATFPRSMEALARKVLK----KPVEIIVGGRSVVCKEVTQVVRVCAI 595 (997)
T ss_pred e----eccCcccchHHh-----hcchhhhhhhhhhhhhHHHHHHHHHhhc----CCeeEEEccceeEeccceEEEEEecC
Confidence 9 777766666555 789999999999999 55667776653 23335565553 233333333221
Q ss_pred cchHHHHHHHHHHHH-hhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEE
Q psy2470 399 VNYVQGVVDTAIKIH-ESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRK 477 (858)
Q Consensus 399 ~~~~~~~~~~l~~i~-~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~k 477 (858)
. ..++..++.++ .....+++||||..++.|+.|.+.|.+. ++.+..|||+.+|.+|..+++.||+|..+
T Consensus 596 e---~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~a-------g~~~~slHGgv~q~dR~sti~dfK~~~~~ 665 (997)
T KOG0334|consen 596 E---NEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKA-------GYNCDSLHGGVDQHDRSSTIEDFKNGVVN 665 (997)
T ss_pred c---hHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhc-------CcchhhhcCCCchHHHHhHHHHHhccCce
Confidence 1 12222222222 3334799999999999999999999977 99999999999999999999999999999
Q ss_pred EEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 478 IVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 478 VlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+||||++++||+|++++..||| || .|-..+.|+||+|||||+|+ |.||.+.
T Consensus 666 LLvaTsvvarGLdv~~l~Lvvn--------yd----------~pnh~edyvhR~gRTgragrkg~AvtFi 717 (997)
T KOG0334|consen 666 LLVATSVVARGLDVKELILVVN--------YD----------FPNHYEDYVHRVGRTGRAGRKGAAVTFI 717 (997)
T ss_pred EEEehhhhhcccccccceEEEE--------cc----------cchhHHHHHHHhcccccCCccceeEEEe
Confidence 9999999999999999999999 77 66667789999999999998 9999988
No 48
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2e-32 Score=330.96 Aligned_cols=406 Identities=14% Similarity=0.109 Sum_probs=246.8
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-+.|+||||||+++ .++.+. .+ ..| ..+++++|+|++|.|.++++.+ +. ..|.. |+..
T Consensus 41 lv~apTGSGKTl~a-----~lail~----~l---~~~-----~k~v~i~P~raLa~q~~~~~~~-l~-~~g~~---v~~~ 98 (674)
T PRK01172 41 IVSVPTAAGKTLIA-----YSAIYE----TF---LAG-----LKSIYIVPLRSLAMEKYEELSR-LR-SLGMR---VKIS 98 (674)
T ss_pred EEECCCCchHHHHH-----HHHHHH----HH---HhC-----CcEEEEechHHHHHHHHHHHHH-Hh-hcCCe---EEEE
Confidence 35799999999332 222111 11 111 2468899999999999988764 21 23444 4433
Q ss_pred Eeccce---eecceeEEEeecCcccc-CCCcc-CCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEE
Q psy2470 285 FRKGRM---KILVSKIFKMSQGKPSD-SGVEP-ISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLI 354 (858)
Q Consensus 285 vr~~~~---~~~~t~I~v~TpGrLl~-~~~~~-~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~i 354 (858)
++..+. ..+.++|+|+|||++.. +..++ .+++++++ .++..+.....+..++..+. ..+++.|+|
T Consensus 99 ~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~-----~~~~~~riI 173 (674)
T PRK01172 99 IGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSAR-----YVNPDARIL 173 (674)
T ss_pred eCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHH-----hcCcCCcEE
Confidence 322111 11357999999999877 44443 36667666 33320100112223333333 446789999
Q ss_pred EEeccc-CHHHHHHHhhcccCCCCcEEEecCeecceeEE--EecCCcc----chHHHHHHHHHHHHhhCCCCCEEEEcCC
Q psy2470 355 ISSATV-DAEEICQFYNISASSNATILSVKGHLYPVSVY--YSNDPVV----NYVQGVVDTAIKIHESMPVGDILAFVIG 427 (858)
Q Consensus 355 l~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~--~~~~~~~----~~~~~~~~~l~~i~~~~~~g~iLVFl~t 427 (858)
+||||+ +.+++++|++ ++.+....+..|++.. +...... .........+.... ...+++|||+++
T Consensus 174 ~lSATl~n~~~la~wl~------~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~vLVF~~s 245 (674)
T PRK01172 174 ALSATVSNANELAQWLN------ASLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETV--NDGGQVLVFVSS 245 (674)
T ss_pred EEeCccCCHHHHHHHhC------CCccCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHHH--hCCCcEEEEecc
Confidence 999999 8999999987 3334334444444422 1111000 00001122222222 246899999999
Q ss_pred HHHHHHHHHHHHHhccCCC------------------CcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccC
Q psy2470 428 LEQIEHIIGILKQYHNQRE------------------DLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSI 489 (858)
Q Consensus 428 ~~~i~~l~~~L~~~~~~~~------------------~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergl 489 (858)
+++++.+++.|.+...... .-...+..+||+|++++|..+++.|++|.++|||||+++++|+
T Consensus 246 r~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gv 325 (674)
T PRK01172 246 RKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGV 325 (674)
T ss_pred HHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccC
Confidence 9999999999975311000 0012477889999999999999999999999999999999999
Q ss_pred CCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC---CceEEEeh---hhHhhhhhhhhccCCCC
Q psy2470 490 TIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR---SGHVYRKN---FMYNRLFIHFCVSRNIP 563 (858)
Q Consensus 490 dIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g---~G~~~rL~---~~~~~l~~~~~~~~~~p 563 (858)
|+|+..+||+ +. ..|+.. ...|+|..+|.||+|||||.| .|.++.+. ++++.+.. |+
T Consensus 326 nipa~~VII~-~~---~~~~~~------~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~-~l------ 388 (674)
T PRK01172 326 NLPARLVIVR-DI---TRYGNG------GIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKK-YL------ 388 (674)
T ss_pred CCcceEEEEc-Cc---eEeCCC------CceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHH-HH------
Confidence 9999887775 22 234421 126899999999999999988 37776654 22333322 22
Q ss_pred CCCCCCCccccCcccchhhhHHHHHHHhhhHhHh--------HhhhCCCCCcccccCCchHHHHHHHHHhcCCeeeeeee
Q psy2470 564 TIPNDPKDVKCDVMFHKVFFSFFQYLLEAGWCYD--------TKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIR 635 (858)
Q Consensus 564 ~~~~~Pei~r~~L~~~~~l~~~~~~l~~~~~~l~--------~~~~~~~~~~~~~~l~~a~~~a~~~L~~lg~lv~y~v~ 635 (858)
.++|+...+.|......+..+......+.+.. ..++...+.. .+.++..+..+++.|.+.|++ +
T Consensus 389 --~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~-~~~l~~~v~~~l~~L~~~~~i-----~ 460 (674)
T PRK01172 389 --SGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNG-VDEIDYYIESSLKFLKENGFI-----K 460 (674)
T ss_pred --cCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCc-hHHHHHHHHHHHHHHHHCCCc-----c
Confidence 23378778877754444422111111111100 0012211211 123445688999999999999 4
Q ss_pred cCCCCcccCccceecchhhHHHhcccCcccccceeEeeccccccc
Q psy2470 636 FDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERT 680 (858)
Q Consensus 636 ~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~ 680 (858)
++. ....| ++|+.++.+|++|..+.. +++.+.+.+
T Consensus 461 -~~~-~~~~t-----~lG~~~s~~~l~~~t~~~---~~~~l~~~~ 495 (674)
T PRK01172 461 -GDV-TLRAT-----RLGKLTSDLYIDPESALI---LKSAFDHDY 495 (674)
T ss_pred -cCC-cEeEC-----HHHHHHHHhCCCHHHHHH---HHHHhhccC
Confidence 222 12356 999999999999999987 555555543
No 49
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.2e-32 Score=313.81 Aligned_cols=285 Identities=13% Similarity=0.162 Sum_probs=194.1
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeee-eeEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYIS-RGYM 284 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~-vG~~ 284 (858)
+.|+|||||| .++.+|.+.. +... ....++|+++|||+||.|+.+.+ ..++...+..... +|..
T Consensus 70 i~apTGsGKT-----~~~~l~~l~~----~~~~-----~~~~~~lil~Pt~~L~~Q~~~~~-~~~~~~~~~~~~~~~g~~ 134 (401)
T PTZ00424 70 GQAQSGTGKT-----ATFVIAALQL----IDYD-----LNACQALILAPTRELAQQIQKVV-LALGDYLKVRCHACVGGT 134 (401)
T ss_pred EECCCCChHH-----HHHHHHHHHH----hcCC-----CCCceEEEECCCHHHHHHHHHHH-HHHhhhcCceEEEEECCc
Confidence 4699999999 4444443331 1111 12235899999999999997655 3334333333100 2211
Q ss_pred Eecc--ceeecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEE
Q psy2470 285 FRKG--RMKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLI 354 (858)
Q Consensus 285 vr~~--~~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~i 354 (858)
...+ .....+++|+|+|||+|.+ +.. ...++++.++ +.++ .++...+.+.+. ..+++.|++
T Consensus 135 ~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~----~~~~~~~~~i~~-----~~~~~~~~i 205 (401)
T PTZ00424 135 VVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLS----RGFKGQIYDVFK-----KLPPDVQVA 205 (401)
T ss_pred CHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHh----cchHHHHHHHHh-----hCCCCcEEE
Confidence 1111 1112347999999999998 433 2346666655 4444 333322333332 456789999
Q ss_pred EEecccC--HHHHHHHhhcccCCCCcEEEecCee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHH
Q psy2470 355 ISSATVD--AEEICQFYNISASSNATILSVKGHL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLE 429 (858)
Q Consensus 355 l~SAT~~--~~~~~~~~~~~~~~~~~~i~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~ 429 (858)
++|||+. ...+...+.. ++..+.+.... ..++.++...... +.....+..+......+++||||++++
T Consensus 206 ~~SAT~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ivF~~t~~ 278 (401)
T PTZ00424 206 LFSATMPNEILELTTKFMR----DPKRILVKKDELTLEGIRQFYVAVEKE---EWKFDTLCDLYETLTITQAIIYCNTRR 278 (401)
T ss_pred EEEecCCHHHHHHHHHHcC----CCEEEEeCCCCcccCCceEEEEecChH---HHHHHHHHHHHHhcCCCeEEEEecCcH
Confidence 9999994 3444444442 34444443322 2233444332221 223444555555555678999999999
Q ss_pred HHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceecc
Q psy2470 430 QIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFN 509 (858)
Q Consensus 430 ~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd 509 (858)
.++.+++.|... ++.+..+||++++++|..+++.|++|+.+|||||+++++|||||+|++||+ ||
T Consensus 279 ~~~~l~~~l~~~-------~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~--------~~ 343 (401)
T PTZ00424 279 KVDYLTKKMHER-------DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN--------YD 343 (401)
T ss_pred HHHHHHHHHHHC-------CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE--------EC
Confidence 999999999866 788999999999999999999999999999999999999999999999999 66
Q ss_pred CCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 510 PNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 510 ~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
.|.|..+|.||+|||||.|. |.||.++
T Consensus 344 ----------~p~s~~~y~qr~GRagR~g~~G~~i~l~ 371 (401)
T PTZ00424 344 ----------LPASPENYIHRIGRSGRFGRKGVAINFV 371 (401)
T ss_pred ----------CCCCHHHEeecccccccCCCCceEEEEE
Confidence 57889999999999999986 9999999
No 50
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-33 Score=335.79 Aligned_cols=105 Identities=45% Similarity=0.686 Sum_probs=102.5
Q ss_pred ccceeeccCHHHHhccccCCCcccccCChhHHHHHHHHcCCC-CCCCCCCCCCCCHHHHHHHHHHHHhcCccccCCCcch
Q psy2470 41 SRKFSRLYTEASFSQLNECTPPEMQRTELSSAVLQLKALGIH-NILRFSFPSPPPAQNLRVALELLYSLGAMDVNGNLTK 119 (858)
Q Consensus 41 ~g~c~rLy~~~~~~~~~~~~~pei~r~~l~~~~L~lk~lg~~-~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~~lt~ 119 (858)
||+|||||||++|+.|++++.|||+|+||++++|+||+||++ |+..|+|+||||..++..|++.|+.|||+|++|+||
T Consensus 377 pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fld~P~~~~i~~A~~~L~~LGAld~~g~LT- 455 (845)
T COG1643 377 PGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSGKLT- 455 (845)
T ss_pred CceEEEecCHHHHHhcccCCChhhhhcchHHHHHHHHhcCCCCCcccCccCCCCChHHHHHHHHHHHHcCCcCCCCCCC-
Confidence 999999999999999999999999999999999999999995 999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCchhhhHHhhcccccc
Q psy2470 120 PVGETMAEMPLHPIHAKVLLSSGSVLD 146 (858)
Q Consensus 120 ~lG~~ma~lp~~p~~~~~l~~s~s~~~ 146 (858)
++|++|+.||+||++|+||+.+++.+|
T Consensus 456 ~lG~~ms~lpldprLA~mLl~a~~~g~ 482 (845)
T COG1643 456 PLGKQMSLLPLDPRLARMLLTAPEGGC 482 (845)
T ss_pred HHHHHHHhCCCChHHHHHHHhccccCc
Confidence 799999999999999999999988664
No 51
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.98 E-value=3.2e-31 Score=320.01 Aligned_cols=296 Identities=14% Similarity=0.050 Sum_probs=193.3
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| +||.+|.+..... ++..++|++.|||+||.|+.+++. +++ ..+......+...
T Consensus 56 v~apTGSGKT-----la~~LPiL~~l~~----------~~~~~aL~l~PtraLa~q~~~~l~-~l~-~~~i~v~~~~Gdt 118 (742)
T TIGR03817 56 VATGTASGKS-----LAYQLPVLSALAD----------DPRATALYLAPTKALAADQLRAVR-ELT-LRGVRPATYDGDT 118 (742)
T ss_pred EECCCCCcHH-----HHHHHHHHHHHhh----------CCCcEEEEEcChHHHHHHHHHHHH-Hhc-cCCeEEEEEeCCC
Confidence 4699999999 8888886553211 122468999999999999988774 443 2233311111111
Q ss_pred eccc--eeecceeEEEeecCcccc-CCCc-----cCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCc
Q psy2470 286 RKGR--MKILVSKIFKMSQGKPSD-SGVE-----PISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQL 351 (858)
Q Consensus 286 r~~~--~~~~~t~I~v~TpGrLl~-~~~~-----~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~ 351 (858)
..+. .....++|+++||++|.. ++.+ ..++++.++ ++.+ ..+.+ +..+++.+. .+....+.+.
T Consensus 119 ~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~-~~~il~rL~-ri~~~~g~~~ 195 (742)
T TIGR03817 119 PTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSH-VALVLRRLR-RLCARYGASP 195 (742)
T ss_pred CHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHH-HHHHHHHHH-HHHHhcCCCC
Confidence 1111 112458999999999876 3321 125555544 4332 01111 122333332 1112335678
Q ss_pred eEEEEeccc-CHHHHHHHhhcccCCCCcEEEecCeec---ceeEEEecCCc------------cchHHHHHHHHHHHHhh
Q psy2470 352 KLIISSATV-DAEEICQFYNISASSNATILSVKGHLY---PVSVYYSNDPV------------VNYVQGVVDTAIKIHES 415 (858)
Q Consensus 352 q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~---~v~~~~~~~~~------------~~~~~~~~~~l~~i~~~ 415 (858)
|+++||||+ +..++++++.. .++..+..... ..+..+...+. ......+...+..+...
T Consensus 196 q~i~~SATi~n~~~~~~~l~g-----~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~ 270 (742)
T TIGR03817 196 VFVLASATTADPAAAASRLIG-----APVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE 270 (742)
T ss_pred EEEEEecCCCCHHHHHHHHcC-----CCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC
Confidence 999999999 66667766652 33433432211 12222222110 11122344555555543
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhcc-CCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCe
Q psy2470 416 MPVGDILAFVIGLEQIEHIIGILKQYHN-QREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGI 494 (858)
Q Consensus 416 ~~~g~iLVFl~t~~~i~~l~~~L~~~~~-~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V 494 (858)
..++|||++|++.++.+++.|++... .....+..+..+||++++++|.++++.|++|+.++|||||++|+|||||+|
T Consensus 271 --~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~v 348 (742)
T TIGR03817 271 --GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGL 348 (742)
T ss_pred --CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccc
Confidence 57899999999999999999875311 111125678899999999999999999999999999999999999999999
Q ss_pred eEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 495 VYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 495 ~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
++||| |+ .|-+.++|+||+|||||.|. |.++.+.
T Consensus 349 d~VI~--------~~----------~P~s~~~y~qRiGRaGR~G~~g~ai~v~ 383 (742)
T TIGR03817 349 DAVVI--------AG----------FPGTRASLWQQAGRAGRRGQGALVVLVA 383 (742)
T ss_pred cEEEE--------eC----------CCCCHHHHHHhccccCCCCCCcEEEEEe
Confidence 99999 55 67889999999999999998 9999876
No 52
>KOG0346|consensus
Probab=99.97 E-value=6.3e-32 Score=288.20 Aligned_cols=336 Identities=14% Similarity=0.148 Sum_probs=236.7
Q ss_pred hhhhcCCCCchhhhHHhhcccccchHHHHHHHhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccc
Q psy2470 123 ETMAEMPLHPIHAKVLLSSGSVLDSAVEILLHRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPY 202 (858)
Q Consensus 123 ~~ma~lp~~p~~~~~l~~s~s~~~~~~~~~~~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 202 (858)
+..++|.+||++=+.+ .+...++|.-.|.+.+...|.+.+ .++
T Consensus 19 ktFe~~gLD~RllkAi---------------------~~lG~ekpTlIQs~aIplaLEgKD--vva-------------- 61 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAI---------------------TKLGWEKPTLIQSSAIPLALEGKD--VVA-------------- 61 (569)
T ss_pred ccHHHhCCCHHHHHHH---------------------HHhCcCCcchhhhcccchhhcCcc--eee--------------
Confidence 3456677777654444 334456789999999999998863 232
Q ss_pred cchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHH---HhCCcCccEee
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLT---EMGCRMDFEYI 279 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~---e~g~~~g~~~~ 279 (858)
-|.|||||| +||++|.++..+. ...++.+...+.++|++||||||+|+...+.+ ..+..+....+
T Consensus 62 ----rArTGSGKT-----~AYliPllqkll~---~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl 129 (569)
T KOG0346|consen 62 ----RARTGSGKT-----AAYLIPLLQKLLA---EKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINL 129 (569)
T ss_pred ----eeccCCCch-----HHHHHHHHHHHHH---hhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 289999999 9999997775433 23343445567789999999999999765532 22211111000
Q ss_pred e--eeEEEeccceeecceeEEEeecCcccc-CCCcc--CCCcccEEEecCCCCCchhh--hhHHHHHHHHhcccCCCCce
Q psy2470 280 S--RGYMFRKGRMKILVSKIFKMSQGKPSD-SGVEP--ISQSYLVELSILAPGGQDVI--GEDMKAFAEQLKPLKRTQLK 352 (858)
Q Consensus 280 ~--vG~~vr~~~~~~~~t~I~v~TpGrLl~-~~~~~--~L~~~~vlR~l~~~~~~d~l--l~~lk~~~~~l~~~~~~~~q 352 (858)
+ ..-.+.. ......++|+|+|||++++ ...+. .++.++++-+=+ .|.+ .|..+++. .+....|+..|
T Consensus 130 ~s~~sdsv~~-~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE----ADLllsfGYeedlk-~l~~~LPr~~Q 203 (569)
T KOG0346|consen 130 ASSMSDSVNS-VALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE----ADLLLSFGYEEDLK-KLRSHLPRIYQ 203 (569)
T ss_pred hcccchHHHH-HHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech----hhhhhhcccHHHHH-HHHHhCCchhh
Confidence 0 0000000 1112458999999999999 54443 344444441111 2222 55555554 33346788999
Q ss_pred EEEEeccc--CHHHHHHHhhcccCCCCcEEEecCeec----ceeEEEecCCccchHHHHHHHHHHHHh-hCCCCCEEEEc
Q psy2470 353 LIISSATV--DAEEICQFYNISASSNATILSVKGHLY----PVSVYYSNDPVVNYVQGVVDTAIKIHE-SMPVGDILAFV 425 (858)
Q Consensus 353 ~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~~----~v~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~g~iLVFl 425 (858)
.+|||||+ |+..+.+.|.+ +|.++.+....- .+.+++......|.. -.++.+++ ..-.|++|||+
T Consensus 204 ~~LmSATl~dDv~~LKkL~l~----nPviLkl~e~el~~~dqL~Qy~v~cse~DKf----lllyallKL~LI~gKsliFV 275 (569)
T KOG0346|consen 204 CFLMSATLSDDVQALKKLFLH----NPVILKLTEGELPNPDQLTQYQVKCSEEDKF----LLLYALLKLRLIRGKSLIFV 275 (569)
T ss_pred heeehhhhhhHHHHHHHHhcc----CCeEEEeccccCCCcccceEEEEEeccchhH----HHHHHHHHHHHhcCceEEEE
Confidence 99999999 88899998885 555666554332 355666655544432 22222221 22368999999
Q ss_pred CCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC----------------------
Q psy2470 426 IGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN---------------------- 483 (858)
Q Consensus 426 ~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd---------------------- 483 (858)
||.+.+-++.-.|++. |++.+.|.|.||+..|.-++++|-.|...||+|||
T Consensus 276 NtIdr~YrLkLfLeqF-------GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~k 348 (569)
T KOG0346|consen 276 NTIDRCYRLKLFLEQF-------GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPK 348 (569)
T ss_pred echhhhHHHHHHHHHh-------CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCC
Confidence 9999999998889888 99999999999999999999999999999999999
Q ss_pred -------------cccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 484 -------------IAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 484 -------------vAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
=++||||...|..||| || .|.+..+|+||+|||||.++ |.+.++.
T Consensus 349 ndkkskkK~D~E~GVsRGIDF~~V~~VlN--------FD----------~P~t~~sYIHRvGRTaRg~n~GtalSfv 407 (569)
T KOG0346|consen 349 NDKKSKKKLDKESGVSRGIDFHHVSNVLN--------FD----------FPETVTSYIHRVGRTARGNNKGTALSFV 407 (569)
T ss_pred CccccccccCchhchhccccchheeeeee--------cC----------CCCchHHHHHhccccccCCCCCceEEEe
Confidence 1469999999999999 77 78899999999999999987 9999988
No 53
>KOG4284|consensus
Probab=99.97 E-value=1.9e-31 Score=294.51 Aligned_cols=319 Identities=14% Similarity=0.136 Sum_probs=230.5
Q ss_pred HHhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccc
Q psy2470 153 LHRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQL 232 (858)
Q Consensus 153 ~~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l 232 (858)
..-+.|+..+++.-|.+.|...+...+-..+ +-+.|+.|||||++|+.+|..--
T Consensus 34 r~vl~glrrn~f~~ptkiQaaAIP~~~~kmD--------------------liVQaKSGTGKTlVfsv~av~sl------ 87 (980)
T KOG4284|consen 34 REVLLGLRRNAFALPTKIQAAAIPAIFSKMD--------------------LIVQAKSGTGKTLVFSVLAVESL------ 87 (980)
T ss_pred HHHHHHHHhhcccCCCchhhhhhhhhhcccc--------------------eEEEecCCCCceEEEEeeeehhc------
Confidence 4567899999999898888887776654421 22458999999955555543321
Q ss_pred cccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHH----hCCcCccEeeeeeEEE-eccceeecceeEEEeecCcccc
Q psy2470 233 RYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTE----MGCRMDFEYISRGYMF-RKGRMKILVSKIFKMSQGKPSD 307 (858)
Q Consensus 233 ~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e----~g~~~g~~~~~vG~~v-r~~~~~~~~t~I~v~TpGrLl~ 307 (858)
. ......+.+|++||||+|.||-..|.+- .|.++..- +|..- ..+...-+.++|+|+||||+++
T Consensus 88 ------~--~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvf---IGGT~~~~d~~rlk~~rIvIGtPGRi~q 156 (980)
T KOG4284|consen 88 ------D--SRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVF---IGGTAHKLDLIRLKQTRIVIGTPGRIAQ 156 (980)
T ss_pred ------C--cccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEE---ecCchhhhhhhhhhhceEEecCchHHHH
Confidence 0 1123356799999999999997766433 23333333 33221 1222222568999999999999
Q ss_pred CC--CccCCCccc--EE----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccC--H-HHHHHHhhcccCCC
Q psy2470 308 SG--VEPISQSYL--VE----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVD--A-EEICQFYNISASSN 376 (858)
Q Consensus 308 ~~--~~~~L~~~~--vl----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~--~-~~~~~~~~~~~~~~ 376 (858)
+. +-.+.+++. |+ ..++ ++.+ ..++- .|...+|..+|++.||||.+ . +.+++|+. +
T Consensus 157 L~el~~~n~s~vrlfVLDEADkL~~----t~sf---q~~In-~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mr-----d 223 (980)
T KOG4284|consen 157 LVELGAMNMSHVRLFVLDEADKLMD----TESF---QDDIN-IIINSLPQIRQVAAFSATYPRNLDNLLSKFMR-----D 223 (980)
T ss_pred HHHhcCCCccceeEEEeccHHhhhc----hhhH---HHHHH-HHHHhcchhheeeEEeccCchhHHHHHHHHhc-----c
Confidence 32 222333332 22 3334 3322 22222 22336788999999999993 3 45666766 5
Q ss_pred CcEEEecCe---ecceeEEEecCCccc----hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcc
Q psy2470 377 ATILSVKGH---LYPVSVYYSNDPVVN----YVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLK 449 (858)
Q Consensus 377 ~~~i~v~g~---~~~v~~~~~~~~~~~----~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~ 449 (858)
|..+....+ .+.+++||......+ ....++..|-++...-+..+.|||++....++.++..|... |
T Consensus 224 p~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss-------G 296 (980)
T KOG4284|consen 224 PALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSS-------G 296 (980)
T ss_pred cceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc-------C
Confidence 666665433 356677766544432 23456677778888888889999999999999999999876 9
Q ss_pred eEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHH
Q psy2470 450 LLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQ 529 (858)
Q Consensus 450 ~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~q 529 (858)
+.|..+.|.|+|.+|..+++..+.-..|||||||+.+||||-|+|.+||| .| .|.+.++|.|
T Consensus 297 ~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN--------iD----------~p~d~eTY~H 358 (980)
T KOG4284|consen 297 LDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN--------ID----------APADEETYFH 358 (980)
T ss_pred CCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEe--------cC----------CCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999 66 7888999999
Q ss_pred hhcccCCCCC-ceEEEeh
Q psy2470 530 RAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 530 R~GRaGR~g~-G~~~rL~ 546 (858)
|+|||||.|. |.++++.
T Consensus 359 RIGRAgRFG~~G~aVT~~ 376 (980)
T KOG4284|consen 359 RIGRAGRFGAHGAAVTLL 376 (980)
T ss_pred HhhhcccccccceeEEEe
Confidence 9999999998 9999988
No 54
>KOG0926|consensus
Probab=99.97 E-value=1.9e-32 Score=308.12 Aligned_cols=104 Identities=38% Similarity=0.628 Sum_probs=101.2
Q ss_pred ccceeeccCHHHHh-ccccCCCcccccCChhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccCCCcch
Q psy2470 41 SRKFSRLYTEASFS-QLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVNGNLTK 119 (858)
Q Consensus 41 ~g~c~rLy~~~~~~-~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~~lt~ 119 (858)
||+||||||...|+ .|.+++.|||++++.+++|||||+|+|+++.+|||++||...+|+.|.+.|..|||||.+|.||
T Consensus 694 pGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT- 772 (1172)
T KOG0926|consen 694 PGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLT- 772 (1172)
T ss_pred CCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCcc-
Confidence 99999999999996 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCchhhhHHhhccccc
Q psy2470 120 PVGETMAEMPLHPIHAKVLLSSGSVL 145 (858)
Q Consensus 120 ~lG~~ma~lp~~p~~~~~l~~s~s~~ 145 (858)
+||++|+.||+.|++||||+.+..+.
T Consensus 773 ~lGk~mS~FPlsPrfsKmL~~~~Q~~ 798 (1172)
T KOG0926|consen 773 KLGKAMSLFPLSPRFSKMLATSDQHN 798 (1172)
T ss_pred cccchhcccccChhHHHHHHHHHhhc
Confidence 69999999999999999999887765
No 55
>PRK00254 ski2-like helicase; Provisional
Probab=99.97 E-value=2.8e-30 Score=313.73 Aligned_cols=398 Identities=14% Similarity=0.077 Sum_probs=241.8
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHH--HhCCcCccEeeeeeE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLT--EMGCRMDFEYISRGY 283 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~--e~g~~~g~~~~~vG~ 283 (858)
+.|+|||||| .++.+|.+... . +. ...+++++|+|++|.|.++++.+ .+|.+++.. .|.
T Consensus 44 v~apTGsGKT-----~~~~l~il~~l---~---~~-----~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~---~Gd 104 (720)
T PRK00254 44 LAIPTASGKT-----LVAEIVMVNKL---L---RE-----GGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMT---TGD 104 (720)
T ss_pred EECCCCcHHH-----HHHHHHHHHHH---H---hc-----CCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEE---eCC
Confidence 4699999999 44444433211 1 01 12579999999999999988753 233333332 121
Q ss_pred EEeccceeecceeEEEeecCcccc-CC-CccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-SG-VEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~~-~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
..........++|+|+||+++.. +. ....++++.++ .+.+ .+.-..+...+. ...++.|+|+
T Consensus 105 -~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~----~~rg~~le~il~-----~l~~~~qiI~ 174 (720)
T PRK00254 105 -YDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGS----YDRGATLEMILT-----HMLGRAQILG 174 (720)
T ss_pred -CCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCC----ccchHHHHHHHH-----hcCcCCcEEE
Confidence 11111112457999999999877 32 23456666655 3333 222222222222 3456789999
Q ss_pred Eeccc-CHHHHHHHhhcccCCCCcEEEecCeeccee--EEEe-----cCC-ccchHHHHHHHHHHHHhhCCCCCEEEEcC
Q psy2470 356 SSATV-DAEEICQFYNISASSNATILSVKGHLYPVS--VYYS-----NDP-VVNYVQGVVDTAIKIHESMPVGDILAFVI 426 (858)
Q Consensus 356 ~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~--~~~~-----~~~-~~~~~~~~~~~l~~i~~~~~~g~iLVFl~ 426 (858)
+|||+ +.+.+++|++. ..+....+..|.. +++. ... ...+.......+.+... ..+++|||++
T Consensus 175 lSATl~n~~~la~wl~~------~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~ 246 (720)
T PRK00254 175 LSATVGNAEELAEWLNA------ELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVN 246 (720)
T ss_pred EEccCCCHHHHHHHhCC------ccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEc
Confidence 99999 89999999873 2222222222221 1111 110 01111222333444443 3578999999
Q ss_pred CHHHHHHHHHHHHHhcc----CC----------------C------CcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEE
Q psy2470 427 GLEQIEHIIGILKQYHN----QR----------------E------DLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVI 480 (858)
Q Consensus 427 t~~~i~~l~~~L~~~~~----~~----------------~------~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlv 480 (858)
|+++++.++..|.+... .. . .-...|..+||+|++++|..+++.|++|.++|||
T Consensus 247 sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLv 326 (720)
T PRK00254 247 TRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVIT 326 (720)
T ss_pred ChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEE
Confidence 99999998877753200 00 0 0123588999999999999999999999999999
Q ss_pred ecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC---CceEEEeh--hhHhhhhhh
Q psy2470 481 ATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR---SGHVYRKN--FMYNRLFIH 555 (858)
Q Consensus 481 ATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g---~G~~~rL~--~~~~~l~~~ 555 (858)
||+++++|+|+|++++||... ..|+ ..|. .+.+..+|.||+|||||.| .|.|+.+. ++...+-++
T Consensus 327 aT~tLa~Gvnipa~~vVI~~~----~~~~-~~~~-----~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~ 396 (720)
T PRK00254 327 ATPTLSAGINLPAFRVIIRDT----KRYS-NFGW-----EDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMER 396 (720)
T ss_pred eCcHHhhhcCCCceEEEECCc----eEcC-CCCc-----eeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHH
Confidence 999999999999999999633 2354 2222 3566789999999999976 39999887 221222332
Q ss_pred hhccCCCCCCCCCCCccccCcccchhhhHHHHHHHhhhHhHh--------HhhhCCCCCcccccCCchHHHHHHHHHhcC
Q psy2470 556 FCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLEAGWCYD--------TKLIGITEPRRISVTSLANRVSEELRTTLG 627 (858)
Q Consensus 556 ~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l~~~~~~l~--------~~~~~~~~~~~~~~l~~a~~~a~~~L~~lg 627 (858)
|+ .++||.+.+.+..+..++.++........+-. ..+++..+......+...+..++..|.+.+
T Consensus 397 ~~--------~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~ 468 (720)
T PRK00254 397 YI--------FGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENE 468 (720)
T ss_pred HH--------hCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCC
Confidence 33 24488888888877778755544443321110 011211111111112224566777888888
Q ss_pred CeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccc
Q psy2470 628 HTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKY 668 (858)
Q Consensus 628 ~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~ 668 (858)
++ ..+.......| ++|+.++.++++|..++.
T Consensus 469 ~i-----~~~~~~~~~~t-----~lG~~~s~~~i~~~t~~~ 499 (720)
T PRK00254 469 FI-----DIDLEDRFIPL-----PLGIRTSQLYIDPLTAKK 499 (720)
T ss_pred Ce-----EEcCCCCEeeC-----hHHHHHHHHhCCHHHHHH
Confidence 87 42221212245 999999999999999887
No 56
>KOG0350|consensus
Probab=99.97 E-value=6e-31 Score=284.74 Aligned_cols=291 Identities=15% Similarity=0.138 Sum_probs=201.0
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
+-+-|+|||||| +||.||-.+ .+++.. -..-+++|+.|||+||.||+..+ +++....|.. |+-
T Consensus 186 IcV~ApTGSGKT-----LaY~iPIVQ----~L~~R~----v~~LRavVivPtr~L~~QV~~~f-~~~~~~tgL~---V~~ 248 (620)
T KOG0350|consen 186 ICVNAPTGSGKT-----LAYVIPIVQ----LLSSRP----VKRLRAVVIVPTRELALQVYDTF-KRLNSGTGLA---VCS 248 (620)
T ss_pred eEEecCCCCCce-----eeehhHHHH----HHccCC----ccceEEEEEeeHHHHHHHHHHHH-HHhccCCceE---EEe
Confidence 445699999999 888999655 222211 12346899999999999998877 4555566666 554
Q ss_pred EEeccceee-------c----ceeEEEeecCcccc-CCCcc--CCC--cccEE----EecCCCCCchhhhhHHHHHHHHh
Q psy2470 284 MFRKGRMKI-------L----VSKIFKMSQGKPSD-SGVEP--ISQ--SYLVE----LSILAPGGQDVIGEDMKAFAEQL 343 (858)
Q Consensus 284 ~vr~~~~~~-------~----~t~I~v~TpGrLl~-~~~~~--~L~--~~~vl----R~l~~~~~~d~ll~~lk~~~~~l 343 (858)
..+..+... . ..+|+|+|||||.| +.+.+ .|+ +|.|| |+++ +-| .+++..+...+
T Consensus 249 ~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~----qsf-Q~Wl~~v~~~~ 323 (620)
T KOG0350|consen 249 LSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLD----QSF-QEWLDTVMSLC 323 (620)
T ss_pred cccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHH----HHH-HHHHHHHHHHh
Confidence 333222211 1 24899999999999 55443 455 45555 6666 222 12222111110
Q ss_pred c------------------------------ccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecC---eecc
Q psy2470 344 K------------------------------PLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKG---HLYP 388 (858)
Q Consensus 344 ~------------------------------~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g---~~~~ 388 (858)
+ ....+.++-++||||+ +..++.++-.. .|.+..+.+ ..|.
T Consensus 324 ~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~----~Prl~~v~~~~~~rys 399 (620)
T KOG0350|consen 324 KTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLH----IPRLFHVSKPLIGRYS 399 (620)
T ss_pred CCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcC----CCceEEeecccceeee
Confidence 0 0113345678899999 78888876553 344554442 1122
Q ss_pred e----eEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHH-HhccCCCCcceEEEeccCCCCHHH
Q psy2470 389 V----SVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILK-QYHNQREDLKLLILPMHGSLPNNE 463 (858)
Q Consensus 389 v----~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~-~~~~~~~~~~~~v~~LHg~l~q~~ 463 (858)
+ ...+..... .-+.-.+..++......++|+|+++.+.+.+++..|+ ... ..++.+..+.|+++++.
T Consensus 400 lp~~l~~~~vv~~~----~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~----~~~~~~s~~t~~l~~k~ 471 (620)
T KOG0350|consen 400 LPSSLSHRLVVTEP----KFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFC----SDNFKVSEFTGQLNGKR 471 (620)
T ss_pred cChhhhhceeeccc----ccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhc----cccchhhhhhhhhhHHH
Confidence 1 111111100 0122234444455557789999999999999999998 442 23677777999999999
Q ss_pred HHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceE
Q psy2470 464 QIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHV 542 (858)
Q Consensus 464 r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~ 542 (858)
|.+.++.|..|.++||||||+.+||||+.+|+.||| || .|.+..+|+||+|||||+|. |.|
T Consensus 472 r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN--------Yd----------~P~~~ktyVHR~GRTARAgq~G~a 533 (620)
T KOG0350|consen 472 RYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN--------YD----------PPASDKTYVHRAGRTARAGQDGYA 533 (620)
T ss_pred HHHHHHHHhcCCceEEEehhhhhcCCcccccceEee--------cC----------CCchhhHHHHhhcccccccCCceE
Confidence 999999999999999999999999999999999999 88 78899999999999999998 999
Q ss_pred EEeh
Q psy2470 543 YRKN 546 (858)
Q Consensus 543 ~rL~ 546 (858)
|+|.
T Consensus 534 ~tll 537 (620)
T KOG0350|consen 534 ITLL 537 (620)
T ss_pred EEee
Confidence 9998
No 57
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=1.5e-30 Score=320.55 Aligned_cols=137 Identities=31% Similarity=0.477 Sum_probs=128.2
Q ss_pred ccceeeccCHHHHhccccCCCcccccCChhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccCC---Cc
Q psy2470 41 SRKFSRLYTEASFSQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVNG---NL 117 (858)
Q Consensus 41 ~g~c~rLy~~~~~~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~---~l 117 (858)
+|+||||||+++|+.+++++.|||+|+||+++||+||+||++|+.+|+|+|||+.+++.+|++.|+.|||+|++| +|
T Consensus 394 ~G~cyRLyte~~~~~~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f~fldpP~~~~i~~A~~~L~~LGAld~~~~~~~L 473 (1283)
T TIGR01967 394 PGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPRAIRDGFRLLEELGALDDDEAEPQL 473 (1283)
T ss_pred CceEEEecCHHHHHhhhhccCcccccccHHHHHHHHHhcCCCCcccccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999 79
Q ss_pred chHHHhhhhcCCCCchhhhHHhhccccc----------chHHHHHHHhhhhhcccccCCCCcccccccchh
Q psy2470 118 TKPVGETMAEMPLHPIHAKVLLSSGSVL----------DSAVEILLHRLRGLCDNVDSGPETFHDHEMCFS 178 (858)
Q Consensus 118 t~~lG~~ma~lp~~p~~~~~l~~s~s~~----------~~~~~~~~~r~~~~~~~~~~~~~~f~~~e~~~~ 178 (858)
| ++|+.||+||+||++|+||+.+..+. .++++++|.+|.+..+.++..+..|.+.+.+|.
T Consensus 474 T-~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~~~~a~~~~~~f~~~~sD~l 543 (1283)
T TIGR01967 474 T-PIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPRERPMEKQQAADQAHARFKDPRSDFL 543 (1283)
T ss_pred c-HHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcchhHHHHHHHHHHhcCCCCCHH
Confidence 9 89999999999999999999987765 345778899999999999999999988777664
No 58
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=3.3e-29 Score=290.49 Aligned_cols=279 Identities=16% Similarity=0.148 Sum_probs=182.6
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-++++|||||| ++|++|.+.. ...+||++|+|+|+.|...++. .+|...... .|..
T Consensus 30 lv~apTGsGKT-----l~y~lp~l~~---------------~~~~lVi~P~~~L~~dq~~~l~-~~gi~~~~l---~~~~ 85 (470)
T TIGR00614 30 FVVMPTGGGKS-----LCYQLPALCS---------------DGITLVISPLISLMEDQVLQLK-ASGIPATFL---NSSQ 85 (470)
T ss_pred EEEcCCCCcHh-----HHHHHHHHHc---------------CCcEEEEecHHHHHHHHHHHHH-HcCCcEEEE---eCCC
Confidence 35799999999 6666775431 0147999999999988877763 455543322 1111
Q ss_pred Eec------cceeecceeEEEeecCcccc-C--CCcc-CCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCC
Q psy2470 285 FRK------GRMKILVSKIFKMSQGKPSD-S--GVEP-ISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKR 348 (858)
Q Consensus 285 vr~------~~~~~~~t~I~v~TpGrLl~-~--~~~~-~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~ 348 (858)
... ........+|+|+||+++.. . .... ...++..+ +..+ -|.||...+.+ +. .++ ...
T Consensus 86 ~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~--~g~~fr~~~~~-l~-~l~-~~~ 160 (470)
T TIGR00614 86 SKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQ--WGHDFRPDYKA-LG-SLK-QKF 160 (470)
T ss_pred CHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCc--cccccHHHHHH-HH-HHH-HHc
Confidence 100 01122347899999999865 2 1111 23344443 3333 11233332221 11 111 223
Q ss_pred CCceEEEEecccCHH---HHHHHhhcccCCCCcEEEecCeecceeEEEecCCcc-chHHHHHHHHHHHHh-hCCCCCEEE
Q psy2470 349 TQLKLIISSATVDAE---EICQFYNISASSNATILSVKGHLYPVSVYYSNDPVV-NYVQGVVDTAIKIHE-SMPVGDILA 423 (858)
Q Consensus 349 ~~~q~il~SAT~~~~---~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~-~~~~~~~~~l~~i~~-~~~~g~iLV 423 (858)
++.++++||||++.. .+.+.+.. ..+.+...+-..|. .+|...... +. ...+...+. ..+...+||
T Consensus 161 ~~~~~l~lTAT~~~~~~~di~~~l~l----~~~~~~~~s~~r~n-l~~~v~~~~~~~----~~~l~~~l~~~~~~~~~II 231 (470)
T TIGR00614 161 PNVPIMALTATASPSVREDILRQLNL----KNPQIFCTSFDRPN-LYYEVRRKTPKI----LEDLLRFIRKEFKGKSGII 231 (470)
T ss_pred CCCceEEEecCCCHHHHHHHHHHcCC----CCCcEEeCCCCCCC-cEEEEEeCCccH----HHHHHHHHHHhcCCCceEE
Confidence 678999999999543 34444432 22333222211111 122211111 22 222333333 333445699
Q ss_pred EcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCc
Q psy2470 424 FVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFV 503 (858)
Q Consensus 424 Fl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~ 503 (858)
||+++++++.+++.|++. ++.+.++||+|++++|.++++.|++|+.+|||||+++++|||+|+|++||+
T Consensus 232 F~~s~~~~e~la~~L~~~-------g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~---- 300 (470)
T TIGR00614 232 YCPSRKKSEQVTASLQNL-------GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH---- 300 (470)
T ss_pred EECcHHHHHHHHHHHHhc-------CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEE----
Confidence 999999999999999977 889999999999999999999999999999999999999999999999999
Q ss_pred cceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 504 KARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 504 k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+ .|-|.++|.||+|||||.|. |.|+.+|
T Consensus 301 ----~~----------~P~s~~~y~Qr~GRaGR~G~~~~~~~~~ 330 (470)
T TIGR00614 301 ----YS----------LPKSMESYYQESGRAGRDGLPSECHLFY 330 (470)
T ss_pred ----eC----------CCCCHHHHHhhhcCcCCCCCCceEEEEe
Confidence 66 67789999999999999996 9999999
No 59
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.96 E-value=2.7e-30 Score=317.03 Aligned_cols=137 Identities=31% Similarity=0.471 Sum_probs=128.9
Q ss_pred ccceeeccCHHHHhccccCCCcccccCChhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccC-----C
Q psy2470 41 SRKFSRLYTEASFSQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVN-----G 115 (858)
Q Consensus 41 ~g~c~rLy~~~~~~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~-----~ 115 (858)
+|+||||||+++|+.+++++.|||+|+||+++||+||+||++|+..|+|+|||+.+++.+|++.|+.+||+|.+ +
T Consensus 401 ~G~c~rLyte~d~~~~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~ 480 (1294)
T PRK11131 401 EGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAY 480 (1294)
T ss_pred CcEEEEeCCHHHHHhhhcccCCccccCCHHHHHHHHHHcCCCCcceeeCCCCCCHHHHHHHHHHHHHCCCCCccccCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999864 5
Q ss_pred CcchHHHhhhhcCCCCchhhhHHhhccccc----------chHHHHHHHhhhhhcccccCCCCcccccccchh
Q psy2470 116 NLTKPVGETMAEMPLHPIHAKVLLSSGSVL----------DSAVEILLHRLRGLCDNVDSGPETFHDHEMCFS 178 (858)
Q Consensus 116 ~lt~~lG~~ma~lp~~p~~~~~l~~s~s~~----------~~~~~~~~~r~~~~~~~~~~~~~~f~~~e~~~~ 178 (858)
+|| ++|++||+||+||++||||+.+..+. +++++++|.||.++.+.++..+..|.+.+.+|.
T Consensus 481 ~LT-~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~~~~~a~~~~~~f~~~~sD~l 552 (1294)
T PRK11131 481 KLT-PLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQDPRERPMDKQQASDEKHRRFADKESDFL 552 (1294)
T ss_pred cCc-HHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCchhHHHHHHHHHhhCCCCCCHH
Confidence 799 79999999999999999999988775 456889999999999999999999998888775
No 60
>KOG0337|consensus
Probab=99.96 E-value=3.5e-29 Score=266.30 Aligned_cols=314 Identities=15% Similarity=0.120 Sum_probs=218.1
Q ss_pred hhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCccccccccc
Q psy2470 156 LRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYI 235 (858)
Q Consensus 156 ~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l 235 (858)
++.+......-|.+.|+..+.-.|.+... ++ +|.|||||| +||.+|++......
T Consensus 33 ~raI~kkg~~~ptpiqRKTipliLe~~dv--v~------------------martgsgkt-----aaf~ipm~e~Lk~~- 86 (529)
T KOG0337|consen 33 LRAIHKKGFNTPTPIQRKTIPLILEGRDV--VG------------------MARTGSGKT-----AAFLIPMIEKLKSH- 86 (529)
T ss_pred HHHHHHhhcCCCCchhcccccceeecccc--ce------------------eeecCCcch-----hhHHHHHHHHHhhc-
Confidence 34455555555888999988888877433 21 489999999 99999977643221
Q ss_pred CCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEee-eeeEEEeccceee---cceeEEEeecCccccCC--
Q psy2470 236 GQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYI-SRGYMFRKGRMKI---LVSKIFKMSQGKPSDSG-- 309 (858)
Q Consensus 236 ~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~-~vG~~vr~~~~~~---~~t~I~v~TpGrLl~~~-- 309 (858)
. .+..++++++|||+||.|+.+-+ +++|..++.... .+| +...+.+.. .+++|++|||||++.+.
T Consensus 87 ------s-~~g~RalilsptreLa~qtlkvv-kdlgrgt~lr~s~~~g-gD~~eeqf~~l~~npDii~ATpgr~~h~~ve 157 (529)
T KOG0337|consen 87 ------S-QTGLRALILSPTRELALQTLKVV-KDLGRGTKLRQSLLVG-GDSIEEQFILLNENPDIIIATPGRLLHLGVE 157 (529)
T ss_pred ------c-ccccceeeccCcHHHHHHHHHHH-HHhccccchhhhhhcc-cchHHHHHHHhccCCCEEEecCceeeeeehh
Confidence 1 23346899999999999996644 777765555511 123 223333322 56999999999999932
Q ss_pred CccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccC--HHHHHHHhhcccCCCCcEEE
Q psy2470 310 VEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVD--AEEICQFYNISASSNATILS 381 (858)
Q Consensus 310 ~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~--~~~~~~~~~~~~~~~~~~i~ 381 (858)
-+..|+.+.+| |.+. +||..++.+++ .+.+.++|+++||||+. .-.|++-=. .+|..+.
T Consensus 158 m~l~l~sveyVVfdEadrlfe--------mgfqeql~e~l-~rl~~~~QTllfSatlp~~lv~fakaGl----~~p~lVR 224 (529)
T KOG0337|consen 158 MTLTLSSVEYVVFDEADRLFE--------MGFQEQLHEIL-SRLPESRQTLLFSATLPRDLVDFAKAGL----VPPVLVR 224 (529)
T ss_pred eeccccceeeeeehhhhHHHh--------hhhHHHHHHHH-HhCCCcceEEEEeccCchhhHHHHHccC----CCCceEE
Confidence 23566777666 7777 44444444322 26788899999999994 224444211 1233343
Q ss_pred ec--Cee-cceeEEEecCCccchHHHHHHHHHHHHhhC-CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccC
Q psy2470 382 VK--GHL-YPVSVYYSNDPVVNYVQGVVDTAIKIHESM-PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHG 457 (858)
Q Consensus 382 v~--g~~-~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~-~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg 457 (858)
++ .+. ...++.+..... +.+...++.++... .+.+.+||++|+..++.+.+.|+.. |+.+.-+||
T Consensus 225 ldvetkise~lk~~f~~~~~----a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~-------g~~~s~iys 293 (529)
T KOG0337|consen 225 LDVETKISELLKVRFFRVRK----AEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDF-------GGEGSDIYS 293 (529)
T ss_pred eehhhhcchhhhhheeeecc----HHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhc-------CCCcccccc
Confidence 32 221 112222222221 23444455555432 2357999999999999999999977 888889999
Q ss_pred CCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCC
Q psy2470 458 SLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRV 537 (858)
Q Consensus 458 ~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~ 537 (858)
.|.|..|..-+..|+.++..++|.||+|+||+|||..+-||| || .|.+..-+.||+||+.|+
T Consensus 294 slD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin--------yd----------~p~~~klFvhRVgr~ara 355 (529)
T KOG0337|consen 294 SLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN--------YD----------FPPDDKLFVHRVGRVARA 355 (529)
T ss_pred ccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc--------cc----------CCCCCceEEEEecchhhc
Confidence 999999999999999999999999999999999999999999 55 444445556899999999
Q ss_pred CC-ceEEEeh
Q psy2470 538 RS-GHVYRKN 546 (858)
Q Consensus 538 g~-G~~~rL~ 546 (858)
|+ |.+|.+.
T Consensus 356 grtg~aYs~V 365 (529)
T KOG0337|consen 356 GRTGRAYSLV 365 (529)
T ss_pred cccceEEEEE
Confidence 96 9999988
No 61
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.96 E-value=2.4e-28 Score=289.89 Aligned_cols=284 Identities=11% Similarity=0.032 Sum_probs=168.3
Q ss_pred ccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEE-ccchHHHHHHHHHHHH---HHhC-----------
Q psy2470 207 IGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIV-RSSIDVACSCTVVEFL---TEMG----------- 271 (858)
Q Consensus 207 ~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LV-l~PtR~la~qva~~v~---~e~g----------- 271 (858)
.||||||||.++ .+|.+|.. . +....+.|| ++||||+|.|+++.+. +.+.
T Consensus 37 ~apTGSGKTaa~--aafll~~~-----------~--~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~ 101 (844)
T TIGR02621 37 STPTGLGKTSII--AAWLLAVE-----------I--GAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWA 101 (844)
T ss_pred ecCCCCcccHHH--HHhhcccc-----------c--cccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhh
Confidence 489999999333 14444321 1 122234566 6699999999977553 3221
Q ss_pred ------------CcCccEeeeeeEEEeccceeecceeEEEeecCcccc-CCC------c-------cCCCcccEEEecCC
Q psy2470 272 ------------CRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-SGV------E-------PISQSYLVELSILA 325 (858)
Q Consensus 272 ------------~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~-~~~------~-------~~L~~~~vlR~l~~ 325 (858)
+++...+||+.+.-... ....+++|+|+|+-.+.. .+. . ..|++.+++ -.
T Consensus 102 ~~~~~~~~~~~~l~v~~l~GG~~~~~q~~-~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~L---VL 177 (844)
T TIGR02621 102 LCSTRPEKKDRPLAISTLRGQFADNDEWM-LDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALI---VH 177 (844)
T ss_pred hhccccccccCCeEEEEEECCCChHHHHH-hcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccceEE---EE
Confidence 22222333333221111 122468999999633322 110 0 013444443 00
Q ss_pred CCCchhhhhHHHHHHHHhccc-CCC---CceEEEEecccC--HHHHHHHhhcccCCCCcEEEecCeecc---eeEEEecC
Q psy2470 326 PGGQDVIGEDMKAFAEQLKPL-KRT---QLKLIISSATVD--AEEICQFYNISASSNATILSVKGHLYP---VSVYYSND 396 (858)
Q Consensus 326 ~~~~d~ll~~lk~~~~~l~~~-~~~---~~q~il~SAT~~--~~~~~~~~~~~~~~~~~~i~v~g~~~~---v~~~~~~~ 396 (858)
|| .|..++|...+.+++... .++ ++|+++||||++ ...+...+.. ++..+.+..+... +.+++ ..
T Consensus 178 DE-ADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~----~p~~i~V~~~~l~a~ki~q~v-~v 251 (844)
T TIGR02621 178 DE-AHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSA----EDYKHPVLKKRLAAKKIVKLV-PP 251 (844)
T ss_pred eh-hhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHcc----CCceeecccccccccceEEEE-ec
Confidence 11 113355555555444321 122 379999999994 4556555552 3333344322211 22222 22
Q ss_pred CccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHH-----HhcCCC
Q psy2470 397 PVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQI-----KVFRPT 471 (858)
Q Consensus 397 ~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~-----~v~~~f 471 (858)
....+....+..+..+.. +..+++||||||+++++.+++.|++. ++ ..|||+|+|.+|. ++++.|
T Consensus 252 ~~e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~-------g~--~lLHG~m~q~dR~~~~~~~il~~F 321 (844)
T TIGR02621 252 SDEKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKE-------KF--ELLTGTLRGAERDDLVKKEIFNRF 321 (844)
T ss_pred ChHHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhc-------CC--eEeeCCCCHHHHhhHHHHHHHHHH
Confidence 222222233333333332 44688999999999999999999865 54 8899999999999 788888
Q ss_pred CC----Cc-------EEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-
Q psy2470 472 PR----AM-------RKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS- 539 (858)
Q Consensus 472 ~~----g~-------~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~- 539 (858)
++ |. .+|||||||+||||||+. ++||+ |+ .| .++|+||+||+||.|.
T Consensus 322 k~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~--------d~----------aP--~esyIQRiGRtgR~G~~ 380 (844)
T TIGR02621 322 LPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVC--------DL----------AP--FESMQQRFGRVNRFGEL 380 (844)
T ss_pred hccccccccccccccceEEeccchhhhcccCCc-ceEEE--------CC----------CC--HHHHHHHhcccCCCCCC
Confidence 76 44 789999999999999987 88888 43 23 4899999999999987
Q ss_pred -ceEEEeh
Q psy2470 540 -GHVYRKN 546 (858)
Q Consensus 540 -G~~~rL~ 546 (858)
|..+.++
T Consensus 381 ~~~~i~vv 388 (844)
T TIGR02621 381 QACQIAVV 388 (844)
T ss_pred CCceEEEE
Confidence 3334444
No 62
>KOG0344|consensus
Probab=99.96 E-value=3.5e-29 Score=277.68 Aligned_cols=326 Identities=14% Similarity=0.105 Sum_probs=226.3
Q ss_pred hhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCccccccccc
Q psy2470 156 LRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYI 235 (858)
Q Consensus 156 ~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l 235 (858)
+..+.++.+..|...|...+.+-+.. ++.++ .|+|||||| +||.+|.+..... .
T Consensus 148 l~nl~~~~F~~Pt~iq~~aipvfl~~--r~~lA------------------capTGsgKt-----laf~~Pil~~L~~-~ 201 (593)
T KOG0344|consen 148 LENLQELGFDEPTPIQKQAIPVFLEK--RDVLA------------------CAPTGSGKT-----LAFNLPILQHLKD-L 201 (593)
T ss_pred HHhHhhCCCCCCCcccchhhhhhhcc--cceEE------------------eccCCCcch-----hhhhhHHHHHHHH-h
Confidence 55666677778988888887777766 33332 499999999 8888985443222 2
Q ss_pred CCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhC--CcCccEeeeeeEEE----eccceeecceeEEEeecCcccc-C
Q psy2470 236 GQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMG--CRMDFEYISRGYMF----RKGRMKILVSKIFKMSQGKPSD-S 308 (858)
Q Consensus 236 ~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g--~~~g~~~~~vG~~v----r~~~~~~~~t~I~v~TpGrLl~-~ 308 (858)
.+ + .++..-+++|+.|||+||.|++.++.+. . ...+.......|.. ..........+|++.||-|+.. +
T Consensus 202 ~~-~--~~~~gl~a~Il~ptreLa~Qi~re~~k~-~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~ 277 (593)
T KOG0344|consen 202 SQ-E--KHKVGLRALILSPTRELAAQIYREMRKY-SIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLL 277 (593)
T ss_pred hc-c--cCccceEEEEecchHHHHHHHHHHHHhc-CCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHh
Confidence 22 2 2344457899999999999998877433 3 22222200011111 0111111346899999999998 4
Q ss_pred CCcc---CCCcccEEEecCCCCCchhh---hhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEE
Q psy2470 309 GVEP---ISQSYLVELSILAPGGQDVI---GEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATIL 380 (858)
Q Consensus 309 ~~~~---~L~~~~vlR~l~~~~~~d~l---l~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i 380 (858)
...+ .+.++.++-+.+ .|.+ ..|.+++..++.....++.++-+||||+ .++++++.... +...+
T Consensus 278 ~~~~~~idl~~V~~lV~dE----aD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~----~~~~v 349 (593)
T KOG0344|consen 278 GLGKLNIDLSKVEWLVVDE----ADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKS----DLKRV 349 (593)
T ss_pred cCCCccchhheeeeEeech----HHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhc----cceeE
Confidence 4443 566666662223 3322 2455666555555667889999999999 56777765552 23333
Q ss_pred EecCee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccC
Q psy2470 381 SVKGHL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHG 457 (858)
Q Consensus 381 ~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg 457 (858)
.|.-+. ..|++........ ..+.-.+.++....-..++|||+-+.+.+..|...|... +++.+..+||
T Consensus 350 ivg~~~sa~~~V~QelvF~gse---~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~------~~i~v~vIh~ 420 (593)
T KOG0344|consen 350 IVGLRNSANETVDQELVFCGSE---KGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIY------DNINVDVIHG 420 (593)
T ss_pred EEecchhHhhhhhhhheeeecc---hhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhc------cCcceeeEec
Confidence 333221 1333322222111 223444555555555678999999999999999999632 3888999999
Q ss_pred CCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCC
Q psy2470 458 SLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRV 537 (858)
Q Consensus 458 ~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~ 537 (858)
..+|.+|..++++|+.|+++|++|||+.+||+|+.||+.||| || .|-+.-+|+||+||+||+
T Consensus 421 e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn--------yD----------~p~s~~syihrIGRtgRa 482 (593)
T KOG0344|consen 421 ERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN--------YD----------FPQSDLSYIHRIGRTGRA 482 (593)
T ss_pred ccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe--------cC----------CCchhHHHHHHhhccCCC
Confidence 999999999999999999999999999999999999999999 88 888999999999999999
Q ss_pred CC-ceEEEeh
Q psy2470 538 RS-GHVYRKN 546 (858)
Q Consensus 538 g~-G~~~rL~ 546 (858)
|+ |.+|.+|
T Consensus 483 g~~g~Aitfy 492 (593)
T KOG0344|consen 483 GRSGKAITFY 492 (593)
T ss_pred CCCcceEEEe
Confidence 98 9999999
No 63
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.96 E-value=6e-28 Score=297.06 Aligned_cols=305 Identities=16% Similarity=0.094 Sum_probs=190.0
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHH----------HHhCCcC
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFL----------TEMGCRM 274 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~----------~e~g~~~ 274 (858)
-+.|+|||||| .|+.+|.+..... ....+.-....++|+++|||+||.|+.+++. +.+|..+
T Consensus 51 li~APTGSGKT-----laa~Lpil~~l~~---~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~ 122 (876)
T PRK13767 51 LISSPTGSGKT-----LAAFLAIIDELFR---LGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEEL 122 (876)
T ss_pred EEECCCCCcHH-----HHHHHHHHHHHHh---hccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 35799999999 6666664432211 1111111233568999999999999876543 2234443
Q ss_pred -ccEeeeeeEEEeccc------eeecceeEEEeecCccccCCCcc----CCCcccEE------EecCCCCCchhhhhHHH
Q psy2470 275 -DFEYISRGYMFRKGR------MKILVSKIFKMSQGKPSDSGVEP----ISQSYLVE------LSILAPGGQDVIGEDMK 337 (858)
Q Consensus 275 -g~~~~~vG~~vr~~~------~~~~~t~I~v~TpGrLl~~~~~~----~L~~~~vl------R~l~~~~~~d~ll~~lk 337 (858)
+.. ++...+... .....++|+|+||++|..++.++ .+.++.+| .+++..-|. .+...+.
T Consensus 123 ~~i~---v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~-~l~~~L~ 198 (876)
T PRK13767 123 PEIR---VAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGV-HLSLSLE 198 (876)
T ss_pred CCee---EEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHH-HHHHHHH
Confidence 222 332211111 11235799999999997733333 34555555 333300011 1122233
Q ss_pred HHHHHhcccCCCCceEEEEeccc-CHHHHHHHhhcccC--CCCcEEEecCe---ecceeEEEec-----CCccchHHHHH
Q psy2470 338 AFAEQLKPLKRTQLKLIISSATV-DAEEICQFYNISAS--SNATILSVKGH---LYPVSVYYSN-----DPVVNYVQGVV 406 (858)
Q Consensus 338 ~~~~~l~~~~~~~~q~il~SAT~-~~~~~~~~~~~~~~--~~~~~i~v~g~---~~~v~~~~~~-----~~~~~~~~~~~ 406 (858)
.+. ...+++.|.+++|||+ +.+.+++|+..... ...++..+... ...+...... ...........
T Consensus 199 rL~----~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~ 274 (876)
T PRK13767 199 RLE----ELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEALY 274 (876)
T ss_pred HHH----HhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHHHHH
Confidence 333 1234678999999999 77888888763210 01122222221 1122211110 00111112333
Q ss_pred HHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCccc
Q psy2470 407 DTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAE 486 (858)
Q Consensus 407 ~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAe 486 (858)
..+..+... .+++||||||++.++.++..|++.... ...+..+..+||+|++++|..+++.|++|..+|||||+++|
T Consensus 275 ~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~-~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le 351 (876)
T PRK13767 275 ETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPE-EYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLE 351 (876)
T ss_pred HHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchh-hccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHH
Confidence 444444432 578999999999999999999863210 01246789999999999999999999999999999999999
Q ss_pred ccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC----CceEEEeh
Q psy2470 487 TSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR----SGHVYRKN 546 (858)
Q Consensus 487 rgldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g----~G~~~rL~ 546 (858)
+|||||+|++||+ |+ .|.|.++|.||+|||||.+ .|.+|...
T Consensus 352 ~GIDip~Vd~VI~--------~~----------~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 352 LGIDIGYIDLVVL--------LG----------SPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred hcCCCCCCcEEEE--------eC----------CCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 9999999999999 65 5788999999999999863 37877654
No 64
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.95 E-value=5e-28 Score=288.02 Aligned_cols=281 Identities=16% Similarity=0.137 Sum_probs=187.4
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
++++|||||| ++|++|.+.. . ..+||++|+++|+.|....+. ..|...... .+...
T Consensus 45 v~apTGsGKT-----l~y~lpal~~---------~------g~tlVisPl~sL~~dqv~~l~-~~gi~~~~~---~s~~~ 100 (607)
T PRK11057 45 VVMPTGGGKS-----LCYQIPALVL---------D------GLTLVVSPLISLMKDQVDQLL-ANGVAAACL---NSTQT 100 (607)
T ss_pred EEcCCCchHH-----HHHHHHHHHc---------C------CCEEEEecHHHHHHHHHHHHH-HcCCcEEEE---cCCCC
Confidence 4699999999 5566665431 1 147999999999988877764 455443322 11111
Q ss_pred ec------cceeecceeEEEeecCcccc--CCCccCCCcccEE------EecCCCCCchhhhhH--HHHHHHHhcccCCC
Q psy2470 286 RK------GRMKILVSKIFKMSQGKPSD--SGVEPISQSYLVE------LSILAPGGQDVIGED--MKAFAEQLKPLKRT 349 (858)
Q Consensus 286 r~------~~~~~~~t~I~v~TpGrLl~--~~~~~~L~~~~vl------R~l~~~~~~d~ll~~--lk~~~~~l~~~~~~ 349 (858)
+. ........+|+|+||++|+. +.......++.++ ...+ -|.||...+ +..+. ...+
T Consensus 101 ~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~--~G~~fr~~y~~L~~l~-----~~~p 173 (607)
T PRK11057 101 REQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQ--WGHDFRPEYAALGQLR-----QRFP 173 (607)
T ss_pred HHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccccc--ccCcccHHHHHHHHHH-----HhCC
Confidence 10 11122346899999999985 2222222234443 3222 112333222 22222 2236
Q ss_pred CceEEEEecccCHH---HHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcC
Q psy2470 350 QLKLIISSATVDAE---EICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVI 426 (858)
Q Consensus 350 ~~q~il~SAT~~~~---~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~ 426 (858)
+.+++++|||.+.. .+.+.+.. ..|.+.+.....|. ..|....... ....+..++.....+++||||+
T Consensus 174 ~~~~v~lTAT~~~~~~~di~~~l~l----~~~~~~~~~~~r~n-l~~~v~~~~~----~~~~l~~~l~~~~~~~~IIFc~ 244 (607)
T PRK11057 174 TLPFMALTATADDTTRQDIVRLLGL----NDPLIQISSFDRPN-IRYTLVEKFK----PLDQLMRYVQEQRGKSGIIYCN 244 (607)
T ss_pred CCcEEEEecCCChhHHHHHHHHhCC----CCeEEEECCCCCCc-ceeeeeeccc----hHHHHHHHHHhcCCCCEEEEEC
Confidence 78999999999543 23344331 23444443322221 1222111111 1223444444555678999999
Q ss_pred CHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccce
Q psy2470 427 GLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKAR 506 (858)
Q Consensus 427 t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~ 506 (858)
|+++++.+++.|++. ++.+.++||+|++++|.++++.|++|+.+|||||+++++|||+|+|++||+
T Consensus 245 tr~~~e~la~~L~~~-------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~------- 310 (607)
T PRK11057 245 SRAKVEDTAARLQSR-------GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH------- 310 (607)
T ss_pred cHHHHHHHHHHHHhC-------CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE-------
Confidence 999999999999977 889999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh--hhHhh
Q psy2470 507 WFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN--FMYNR 551 (858)
Q Consensus 507 ~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~--~~~~~ 551 (858)
|| .|.|.++|.||+|||||.|. |.|+.+| .++..
T Consensus 311 -~d----------~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~ 347 (607)
T PRK11057 311 -FD----------IPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAW 347 (607)
T ss_pred -eC----------CCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHH
Confidence 66 67889999999999999997 9999999 55433
No 65
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.95 E-value=2.6e-28 Score=293.03 Aligned_cols=286 Identities=16% Similarity=0.117 Sum_probs=182.0
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHH-HHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACS-CTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~-qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
++++||+||| ++|++|.+.. . ..+||++|+++|+. |+.. +. ..|.......++..+.
T Consensus 480 VimPTGSGKS-----LcYQLPAL~~---------~------GiTLVISPLiSLmqDQV~~-L~-~~GI~Aa~L~s~~s~~ 537 (1195)
T PLN03137 480 VLMPTGGGKS-----LTYQLPALIC---------P------GITLVISPLVSLIQDQIMN-LL-QANIPAASLSAGMEWA 537 (1195)
T ss_pred EEcCCCccHH-----HHHHHHHHHc---------C------CcEEEEeCHHHHHHHHHHH-HH-hCCCeEEEEECCCCHH
Confidence 4579999999 7777775541 1 14799999999987 4433 32 2444433331111110
Q ss_pred Eecc---cee--ecceeEEEeecCcccc---CCCcc-CC---C--cccEE----EecCCCCCchhhhhHHHHHHHHhccc
Q psy2470 285 FRKG---RMK--ILVSKIFKMSQGKPSD---SGVEP-IS---Q--SYLVE----LSILAPGGQDVIGEDMKAFAEQLKPL 346 (858)
Q Consensus 285 vr~~---~~~--~~~t~I~v~TpGrLl~---~~~~~-~L---~--~~~vl----R~l~~~~~~d~ll~~lk~~~~~l~~~ 346 (858)
-+.. ... ....+|+|+||++|.. +.... .+ . .+-|| .+.+ -|.||-..+.+ +. .++ .
T Consensus 538 eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSq--WGhDFRpdYr~-L~-~Lr-~ 612 (1195)
T PLN03137 538 EQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQ--WGHDFRPDYQG-LG-ILK-Q 612 (1195)
T ss_pred HHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhh--cccchHHHHHH-HH-HHH-H
Confidence 0000 001 1347999999999863 11111 11 1 22233 3333 11234332221 11 111 2
Q ss_pred CCCCceEEEEecccCHH---HHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhh-CCCCCEE
Q psy2470 347 KRTQLKLIISSATVDAE---EICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHES-MPVGDIL 422 (858)
Q Consensus 347 ~~~~~q~il~SAT~~~~---~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~-~~~g~iL 422 (858)
.-++.++++||||+... .+.+.+.. ..+++...+...| ..+|...+... .....+..++.. ...+..|
T Consensus 613 ~fp~vPilALTATAT~~V~eDI~~~L~l----~~~~vfr~Sf~Rp-NL~y~Vv~k~k---k~le~L~~~I~~~~~~esgI 684 (1195)
T PLN03137 613 KFPNIPVLALTATATASVKEDVVQALGL----VNCVVFRQSFNRP-NLWYSVVPKTK---KCLEDIDKFIKENHFDECGI 684 (1195)
T ss_pred hCCCCCeEEEEecCCHHHHHHHHHHcCC----CCcEEeecccCcc-ceEEEEeccch---hHHHHHHHHHHhcccCCCce
Confidence 23567899999999432 35555542 2233333222112 23333222111 112233333332 2356789
Q ss_pred EEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCC
Q psy2470 423 AFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGF 502 (858)
Q Consensus 423 VFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~ 502 (858)
|||+++.+++.+++.|++. |+.+.++||+|++++|..+++.|.+|+.+|||||+++++|||+|+|++||+
T Consensus 685 IYC~SRke~E~LAe~L~~~-------Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH--- 754 (1195)
T PLN03137 685 IYCLSRMDCEKVAERLQEF-------GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH--- 754 (1195)
T ss_pred eEeCchhHHHHHHHHHHHC-------CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEE---
Confidence 9999999999999999977 899999999999999999999999999999999999999999999999999
Q ss_pred ccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh--hhHhh
Q psy2470 503 VKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN--FMYNR 551 (858)
Q Consensus 503 ~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~--~~~~~ 551 (858)
|+ .|.|.++|.||+|||||.|. |.|+.+| .++..
T Consensus 755 -----yd----------lPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~ 791 (1195)
T PLN03137 755 -----HS----------LPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIR 791 (1195)
T ss_pred -----cC----------CCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHH
Confidence 66 78889999999999999996 9999999 45543
No 66
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.95 E-value=6.1e-28 Score=301.31 Aligned_cols=296 Identities=16% Similarity=0.106 Sum_probs=185.8
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCC---CC-CCccCEEEccchHHHHHHHHHHHHH---H-------hC
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMG---VG-DKARPTIVRSSIDVACSCTVVEFLT---E-------MG 271 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g---~g-~~~~~~LVl~PtR~la~qva~~v~~---e-------~g 271 (858)
++|+|||||| .|+.+|.+...+. +...+ .+ ....++|+++|+++|+.|+.+++.. + +|
T Consensus 1 V~APTGSGKT-----LAA~LpaL~~Ll~---~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g 72 (1490)
T PRK09751 1 VIAPTGSGKT-----LAAFLYALDRLFR---EGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRG 72 (1490)
T ss_pred CcCCCCcHHH-----HHHHHHHHHHHHh---cccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 4799999999 7777775543221 11100 01 1235689999999999999877632 1 11
Q ss_pred C-cCccEeeeeeEEEeccc------eeecceeEEEeecCcccc-CCCc--cCCCcccEE------EecCCCCCchhhhhH
Q psy2470 272 C-RMDFEYISRGYMFRKGR------MKILVSKIFKMSQGKPSD-SGVE--PISQSYLVE------LSILAPGGQDVIGED 335 (858)
Q Consensus 272 ~-~~g~~~~~vG~~vr~~~------~~~~~t~I~v~TpGrLl~-~~~~--~~L~~~~vl------R~l~~~~~~d~ll~~ 335 (858)
. ..+.. |+...+... ...+.++|+|+||++|.. +.+. ..++++.+| .+++..-|..+.+.
T Consensus 73 ~~~~~i~---V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~- 148 (1490)
T PRK09751 73 ETEVNLR---VGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALS- 148 (1490)
T ss_pred cccCceE---EEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHH-
Confidence 1 22333 442222111 112357999999999987 3322 246666655 44440011222222
Q ss_pred HHHHHHHhcccCCCCceEEEEeccc-CHHHHHHHhhcccCCCCcEEEe-cC--eecceeEEEecCCccch----------
Q psy2470 336 MKAFAEQLKPLKRTQLKLIISSATV-DAEEICQFYNISASSNATILSV-KG--HLYPVSVYYSNDPVVNY---------- 401 (858)
Q Consensus 336 lk~~~~~l~~~~~~~~q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v-~g--~~~~v~~~~~~~~~~~~---------- 401 (858)
+..+. ...+.+.|+|.+|||+ +.+.+++|+.. +.++..+ +. +..+++++.......+.
T Consensus 149 LeRL~----~l~~~~~QrIgLSATI~n~eevA~~L~g----~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~ 220 (1490)
T PRK09751 149 LERLD----ALLHTSAQRIGLSATVRSASDVAAFLGG----DRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGED 220 (1490)
T ss_pred HHHHH----HhCCCCCeEEEEEeeCCCHHHHHHHhcC----CCCEEEECCCCCcccceEEEEecCchhhccccccccccc
Confidence 23333 1335678999999999 88899999873 2222222 11 12233322211100000
Q ss_pred -----HH----HHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCC--------------------------C
Q psy2470 402 -----VQ----GVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQR--------------------------E 446 (858)
Q Consensus 402 -----~~----~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~--------------------------~ 446 (858)
.. .....++..+. ..+++|||+||+..++.++..|++..... +
T Consensus 221 ~~~~r~~~i~~~v~~~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1490)
T PRK09751 221 SHAGREGSIWPYIETGILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQS 298 (1490)
T ss_pred cchhhhhhhhHHHHHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhcccc
Confidence 00 11111222222 35789999999999999999998542100 0
Q ss_pred CcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhh
Q psy2470 447 DLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKAS 526 (858)
Q Consensus 447 ~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~ 526 (858)
...+.+..+||+|++++|..+++.|++|+.++||||+.+|+||||++|++||+ |+ .|.|.++
T Consensus 299 ~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq--------~g----------sP~sVas 360 (1490)
T PRK09751 299 SDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ--------VA----------TPLSVAS 360 (1490)
T ss_pred ccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE--------eC----------CCCCHHH
Confidence 01234778999999999999999999999999999999999999999999999 55 6889999
Q ss_pred HHHhhcccCCCCCce
Q psy2470 527 AVQRAGRAGRVRSGH 541 (858)
Q Consensus 527 ~~qR~GRaGR~g~G~ 541 (858)
|.||+|||||...|.
T Consensus 361 ~LQRiGRAGR~~gg~ 375 (1490)
T PRK09751 361 GLQRIGRAGHQVGGV 375 (1490)
T ss_pred HHHHhCCCCCCCCCc
Confidence 999999999974443
No 67
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.95 E-value=4.7e-27 Score=292.22 Aligned_cols=282 Identities=13% Similarity=0.064 Sum_probs=184.3
Q ss_pred cccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeee
Q psy2470 201 PYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYIS 280 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~ 280 (858)
|--.-+.|+||||||.+++++|+..- . ...+++|++||++||.|+++.+.+.++ ..+..
T Consensus 621 ~~d~Ll~a~TGsGKT~val~aa~~~~------------~-----~g~qvlvLvPT~eLA~Q~~~~f~~~~~-~~~v~--- 679 (1147)
T PRK10689 621 AMDRLVCGDVGFGKTEVAMRAAFLAV------------E-----NHKQVAVLVPTTLLAQQHYDNFRDRFA-NWPVR--- 679 (1147)
T ss_pred CCCEEEEcCCCcCHHHHHHHHHHHHH------------H-----cCCeEEEEeCcHHHHHHHHHHHHHhhc-cCCce---
Confidence 33456789999999987777776431 1 123689999999999999998865443 22222
Q ss_pred eeEEEeccce----------eecceeEEEeecCccccCCCccCCCcccEEEecCCCCCchhhhhHHHHHHHHhcccCCCC
Q psy2470 281 RGYMFRKGRM----------KILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 281 vG~~vr~~~~----------~~~~t~I~v~TpGrLl~~~~~~~L~~~~vlR~l~~~~~~d~ll~~lk~~~~~l~~~~~~~ 350 (858)
++...++... ....++|+|+||+.+- .+..++++.++ -+| |...|-......+. ..+++
T Consensus 680 i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~---~~v~~~~L~lL-VID--EahrfG~~~~e~lk-----~l~~~ 748 (1147)
T PRK10689 680 IEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ---SDVKWKDLGLL-IVD--EEHRFGVRHKERIK-----AMRAD 748 (1147)
T ss_pred EEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh---CCCCHhhCCEE-EEe--chhhcchhHHHHHH-----hcCCC
Confidence 2222222111 1134799999997542 22234444443 001 11111122222222 45678
Q ss_pred ceEEEEecccCHH--HHHHHhhcccCCCCcEEEecCe-ecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCC
Q psy2470 351 LKLIISSATVDAE--EICQFYNISASSNATILSVKGH-LYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIG 427 (858)
Q Consensus 351 ~q~il~SAT~~~~--~~~~~~~~~~~~~~~~i~v~g~-~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t 427 (858)
.|+++||||+... .++..... ++.++..+.. ..+++.++..... ...+...+..+. ..|+++||+|+
T Consensus 749 ~qvLl~SATpiprtl~l~~~gl~----d~~~I~~~p~~r~~v~~~~~~~~~---~~~k~~il~el~---r~gqv~vf~n~ 818 (1147)
T PRK10689 749 VDILTLTATPIPRTLNMAMSGMR----DLSIIATPPARRLAVKTFVREYDS---LVVREAILREIL---RGGQVYYLYND 818 (1147)
T ss_pred CcEEEEcCCCCHHHHHHHHhhCC----CcEEEecCCCCCCCceEEEEecCc---HHHHHHHHHHHh---cCCeEEEEECC
Confidence 9999999998443 33333322 4555554432 2456655443211 111112222222 25899999999
Q ss_pred HHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCcccee
Q psy2470 428 LEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARW 507 (858)
Q Consensus 428 ~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~ 507 (858)
.+.++.+++.|++. .+++.+..+||+|++++|.+++++|++|+.+|||||||+|||||||+|++||.
T Consensus 819 i~~ie~la~~L~~~-----~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi-------- 885 (1147)
T PRK10689 819 VENIQKAAERLAEL-----VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII-------- 885 (1147)
T ss_pred HHHHHHHHHHHHHh-----CCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE--------
Confidence 99999999999965 24678999999999999999999999999999999999999999999999993
Q ss_pred ccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 508 FNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 508 yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+++.. -+-++|.||+||+||.|. |.||.++
T Consensus 886 ~~ad~---------fglaq~~Qr~GRvGR~g~~g~a~ll~ 916 (1147)
T PRK10689 886 ERADH---------FGLAQLHQLRGRVGRSHHQAYAWLLT 916 (1147)
T ss_pred ecCCC---------CCHHHHHHHhhccCCCCCceEEEEEe
Confidence 11110 012468999999999987 9999887
No 68
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.94 E-value=1.4e-26 Score=282.50 Aligned_cols=282 Identities=16% Similarity=0.113 Sum_probs=185.4
Q ss_pred cchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeee
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRG 282 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG 282 (858)
..-+.|+||||||.+++++++..- .. | .++++++||++||.|.++.+.+.++ ..+.. ++
T Consensus 474 d~Ll~adTGsGKT~val~a~l~al------------~~--g---~qvlvLvPT~~LA~Q~~~~f~~~~~-~~~i~---v~ 532 (926)
T TIGR00580 474 DRLVCGDVGFGKTEVAMRAAFKAV------------LD--G---KQVAVLVPTTLLAQQHFETFKERFA-NFPVT---IE 532 (926)
T ss_pred CEEEECCCCccHHHHHHHHHHHHH------------Hh--C---CeEEEEeCcHHHHHHHHHHHHHHhc-cCCcE---EE
Confidence 345789999999966666554311 11 1 3689999999999999998865543 23333 32
Q ss_pred EEEeccc---e-------eecceeEEEeecCccccCCCccCCCcccEEEecCCCCCchhhhhHHHHHHHHhcccCCCCce
Q psy2470 283 YMFRKGR---M-------KILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLKRTQLK 352 (858)
Q Consensus 283 ~~vr~~~---~-------~~~~t~I~v~TpGrLl~~~~~~~L~~~~vlR~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q 352 (858)
...++.. . ....++|+|+||. ++. .+..++++.++ -.||...|-....+.+. ..+++.|
T Consensus 533 ~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~-ll~--~~v~f~~L~ll---VIDEahrfgv~~~~~L~-----~~~~~~~ 601 (926)
T TIGR00580 533 LLSRFRSAKEQNEILKELASGKIDILIGTHK-LLQ--KDVKFKDLGLL---IIDEEQRFGVKQKEKLK-----ELRTSVD 601 (926)
T ss_pred EEeccccHHHHHHHHHHHHcCCceEEEchHH-Hhh--CCCCcccCCEE---EeecccccchhHHHHHH-----hcCCCCC
Confidence 2222211 0 1124799999994 432 33344544444 00011111122233333 3456789
Q ss_pred EEEEecccCHHHHHHHhhcccCCCCcEEEec-CeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHH
Q psy2470 353 LIISSATVDAEEICQFYNISASSNATILSVK-GHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQI 431 (858)
Q Consensus 353 ~il~SAT~~~~~~~~~~~~~~~~~~~~i~v~-g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i 431 (858)
+++||||+....+...+.. ..++.++..+ ....|++.++..... ......+...+. ..++++||+|+.+++
T Consensus 602 vL~~SATpiprtl~~~l~g--~~d~s~I~~~p~~R~~V~t~v~~~~~----~~i~~~i~~el~--~g~qv~if~n~i~~~ 673 (926)
T TIGR00580 602 VLTLSATPIPRTLHMSMSG--IRDLSIIATPPEDRLPVRTFVMEYDP----ELVREAIRRELL--RGGQVFYVHNRIESI 673 (926)
T ss_pred EEEEecCCCHHHHHHHHhc--CCCcEEEecCCCCccceEEEEEecCH----HHHHHHHHHHHH--cCCeEEEEECCcHHH
Confidence 9999999865554432211 0134444433 223567766553221 111222222222 368999999999999
Q ss_pred HHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCC
Q psy2470 432 EHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPN 511 (858)
Q Consensus 432 ~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~ 511 (858)
+.+++.|++. .+++.+..+||+|++++|.+++++|++|+.+|||||+|+|+|||||+|++||+ |++.
T Consensus 674 e~l~~~L~~~-----~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi--------~~a~ 740 (926)
T TIGR00580 674 EKLATQLREL-----VPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII--------ERAD 740 (926)
T ss_pred HHHHHHHHHh-----CCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE--------ecCC
Confidence 9999999975 24789999999999999999999999999999999999999999999999998 4432
Q ss_pred CCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 512 TLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 512 ~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
. -+-++|.||+||+||.|. |.||.++
T Consensus 741 ~---------~gls~l~Qr~GRvGR~g~~g~aill~ 767 (926)
T TIGR00580 741 K---------FGLAQLYQLRGRVGRSKKKAYAYLLY 767 (926)
T ss_pred C---------CCHHHHHHHhcCCCCCCCCeEEEEEE
Confidence 1 123578899999999987 9999988
No 69
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.94 E-value=3.3e-27 Score=285.80 Aligned_cols=105 Identities=30% Similarity=0.426 Sum_probs=102.1
Q ss_pred ccceeeccCHHHHhccccCCCcccccCChhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccCCCcchH
Q psy2470 41 SRKFSRLYTEASFSQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVNGNLTKP 120 (858)
Q Consensus 41 ~g~c~rLy~~~~~~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~~lt~~ 120 (858)
+|+||||||+++|+.|+++++|||+|+||+++||+||+||+.|+.+|+|+||||.+++++|++.|+.+||+|++|+|| +
T Consensus 329 ~G~cyrL~t~~~~~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~~~L~~lgald~~g~lT-~ 407 (812)
T PRK11664 329 PGICLHLYSKEQAERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLLQQLGALDGQGRLT-A 407 (812)
T ss_pred CcEEEEecCHHHHhhCccCCCCceeccchHHHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCcC-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred HHhhhhcCCCCchhhhHHhhcccccc
Q psy2470 121 VGETMAEMPLHPIHAKVLLSSGSVLD 146 (858)
Q Consensus 121 lG~~ma~lp~~p~~~~~l~~s~s~~~ 146 (858)
+|++|++||+||++|+|||.+.++++
T Consensus 408 ~G~~m~~lp~~Prla~~ll~a~~~~~ 433 (812)
T PRK11664 408 RGRKMAALGNDPRLAAMLVAAKEDDE 433 (812)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhcCc
Confidence 99999999999999999999877654
No 70
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.93 E-value=6.9e-26 Score=272.61 Aligned_cols=309 Identities=13% Similarity=0.102 Sum_probs=190.0
Q ss_pred ccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEcc
Q psy2470 174 EMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRS 253 (858)
Q Consensus 174 e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~ 253 (858)
...|.++..|...+ ..+...++.+. |-..-+.|+||||||+ ++.+|.+... .. ..++++++
T Consensus 257 ~l~f~lt~~Q~~ai-~~I~~d~~~~~-~~~~Ll~~~TGSGKT~-----va~~~il~~~-------~~-----g~q~lila 317 (681)
T PRK10917 257 SLPFELTGAQKRVV-AEILADLASPK-PMNRLLQGDVGSGKTV-----VAALAALAAI-------EA-----GYQAALMA 317 (681)
T ss_pred hCCCCCCHHHHHHH-HHHHHhhhccC-CceEEEECCCCCcHHH-----HHHHHHHHHH-------Hc-----CCeEEEEe
Confidence 35666655544222 22333333221 4455668999999994 4444433211 11 23689999
Q ss_pred chHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccc----------eeecceeEEEeecCccccCCCccCCCcccEEEec
Q psy2470 254 SIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGR----------MKILVSKIFKMSQGKPSDSGVEPISQSYLVELSI 323 (858)
Q Consensus 254 PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~----------~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vlR~l 323 (858)
||++||.|+++.+.+.+ ...|.. ++...+... .....++|+|+|||++.+ ...+.++.++ -+
T Consensus 318 PT~~LA~Q~~~~l~~l~-~~~~i~---v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~---~v~~~~l~lv-VI 389 (681)
T PRK10917 318 PTEILAEQHYENLKKLL-EPLGIR---VALLTGSLKGKERREILEAIASGEADIVIGTHALIQD---DVEFHNLGLV-II 389 (681)
T ss_pred ccHHHHHHHHHHHHHHH-hhcCcE---EEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc---cchhcccceE-EE
Confidence 99999999998875443 223333 333333222 112358999999998865 1223444433 00
Q ss_pred CCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccCHHHHHHH-hhcccCCCCcEEE-ecCeecceeEEEecCCccch
Q psy2470 324 LAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVDAEEICQF-YNISASSNATILS-VKGHLYPVSVYYSNDPVVNY 401 (858)
Q Consensus 324 ~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~~~~~~~~-~~~~~~~~~~~i~-v~g~~~~v~~~~~~~~~~~~ 401 (858)
| |...|.......+. ......++++||||.....++.. ++. .+...+. .+....|++..+.....
T Consensus 390 D--E~Hrfg~~qr~~l~-----~~~~~~~iL~~SATp~prtl~~~~~g~---~~~s~i~~~p~~r~~i~~~~~~~~~--- 456 (681)
T PRK10917 390 D--EQHRFGVEQRLALR-----EKGENPHVLVMTATPIPRTLAMTAYGD---LDVSVIDELPPGRKPITTVVIPDSR--- 456 (681)
T ss_pred e--chhhhhHHHHHHHH-----hcCCCCCEEEEeCCCCHHHHHHHHcCC---CceEEEecCCCCCCCcEEEEeCccc---
Confidence 1 11111122222222 22345789999999865554432 221 0112221 12223456665554322
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEcCC--------HHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCC
Q psy2470 402 VQGVVDTAIKIHESMPVGDILAFVIG--------LEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPR 473 (858)
Q Consensus 402 ~~~~~~~l~~i~~~~~~g~iLVFl~t--------~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~ 473 (858)
.+..++.+.... ...++++||||. ...++.+++.|.+. .+++.+..+||+|++++|.++++.|++
T Consensus 457 ~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~-----~~~~~v~~lHG~m~~~eR~~i~~~F~~ 529 (681)
T PRK10917 457 RDEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEA-----FPELRVGLLHGRMKPAEKDAVMAAFKA 529 (681)
T ss_pred HHHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHH-----CCCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 223334444333 235789999995 34556677777754 125789999999999999999999999
Q ss_pred CcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 474 AMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 474 g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+.+|||||+++|+|+|||++++||+ ||+.. -+.+++.||+||+||.|. |.||.++
T Consensus 530 g~~~ILVaT~vie~GiDip~v~~VIi--------~~~~r---------~gls~lhQ~~GRvGR~g~~g~~ill~ 586 (681)
T PRK10917 530 GEIDILVATTVIEVGVDVPNATVMVI--------ENAER---------FGLAQLHQLRGRVGRGAAQSYCVLLY 586 (681)
T ss_pred CCCCEEEECcceeeCcccCCCcEEEE--------eCCCC---------CCHHHHHHHhhcccCCCCceEEEEEE
Confidence 99999999999999999999999999 55321 124678899999999986 9999987
No 71
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.93 E-value=7e-27 Score=282.32 Aligned_cols=105 Identities=32% Similarity=0.457 Sum_probs=102.2
Q ss_pred ccceeeccCHHHHhccccCCCcccccCChhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccCCCcchH
Q psy2470 41 SRKFSRLYTEASFSQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVNGNLTKP 120 (858)
Q Consensus 41 ~g~c~rLy~~~~~~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~~lt~~ 120 (858)
+|+||||||+++|+.|.+++.|||+|+||++++|+||+||+.|+.+|+|+||||.+++.+|++.|+.+||+|++|+|| +
T Consensus 326 ~G~cyrL~t~~~~~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~~~L~~lgald~~~~lT-~ 404 (819)
T TIGR01970 326 PGVCYRLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAARQLLQRLGALDAQGRLT-A 404 (819)
T ss_pred CCEEEEeCCHHHHHhhhcCCCcceeccCcHHHHHHHHHcCCCChhhCCCCCCcCHHHHHHHHHHHHHCCCCCCCCCcC-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred HHhhhhcCCCCchhhhHHhhcccccc
Q psy2470 121 VGETMAEMPLHPIHAKVLLSSGSVLD 146 (858)
Q Consensus 121 lG~~ma~lp~~p~~~~~l~~s~s~~~ 146 (858)
+|++|++||+||++|+||+.+..++|
T Consensus 405 ~G~~~~~lp~~p~l~~~ll~~~~~~~ 430 (819)
T TIGR01970 405 HGKAMAALGCHPRLAAMLLSAHSTGL 430 (819)
T ss_pred HHHHHHhcCCCHHHHHHHHHhhhcCC
Confidence 99999999999999999999877764
No 72
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.93 E-value=5e-26 Score=255.46 Aligned_cols=286 Identities=14% Similarity=0.094 Sum_probs=169.8
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeee---
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRG--- 282 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG--- 282 (858)
+.|+||||||.+ +.+|.+. .+.. + ...+++++.|+|+++.|+++++.+.+|..+|..++..-
T Consensus 4 i~apTGsGKT~~-----~~~~~l~----~~~~---~---~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~ 68 (358)
T TIGR01587 4 IEAPTGYGKTEA-----ALLWALH----SIKS---Q---KADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKR 68 (358)
T ss_pred EEeCCCCCHHHH-----HHHHHHH----HHhh---C---CCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHH
Confidence 579999999943 3333221 1111 1 11257999999999999999998777765543311110
Q ss_pred EEEec-----cce---------eecceeEEEeecCcccc-CCCcc---C--C----CcccEE----EecCCCCCchhhhh
Q psy2470 283 YMFRK-----GRM---------KILVSKIFKMSQGKPSD-SGVEP---I--S----QSYLVE----LSILAPGGQDVIGE 334 (858)
Q Consensus 283 ~~vr~-----~~~---------~~~~t~I~v~TpGrLl~-~~~~~---~--L----~~~~vl----R~l~~~~~~d~ll~ 334 (858)
+.... +.. ......|+++||+.++. +..+. . + .++-|+ ++.+ .+.+++..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~--~~~~~l~~ 146 (358)
T TIGR01587 69 IKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDE--YTLALILA 146 (358)
T ss_pred HhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCH--HHHHHHHH
Confidence 00000 000 00135799999999988 44311 0 1 123344 3333 11122222
Q ss_pred HHHHHHHHhcccCCCCceEEEEecccCHHHHHHHhhcccCCCCcEEEecCeec-ce-eEEE--ecCCccchHHHHHHHHH
Q psy2470 335 DMKAFAEQLKPLKRTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLY-PV-SVYY--SNDPVVNYVQGVVDTAI 410 (858)
Q Consensus 335 ~lk~~~~~l~~~~~~~~q~il~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~-~v-~~~~--~~~~~~~~~~~~~~~l~ 410 (858)
+++.+. +.+.|+++||||++ +.+.+++..... .......+.... .. ...+ .......... ....+.
T Consensus 147 ~l~~l~-------~~~~~~i~~SATlp-~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~ 216 (358)
T TIGR01587 147 VLEVLK-------DNDVPILLMSATLP-KFLKEYAEKIGY-VEFNEPLDLKEERRFERHRFIKIESDKVGEIS-SLERLL 216 (358)
T ss_pred HHHHHH-------HcCCCEEEEecCch-HHHHHHHhcCCC-cccccCCCCccccccccccceeeccccccCHH-HHHHHH
Confidence 222221 35689999999995 445555542100 000000010000 00 0111 1111111111 122222
Q ss_pred HHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHH----hcCCCCCCcEEEEEecCccc
Q psy2470 411 KIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIK----VFRPTPRAMRKIVIATNIAE 486 (858)
Q Consensus 411 ~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~----v~~~f~~g~~kVlvATdvAe 486 (858)
+.. ..++++|||++|+++++.+++.|++.. ++..+..+||++++.+|.+ +++.|++|+.+||||||++|
T Consensus 217 ~~~--~~~~~~lVf~~t~~~~~~~~~~L~~~~-----~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~ 289 (358)
T TIGR01587 217 EFI--KKGGKIAIIVNTVDRAQEFYQQLKENA-----PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIE 289 (358)
T ss_pred HHh--hCCCeEEEEECCHHHHHHHHHHHHhhc-----CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchh
Confidence 222 246899999999999999999998651 2457999999999999976 48899999999999999999
Q ss_pred ccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC--c---eEEEeh
Q psy2470 487 TSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS--G---HVYRKN 546 (858)
Q Consensus 487 rgldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~--G---~~~rL~ 546 (858)
+|+||+ +++||+ |+ .+.++|+||+||+||.|+ | .+|-++
T Consensus 290 ~GiDi~-~~~vi~--------~~------------~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~ 333 (358)
T TIGR01587 290 ASLDIS-ADVMIT--------EL------------APIDSLIQRLGRLHRYGRKNGENFEVYIIT 333 (358)
T ss_pred ceeccC-CCEEEE--------cC------------CCHHHHHHHhccccCCCCCCCCCCeEEEEe
Confidence 999995 788888 43 346789999999999875 3 566655
No 73
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.93 E-value=5.7e-26 Score=270.86 Aligned_cols=282 Identities=16% Similarity=0.109 Sum_probs=181.8
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.++|||||| .++++|.+.. .| .++|++|+++|+.|...++ +++|..+....+++....
T Consensus 33 v~~PTG~GKT-----l~y~lpal~~---------~g------~~lVisPl~sL~~dq~~~l-~~~gi~~~~~~s~~~~~~ 91 (591)
T TIGR01389 33 VVMPTGGGKS-----LCYQVPALLL---------KG------LTVVISPLISLMKDQVDQL-RAAGVAAAYLNSTLSAKE 91 (591)
T ss_pred EEcCCCccHh-----HHHHHHHHHc---------CC------cEEEEcCCHHHHHHHHHHH-HHcCCcEEEEeCCCCHHH
Confidence 4699999999 5566665431 11 3699999999998877766 445654332211111000
Q ss_pred ec---cceeecceeEEEeecCcccc--CCCccCCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 286 RK---GRMKILVSKIFKMSQGKPSD--SGVEPISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 286 r~---~~~~~~~t~I~v~TpGrLl~--~~~~~~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
+. ........+|+|+||++|.. ........+++++ ..+. .-|.||-..+.+. . .+. ..-+..++++
T Consensus 92 ~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~-~~g~~frp~y~~l-~-~l~-~~~~~~~vi~ 167 (591)
T TIGR01389 92 QQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVS-QWGHDFRPEYQRL-G-SLA-ERFPQVPRIA 167 (591)
T ss_pred HHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccc-cccCccHHHHHHH-H-HHH-HhCCCCCEEE
Confidence 00 00112346899999999976 2222222344433 2222 1123443332221 1 111 1123445999
Q ss_pred EecccCHH---HHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHH
Q psy2470 356 SSATVDAE---EICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIE 432 (858)
Q Consensus 356 ~SAT~~~~---~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~ 432 (858)
+|||.+.. .+.+++.. ..+.+.+.+-. ....+|......+ ....+...+.....++.||||+|+++++
T Consensus 168 lTAT~~~~~~~~i~~~l~~----~~~~~~~~~~~-r~nl~~~v~~~~~----~~~~l~~~l~~~~~~~~IIf~~sr~~~e 238 (591)
T TIGR01389 168 LTATADAETRQDIRELLRL----ADANEFITSFD-RPNLRFSVVKKNN----KQKFLLDYLKKHRGQSGIIYASSRKKVE 238 (591)
T ss_pred EEeCCCHHHHHHHHHHcCC----CCCCeEecCCC-CCCcEEEEEeCCC----HHHHHHHHHHhcCCCCEEEEECcHHHHH
Confidence 99999543 34455542 12222222211 1122232211122 2233444444444678999999999999
Q ss_pred HHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCC
Q psy2470 433 HIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNT 512 (858)
Q Consensus 433 ~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~ 512 (858)
.+++.|... ++.+.++||+|++++|..+++.|.+|..+|||||+++++|||+|+|++||+ |+
T Consensus 239 ~la~~L~~~-------g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~--------~~--- 300 (591)
T TIGR01389 239 ELAERLESQ-------GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH--------YD--- 300 (591)
T ss_pred HHHHHHHhC-------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE--------cC---
Confidence 999999876 888999999999999999999999999999999999999999999999999 66
Q ss_pred CCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 513 LTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 513 g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
.|.|.++|.||+|||||.|. |.|+.+|
T Consensus 301 -------~p~s~~~y~Q~~GRaGR~G~~~~~il~~ 328 (591)
T TIGR01389 301 -------MPGNLESYYQEAGRAGRDGLPAEAILLY 328 (591)
T ss_pred -------CCCCHHHHhhhhccccCCCCCceEEEec
Confidence 57889999999999999996 9999888
No 74
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.93 E-value=1e-25 Score=269.45 Aligned_cols=316 Identities=13% Similarity=0.078 Sum_probs=186.9
Q ss_pred ccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEcc
Q psy2470 174 EMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRS 253 (858)
Q Consensus 174 e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~ 253 (858)
...|.+...|...+ ..+...+... .|-..-+.|+||||||++++.+++.. + +. ..++++++
T Consensus 231 ~lpf~lt~~Q~~ai-~~I~~~~~~~-~~~~~Ll~g~TGSGKT~va~l~il~~---------~---~~-----g~qvlila 291 (630)
T TIGR00643 231 SLPFKLTRAQKRVV-KEILQDLKSD-VPMNRLLQGDVGSGKTLVAALAMLAA---------I---EA-----GYQVALMA 291 (630)
T ss_pred hCCCCCCHHHHHHH-HHHHHHhccC-CCccEEEECCCCCcHHHHHHHHHHHH---------H---Hc-----CCcEEEEC
Confidence 45565555443222 1222233222 24455678999999994443322221 1 11 13689999
Q ss_pred chHHHHHHHHHHHHHHh---CCcCccEeeeeeEEEe---ccceeecceeEEEeecCccccCCCccCCCcccEEEecCCCC
Q psy2470 254 SIDVACSCTVVEFLTEM---GCRMDFEYISRGYMFR---KGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPG 327 (858)
Q Consensus 254 PtR~la~qva~~v~~e~---g~~~g~~~~~vG~~vr---~~~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vlR~l~~~~ 327 (858)
||++||.|+++.+.+.+ |.+++..+|++.-.-+ ........++|+|+||+++.+ +..+.++.++ -+| |
T Consensus 292 PT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~---~~~~~~l~lv-VID--E 365 (630)
T TIGR00643 292 PTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE---KVEFKRLALV-IID--E 365 (630)
T ss_pred CHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc---cccccccceE-EEe--c
Confidence 99999999998876543 3443333111110000 001112347999999998865 1223444444 001 0
Q ss_pred CchhhhhHHHHHHHHhcccCCCCceEEEEecccCHHHHHHH-hhcccCCCCcEE-EecCeecceeEEEecCCccchHHHH
Q psy2470 328 GQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVDAEEICQF-YNISASSNATIL-SVKGHLYPVSVYYSNDPVVNYVQGV 405 (858)
Q Consensus 328 ~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~~~~~~~~-~~~~~~~~~~~i-~v~g~~~~v~~~~~~~~~~~~~~~~ 405 (858)
...|-......+.+.. ......|+++||||.....++.. ++.. +...+ ..+....|+..++..... .+..
T Consensus 366 aH~fg~~qr~~l~~~~--~~~~~~~~l~~SATp~prtl~l~~~~~l---~~~~i~~~p~~r~~i~~~~~~~~~---~~~~ 437 (630)
T TIGR00643 366 QHRFGVEQRKKLREKG--QGGFTPHVLVMSATPIPRTLALTVYGDL---DTSIIDELPPGRKPITTVLIKHDE---KDIV 437 (630)
T ss_pred hhhccHHHHHHHHHhc--ccCCCCCEEEEeCCCCcHHHHHHhcCCc---ceeeeccCCCCCCceEEEEeCcch---HHHH
Confidence 0111111112222110 10125789999999855544432 2200 11122 122223466665544321 1223
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCH--------HHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEE
Q psy2470 406 VDTAIKIHESMPVGDILAFVIGL--------EQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRK 477 (858)
Q Consensus 406 ~~~l~~i~~~~~~g~iLVFl~t~--------~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~k 477 (858)
...+.+... ..++++||+|.. ..++.+++.|.+.. +++.+..+||+|++++|.++++.|++|+.+
T Consensus 438 ~~~i~~~l~--~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~-----~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ 510 (630)
T TIGR00643 438 YEFIEEEIA--KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF-----PKYNVGLLHGRMKSDEKEAVMEEFREGEVD 510 (630)
T ss_pred HHHHHHHHH--hCCcEEEEEccccccccchHHHHHHHHHHHHhhC-----CCCcEEEEeCCCCHHHHHHHHHHHHcCCCC
Confidence 333332222 357899999975 45666777776541 378899999999999999999999999999
Q ss_pred EEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 478 IVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 478 VlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|||||+++|+|||+|++++||+ ||+.. -+.+++.||+||+||.|. |.||.++
T Consensus 511 ILVaT~vie~GvDiP~v~~VIi--------~~~~r---------~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 511 ILVATTVIEVGVDVPNATVMVI--------EDAER---------FGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred EEEECceeecCcccCCCcEEEE--------eCCCc---------CCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 9999999999999999999999 55321 135678899999999986 9999987
No 75
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.91 E-value=1e-23 Score=252.47 Aligned_cols=407 Identities=15% Similarity=0.142 Sum_probs=253.5
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHH--HHhCCcCccEeeee
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFL--TEMGCRMDFEYISR 281 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~--~e~g~~~g~~~~~v 281 (858)
+-+.||||||||+.+ .+.++.....| ...++=++|+|.||.+.++++. +++|.+++.. .
T Consensus 50 ~li~aPTgsGKTlIA------------~lai~~~l~~~----~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~---T 110 (766)
T COG1204 50 VLISAPTGSGKTLIA------------LLAILSTLLEG----GGKVVYIVPLKALAEEKYEEFSRLEELGIRVGIS---T 110 (766)
T ss_pred EEEEcCCCCchHHHH------------HHHHHHHHHhc----CCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEe---c
Confidence 346799999999111 11111111111 2246889999999999999997 5677776655 4
Q ss_pred eEEEeccceeecceeEEEeecCcccc-CCCcc-CCCcccEE-----EecCCCCCch----hhhhHHHHHHHHhcccCCCC
Q psy2470 282 GYMFRKGRMKILVSKIFKMSQGKPSD-SGVEP-ISQSYLVE-----LSILAPGGQD----VIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 282 G~~vr~~~~~~~~t~I~v~TpGrLl~-~~~~~-~L~~~~vl-----R~l~~~~~~d----~ll~~lk~~~~~l~~~~~~~ 350 (858)
|- .+.....-..++|+|+||-.+-- ..+.+ .+..++++ .++. .+ .+..+...+. ...+.
T Consensus 111 gD-~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~----d~~RG~~lE~iv~r~~-----~~~~~ 180 (766)
T COG1204 111 GD-YDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLG----DRTRGPVLESIVARMR-----RLNEL 180 (766)
T ss_pred CC-cccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecC----CcccCceehhHHHHHH-----hhCcc
Confidence 41 11122223568999999998865 43333 34455544 6666 33 2233333333 34456
Q ss_pred ceEEEEeccc-CHHHHHHHhhcccCC--CCcEEEecCeecceeEEEecCCcc----chHHHHHHHHHHHHhhCCCCCEEE
Q psy2470 351 LKLIISSATV-DAEEICQFYNISASS--NATILSVKGHLYPVSVYYSNDPVV----NYVQGVVDTAIKIHESMPVGDILA 423 (858)
Q Consensus 351 ~q~il~SAT~-~~~~~~~~~~~~~~~--~~~~i~v~g~~~~v~~~~~~~~~~----~~~~~~~~~l~~i~~~~~~g~iLV 423 (858)
.|++.+|||+ |.+.+++|++..... -.|+-...+..+....++.....+ .........+...+. ..|++||
T Consensus 181 ~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~--~~~qvLv 258 (766)
T COG1204 181 IRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLA--EGGQVLV 258 (766)
T ss_pred eEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHh--cCCeEEE
Confidence 8999999999 999999999842110 001100111111112222221111 111233333444333 3789999
Q ss_pred EcCCHHHHHHHHHHHHHhcc--CC---------CCcc-------------------eEEEeccCCCCHHHHHHhcCCCCC
Q psy2470 424 FVIGLEQIEHIIGILKQYHN--QR---------EDLK-------------------LLILPMHGSLPNNEQIKVFRPTPR 473 (858)
Q Consensus 424 Fl~t~~~i~~l~~~L~~~~~--~~---------~~~~-------------------~~v~~LHg~l~q~~r~~v~~~f~~ 473 (858)
|++++.+....++.|+.... .. .... ..+.-.|++|+.++|.-+.+.|+.
T Consensus 259 Fv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~ 338 (766)
T COG1204 259 FVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRK 338 (766)
T ss_pred EEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhc
Confidence 99999999999999983100 00 0001 124567999999999999999999
Q ss_pred CcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh---h
Q psy2470 474 AMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN---F 547 (858)
Q Consensus 474 g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~---~ 547 (858)
|++|||+||+..+.|++.|.-++||- | ..+||+..| ..++++-++.|+.|||||.|= |..+.+- +
T Consensus 339 g~ikVlv~TpTLA~GVNLPA~~VIIk-~---~~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~ 409 (766)
T COG1204 339 GKIKVLVSTPTLAAGVNLPARTVIIK-D---TRRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHD 409 (766)
T ss_pred CCceEEEechHHhhhcCCcceEEEEe-e---eEEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcEEEEecCcc
Confidence 99999999999999999999888883 1 344887444 378999999999999999873 5555444 2
Q ss_pred hHhhhhhhhhccCCCCCCCCCCCccccCcccchhhh----------------HHHHHHHhhhHhHhHhhhCCCCCccccc
Q psy2470 548 MYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFF----------------SFFQYLLEAGWCYDTKLIGITEPRRISV 611 (858)
Q Consensus 548 ~~~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~----------------~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 611 (858)
+-+...+ . ++.++||...+.|.++..++ ....|+..+ +...+......
T Consensus 410 ~~~~~~~-----~---~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t--------~~~~~~~~~~~ 473 (766)
T COG1204 410 ELEYLAE-----L---YIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERT--------FYNPQTYGEGM 473 (766)
T ss_pred chhHHHH-----H---hhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHH--------Hhhhhhccccc
Confidence 2223333 3 44556888888888777666 222233322 33333223344
Q ss_pred CCchHHHHHHHHHhcC-CeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeeccccccc
Q psy2470 612 TSLANRVSEELRTTLG-HTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERT 680 (858)
Q Consensus 612 l~~a~~~a~~~L~~lg-~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~ 680 (858)
+...+..+++.|.+.+ .+ + ........| .+|..++++++||.++++ +.|.+.+-.
T Consensus 474 ~~~~i~~~~~~L~~~~~~~-----~-~~~~~~~at-----e~g~~~s~~yi~~~sa~~---~~~~l~~~~ 529 (766)
T COG1204 474 LREEILASLRYLEENGLIL-----D-ADWEALHAT-----ELGKLVSRLYIDPESAKI---FRDLLAELA 529 (766)
T ss_pred hHHHHHHHHHHHHhcccee-----e-ccccccchh-----HHHHHhhhccCCHHHHHH---HHHHHHHhc
Confidence 4557778888888876 33 2 222222246 899999999999999988 555444443
No 76
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=8.6e-24 Score=246.38 Aligned_cols=159 Identities=19% Similarity=0.132 Sum_probs=114.3
Q ss_pred eEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCeecceeEE---EecCCccchHHHHHHHHHHHHhhC--CCCCEEEE
Q psy2470 352 KLIISSATV--DAEEICQFYNISASSNATILSVKGHLYPVSVY---YSNDPVVNYVQGVVDTAIKIHESM--PVGDILAF 424 (858)
Q Consensus 352 q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~---~~~~~~~~~~~~~~~~l~~i~~~~--~~g~iLVF 424 (858)
++..||||. ..++|.+.++. .++.||-........ +...... .+...+.+.+... .+.++|||
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l------~vv~IPt~kp~~r~~~~~~v~~t~~----~K~~aL~~~i~~~~~~~~pvLIf 479 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGL------PVVRIPTNRPSQRRHLPDEVFLTAA----AKWAAVAARVRELHAQGRPVLVG 479 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCC------CeEEeCCCCCccceecCCEEEeCHH----HHHHHHHHHHHHHHhcCCCEEEE
Confidence 445689998 34567777762 345555322111111 1111112 2333344433221 24679999
Q ss_pred cCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCC---Cee-----E
Q psy2470 425 VIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIP---GIV-----Y 496 (858)
Q Consensus 425 l~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp---~V~-----~ 496 (858)
++|+++++.+++.|.+. |+.+..|||++++.++..+..++++| +|+||||+|+||+||+ +|. |
T Consensus 480 t~t~~~se~L~~~L~~~-------gi~~~~Lhg~~~~rE~~ii~~ag~~g--~VlVATdmAgRGtDI~l~~~V~~~GGLh 550 (656)
T PRK12898 480 TRSVAASERLSALLREA-------GLPHQVLNAKQDAEEAAIVARAGQRG--RITVATNMAGRGTDIKLEPGVAARGGLH 550 (656)
T ss_pred eCcHHHHHHHHHHHHHC-------CCCEEEeeCCcHHHHHHHHHHcCCCC--cEEEEccchhcccCcCCccchhhcCCCE
Confidence 99999999999999987 89999999997777766666555544 6999999999999999 776 9
Q ss_pred EEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEehh
Q psy2470 497 VIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKNF 547 (858)
Q Consensus 497 VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~~ 547 (858)
||| || .|.|...|.||+|||||.|. |.|+.++.
T Consensus 551 VI~--------~d----------~P~s~r~y~hr~GRTGRqG~~G~s~~~is 584 (656)
T PRK12898 551 VIL--------TE----------RHDSARIDRQLAGRCGRQGDPGSYEAILS 584 (656)
T ss_pred EEE--------cC----------CCCCHHHHHHhcccccCCCCCeEEEEEec
Confidence 999 66 78889999999999999997 99999883
No 77
>PRK09401 reverse gyrase; Reviewed
Probab=99.90 E-value=1.8e-24 Score=269.79 Aligned_cols=277 Identities=14% Similarity=0.081 Sum_probs=167.1
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeee-eeE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYIS-RGY 283 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~-vG~ 283 (858)
-++|+|||||| . |.+|...+. . . ...+++|++|||+||.|+++++. .++...+..... .|.
T Consensus 99 ~i~ApTGsGKT-----~-f~l~~~~~l----~--~-----~g~~alIL~PTreLa~Qi~~~l~-~l~~~~~~~~~~~~g~ 160 (1176)
T PRK09401 99 AIIAPTGVGKT-----T-FGLVMSLYL----A--K-----KGKKSYIIFPTRLLVEQVVEKLE-KFGEKVGCGVKILYYH 160 (1176)
T ss_pred EEEcCCCCCHH-----H-HHHHHHHHH----H--h-----cCCeEEEEeccHHHHHHHHHHHH-HHhhhcCceEEEEEcc
Confidence 45799999999 2 333333321 1 1 12358999999999999988874 445444443111 111
Q ss_pred E-Ee---ccce----eecceeEEEeecCccccCCCccCCCcccEE------EecCCCCCchh---hhhHH----HHHHHH
Q psy2470 284 M-FR---KGRM----KILVSKIFKMSQGKPSDSGVEPISQSYLVE------LSILAPGGQDV---IGEDM----KAFAEQ 342 (858)
Q Consensus 284 ~-vr---~~~~----~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl------R~l~~~~~~d~---ll~~l----k~~~~~ 342 (858)
+ .. .... .....+|+|+|||+|.+........++.++ ++++..-..|- ++||. +.+.+.
T Consensus 161 ~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~ 240 (1176)
T PRK09401 161 SSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMEL 240 (1176)
T ss_pred CCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHh
Confidence 1 00 0101 123479999999999982223233335444 55531101110 12331 111111
Q ss_pred hcc--------------------cCCCCceEEEEecccCHHHHH-HHhhcccCCCCcEEEecCee---cceeEEEecCCc
Q psy2470 343 LKP--------------------LKRTQLKLIISSATVDAEEIC-QFYNISASSNATILSVKGHL---YPVSVYYSNDPV 398 (858)
Q Consensus 343 l~~--------------------~~~~~~q~il~SAT~~~~~~~-~~~~~~~~~~~~~i~v~g~~---~~v~~~~~~~~~ 398 (858)
+.. ..+.+.|+++||||++.+... ..|. +.-.+.+.... .++.+.|....
T Consensus 241 i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~-----~ll~~~v~~~~~~~rnI~~~yi~~~- 314 (1176)
T PRK09401 241 IRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFR-----ELLGFEVGSPVFYLRNIVDSYIVDE- 314 (1176)
T ss_pred cccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhh-----ccceEEecCcccccCCceEEEEEcc-
Confidence 110 012268999999999643222 2232 12223332221 24555555432
Q ss_pred cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHH---HHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCc
Q psy2470 399 VNYVQGVVDTAIKIHESMPVGDILAFVIGLEQ---IEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAM 475 (858)
Q Consensus 399 ~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~---i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~ 475 (858)
+ +...+..+.... ++++||||++++. ++.+++.|+.. |+.+..+||+| .+.+++|++|+
T Consensus 315 -~----k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~-------gi~v~~~hg~l-----~~~l~~F~~G~ 376 (1176)
T PRK09401 315 -D----SVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDL-------GINAELAISGF-----ERKFEKFEEGE 376 (1176)
T ss_pred -c----HHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHC-------CCcEEEEeCcH-----HHHHHHHHCCC
Confidence 2 223344444443 3579999999777 99999999987 89999999999 23459999999
Q ss_pred EEEEEe----cCcccccCCCCC-eeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccC
Q psy2470 476 RKIVIA----TNIAETSITIPG-IVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAG 535 (858)
Q Consensus 476 ~kVlvA----TdvAergldIp~-V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaG 535 (858)
.+|||| ||+|+||||||+ |+||||+|+|+.+. . --..+.+.||.||+-
T Consensus 377 ~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~-~-----------~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 377 VDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKF-S-----------LEEELAPPFLLLRLL 429 (1176)
T ss_pred CCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEE-e-----------ccccccCHHHHHHHH
Confidence 999999 799999999999 89999999887543 1 012345779999985
No 78
>KOG0329|consensus
Probab=99.90 E-value=1.4e-24 Score=217.38 Aligned_cols=291 Identities=14% Similarity=0.142 Sum_probs=195.9
Q ss_pred cchHHHHHH---HhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhh
Q psy2470 145 LDSAVEILL---HRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRR 221 (858)
Q Consensus 145 ~~~~~~~~~---~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~ 221 (858)
-.+...+++ +.+|.+-|-.++-|+..|++-+.-++-+.+. +- .|+.|.||| +
T Consensus 40 hssgfrdfllkpellraivdcgfehpsevqhecipqailgmdv--lc------------------qaksgmgkt-----a 94 (387)
T KOG0329|consen 40 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDV--LC------------------QAKSGMGKT-----A 94 (387)
T ss_pred eccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchh--he------------------ecccCCCce-----e
Confidence 355566665 4566677777777888888888777766432 22 389999999 4
Q ss_pred hcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHH---HHHHHHhC-CcCccEeeeeeEEEeccceeecceeE
Q psy2470 222 ALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTV---VEFLTEMG-CRMDFEYISRGYMFRKGRMKILVSKI 297 (858)
Q Consensus 222 a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva---~~v~~e~g-~~~g~~~~~vG~~vr~~~~~~~~t~I 297 (858)
.|.+. -+.|.++-.| ...++|++.|||+|.|+. +|+++.|. .++..-|||.......+-.. ..+||
T Consensus 95 vfvl~-------tlqqiepv~g--~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk-~~Phi 164 (387)
T KOG0329|consen 95 VFVLA-------TLQQIEPVDG--QVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLK-NCPHI 164 (387)
T ss_pred eeehh-------hhhhcCCCCC--eEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHh-CCCeE
Confidence 44443 3445554333 345799999999999995 46777765 45666666555433322222 36899
Q ss_pred EEeecCccccCCC--ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHH
Q psy2470 298 FKMSQGKPSDSGV--EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQ 367 (858)
Q Consensus 298 ~v~TpGrLl~~~~--~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~ 367 (858)
+|+||||++.+.. ...|+++.+. .||+ + +.+.++++++. ...|.+.|+++||||+ ++...+.
T Consensus 165 vVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle----~---lDMrRDvQEif-r~tp~~KQvmmfsatlskeiRpvC~ 236 (387)
T KOG0329|consen 165 VVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLE----Q---LDMRRDVQEIF-RMTPHEKQVMMFSATLSKEIRPVCH 236 (387)
T ss_pred EEcCcHHHHHHHHhccCchhhcceeehhhHHHHHH----H---HHHHHHHHHHh-hcCcccceeeeeeeecchhhHHHHH
Confidence 9999999999433 3455555443 5555 1 55566666433 2567789999999999 5666777
Q ss_pred HhhcccCCCCcEEEecCee----cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhcc
Q psy2470 368 FYNISASSNATILSVKGHL----YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHN 443 (858)
Q Consensus 368 ~~~~~~~~~~~~i~v~g~~----~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~ 443 (858)
.|+. +|--+.++... +...++|...... ++...+.+++...+-.+++||+.+-..+.
T Consensus 237 kFmQ----dPmEi~vDdE~KLtLHGLqQ~YvkLke~----eKNrkl~dLLd~LeFNQVvIFvKsv~Rl~----------- 297 (387)
T KOG0329|consen 237 KFMQ----DPMEIFVDDEAKLTLHGLQQYYVKLKEN----EKNRKLNDLLDVLEFNQVVIFVKSVQRLS----------- 297 (387)
T ss_pred hhhc----CchhhhccchhhhhhhhHHHHHHhhhhh----hhhhhhhhhhhhhhhcceeEeeehhhhhh-----------
Confidence 6664 44444444322 4455555543221 23334445554455678999987654310
Q ss_pred CCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecC
Q psy2470 444 QREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPIS 523 (858)
Q Consensus 444 ~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis 523 (858)
| ..+ +||||+..||+||..|+.|+| || .|-+
T Consensus 298 ---------------------------f---~kr-~vat~lfgrgmdiervNi~~N--------Yd----------mp~~ 328 (387)
T KOG0329|consen 298 ---------------------------F---QKR-LVATDLFGRGMDIERVNIVFN--------YD----------MPED 328 (387)
T ss_pred ---------------------------h---hhh-hHHhhhhccccCcccceeeec--------cC----------CCCC
Confidence 1 123 999999999999999999999 88 7888
Q ss_pred HhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 524 KASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 524 ~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
..+|.||+|||||.|. |.++.+.
T Consensus 329 ~DtYlHrv~rAgrfGtkglaitfv 352 (387)
T KOG0329|consen 329 SDTYLHRVARAGRFGTKGLAITFV 352 (387)
T ss_pred chHHHHHhhhhhccccccceeehh
Confidence 9999999999999998 9999988
No 79
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=1.6e-23 Score=249.10 Aligned_cols=103 Identities=20% Similarity=0.170 Sum_probs=95.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCC---CC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITI---PG 493 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldI---p~ 493 (858)
...++||||+|+++++.+++.|.+. ++.+..|||++.++++..+...+++| +|+||||+|+||+|| |+
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~-------gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~ 497 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEA-------GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEG 497 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHC-------CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccc
Confidence 4678999999999999999999987 89999999999999999898888877 799999999999999 79
Q ss_pred ee-----EEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 494 IV-----YVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 494 V~-----~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|. |||| || .|.|...|.||+|||||.|. |.|+.++
T Consensus 498 V~~~GGL~VI~--------~d----------~p~s~r~y~qr~GRtGR~G~~G~s~~~i 538 (790)
T PRK09200 498 VHELGGLAVIG--------TE----------RMESRRVDLQLRGRSGRQGDPGSSQFFI 538 (790)
T ss_pred cccccCcEEEe--------cc----------CCCCHHHHHHhhccccCCCCCeeEEEEE
Confidence 99 9999 66 78889999999999999997 9999888
No 80
>KOG0920|consensus
Probab=99.89 E-value=4.8e-25 Score=261.12 Aligned_cols=130 Identities=27% Similarity=0.374 Sum_probs=116.1
Q ss_pred ccceeeccCHHHHhcccc-CCCcccccCChhHHHHHHHHcCCCCCCCCCC--CCCCCHHHHHHHHHHHHhcCccccCCCc
Q psy2470 41 SRKFSRLYTEASFSQLNE-CTPPEMQRTELSSAVLQLKALGIHNILRFSF--PSPPPAQNLRVALELLYSLGAMDVNGNL 117 (858)
Q Consensus 41 ~g~c~rLy~~~~~~~~~~-~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~--~~~P~~~~l~~a~~~L~~l~ald~~~~l 117 (858)
+|+||||||+..|+.+.. +++|||+|.+|.++||++|.|++.++..|-- +|||+.+++.+|++.|+.+||+|.+++|
T Consensus 534 ~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~L 613 (924)
T KOG0920|consen 534 PGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEEL 613 (924)
T ss_pred CCeeEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccc
Confidence 999999999999988766 9999999999999999999999999885332 8999999999999999999999999999
Q ss_pred chHHHhhhhcCCCCchhhhHHhhccccc----------chHHHHHHHhhhhhcccccCCCCccc
Q psy2470 118 TKPVGETMAEMPLHPIHAKVLLSSGSVL----------DSAVEILLHRLRGLCDNVDSGPETFH 171 (858)
Q Consensus 118 t~~lG~~ma~lp~~p~~~~~l~~s~s~~----------~~~~~~~~~r~~~~~~~~~~~~~~f~ 171 (858)
| |||+.||.||+||+++||++..+-+. .++..+||+-|.|..+.+++.+..|.
T Consensus 614 T-~LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~ 676 (924)
T KOG0920|consen 614 T-PLGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLA 676 (924)
T ss_pred h-HHHHHHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhc
Confidence 9 89999999999999999999966553 34577899999999988887554444
No 81
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.88 E-value=3.2e-22 Score=235.83 Aligned_cols=102 Identities=17% Similarity=0.145 Sum_probs=91.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCC----
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIP---- 492 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp---- 492 (858)
...++|||++|++.++.+++.|.+. |+.+..|||++.++++..+.+++++| +|+||||+|+||+||+
T Consensus 423 ~~~pvLIft~s~~~se~ls~~L~~~-------gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~ 493 (762)
T TIGR03714 423 TGQPVLLITGSVEMSEIYSELLLRE-------GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKG 493 (762)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHC-------CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCcc
Confidence 3678999999999999999999987 89999999999999999999988887 7999999999999999
Q ss_pred -----CeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 493 -----GIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 493 -----~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+.+||+ |+ .|..+.+ .||+|||||.|. |.|+.+.
T Consensus 494 v~~~GGL~vIit--------~~----------~ps~rid-~qr~GRtGRqG~~G~s~~~i 534 (762)
T TIGR03714 494 VAELGGLAVIGT--------ER----------MENSRVD-LQLRGRSGRQGDPGSSQFFV 534 (762)
T ss_pred ccccCCeEEEEe--------cC----------CCCcHHH-HHhhhcccCCCCceeEEEEE
Confidence 9999999 77 3344445 899999999997 9999887
No 82
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.88 E-value=6.8e-22 Score=221.14 Aligned_cols=269 Identities=13% Similarity=0.097 Sum_probs=157.2
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhC---CcCccEeeee
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMG---CRMDFEYISR 281 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g---~~~g~~~~~v 281 (858)
-+.|+|||||| .++.+|.+. . . ..++++.|++.++.|.++++.+... ..-+.. +
T Consensus 18 ~i~apTGsGKT-----~~~~~~~l~-------~------~--~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~---v 74 (357)
T TIGR03158 18 FNTAPTGAGKT-----LAWLTPLLH-------G------E--NDTIALYPTNALIEDQTEAIKEFVDVFKPERDVN---L 74 (357)
T ss_pred EEECCCCCCHH-----HHHHHHHHH-------c------C--CCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCce---E
Confidence 34699999999 333333221 0 0 1358999999999998887655431 111111 1
Q ss_pred eEEEe------------------cc--------ceeecceeEEEeecCccccCC----Ccc------CCCcccEE-----
Q psy2470 282 GYMFR------------------KG--------RMKILVSKIFKMSQGKPSDSG----VEP------ISQSYLVE----- 320 (858)
Q Consensus 282 G~~vr------------------~~--------~~~~~~t~I~v~TpGrLl~~~----~~~------~L~~~~vl----- 320 (858)
+...+ ++ ......+.|+++||..+..+. .++ .+.+++.+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 10000 00 000124677777887775421 111 23555555
Q ss_pred EecCCCCCchhhh---hHHHHHHHHhcccCCCCceEEEEecccCHHHHHHHhhcccCCCCcEEEecCe--ec--------
Q psy2470 321 LSILAPGGQDVIG---EDMKAFAEQLKPLKRTQLKLIISSATVDAEEICQFYNISASSNATILSVKGH--LY-------- 387 (858)
Q Consensus 321 R~l~~~~~~d~ll---~~lk~~~~~l~~~~~~~~q~il~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~--~~-------- 387 (858)
..++ +...+.++ .....+. ......|+++||||++.. +.+++........+++.++|+ .+
T Consensus 155 H~~~-~~~~~~~~~~l~~~~~~~-----~~~~~~~~i~lSAT~~~~-~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~ 227 (357)
T TIGR03158 155 HLYD-AKQLVGMLFLLAYMQLIR-----FFECRRKFVFLSATPDPA-LILRLQNAKQAGVKIAPIDGEKYQFPDNPELEA 227 (357)
T ss_pred cccC-cccchhhhhhhHHHHHHH-----hhhcCCcEEEEecCCCHH-HHHHHHhccccCceeeeecCcccccCCChhhhc
Confidence 3333 11122222 2222222 222347999999999643 333332100002456666666 11
Q ss_pred ------------ceeEEEecCCc--cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEE
Q psy2470 388 ------------PVSVYYSNDPV--VNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLIL 453 (858)
Q Consensus 388 ------------~v~~~~~~~~~--~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~ 453 (858)
++++.+..... .+.+....+.+.+.+...+++++|||++|++.++.+++.|++. ..++.+.
T Consensus 228 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~-----~~~~~~~ 302 (357)
T TIGR03158 228 DNKTQSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQ-----GLGDDIG 302 (357)
T ss_pred cccccccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhh-----CCCceEE
Confidence 35554443111 1111122233333333345678999999999999999999864 1156788
Q ss_pred eccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcc
Q psy2470 454 PMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGR 533 (858)
Q Consensus 454 ~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GR 533 (858)
.+||.+++++|.++. +.+||||||++|||||||++ +||- .|.+.++|+||+||
T Consensus 303 ~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi~--------------------~p~~~~~yiqR~GR 355 (357)
T TIGR03158 303 RITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLIF--------------------SARDAAAFWQRLGR 355 (357)
T ss_pred eeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEEE--------------------CCCCHHHHhhhccc
Confidence 999999999998764 56899999999999999987 5553 14567899999999
Q ss_pred cC
Q psy2470 534 AG 535 (858)
Q Consensus 534 aG 535 (858)
||
T Consensus 356 ~g 357 (357)
T TIGR03158 356 LG 357 (357)
T ss_pred CC
Confidence 98
No 83
>KOG0349|consensus
Probab=99.88 E-value=9.6e-23 Score=216.92 Aligned_cols=269 Identities=14% Similarity=0.126 Sum_probs=170.0
Q ss_pred ccCEEEccchHHHHHHHHHHHHH---HhC-CcCc--cEeeeeeEEEecccee---ecceeEEEeecCccccCCCcc--CC
Q psy2470 246 ARPTIVRSSIDVACSCTVVEFLT---EMG-CRMD--FEYISRGYMFRKGRMK---ILVSKIFKMSQGKPSDSGVEP--IS 314 (858)
Q Consensus 246 ~~~~LVl~PtR~la~qva~~v~~---e~g-~~~g--~~~~~vG~~vr~~~~~---~~~t~I~v~TpGrLl~~~~~~--~L 314 (858)
.+.++|+.|.||+|.|+..++-+ ... -.+. .. +| ++....+. ..+++|+|+|||||+++.+.. .|
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLm---ig-gv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~l 361 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLM---IG-GVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTL 361 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhh---hh-hHHhHHHHHHhhcCceeeecCchhhhhhhhccceee
Confidence 35689999999999999876532 111 0111 12 22 22332322 367999999999999944432 33
Q ss_pred CcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc---CHHHHHHHhhcccCCCCcEEEecCee
Q psy2470 315 QSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV---DAEEICQFYNISASSNATILSVKGHL 386 (858)
Q Consensus 315 ~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~---~~~~~~~~~~~~~~~~~~~i~v~g~~ 386 (858)
.+..++ +.+-.--.+|++.-+-+++. ++. .-...+|.++.|||+ ++.++.+..+..|. -+...|..
T Consensus 362 t~crFlvlDead~lL~qgy~d~I~r~h~qip-~~t-sdg~rlq~~vCsatlh~feVkk~~ervmhfpt----wVdLkgeD 435 (725)
T KOG0349|consen 362 THCRFLVLDEADLLLGQGYDDKIYRFHGQIP-HMT-SDGFRLQSPVCSATLHIFEVKKVGERVMHFPT----WVDLKGED 435 (725)
T ss_pred eeeEEEEecchhhhhhcccHHHHHHHhccch-hhh-cCCcccccceeeeEEeEEEeeehhhhhccCce----eEeccccc
Confidence 333333 11110011233332322222 000 011358999999998 77777776654321 12222111
Q ss_pred -c--ceeEEE-----------e---------cCCccc----------hHHHHHHHH-----HHHHhhCCCCCEEEEcCCH
Q psy2470 387 -Y--PVSVYY-----------S---------NDPVVN----------YVQGVVDTA-----IKIHESMPVGDILAFVIGL 428 (858)
Q Consensus 387 -~--~v~~~~-----------~---------~~~~~~----------~~~~~~~~l-----~~i~~~~~~g~iLVFl~t~ 428 (858)
. .|..+. . ....++ ........+ ......+.-.++|+||.|+
T Consensus 436 ~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk 515 (725)
T KOG0349|consen 436 LVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTK 515 (725)
T ss_pred ccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEecc
Confidence 0 000000 0 000011 111111111 1112233456899999999
Q ss_pred HHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceec
Q psy2470 429 EQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWF 508 (858)
Q Consensus 429 ~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~y 508 (858)
.+|+.+.+++++.. ...+++++|||+..+.||..-++.|+.+.+|.++|||||+|||||.++.||||
T Consensus 516 ~dcDnLer~~~qkg----g~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~in--------- 582 (725)
T KOG0349|consen 516 QDCDNLERMMNQKG----GKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMIN--------- 582 (725)
T ss_pred ccchHHHHHHHHcC----CccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEE---------
Confidence 99999999998652 23799999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 509 NPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 509 d~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
++.|-.+.+|+||+||.||+.+ |.+++|.
T Consensus 583 ---------vtlpd~k~nyvhrigrvgraermglaislv 612 (725)
T KOG0349|consen 583 ---------VTLPDDKTNYVHRIGRVGRAERMGLAISLV 612 (725)
T ss_pred ---------EecCcccchhhhhhhccchhhhcceeEEEe
Confidence 2368888999999999999988 9999987
No 84
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.88 E-value=1.9e-21 Score=213.88 Aligned_cols=361 Identities=14% Similarity=0.087 Sum_probs=239.4
Q ss_pred CEEEccchHHHHHHHHHHHHHH---hCCcCccEeeeeeEEEeccc------eeecceeEEEeecCcccc-CCCccCCCcc
Q psy2470 248 PTIVRSSIDVACSCTVVEFLTE---MGCRMDFEYISRGYMFRKGR------MKILVSKIFKMSQGKPSD-SGVEPISQSY 317 (858)
Q Consensus 248 ~~LVl~PtR~la~qva~~v~~e---~g~~~g~~~~~vG~~vr~~~------~~~~~t~I~v~TpGrLl~-~~~~~~L~~~ 317 (858)
..|-++|.-.||.|=.+.+.+. +|..+... ||.+--..+ ..+...+|+|+|.-=+-. +.....+.++
T Consensus 263 KmlfLvPLVALANQKy~dF~~rYs~Lglkvair---VG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdi 339 (830)
T COG1202 263 KMLFLVPLVALANQKYEDFKERYSKLGLKVAIR---VGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDI 339 (830)
T ss_pred eEEEEehhHHhhcchHHHHHHHhhcccceEEEE---echhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCccccc
Confidence 3688999999999988877554 34444444 553211111 122457999999843322 4444677777
Q ss_pred cEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc-CHHHHHHHhhcccCCCCcEEEecCeecceeE
Q psy2470 318 LVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV-DAEEICQFYNISASSNATILSVKGHLYPVSV 391 (858)
Q Consensus 318 ~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~ 391 (858)
.++ .||+..+----+.|++..+. ..-++.|.|.+|||+ |.+.++++++ +..+.-++|..|.+-
T Consensus 340 GtVVIDEiHtL~deERG~RLdGLI~RLr-----~l~~~AQ~i~LSATVgNp~elA~~l~------a~lV~y~~RPVplEr 408 (830)
T COG1202 340 GTVVIDEIHTLEDEERGPRLDGLIGRLR-----YLFPGAQFIYLSATVGNPEELAKKLG------AKLVLYDERPVPLER 408 (830)
T ss_pred ceEEeeeeeeccchhcccchhhHHHHHH-----HhCCCCeEEEEEeecCChHHHHHHhC------CeeEeecCCCCChhH
Confidence 766 77771111123456776666 556799999999999 9999999997 667777777666664
Q ss_pred EEecCCccchHHHHHHHHHHHHhh--------CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHH
Q psy2470 392 YYSNDPVVNYVQGVVDTAIKIHES--------MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNE 463 (858)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~i~~~--------~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~ 463 (858)
+....... .++++.+..+.+. .-.|+.|||.+++..|+.++..|... |+++.|+|++|++.+
T Consensus 409 Hlvf~~~e---~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k-------G~~a~pYHaGL~y~e 478 (830)
T COG1202 409 HLVFARNE---SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK-------GLKAAPYHAGLPYKE 478 (830)
T ss_pred eeeeecCc---hHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC-------CcccccccCCCcHHH
Confidence 44432211 2344444444332 23699999999999999999999876 999999999999999
Q ss_pred HHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC---Cc
Q psy2470 464 QIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR---SG 540 (858)
Q Consensus 464 r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g---~G 540 (858)
|..+...|.++...++|+|--++.|+|.|.-.++..+ -..| ..|.|..++.|+.|||||.+ +|
T Consensus 479 Rk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEs---------LaMG-----~~WLs~~EF~QM~GRAGRp~yHdrG 544 (830)
T COG1202 479 RKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFES---------LAMG-----IEWLSVREFQQMLGRAGRPDYHDRG 544 (830)
T ss_pred HHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHH---------HHcc-----cccCCHHHHHHHhcccCCCCcccCc
Confidence 9999999999999999999999999999986655541 1122 26999999999999999987 39
Q ss_pred eEEEeh---hhHhh-hhhh--hhccCCCCCCCCCCCccccCcccchhhhHHHHHHHhhhHhHhHhhhCCCCCcccccC--
Q psy2470 541 HVYRKN---FMYNR-LFIH--FCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLEAGWCYDTKLIGITEPRRISVT-- 612 (858)
Q Consensus 541 ~~~rL~---~~~~~-l~~~--~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l-- 612 (858)
++|-+. ..|.. |... ...=. -..++||..-.+.+++...-+++- .+.+.- +.. ...++.-.
T Consensus 545 kVyllvepg~~Y~~~m~~TEdevA~k---LL~s~~e~V~vey~ee~e~e~vLA---~~~v~~---s~~--~i~~v~~~~~ 613 (830)
T COG1202 545 KVYLLVEPGKKYHASMEETEDEVAFK---LLESEPEPVIVEYDEEDEEENVLA---SAGVTN---SLS--VIERVNSLML 613 (830)
T ss_pred eEEEEecCChhhcccccccHHHHHHH---HhcCCCCcceeccCcHHHHHHHHH---HhhhcC---cHH--HHhhcChhhc
Confidence 999887 44422 2110 00000 122337777777764444443331 111000 000 00111100
Q ss_pred --CchHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccc
Q psy2470 613 --SLANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKY 668 (858)
Q Consensus 613 --~~a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~ 668 (858)
......++..|+++|++ + .+++..+.| +.|+.++.--+.|..+..
T Consensus 614 g~~~~~~k~l~~Lee~g~i-----~-~~G~~v~~T-----~yGrava~~Fl~p~~a~~ 660 (830)
T COG1202 614 GAAFDPKKALSKLEEYGMI-----K-KKGNIVRPT-----PYGRAVAMSFLGPSEAEF 660 (830)
T ss_pred cccCCHHHHHHHHHhcCCe-----e-ccCCEeeec-----cccceeEEeecCchHHHH
Confidence 01455678899999999 4 344434467 999999988888887776
No 85
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.87 E-value=4.9e-22 Score=232.77 Aligned_cols=114 Identities=24% Similarity=0.193 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 404 GVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 404 ~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
+.++.+...+.. +.++||||++.++++.+++.|.+. |++...|||+ |.+|...+..|..+.-.|+||||
T Consensus 393 ai~~~i~~~~~~--grpvLV~t~si~~se~ls~~L~~~-------gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATn 461 (745)
T TIGR00963 393 AVVDEIKERHAK--GQPVLVGTTSVEKSELLSNLLKER-------GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATN 461 (745)
T ss_pred HHHHHHHHHHhc--CCCEEEEeCcHHHHHHHHHHHHHc-------CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEec
Confidence 344444444433 678999999999999999999987 8889999998 88999999999999999999999
Q ss_pred cccccCCCCC-------eeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 484 IAETSITIPG-------IVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 484 vAergldIp~-------V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+|+||+||+. ..|||+ |+ .|.|...+.||.|||||.|. |.+..+.
T Consensus 462 mAgRGtDI~l~~V~~~GGl~VI~--------t~----------~p~s~ri~~q~~GRtGRqG~~G~s~~~l 514 (745)
T TIGR00963 462 MAGRGTDIKLEEVKELGGLYVIG--------TE----------RHESRRIDNQLRGRSGRQGDPGSSRFFL 514 (745)
T ss_pred cccCCcCCCccchhhcCCcEEEe--------cC----------CCCcHHHHHHHhccccCCCCCcceEEEE
Confidence 9999999998 559999 55 68889999999999999997 9988777
No 86
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.86 E-value=3.4e-21 Score=224.91 Aligned_cols=244 Identities=10% Similarity=0.033 Sum_probs=155.2
Q ss_pred CEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccceeecceeEEEeecCccccCCCccCCCcccEE------E
Q psy2470 248 PTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVE------L 321 (858)
Q Consensus 248 ~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl------R 321 (858)
++||++||++|+.|..+++.+..... ...+++++ .+. ......+|+|+|++++.+.. ...++++.++ +
T Consensus 160 ~vLilvpt~eL~~Q~~~~l~~~~~~~-~~~~~~i~---~g~-~~~~~~~I~VaT~qsl~~~~-~~~~~~~~~iIvDEaH~ 233 (501)
T PHA02558 160 KVLIIVPTTSLVTQMIDDFVDYRLFP-REAMHKIY---SGT-AKDTDAPIVVSTWQSAVKQP-KEWFDQFGMVIVDECHL 233 (501)
T ss_pred eEEEEECcHHHHHHHHHHHHHhcccc-ccceeEEe---cCc-ccCCCCCEEEeeHHHHhhch-hhhccccCEEEEEchhc
Confidence 58999999999999999885433222 12211121 111 11134789999999998722 2245666665 4
Q ss_pred ecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccC-HH--H--HHHHhhcccCCCCcEEEec-------Ceecce
Q psy2470 322 SILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVD-AE--E--ICQFYNISASSNATILSVK-------GHLYPV 389 (858)
Q Consensus 322 ~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~-~~--~--~~~~~~~~~~~~~~~i~v~-------g~~~~v 389 (858)
+.. .. +...+. ..++..+++.||||+. .. . +..+|+ +....+. |...++
T Consensus 234 ~~~----~~----~~~il~-----~~~~~~~~lGLTATp~~~~~~~~~~~~~fG------~i~~~v~~~~li~~g~l~~~ 294 (501)
T PHA02558 234 FTG----KS----LTSIIT-----KLDNCKFKFGLTGSLRDGKANILQYVGLFG------DIFKPVTTSQLMEEGQVTDL 294 (501)
T ss_pred ccc----hh----HHHHHH-----hhhccceEEEEeccCCCccccHHHHHHhhC------CceEEecHHHHHhCCCcCCc
Confidence 443 22 222222 2334578999999993 11 1 233444 1111111 111111
Q ss_pred eEE--EecCC--------ccchH---------HHHHHHHHHHHh--hCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCc
Q psy2470 390 SVY--YSNDP--------VVNYV---------QGVVDTAIKIHE--SMPVGDILAFVIGLEQIEHIIGILKQYHNQREDL 448 (858)
Q Consensus 390 ~~~--~~~~~--------~~~~~---------~~~~~~l~~i~~--~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~ 448 (858)
++. +...+ ..+|. +.....+.++.. ....+++|||+...+.++.+++.|++.
T Consensus 295 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~------- 367 (501)
T PHA02558 295 KINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKV------- 367 (501)
T ss_pred eEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHc-------
Confidence 111 11000 00110 011112222211 123567999999999999999999976
Q ss_pred ceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEec-CcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhH
Q psy2470 449 KLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIAT-NIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASA 527 (858)
Q Consensus 449 ~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvAT-dvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~ 527 (858)
+..+..+||++++++|.++++.|++|+.+||||| +++++|+|+|++++||. ++ .+-|+..|
T Consensus 368 g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl--------~~----------p~~s~~~~ 429 (501)
T PHA02558 368 YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF--------AH----------PSKSKIIV 429 (501)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEE--------ec----------CCcchhhh
Confidence 7889999999999999999999999999999998 99999999999999998 44 34567889
Q ss_pred HHhhcccCCCCCce
Q psy2470 528 VQRAGRAGRVRSGH 541 (858)
Q Consensus 528 ~qR~GRaGR~g~G~ 541 (858)
.||+||+||.++|+
T Consensus 430 ~QriGR~~R~~~~K 443 (501)
T PHA02558 430 LQSIGRVLRKHGSK 443 (501)
T ss_pred hhhhhccccCCCCC
Confidence 99999999998865
No 87
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.86 E-value=6.4e-22 Score=247.45 Aligned_cols=259 Identities=13% Similarity=0.077 Sum_probs=155.1
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
++|+|||||| . |.+|...+.. . ...+++|++|||+||.|+++++.+. ....|.....+|+..
T Consensus 98 i~ApTGsGKT-----~-f~l~~~~~l~------~-----~g~~vLIL~PTreLa~Qi~~~l~~l-~~~~~i~~~~i~~~~ 159 (1171)
T TIGR01054 98 IIAPTGVGKT-----T-FGLAMSLFLA------K-----KGKRCYIILPTTLLVIQVAEKISSL-AEKAGVGTVNIGAYH 159 (1171)
T ss_pred EECCCCCCHH-----H-HHHHHHHHHH------h-----cCCeEEEEeCHHHHHHHHHHHHHHH-HHhcCCceeeeeeec
Confidence 5699999999 2 3344333211 1 1235899999999999998877432 222222111122111
Q ss_pred ecc---c-------eeecceeEEEeecCcccc-CCCccCCCcccEE------EecCCCCCchhh---hhHHHH----HHH
Q psy2470 286 RKG---R-------MKILVSKIFKMSQGKPSD-SGVEPISQSYLVE------LSILAPGGQDVI---GEDMKA----FAE 341 (858)
Q Consensus 286 r~~---~-------~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl------R~l~~~~~~d~l---l~~lk~----~~~ 341 (858)
++. . .....++|+|+|||+|.+ ... ... ++.++ ++++..-+.|-+ +||..+ +.+
T Consensus 160 Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~-l~~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~ 237 (1171)
T TIGR01054 160 SRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE-LGP-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWK 237 (1171)
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH-hcC-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHH
Confidence 111 1 112348999999999998 322 111 44444 565511111111 233221 110
Q ss_pred Hh------------------cccCCCCce--EEEEecccCHHHHH-HHhhcccCCCCcEEEecCee---cceeEEEecCC
Q psy2470 342 QL------------------KPLKRTQLK--LIISSATVDAEEIC-QFYNISASSNATILSVKGHL---YPVSVYYSNDP 397 (858)
Q Consensus 342 ~l------------------~~~~~~~~q--~il~SAT~~~~~~~-~~~~~~~~~~~~~i~v~g~~---~~v~~~~~~~~ 397 (858)
.+ ....+++.| +++||||....... .+|. +.-.+.+.... ..+.+.|....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r-----~ll~~~v~~~~~~~r~I~~~~~~~~ 312 (1171)
T TIGR01054 238 LIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFR-----ELLGFEVGGGSDTLRNVVDVYVEDE 312 (1171)
T ss_pred HhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcc-----cccceEecCccccccceEEEEEecc
Confidence 00 011234445 67799995222222 2333 22223443222 24555554322
Q ss_pred ccchHHHHHHHHHHHHhhCCCCCEEEEcCCH---HHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCC
Q psy2470 398 VVNYVQGVVDTAIKIHESMPVGDILAFVIGL---EQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRA 474 (858)
Q Consensus 398 ~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~---~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g 474 (858)
. .. ..+.+++... .+.+|||++++ +.++.+++.|++. |+.+..+||++++ ++++.|++|
T Consensus 313 ~--~~----~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~-------g~~a~~lhg~~~~----~~l~~Fr~G 374 (1171)
T TIGR01054 313 D--LK----ETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENH-------GVKAVAYHATKPK----EDYEKFAEG 374 (1171)
T ss_pred c--HH----HHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhC-------CceEEEEeCCCCH----HHHHHHHcC
Confidence 1 11 2334444443 35689999999 9999999999977 8999999999974 688999999
Q ss_pred cEEEEEe----cCcccccCCCCC-eeEEEcCCCcccee
Q psy2470 475 MRKIVIA----TNIAETSITIPG-IVYVIDPGFVKARW 507 (858)
Q Consensus 475 ~~kVlvA----TdvAergldIp~-V~~VId~g~~k~~~ 507 (858)
+.+|||| ||+|+||||||+ |+||||+|+|+.+.
T Consensus 375 ~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~~ 412 (1171)
T TIGR01054 375 EIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFKV 412 (1171)
T ss_pred CCCEEEEeccccCcccccCCCCccccEEEEECCCCEEE
Confidence 9999999 599999999999 89999999998754
No 88
>PRK14701 reverse gyrase; Provisional
Probab=99.85 E-value=1.8e-21 Score=247.73 Aligned_cols=292 Identities=14% Similarity=0.029 Sum_probs=173.6
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcC--ccEeeeee
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRM--DFEYISRG 282 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~--g~~~~~vG 282 (858)
-++|+||||||+ ..+++... . .. ...+++|++|||+|+.|+++++.+ ++... +.. +.
T Consensus 98 li~APTGsGKTl-----~~~~~al~-~------~~-----~g~~aLVl~PTreLa~Qi~~~l~~-l~~~~~~~v~---v~ 156 (1638)
T PRK14701 98 SIVAPTGMGKST-----FGAFIALF-L------AL-----KGKKCYIILPTTLLVKQTVEKIES-FCEKANLDVR---LV 156 (1638)
T ss_pred EEEEcCCCCHHH-----HHHHHHHH-H------Hh-----cCCeEEEEECHHHHHHHHHHHHHH-HHhhcCCcee---EE
Confidence 357999999992 11222111 1 01 113589999999999999887743 33222 222 22
Q ss_pred EEEeccce----------eecceeEEEeecCccccCCCccCCCcccEE------EecCCCCCch-hh--hhHHHHHHH--
Q psy2470 283 YMFRKGRM----------KILVSKIFKMSQGKPSDSGVEPISQSYLVE------LSILAPGGQD-VI--GEDMKAFAE-- 341 (858)
Q Consensus 283 ~~vr~~~~----------~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl------R~l~~~~~~d-~l--l~~lk~~~~-- 341 (858)
+..+..+. .....+|+|+|||+|.+...+....+++++ ++++.+-.-| .+ +||..++.+
T Consensus 157 ~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~ 236 (1638)
T PRK14701 157 YYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKA 236 (1638)
T ss_pred EEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchhhhcCCChHHHHHHH
Confidence 22211111 112479999999999882222111334444 4443000001 01 233333321
Q ss_pred --Hhc---------------------ccCCCCce-EEEEecccCHH-HHHHHhhcccCCCCcEEEecCee---cceeEEE
Q psy2470 342 --QLK---------------------PLKRTQLK-LIISSATVDAE-EICQFYNISASSNATILSVKGHL---YPVSVYY 393 (858)
Q Consensus 342 --~l~---------------------~~~~~~~q-~il~SAT~~~~-~~~~~~~~~~~~~~~~i~v~g~~---~~v~~~~ 393 (858)
++. ...++..| +++||||+... ....+|. ++-.+.+.... ..+.+.|
T Consensus 237 ~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~-----~~l~f~v~~~~~~lr~i~~~y 311 (1638)
T PRK14701 237 WKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYR-----ELLGFEVGSGRSALRNIVDVY 311 (1638)
T ss_pred HHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhh-----cCeEEEecCCCCCCCCcEEEE
Confidence 111 01234455 67799999643 3445554 34445554332 2344555
Q ss_pred ecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHH---HHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCC
Q psy2470 394 SNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQI---EHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRP 470 (858)
Q Consensus 394 ~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i---~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~ 470 (858)
......+ + ..+..++... ...+||||++++.+ +.+++.|++. |+.+.++||+ |.++++.
T Consensus 312 i~~~~~~----k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~-------Gi~a~~~h~~-----R~~~l~~ 373 (1638)
T PRK14701 312 LNPEKII----K-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED-------GFKIELVSAK-----NKKGFDL 373 (1638)
T ss_pred EECCHHH----H-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC-------CCeEEEecch-----HHHHHHH
Confidence 4322111 1 2344454444 35789999998764 8899999977 9999999995 8899999
Q ss_pred CCCCcEEEEEec----CcccccCCCCC-eeEEEcCCCccce---e-ccCCCCCCcceeeecCHhhHHHhhcccCCCCC-c
Q psy2470 471 TPRAMRKIVIAT----NIAETSITIPG-IVYVIDPGFVKAR---W-FNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-G 540 (858)
Q Consensus 471 f~~g~~kVlvAT----dvAergldIp~-V~~VId~g~~k~~---~-yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G 540 (858)
|++|+.+||||| |+|+||||+|+ |+|||++|+||.+ . |.+.... + .. .....++.|||||.|. +
T Consensus 374 F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~--~---~~-~~~~~~~~~~a~~~g~~~ 447 (1638)
T PRK14701 374 FEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR--I---LG-LLSEILKIEEELKEGIPI 447 (1638)
T ss_pred HHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh--h---hc-chHHHHHhhhhcccCCcc
Confidence 999999999999 69999999999 9999999999943 2 3322211 0 01 2345677899999885 6
Q ss_pred eEEEeh
Q psy2470 541 HVYRKN 546 (858)
Q Consensus 541 ~~~rL~ 546 (858)
.|+..+
T Consensus 448 ~~~~~~ 453 (1638)
T PRK14701 448 EGVLDV 453 (1638)
T ss_pred hhHHHh
Confidence 665433
No 89
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.85 E-value=5.1e-21 Score=226.58 Aligned_cols=291 Identities=19% Similarity=0.162 Sum_probs=195.8
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHH---HHHhCCcCccEeeee
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEF---LTEMGCRMDFEYISR 281 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v---~~e~g~~~g~~~~~v 281 (858)
-++|||||||| .|-.+|.+--.+.- + .|.......+|=++|.|.|+..+-.++ ++++|..+... -
T Consensus 41 LiiAPTGsGKT-----eAAfLpil~~l~~~-~---~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vR---h 108 (814)
T COG1201 41 LIIAPTGSGKT-----EAAFLPVINELLSL-G---KGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVR---H 108 (814)
T ss_pred EEEcCCCCChH-----HHHHHHHHHHHHhc-c---CCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCcccee---c
Confidence 36799999999 44444433322211 0 111122345788999999998886665 35556555433 2
Q ss_pred eEEEeccce--eecceeEEEeecCccccCCCcc----CCCcccEE------------EecCCCCCchhhhhHHHHHHHHh
Q psy2470 282 GYMFRKGRM--KILVSKIFKMSQGKPSDSGVEP----ISQSYLVE------------LSILAPGGQDVIGEDMKAFAEQL 343 (858)
Q Consensus 282 G~~vr~~~~--~~~~t~I~v~TpGrLl~~~~~~----~L~~~~vl------------R~l~~~~~~d~ll~~lk~~~~~l 343 (858)
|-..+.+++ ..+-++|++.||+-|.-++..+ .|.++.++ |... ..+++.+- .
T Consensus 109 GDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~------Lsl~LeRL-~--- 178 (814)
T COG1201 109 GDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQ------LALSLERL-R--- 178 (814)
T ss_pred CCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchh------hhhhHHHH-H---
Confidence 322222222 2245899999999887644432 34444444 4433 22332222 2
Q ss_pred cccCCCCceEEEEeccc-CHHHHHHHhhcccCCCCcEEEecCe-ecceeEEEecCCcc---chHHHHHHHHHHHHhhCCC
Q psy2470 344 KPLKRTQLKLIISSATV-DAEEICQFYNISASSNATILSVKGH-LYPVSVYYSNDPVV---NYVQGVVDTAIKIHESMPV 418 (858)
Q Consensus 344 ~~~~~~~~q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~-~~~v~~~~~~~~~~---~~~~~~~~~l~~i~~~~~~ 418 (858)
.... +.|.|..|||. +.+..++|+..... .+.++.+.+. ...+++........ .........+.++.+++
T Consensus 179 -~l~~-~~qRIGLSATV~~~~~varfL~g~~~-~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~-- 253 (814)
T COG1201 179 -ELAG-DFQRIGLSATVGPPEEVAKFLVGFGD-PCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKH-- 253 (814)
T ss_pred -hhCc-ccEEEeehhccCCHHHHHHHhcCCCC-ceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhhc--
Confidence 1223 89999999999 88999999874210 2455555543 33344443332211 12234556666666654
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEE
Q psy2470 419 GDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVI 498 (858)
Q Consensus 419 g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VI 498 (858)
..+|||+||+..+|.++..|++.. +..+...||+++.++|..+.++|++|..|++|||.-.|-||||.+|+.||
T Consensus 254 ~ttLIF~NTR~~aE~l~~~L~~~~------~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVI 327 (814)
T COG1201 254 RTTLIFTNTRSGAERLAFRLKKLG------PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVI 327 (814)
T ss_pred CcEEEEEeChHHHHHHHHHHHHhc------CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEE
Confidence 479999999999999999999762 37788999999999999999999999999999999999999999999999
Q ss_pred cCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC----CceEEEeh
Q psy2470 499 DPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR----SGHVYRKN 546 (858)
Q Consensus 499 d~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g----~G~~~rL~ 546 (858)
. |. .|-|.+...||+||+|+.- +|..|...
T Consensus 328 q--------~~----------SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 328 Q--------LG----------SPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred E--------eC----------CcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 9 55 6788889999999999742 37777654
No 90
>PRK13766 Hef nuclease; Provisional
Probab=99.82 E-value=1.4e-19 Score=222.92 Aligned_cols=106 Identities=25% Similarity=0.396 Sum_probs=97.0
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCC--------CCHHHHHHhcCCCCCCcEEEEEecCcccc
Q psy2470 416 MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGS--------LPNNEQIKVFRPTPRAMRKIVIATNIAET 487 (858)
Q Consensus 416 ~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~--------l~q~~r~~v~~~f~~g~~kVlvATdvAer 487 (858)
.+.+++|||+++++.++.+++.|... ++.+..+||. +++.+|.++++.|++|..+|||||+++++
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~-------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~e 435 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKE-------GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEE 435 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhC-------CCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhc
Confidence 45789999999999999999999765 6777788875 99999999999999999999999999999
Q ss_pred cCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 488 SITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 488 gldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|+|+|++++||+ || .|.+...|+||+||+||.|+|.+|.|+
T Consensus 436 Gldi~~~~~VI~--------yd----------~~~s~~r~iQR~GR~gR~~~~~v~~l~ 476 (773)
T PRK13766 436 GLDIPSVDLVIF--------YE----------PVPSEIRSIQRKGRTGRQEEGRVVVLI 476 (773)
T ss_pred CCCcccCCEEEE--------eC----------CCCCHHHHHHHhcccCcCCCCEEEEEE
Confidence 999999999999 88 456788899999999999999999988
No 91
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.81 E-value=1.1e-19 Score=218.36 Aligned_cols=297 Identities=14% Similarity=0.099 Sum_probs=170.3
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
.-+.|+||||||.+++.++.. .+ .. | .++|++.||++++.|+++++.+.+|.++....++.+.
T Consensus 165 ~Ll~~~TGSGKT~v~l~~i~~---------~l---~~--g---~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~ 227 (679)
T PRK05580 165 FLLDGVTGSGKTEVYLQAIAE---------VL---AQ--G---KQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSD 227 (679)
T ss_pred EEEECCCCChHHHHHHHHHHH---------HH---Hc--C---CeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCH
Confidence 445699999999444322111 11 11 1 3589999999999999999988787665544222221
Q ss_pred EEecc---ceeecceeEEEeecCccccCCCccCCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 284 MFRKG---RMKILVSKIFKMSQGKPSDSGVEPISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 284 ~vr~~---~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
..+.+ ......++|+|+|++.+..-..+. ++-|| -+... .+...--.+++.... ....+.|+++
T Consensus 228 ~~r~~~~~~~~~g~~~IVVgTrsal~~p~~~l---~liVvDEeh~~s~~~---~~~p~y~~r~va~~r--a~~~~~~~il 299 (679)
T PRK05580 228 GERLDEWRKAKRGEAKVVIGARSALFLPFKNL---GLIIVDEEHDSSYKQ---QEGPRYHARDLAVVR--AKLENIPVVL 299 (679)
T ss_pred HHHHHHHHHHHcCCCCEEEeccHHhcccccCC---CEEEEECCCcccccc---CcCCCCcHHHHHHHH--hhccCCCEEE
Confidence 11111 111234799999999886421211 12222 11110 000000012221000 2346789999
Q ss_pred EecccCHHHHHHHhhcccCCCCcEEEecCee----cc-eeEEEecCCcc-----chHHHHHHHHHHHHhhCCCCCEEEEc
Q psy2470 356 SSATVDAEEICQFYNISASSNATILSVKGHL----YP-VSVYYSNDPVV-----NYVQGVVDTAIKIHESMPVGDILAFV 425 (858)
Q Consensus 356 ~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~----~~-v~~~~~~~~~~-----~~~~~~~~~l~~i~~~~~~g~iLVFl 425 (858)
+|||.+.+.+...... ....+..+.+. .| +++.-...... ..-....+.+.+.+. ...++|||+
T Consensus 300 ~SATps~~s~~~~~~g----~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~--~g~qvll~~ 373 (679)
T PRK05580 300 GSATPSLESLANAQQG----RYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLE--RGEQVLLFL 373 (679)
T ss_pred EcCCCCHHHHHHHhcc----ceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHH--cCCeEEEEE
Confidence 9999988776554321 22333333221 11 22211111000 011222333333322 245899998
Q ss_pred CCH------------------------------------------------------------HHHHHHHHHHHHhccCC
Q psy2470 426 IGL------------------------------------------------------------EQIEHIIGILKQYHNQR 445 (858)
Q Consensus 426 ~t~------------------------------------------------------------~~i~~l~~~L~~~~~~~ 445 (858)
|.+ ..++++++.|++.
T Consensus 374 nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~---- 449 (679)
T PRK05580 374 NRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAEL---- 449 (679)
T ss_pred cCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHh----
Confidence 752 1455666666654
Q ss_pred CCcceEEEeccCCCCH--HHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEE--cCCCccceeccCCCCCCcceeee
Q psy2470 446 EDLKLLILPMHGSLPN--NEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVI--DPGFVKARWFNPNTLTNSLVVVP 521 (858)
Q Consensus 446 ~~~~~~v~~LHg~l~q--~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VI--d~g~~k~~~yd~~~g~~~l~~~p 521 (858)
.|+..+..+||++.+ +++.++++.|++|+..|||+|+++++|+|+|+|++|+ | .|.......+.-.-
T Consensus 450 -fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~--------aD~~l~~pdfra~E 520 (679)
T PRK05580 450 -FPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLD--------ADLGLFSPDFRASE 520 (679)
T ss_pred -CCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEc--------CchhccCCccchHH
Confidence 257889999999975 5789999999999999999999999999999999995 6 33222221111111
Q ss_pred cCHhhHHHhhcccCCCCC-ceEEE
Q psy2470 522 ISKASAVQRAGRAGRVRS-GHVYR 544 (858)
Q Consensus 522 is~~~~~qR~GRaGR~g~-G~~~r 544 (858)
..-..+.|++|||||.+. |.|+-
T Consensus 521 r~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 521 RTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred HHHHHHHHHHhhccCCCCCCEEEE
Confidence 224678999999999775 99883
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=1.7e-19 Score=209.37 Aligned_cols=291 Identities=12% Similarity=0.060 Sum_probs=171.2
Q ss_pred ccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEe
Q psy2470 207 IGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFR 286 (858)
Q Consensus 207 ~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr 286 (858)
.|+||||||.+++.++.. .+ +. | .++|+++|++.++.|+++++.+.+|.++...+++.+-..+
T Consensus 3 ~g~TGsGKT~v~l~~i~~---------~l---~~--g---~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er 65 (505)
T TIGR00595 3 FGVTGSGKTEVYLQAIEK---------VL---AL--G---KSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEK 65 (505)
T ss_pred cCCCCCCHHHHHHHHHHH---------HH---Hc--C---CeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHH
Confidence 589999999554432211 11 11 1 2589999999999999999987777655433222221111
Q ss_pred cc---ceeecceeEEEeecCccccCCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 287 KG---RMKILVSKIFKMSQGKPSDSGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 287 ~~---~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
.+ +......+|+|+|++.+..- +.++..| -+... .+...--.+++...+ ....+.++|++
T Consensus 66 ~~~~~~~~~g~~~IVVGTrsalf~p-----~~~l~lIIVDEeh~~sykq---~~~p~y~ar~~a~~r--a~~~~~~vil~ 135 (505)
T TIGR00595 66 LQAWRKVKNGEILVVIGTRSALFLP-----FKNLGLIIVDEEHDSSYKQ---EEGPRYHARDVAVYR--AKKFNCPVVLG 135 (505)
T ss_pred HHHHHHHHcCCCCEEECChHHHcCc-----ccCCCEEEEECCCcccccc---ccCCCCcHHHHHHHH--HHhcCCCEEEE
Confidence 10 11123478999999987642 2233333 11110 011000011111000 22357899999
Q ss_pred ecccCHHHHHHHhhcccCCCCcEEEecCe----ecc-eeEEEecCCc--cchHHHHHHHHHHHHhhCCCCCEEEEcCCHH
Q psy2470 357 SATVDAEEICQFYNISASSNATILSVKGH----LYP-VSVYYSNDPV--VNYVQGVVDTAIKIHESMPVGDILAFVIGLE 429 (858)
Q Consensus 357 SAT~~~~~~~~~~~~~~~~~~~~i~v~g~----~~~-v~~~~~~~~~--~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~ 429 (858)
|||.+.+.+...... ....+..+.+ ..| +++.-..... ........+.+.+.+.. .+++|||+|++.
T Consensus 136 SATPsles~~~~~~g----~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~--g~qvLvflnrrG 209 (505)
T TIGR00595 136 SATPSLESYHNAKQK----AYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAA--GEQSILFLNRRG 209 (505)
T ss_pred eCCCCHHHHHHHhcC----CeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHc--CCcEEEEEeCCc
Confidence 999988776654331 1122222211 111 2221111110 01112333444444332 568999987653
Q ss_pred H------------------------------------------------------------HHHHHHHHHHhccCCCCcc
Q psy2470 430 Q------------------------------------------------------------IEHIIGILKQYHNQREDLK 449 (858)
Q Consensus 430 ~------------------------------------------------------------i~~l~~~L~~~~~~~~~~~ 449 (858)
- ++++.+.|++. .|+
T Consensus 210 ya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~-----fp~ 284 (505)
T TIGR00595 210 YSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKL-----FPG 284 (505)
T ss_pred CCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhh-----CCC
Confidence 2 57777777765 257
Q ss_pred eEEEeccCCCCHHHH--HHhcCCCCCCcEEEEEecCcccccCCCCCeeEEE--cCCCccceeccCCCCCCcceeeecCHh
Q psy2470 450 LLILPMHGSLPNNEQ--IKVFRPTPRAMRKIVIATNIAETSITIPGIVYVI--DPGFVKARWFNPNTLTNSLVVVPISKA 525 (858)
Q Consensus 450 ~~v~~LHg~l~q~~r--~~v~~~f~~g~~kVlvATdvAergldIp~V~~VI--d~g~~k~~~yd~~~g~~~l~~~pis~~ 525 (858)
..+..+|+++++.++ .++++.|++|+.+|||+|+++++|+|+|+|++|+ | +|.......+.-.--.-.
T Consensus 285 ~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~--------aD~~l~~pd~ra~E~~~~ 356 (505)
T TIGR00595 285 ARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD--------ADSGLHSPDFRAAERGFQ 356 (505)
T ss_pred CcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc--------CcccccCcccchHHHHHH
Confidence 899999999988776 8899999999999999999999999999999885 7 553333222211112345
Q ss_pred hHHHhhcccCCCCC-ceEE
Q psy2470 526 SAVQRAGRAGRVRS-GHVY 543 (858)
Q Consensus 526 ~~~qR~GRaGR~g~-G~~~ 543 (858)
.+.|++|||||.+. |.++
T Consensus 357 ll~q~~GRagR~~~~g~vi 375 (505)
T TIGR00595 357 LLTQVAGRAGRAEDPGQVI 375 (505)
T ss_pred HHHHHHhccCCCCCCCEEE
Confidence 68999999999876 8888
No 93
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.78 E-value=3.5e-18 Score=187.99 Aligned_cols=108 Identities=24% Similarity=0.355 Sum_probs=90.5
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceE--EEe-----ccCCCCHHHHHHhcCCCCCCcEEEEEecCccccc
Q psy2470 416 MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLL--ILP-----MHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETS 488 (858)
Q Consensus 416 ~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~--v~~-----LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAerg 488 (858)
.+..++|||..-++.++.+.+.|.+... ... .+. --.||+|.+|..++++|++|..+|||||.|+|-|
T Consensus 364 ~~~~RvIVFT~yRdTae~i~~~L~~~~~-----~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEG 438 (542)
T COG1111 364 NGDSRVIVFTEYRDTAEEIVNFLKKIGI-----KARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEG 438 (542)
T ss_pred CCCceEEEEehhHhHHHHHHHHHHhcCC-----cceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEccccccc
Confidence 3456899999999999999999986521 111 111 1257999999999999999999999999999999
Q ss_pred CCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 489 ITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 489 ldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
||||++++||- |+|- -|.--++||.|||||..+|.+|-|.
T Consensus 439 LDIp~vDlVif--------YEpv----------pSeIR~IQR~GRTGR~r~Grv~vLv 478 (542)
T COG1111 439 LDIPEVDLVIF--------YEPV----------PSEIRSIQRKGRTGRKRKGRVVVLV 478 (542)
T ss_pred CCCCcccEEEE--------ecCC----------cHHHHHHHhhCccccCCCCeEEEEE
Confidence 99999999998 8832 3455689999999999999999988
No 94
>KOG3264|consensus
Probab=99.76 E-value=8.3e-19 Score=167.57 Aligned_cols=184 Identities=53% Similarity=0.894 Sum_probs=152.1
Q ss_pred CchhhhHHhhcccccchHHHHHHHhhhhhcccccCCCCcccccccchhccCCCC-hhHHHHHHHhcCCCCccccchhccc
Q psy2470 131 HPIHAKVLLSSGSVLDSAVEILLHRLRGLCDNVDSGPETFHDHEMCFSIRGNQT-QPLLLRVRRALDFPDMPYQLRYIGQ 209 (858)
Q Consensus 131 ~p~~~~~l~~s~s~~~~~~~~~~~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~ 209 (858)
.|..+..++.+||+++.+++++.+|++|+||+.+ |+|++||++|++++++. .+...|+||.++++..|||++
T Consensus 14 ~~~~~mEcvlqGsI~~~~ve~Le~rL~GLCd~~~---E~f~dhEmcfslr~~~~~~~~l~R~~r~ldr~~~~wqlk---- 86 (221)
T KOG3264|consen 14 TPYMSMECVLQGSILDQHVEALEHRLQGLCDNQR---ERFRDHEMCFSLRPNLAVVPSLLRLRRDLDRPEAPWQLK---- 86 (221)
T ss_pred cccccchhheechHhhcchHHHHHHHHhccccch---hhhhhhhheeeecCCcCccHHHHHHHHhccCCCCceEEE----
Confidence 3667788999999999999999999999999976 79999999999999998 589999999999998888888
Q ss_pred cCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccc
Q psy2470 210 PEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGR 289 (858)
Q Consensus 210 TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~ 289 (858)
|+|+++.| +..+++||+.+...++++.+.+++.++|.++..+|..+|+..++..
T Consensus 87 ------------------------ylG~pe~g--d~~~ptlVRn~id~~~S~n~l~~~~~lG~rlDhEy~akG~lf~kgr 140 (221)
T KOG3264|consen 87 ------------------------YLGGPERG--DDQRPTLVRNCIDSAVSKNALRFLYELGFRLDHEYLAKGFLFRKGR 140 (221)
T ss_pred ------------------------ecCCCCcc--cccccHHHHHHHHHHHhhhHHHHHHHhcccccHHHHhhhhhhcccc
Confidence 88999854 8888999999999999999999999999999999999999999888
Q ss_pred eeecceeEEE-eecCccccCCCccCCCcccEEEecCCCCCch--hhhhHHHHHHHHhcccC
Q psy2470 290 MKILVSKIFK-MSQGKPSDSGVEPISQSYLVELSILAPGGQD--VIGEDMKAFAEQLKPLK 347 (858)
Q Consensus 290 ~~~~~t~I~v-~TpGrLl~~~~~~~L~~~~vlR~l~~~~~~d--~ll~~lk~~~~~l~~~~ 347 (858)
.+.......+ --||.--.....+.-.+|.+.-++.+|+++| -.-.-++.+.++|+|..
T Consensus 141 mkI~vs~l~~~~~pg~~d~~s~~pvS~sylvelsV~aPa~~E~~~va~~mr~FaeqL~PLV 201 (221)
T KOG3264|consen 141 MKISVSKLSVIKVPGVHDIDSAEPVSPSYLVELSVVAPAGQENYEVAAAMRSFAEQLKPLV 201 (221)
T ss_pred eEEEEEEEEEeccCcccccccccccCcccEEEEEEecCCccchhhHHHHHHHHHHHhhhhh
Confidence 6554332222 2577544333445555777777888888888 44566777777887654
No 95
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.75 E-value=1.4e-17 Score=191.15 Aligned_cols=279 Identities=16% Similarity=0.112 Sum_probs=176.4
Q ss_pred ccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHH-HHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 207 IGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVAC-SCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 207 ~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la-~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+=+||.||+ +.|++|.+.. .| .+||++|---|- -|+.. + +..|...... =+...
T Consensus 38 vmPTGgGKS-----lCyQiPAll~---------~G------~TLVVSPLiSLM~DQV~~-l-~~~Gi~A~~l---nS~l~ 92 (590)
T COG0514 38 VMPTGGGKS-----LCYQIPALLL---------EG------LTLVVSPLISLMKDQVDQ-L-EAAGIRAAYL---NSTLS 92 (590)
T ss_pred EccCCCCcc-----hHhhhHHHhc---------CC------CEEEECchHHHHHHHHHH-H-HHcCceeehh---hcccC
Confidence 458999999 8899997773 22 479999966554 34422 2 4445432211 00011
Q ss_pred eccce------eecceeEEEeecCcccc--CCCccCCC--cccEE---EecCCCCCchhhhhHHHHHHHHhcccCCCCce
Q psy2470 286 RKGRM------KILVSKIFKMSQGKPSD--SGVEPISQ--SYLVE---LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLK 352 (858)
Q Consensus 286 r~~~~------~~~~t~I~v~TpGrLl~--~~~~~~L~--~~~vl---R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q 352 (858)
+.+.. .....+|+|.+|-||.. ...-..-. ...+| ..+. .-|-||-....+. . .+.... ++..
T Consensus 93 ~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiS-qWGhdFRP~Y~~l-g-~l~~~~-~~~p 168 (590)
T COG0514 93 REERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCIS-QWGHDFRPDYRRL-G-RLRAGL-PNPP 168 (590)
T ss_pred HHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHh-hcCCccCHhHHHH-H-HHHhhC-CCCC
Confidence 11111 11236899999999987 21111111 22233 1111 0113444333221 1 111122 3678
Q ss_pred EEEEecccCHH---HHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHH
Q psy2470 353 LIISSATVDAE---EICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLE 429 (858)
Q Consensus 353 ~il~SAT~~~~---~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~ 429 (858)
++.++||-+.. .+.+.+.. +.+.+.+.+-.. -.++|......+- ......+.. ......+..||||.|+.
T Consensus 169 ~~AlTATA~~~v~~DI~~~L~l----~~~~~~~~sfdR-pNi~~~v~~~~~~-~~q~~fi~~-~~~~~~~~GIIYc~sRk 241 (590)
T COG0514 169 VLALTATATPRVRDDIREQLGL----QDANIFRGSFDR-PNLALKVVEKGEP-SDQLAFLAT-VLPQLSKSGIIYCLTRK 241 (590)
T ss_pred EEEEeCCCChHHHHHHHHHhcC----CCcceEEecCCC-chhhhhhhhcccH-HHHHHHHHh-hccccCCCeEEEEeeHH
Confidence 89999998543 34444442 222222221110 1112221111111 111112222 12445677899999999
Q ss_pred HHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceecc
Q psy2470 430 QIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFN 509 (858)
Q Consensus 430 ~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd 509 (858)
+++.+++.|+.. |+.+..+||||+.++|..+.+.|-++..+|+|||+--..|||-|||++||+ ||
T Consensus 242 ~~E~ia~~L~~~-------g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH--------~~ 306 (590)
T COG0514 242 KVEELAEWLRKN-------GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH--------YD 306 (590)
T ss_pred hHHHHHHHHHHC-------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE--------ec
Confidence 999999999987 899999999999999999999999999999999999999999999999999 77
Q ss_pred CCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 510 PNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 510 ~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
.|-|.++|.|=+|||||-|. ..|+-||
T Consensus 307 ----------lP~s~EsYyQE~GRAGRDG~~a~aill~ 334 (590)
T COG0514 307 ----------LPGSIESYYQETGRAGRDGLPAEAILLY 334 (590)
T ss_pred ----------CCCCHHHHHHHHhhccCCCCcceEEEee
Confidence 78999999999999999997 9999999
No 96
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=2.4e-17 Score=196.11 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEe
Q psy2470 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIA 481 (858)
Q Consensus 402 ~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvA 481 (858)
..+.++.+...|.. +.++|||++|.+..+.+++.|.+. +++...|||.+.+.++..+.++|++|. |+||
T Consensus 430 ~~av~~~i~~~~~~--g~PVLVgt~Sie~sE~ls~~L~~~-------gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIA 498 (896)
T PRK13104 430 FQAIIEDVRECGVR--KQPVLVGTVSIEASEFLSQLLKKE-------NIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIA 498 (896)
T ss_pred HHHHHHHHHHHHhC--CCCEEEEeCcHHHHHHHHHHHHHc-------CCCeEeecCCCChHHHHHHHhCCCCCc--EEEe
Confidence 34455555555543 678999999999999999999987 899999999999999999999999994 9999
Q ss_pred cCcccccCCCC
Q psy2470 482 TNIAETSITIP 492 (858)
Q Consensus 482 TdvAergldIp 492 (858)
||+|+||+||.
T Consensus 499 TNmAGRGtDI~ 509 (896)
T PRK13104 499 TNMAGRGTDIV 509 (896)
T ss_pred ccCccCCccee
Confidence 99999999986
No 97
>PRK09694 helicase Cas3; Provisional
Probab=99.73 E-value=3.9e-17 Score=198.06 Aligned_cols=98 Identities=19% Similarity=0.280 Sum_probs=81.0
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHH----HHhcCCC-CCCcE---EEEEecCccccc
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQ----IKVFRPT-PRAMR---KIVIATNIAETS 488 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r----~~v~~~f-~~g~~---kVlvATdvAerg 488 (858)
..+++|||+||.++++.+++.|++.. .++..+..+||.+++.+| .++++.| ++|++ +|||||+|+|+|
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~----~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~G 634 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELN----NTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQS 634 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhC----CCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhhe
Confidence 46789999999999999999998641 124679999999999999 4567778 66764 799999999999
Q ss_pred CCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC
Q psy2470 489 ITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS 539 (858)
Q Consensus 489 ldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~ 539 (858)
||| ++++||. +. .| .+.++||+||+||.+.
T Consensus 635 LDI-d~DvlIt--------dl----------aP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 635 LDL-DFDWLIT--------QL----------CP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred eec-CCCeEEE--------CC----------CC--HHHHHHHHhccCCCCC
Confidence 999 6898887 22 34 5799999999999863
No 98
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.73 E-value=2.7e-17 Score=200.22 Aligned_cols=328 Identities=18% Similarity=0.102 Sum_probs=201.4
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcC-ccEeeeee
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRM-DFEYISRG 282 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~-g~~~~~vG 282 (858)
+-++..|||||| .+|.+|.+-..++ ++..++|++-||..||..=++++.+.....- +.. ++
T Consensus 88 vvVtTgTgSGKT-----e~FllPIld~~l~----------~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~---~~ 149 (851)
T COG1205 88 VVVTTGTGSGKT-----ESFLLPILDHLLR----------DPSARALLLYPTNALANDQAERLRELISDLPGKVT---FG 149 (851)
T ss_pred EEEECCCCCchh-----HHHHHHHHHHHhh----------CcCccEEEEechhhhHhhHHHHHHHHHHhCCCcce---ee
Confidence 346799999999 8888885553222 2223689999999999766676654432111 111 11
Q ss_pred -E--EEeccce---eecceeEEEeecCcccc-CCCc-c----CCC--cccEE------EecCCCCCchhhhhHHHHHHHH
Q psy2470 283 -Y--MFRKGRM---KILVSKIFKMSQGKPSD-SGVE-P----ISQ--SYLVE------LSILAPGGQDVIGEDMKAFAEQ 342 (858)
Q Consensus 283 -~--~vr~~~~---~~~~t~I~v~TpGrLl~-~~~~-~----~L~--~~~vl------R~l~~~~~~d~ll~~lk~~~~~ 342 (858)
| ....+.. ....++|++.||-+|-. ++.. . .++ +|-|+ |... |+++ ..+++.+...
T Consensus 150 ~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~---GS~v-A~llRRL~~~ 225 (851)
T COG1205 150 RYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQ---GSEV-ALLLRRLLRR 225 (851)
T ss_pred eecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccc---hhHH-HHHHHHHHHH
Confidence 1 1222222 23568999999999876 3322 1 223 44444 6665 3444 4455555533
Q ss_pred hcccCCCCceEEEEeccc-CHHHHHHHhhcccCCCCcEEE-ecCeecc--eeEEEecCC---------ccchHHHHHHHH
Q psy2470 343 LKPLKRTQLKLIISSATV-DAEEICQFYNISASSNATILS-VKGHLYP--VSVYYSNDP---------VVNYVQGVVDTA 409 (858)
Q Consensus 343 l~~~~~~~~q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~-v~g~~~~--v~~~~~~~~---------~~~~~~~~~~~l 409 (858)
+ .....+.|+|..|||+ +...++.-+.. ..... +.+...| -..+....+ ..+.. .....+
T Consensus 226 ~-~~~~~~~q~i~~SAT~~np~e~~~~l~~-----~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~-~~~~~~ 298 (851)
T COG1205 226 L-RRYGSPLQIICTSATLANPGEFAEELFG-----RDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSAL-AELATL 298 (851)
T ss_pred H-hccCCCceEEEEeccccChHHHHHHhcC-----CcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchH-HHHHHH
Confidence 3 2344689999999999 66666654431 22222 3322221 222222222 11111 112222
Q ss_pred HHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhcc-CCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCccccc
Q psy2470 410 IKIHESMPVGDILAFVIGLEQIEHIIGILKQYHN-QREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETS 488 (858)
Q Consensus 410 ~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~-~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAerg 488 (858)
...... ..-+.|||+.+++.++.+....++... ..+.-...+...||++..++|.++...|+.|+.++++|||-+|-|
T Consensus 299 ~~~~~~-~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Alelg 377 (851)
T COG1205 299 AALLVR-NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELG 377 (851)
T ss_pred HHHHHH-cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhc
Confidence 222211 245789999999999999744432111 001123568889999999999999999999999999999999999
Q ss_pred CCCCCeeEEEcCCCccceeccCCCCCCcceeeec-CHhhHHHhhcccCCCCC-ceEEEeh------hhHhhhhhhhhccC
Q psy2470 489 ITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPI-SKASAVQRAGRAGRVRS-GHVYRKN------FMYNRLFIHFCVSR 560 (858)
Q Consensus 489 ldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pi-s~~~~~qR~GRaGR~g~-G~~~rL~------~~~~~l~~~~~~~~ 560 (858)
+||-+++.||.+|+ |. |..++.||+|||||.+. +..+-.+ ..|...++++.+ .
T Consensus 378 idiG~ldavi~~g~------------------P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~-~ 438 (851)
T COG1205 378 IDIGSLDAVIAYGY------------------PGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE-T 438 (851)
T ss_pred eeehhhhhHhhcCC------------------CCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh-c
Confidence 99999999999773 55 78899999999999983 4444433 333344443322 1
Q ss_pred CCCCCCCCCCccccCcccchhhhH
Q psy2470 561 NIPTIPNDPKDVKCDVMFHKVFFS 584 (858)
Q Consensus 561 ~~p~~~~~Pei~r~~L~~~~~l~~ 584 (858)
. .+.+|..+.+..++..+..
T Consensus 439 ---~-~~~~e~~~~~~~n~~~l~~ 458 (851)
T COG1205 439 ---G-FGPVESVRVDDNNEYLLDG 458 (851)
T ss_pred ---c-cCcccccccCCCCcchhhh
Confidence 1 1237777777776666653
No 99
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=9.7e-17 Score=189.72 Aligned_cols=101 Identities=17% Similarity=0.233 Sum_probs=85.5
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCC-cEEEEEecCcccccCCCCCee
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRA-MRKIVIATNIAETSITIPGIV 495 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g-~~kVlvATdvAergldIp~V~ 495 (858)
...++|||+...+.++.+++.|. +..+||++++.+|.++++.|+.| ..++||+|+|+.+|||+|+++
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L~------------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~ 562 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKLG------------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEAN 562 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHcC------------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCC
Confidence 46789999999988888877662 23479999999999999999865 889999999999999999999
Q ss_pred EEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceE-------EEeh
Q psy2470 496 YVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHV-------YRKN 546 (858)
Q Consensus 496 ~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~-------~rL~ 546 (858)
+||+ +++.. -|..+|+||.||++|.++ |.+ |+|.
T Consensus 563 vvI~--------~s~~~---------gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lV 604 (732)
T TIGR00603 563 VLIQ--------ISSHY---------GSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLV 604 (732)
T ss_pred EEEE--------eCCCC---------CCHHHHHHHhcccccCCCCCccccccceEEEEe
Confidence 9999 66222 378999999999999987 454 6776
No 100
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=8.4e-17 Score=190.63 Aligned_cols=103 Identities=22% Similarity=0.234 Sum_probs=94.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCC---CC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITI---PG 493 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldI---p~ 493 (858)
.+.++|||+++.+.++.+++.|.+. +++...|||++.+.++..+.+++++|. |+||||+|+||.|| ++
T Consensus 439 ~g~pvLI~t~si~~se~ls~~L~~~-------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~ 509 (796)
T PRK12906 439 KGQPVLVGTVAIESSERLSHLLDEA-------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPG 509 (796)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHC-------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcc
Confidence 4678999999999999999999987 888999999999999999999998887 99999999999999 49
Q ss_pred ee-----EEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 494 IV-----YVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 494 V~-----~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|. |||+ |+ .|.|...+.||.|||||.|. |.+..+.
T Consensus 510 V~~~GGLhVI~--------te----------~pes~ri~~Ql~GRtGRqG~~G~s~~~~ 550 (796)
T PRK12906 510 VKELGGLAVIG--------TE----------RHESRRIDNQLRGRSGRQGDPGSSRFYL 550 (796)
T ss_pred hhhhCCcEEEe--------ee----------cCCcHHHHHHHhhhhccCCCCcceEEEE
Confidence 99 9999 55 68889999999999999997 9987766
No 101
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=8e-17 Score=191.56 Aligned_cols=67 Identities=19% Similarity=0.180 Sum_probs=62.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIP 492 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp 492 (858)
.+.++|||++|.++++.+++.|.+. ++++..|||. |.+|...+..|+.+...|+||||+|+||+||+
T Consensus 429 ~grpVLIft~Si~~se~Ls~~L~~~-------gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~ 495 (830)
T PRK12904 429 KGQPVLVGTVSIEKSELLSKLLKKA-------GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIK 495 (830)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHC-------CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCcc
Confidence 4668999999999999999999987 8999999995 88999999999999999999999999999987
No 102
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.65 E-value=1.9e-15 Score=173.13 Aligned_cols=310 Identities=15% Similarity=0.117 Sum_probs=193.6
Q ss_pred cccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEc
Q psy2470 173 HEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVR 252 (858)
Q Consensus 173 ~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl 252 (858)
....|+|...|...+ .....-|..+. |-.=-+.|..|||||++.+.+++.. .+.| -++..+
T Consensus 257 ~~LPF~LT~aQ~~vi-~EI~~Dl~~~~-~M~RLlQGDVGSGKTvVA~laml~a------------i~~G-----~Q~ALM 317 (677)
T COG1200 257 AALPFKLTNAQKRVI-KEILADLASPV-PMNRLLQGDVGSGKTVVALLAMLAA------------IEAG-----YQAALM 317 (677)
T ss_pred HhCCCCccHHHHHHH-HHHHhhhcCch-hhHHHhccCcCCCHHHHHHHHHHHH------------HHcC-----CeeEEe
Confidence 456677777665433 33444443322 3444457999999995554444332 1222 257899
Q ss_pred cchHHHHHHHHHHHHH---HhCCcCccEeeeeeEEEeccc------eeecceeEEEeecCccccCCCccCCCcccEEEec
Q psy2470 253 SSIDVACSCTVVEFLT---EMGCRMDFEYISRGYMFRKGR------MKILVSKIFKMSQGKPSDSGVEPISQSYLVELSI 323 (858)
Q Consensus 253 ~PtR~la~qva~~v~~---e~g~~~g~~~~~vG~~vr~~~------~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vlR~l 323 (858)
+||.+||.|-+..+.+ .+|.+++.. .|-..+... ..+...+|+|+|.--+-| +..+++...+ .+
T Consensus 318 APTEILA~QH~~~~~~~l~~~~i~V~lL---tG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd---~V~F~~LgLV-Ii 390 (677)
T COG1200 318 APTEILAEQHYESLRKWLEPLGIRVALL---TGSLKGKARKEILEQLASGEIDIVVGTHALIQD---KVEFHNLGLV-II 390 (677)
T ss_pred ccHHHHHHHHHHHHHHHhhhcCCeEEEe---ecccchhHHHHHHHHHhCCCCCEEEEcchhhhc---ceeecceeEE-EE
Confidence 9999999999877654 455565555 442222211 122458999999886644 2233333322 11
Q ss_pred CCCCCchhhhhHHHHHHHHhcccCCC-CceEEEEecccCHHHHHH-HhhcccCCCCcEE-EecCeecceeEEEecCCccc
Q psy2470 324 LAPGGQDVIGEDMKAFAEQLKPLKRT-QLKLIISSATVDAEEICQ-FYNISASSNATIL-SVKGHLYPVSVYYSNDPVVN 400 (858)
Q Consensus 324 ~~~~~~d~ll~~lk~~~~~l~~~~~~-~~q~il~SAT~~~~~~~~-~~~~~~~~~~~~i-~v~g~~~~v~~~~~~~~~~~ 400 (858)
| .-.-.|+..... |. .... ...+++||||.-...++= .|+.- +..+| +.|....|+..+.......+
T Consensus 391 D----EQHRFGV~QR~~--L~-~KG~~~Ph~LvMTATPIPRTLAlt~fgDl---dvS~IdElP~GRkpI~T~~i~~~~~~ 460 (677)
T COG1200 391 D----EQHRFGVHQRLA--LR-EKGEQNPHVLVMTATPIPRTLALTAFGDL---DVSIIDELPPGRKPITTVVIPHERRP 460 (677)
T ss_pred e----ccccccHHHHHH--HH-HhCCCCCcEEEEeCCCchHHHHHHHhccc---cchhhccCCCCCCceEEEEeccccHH
Confidence 2 122244433322 21 1222 457899999996665553 34310 22222 34444468888777654333
Q ss_pred hHHHHHHHHHHHHhhCCCCCEEEEcCCHH--------HHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCC
Q psy2470 401 YVQGVVDTAIKIHESMPVGDILAFVIGLE--------QIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTP 472 (858)
Q Consensus 401 ~~~~~~~~l~~i~~~~~~g~iLVFl~t~~--------~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~ 472 (858)
..++.+..-+. .+.++-|-||=.+ .++.+++.|+.. .+++.+.-+||.|+.++...|++.|+
T Consensus 461 ---~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~-----~~~~~vgL~HGrm~~~eKd~vM~~Fk 530 (677)
T COG1200 461 ---EVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSF-----LPELKVGLVHGRMKPAEKDAVMEAFK 530 (677)
T ss_pred ---HHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHH-----cccceeEEEecCCChHHHHHHHHHHH
Confidence 33344443333 3678888887654 445566666643 35889999999999999999999999
Q ss_pred CCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccC-CCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 473 RAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNP-NTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 473 ~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~-~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+|+.+|||||.|.|-|||+|+-++-|= +|+ |-|. ++.-|=.||.||.+. +.|+-+|
T Consensus 531 ~~e~~ILVaTTVIEVGVdVPnATvMVI--------e~AERFGL----------aQLHQLRGRVGRG~~qSyC~Ll~ 588 (677)
T COG1200 531 EGEIDILVATTVIEVGVDVPNATVMVI--------ENAERFGL----------AQLHQLRGRVGRGDLQSYCVLLY 588 (677)
T ss_pred cCCCcEEEEeeEEEecccCCCCeEEEE--------echhhhhH----------HHHHHhccccCCCCcceEEEEEe
Confidence 999999999999999999999997663 332 3454 445589999999876 9999998
No 103
>KOG0354|consensus
Probab=99.65 E-value=2.6e-15 Score=174.44 Aligned_cols=113 Identities=23% Similarity=0.255 Sum_probs=90.7
Q ss_pred hCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEecc----CCCCHHHHHHhcCCCCCCcEEEEEecCcccccCC
Q psy2470 415 SMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMH----GSLPNNEQIKVFRPTPRAMRKIVIATNIAETSIT 490 (858)
Q Consensus 415 ~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LH----g~l~q~~r~~v~~~f~~g~~kVlvATdvAergld 490 (858)
..+..++|||+.+++.++.+.+.|.+.....-.+.+-+..=+ .+|+|.+|..++++|++|..+|||||.|||=|||
T Consensus 410 ~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLD 489 (746)
T KOG0354|consen 410 QNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLD 489 (746)
T ss_pred cCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCC
Confidence 345678999999999999999999853222101122222111 4899999999999999999999999999999999
Q ss_pred CCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 491 IPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 491 Ip~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|+.++.||- ||.. .+.-..+||.|| ||+..|.|+-|+
T Consensus 490 I~ec~lVIc--------Yd~~----------snpIrmIQrrGR-gRa~ns~~vll~ 526 (746)
T KOG0354|consen 490 IGECNLVIC--------YDYS----------SNPIRMVQRRGR-GRARNSKCVLLT 526 (746)
T ss_pred cccccEEEE--------ecCC----------ccHHHHHHHhcc-ccccCCeEEEEE
Confidence 999999999 7733 345568899999 999999999998
No 104
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=3.6e-15 Score=177.17 Aligned_cols=81 Identities=19% Similarity=0.186 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEE
Q psy2470 401 YVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVI 480 (858)
Q Consensus 401 ~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlv 480 (858)
+..+.++.+..++.. +.+||||+++.+..+.+++.|.+. ++....|||..++.++..+.+.|++|. |+|
T Consensus 434 K~~Aii~ei~~~~~~--GrpVLV~t~sv~~se~ls~~L~~~-------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtI 502 (908)
T PRK13107 434 KYQAIIKDIKDCRER--GQPVLVGTVSIEQSELLARLMVKE-------KIPHEVLNAKFHEREAEIVAQAGRTGA--VTI 502 (908)
T ss_pred HHHHHHHHHHHHHHc--CCCEEEEeCcHHHHHHHHHHHHHC-------CCCeEeccCcccHHHHHHHHhCCCCCc--EEE
Confidence 344555666666654 568999999999999999999987 889999999999999999999999998 999
Q ss_pred ecCcccccCCCC
Q psy2470 481 ATNIAETSITIP 492 (858)
Q Consensus 481 ATdvAergldIp 492 (858)
|||+|+||.||.
T Consensus 503 ATnmAGRGTDIk 514 (908)
T PRK13107 503 ATNMAGRGTDIV 514 (908)
T ss_pred ecCCcCCCccee
Confidence 999999999986
No 105
>KOG0951|consensus
Probab=99.59 E-value=3.3e-14 Score=168.51 Aligned_cols=351 Identities=15% Similarity=0.123 Sum_probs=205.6
Q ss_pred CCcccccccchhccCCCC------------hhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccc
Q psy2470 167 PETFHDHEMCFSIRGNQT------------QPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRY 234 (858)
Q Consensus 167 ~~~f~~~e~~~~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~ 234 (858)
|..|+..|-...+...+. +++..++.-+--.. .=++...||||+|||.+.+.-+.+--... ++
T Consensus 281 ~~pf~~~Ekl~~iselP~Wnq~aF~g~~sLNrIQS~v~daAl~~--~EnmLlCAPTGaGKTNVAvLtiLqel~~h--~r- 355 (1674)
T KOG0951|consen 281 YFPFHKEEKLVKISELPKWNQPAFFGKQSLNRIQSKVYDAALRG--DENMLLCAPTGAGKTNVAVLTILQELGNH--LR- 355 (1674)
T ss_pred CCCCCccceeEeecCCcchhhhhcccchhhhHHHHHHHHHHhcC--cCcEEEeccCCCCchHHHHHHHHHHHhcc--cc-
Confidence 357777777777666521 22333333322111 23466789999999966665443322111 11
Q ss_pred cCCCCCCCCCCcc-CEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccc---eeecceeEEEeecCcccc-CC
Q psy2470 235 IGQPEMGVGDKAR-PTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGR---MKILVSKIFKMSQGKPSD-SG 309 (858)
Q Consensus 235 l~~~~~g~g~~~~-~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~---~~~~~t~I~v~TpGrLl~-~~ 309 (858)
+.|+-.-.. .+.=+.|...|++.....+++-+. ..|.+ |+-..+... .....|+|+|+||-.--- -.
T Consensus 356 ----~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla-~~GI~---V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITR 427 (1674)
T KOG0951|consen 356 ----EDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA-PLGIT---VLELTGDSQLGKEQIEETQVIVTTPEKWDIITR 427 (1674)
T ss_pred ----cccceecccceEEEEeeHHHHHHHHHHHHHhhcc-ccCcE---EEEecccccchhhhhhcceeEEeccchhhhhhc
Confidence 111111111 234478988888777666654321 23333 432222211 112569999999985422 12
Q ss_pred CccCCC-----cccEE---EecCCCCCchhhhhHHHHHHHHhcc--cCCCCceEEEEeccc-CHHHHHHHhhcccCCCCc
Q psy2470 310 VEPISQ-----SYLVE---LSILAPGGQDVIGEDMKAFAEQLKP--LKRTQLKLIISSATV-DAEEICQFYNISASSNAT 378 (858)
Q Consensus 310 ~~~~L~-----~~~vl---R~l~~~~~~d~ll~~lk~~~~~l~~--~~~~~~q~il~SAT~-~~~~~~~~~~~~~~~~~~ 378 (858)
++.+.. +..++ .++. .|=-.-+...+....+. ......+++.+|||+ |-+..+.|+.. +++
T Consensus 428 k~gdraY~qlvrLlIIDEIHLLh----DdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v----~~~ 499 (1674)
T KOG0951|consen 428 KSGDRAYEQLVRLLIIDEIHLLH----DDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRV----DPE 499 (1674)
T ss_pred ccCchhHHHHHHHHhhhhhhhcc----cccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhcc----Ccc
Confidence 222221 11222 3443 11111111111111100 223467899999999 77777887764 222
Q ss_pred EEEecC---eecceeEEEecCCccchHH---HHHHHH-HHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhcc--------
Q psy2470 379 ILSVKG---HLYPVSVYYSNDPVVNYVQ---GVVDTA-IKIHESMPVGDILAFVIGLEQIEHIIGILKQYHN-------- 443 (858)
Q Consensus 379 ~i~v~g---~~~~v~~~~~~~~~~~~~~---~~~~~l-~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~-------- 443 (858)
-+..-+ |.-|.++.|.....++-.. ...+.. -++......++||||+-+++|..+.|+.++....
T Consensus 500 glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~f 579 (1674)
T KOG0951|consen 500 GLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRF 579 (1674)
T ss_pred cccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHH
Confidence 222222 2235666666554433221 122222 2334445568999999999999999998872110
Q ss_pred ----------CC------------CCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCC
Q psy2470 444 ----------QR------------EDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPG 501 (858)
Q Consensus 444 ----------~~------------~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g 501 (858)
++ +.-.+.+...|+||+..+|..+.+-|.+|.++|+|+|-..|.|++.|+=+++|- |
T Consensus 580 mre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViik-g 658 (1674)
T KOG0951|consen 580 MREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIK-G 658 (1674)
T ss_pred HhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEec-C
Confidence 00 012345777899999999999999999999999999999999999999877774 2
Q ss_pred CccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC-----CceEEEeh
Q psy2470 502 FVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR-----SGHVYRKN 546 (858)
Q Consensus 502 ~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g-----~G~~~rL~ 546 (858)
...|||..|. +.++|+-+-.||.|||||.+ .|+.++=+
T Consensus 659 ---tqvy~pekg~----w~elsp~dv~qmlgragrp~~D~~gegiiit~~ 701 (1674)
T KOG0951|consen 659 ---TQVYDPEKGR----WTELSPLDVMQMLGRAGRPQYDTCGEGIIITDH 701 (1674)
T ss_pred ---ccccCcccCc----cccCCHHHHHHHHhhcCCCccCcCCceeeccCc
Confidence 2349999883 45789999999999999965 47777655
No 106
>KOG0952|consensus
Probab=99.59 E-value=5e-14 Score=165.42 Aligned_cols=325 Identities=15% Similarity=0.157 Sum_probs=192.7
Q ss_pred cchhccccCCcchhhhhhhhcCcCcccccccccCC-CCCCC-CCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeee
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQ-PEMGV-GDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYIS 280 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~-~~~g~-g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~ 280 (858)
.+-|.||||||||.++...- ++.+.+ .+.|. .+..-.++=++|++.||..++..+.+.++ ..|..
T Consensus 128 NMLIcAPTGsGKT~la~L~I---------Lr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~-~~gi~--- 194 (1230)
T KOG0952|consen 128 NMLICAPTGSGKTVLAELCI---------LRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLA-PLGIS--- 194 (1230)
T ss_pred CEEEECCCCCCchHHHHHHH---------HHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcc-cccce---
Confidence 45578999999992222111 122221 11111 11122357799999999999888877654 22333
Q ss_pred eeEEE---eccceeecceeEEEeecCccc---c-CCCccC-CCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccC
Q psy2470 281 RGYMF---RKGRMKILVSKIFKMSQGKPS---D-SGVEPI-SQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLK 347 (858)
Q Consensus 281 vG~~v---r~~~~~~~~t~I~v~TpGrLl---~-~~~~~~-L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~ 347 (858)
|+--. +........|+|+|.||...- | ..+|.. .+.+..| .+|..+-| -.+..+......+. ...
T Consensus 195 v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RG-pvlEtiVaRtlr~v-ess 272 (1230)
T KOG0952|consen 195 VRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRG-PVLETIVARTLRLV-ESS 272 (1230)
T ss_pred EEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCccc-chHHHHHHHHHHHH-Hhh
Confidence 33211 111112256999999997643 2 222222 2223222 55551111 11222222222000 122
Q ss_pred CCCceEEEEeccc-CHHHHHHHhhcccCCCCcEEEecCeeccee--EEEecCCcc-------chHHHHHHHHHHHHhhCC
Q psy2470 348 RTQLKLIISSATV-DAEEICQFYNISASSNATILSVKGHLYPVS--VYYSNDPVV-------NYVQGVVDTAIKIHESMP 417 (858)
Q Consensus 348 ~~~~q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~--~~~~~~~~~-------~~~~~~~~~l~~i~~~~~ 417 (858)
-...++|.+|||+ |.+.++.|+..++ -..++...++..||. ..+.-.... +..+...+.+.+.+..
T Consensus 273 qs~IRivgLSATlPN~eDvA~fL~vn~--~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~-- 348 (1230)
T KOG0952|consen 273 QSMIRIVGLSATLPNYEDVARFLRVNP--YAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQE-- 348 (1230)
T ss_pred hhheEEEEeeccCCCHHHHHHHhcCCC--ccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHc--
Confidence 3467899999999 9999999998421 123455555554443 332222111 1112334445555544
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCC-------CCc--c-------eEEEeccCCCCHHHHHHhcCCCCCCcEEEEEe
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQR-------EDL--K-------LLILPMHGSLPNNEQIKVFRPTPRAMRKIVIA 481 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~-------~~~--~-------~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvA 481 (858)
+.+++|||.++.+..+.|+.|.+..... ..+ + ......|+||.-++|..+.+-|+.|.++|++|
T Consensus 349 g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~c 428 (1230)
T KOG0952|consen 349 GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCC 428 (1230)
T ss_pred CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEe
Confidence 6789999999999999999987432111 111 1 23456799999999999999999999999999
Q ss_pred cCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC---CceEE--Eeh---hhHhhhh
Q psy2470 482 TNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR---SGHVY--RKN---FMYNRLF 553 (858)
Q Consensus 482 TdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g---~G~~~--rL~---~~~~~l~ 553 (858)
|...+-|+++|+=-++|= | .+.||+..|.- .-.+..+-.|--|||||.+ .|..+ +-. +.|.+|-
T Consensus 429 TaTLAwGVNLPA~aViIK-G---T~~ydsskg~f----~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl 500 (1230)
T KOG0952|consen 429 TATLAWGVNLPAYAVIIK-G---TQVYDSSKGSF----VDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLL 500 (1230)
T ss_pred cceeeeccCCcceEEEec-C---CcccccccCce----eeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHH
Confidence 999999999999666662 2 34599887621 3345677889999999964 24444 433 5566654
Q ss_pred h
Q psy2470 554 I 554 (858)
Q Consensus 554 ~ 554 (858)
.
T Consensus 501 ~ 501 (1230)
T KOG0952|consen 501 T 501 (1230)
T ss_pred c
Confidence 4
No 107
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.55 E-value=6.2e-14 Score=169.07 Aligned_cols=279 Identities=16% Similarity=0.109 Sum_probs=188.9
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-++|-.|=|||=+.+|+||..- . .| .|+.|++||-+||+|-++.+.+-+ ...... |+.-
T Consensus 619 LiCGDVGFGKTEVAmRAAFkAV------------~--~G---KQVAvLVPTTlLA~QHy~tFkeRF-~~fPV~---I~~L 677 (1139)
T COG1197 619 LICGDVGFGKTEVAMRAAFKAV------------M--DG---KQVAVLVPTTLLAQQHYETFKERF-AGFPVR---IEVL 677 (1139)
T ss_pred eeecCcCCcHHHHHHHHHHHHh------------c--CC---CeEEEEcccHHhHHHHHHHHHHHh-cCCCee---EEEe
Confidence 4689999999999999998642 1 22 378999999999999999885443 234444 5555
Q ss_pred Eeccceee----------cceeEEEeecCccccCCCccCCCcccEEEecCCCCCchhhhhHHHHHHHHhcccCCCCceEE
Q psy2470 285 FRKGRMKI----------LVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLI 354 (858)
Q Consensus 285 vr~~~~~~----------~~t~I~v~TpGrLl~~~~~~~L~~~~vlR~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~i 354 (858)
-||...+. ...+|+|+|.--| .+|..+++...+ -+| .+--.|+-.. +.|| ..+.+.-++
T Consensus 678 SRF~s~kE~~~il~~la~G~vDIvIGTHrLL---~kdv~FkdLGLl-IID----EEqRFGVk~K--EkLK-~Lr~~VDvL 746 (1139)
T COG1197 678 SRFRSAKEQKEILKGLAEGKVDIVIGTHRLL---SKDVKFKDLGLL-IID----EEQRFGVKHK--EKLK-ELRANVDVL 746 (1139)
T ss_pred cccCCHHHHHHHHHHHhcCCccEEEechHhh---CCCcEEecCCeE-EEe----chhhcCccHH--HHHH-HHhccCcEE
Confidence 56655432 4479999997544 233333333322 112 1112222110 1111 335677889
Q ss_pred EEecccCHHHHHHHhhcccCCCCcEEEec-CeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHH
Q psy2470 355 ISSATVDAEEICQFYNISASSNATILSVK-GHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEH 433 (858)
Q Consensus 355 l~SAT~~~~~~~~~~~~~~~~~~~~i~v~-g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~ 433 (858)
-||||.-...+.--+.. ..+-.+|.-| ...+||+.+..+....- ..+.+..-+. .+|++-.-.|.-++|+.
T Consensus 747 TLSATPIPRTL~Msm~G--iRdlSvI~TPP~~R~pV~T~V~~~d~~~----ireAI~REl~--RgGQvfYv~NrV~~Ie~ 818 (1139)
T COG1197 747 TLSATPIPRTLNMSLSG--IRDLSVIATPPEDRLPVKTFVSEYDDLL----IREAILRELL--RGGQVFYVHNRVESIEK 818 (1139)
T ss_pred EeeCCCCcchHHHHHhc--chhhhhccCCCCCCcceEEEEecCChHH----HHHHHHHHHh--cCCEEEEEecchhhHHH
Confidence 99999844433322210 0122344333 44588988877643211 1122222222 37898888999999999
Q ss_pred HHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEE-cCCCccceeccCCC
Q psy2470 434 IIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVI-DPGFVKARWFNPNT 512 (858)
Q Consensus 434 l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VI-d~g~~k~~~yd~~~ 512 (858)
+++.|++. .|..++...||.|+..+-+++|..|-+|+..|||||-|.|+|||||+++..| + . =| .-
T Consensus 819 ~~~~L~~L-----VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe-~------AD-~f 885 (1139)
T COG1197 819 KAERLREL-----VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIE-R------AD-KF 885 (1139)
T ss_pred HHHHHHHh-----CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEe-c------cc-cc
Confidence 99999988 5789999999999999999999999999999999999999999999998777 2 0 11 22
Q ss_pred CCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 513 LTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 513 g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+ ++.-|-.||.||... |.||-+|
T Consensus 886 GL----------sQLyQLRGRVGRS~~~AYAYfl~ 910 (1139)
T COG1197 886 GL----------AQLYQLRGRVGRSNKQAYAYFLY 910 (1139)
T ss_pred cH----------HHHHHhccccCCccceEEEEEee
Confidence 43 445589999999887 9999998
No 108
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.54 E-value=3.1e-14 Score=169.56 Aligned_cols=110 Identities=17% Similarity=0.253 Sum_probs=99.5
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeE
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVY 496 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~ 496 (858)
.+.++|||++|++.++.+++.|.+. |+.+..+||++++.+|.++++.|++|+..|+||||++++|+|+|++++
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~-------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~l 513 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL-------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSL 513 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh-------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcE
Confidence 3578999999999999999999987 889999999999999999999999999999999999999999999999
Q ss_pred EEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 497 VIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 497 VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
||+ +|+..- -.|.+..+|+||+|||||...|.|+.++
T Consensus 514 Vvi--------~Dadif-----G~p~~~~~~iqriGRagR~~~G~vi~~~ 550 (655)
T TIGR00631 514 VAI--------LDADKE-----GFLRSERSLIQTIGRAARNVNGKVIMYA 550 (655)
T ss_pred EEE--------eCcccc-----cCCCCHHHHHHHhcCCCCCCCCEEEEEE
Confidence 999 553221 1577889999999999999889998877
No 109
>KOG0351|consensus
Probab=99.52 E-value=6.4e-14 Score=169.86 Aligned_cols=292 Identities=17% Similarity=0.148 Sum_probs=180.4
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
.++-+||.||+ +.||+|+++.. . .++|++|..-|..-....+ ...++..... ..+-.
T Consensus 283 fvlmpTG~GKS-----LCYQlPA~l~~------------g---itvVISPL~SLm~DQv~~L-~~~~I~a~~L--~s~q~ 339 (941)
T KOG0351|consen 283 FVLMPTGGGKS-----LCYQLPALLLG------------G---VTVVISPLISLMQDQVTHL-SKKGIPACFL--SSIQT 339 (941)
T ss_pred EEEeecCCcee-----eEeeccccccC------------C---ceEEeccHHHHHHHHHHhh-hhcCcceeec--ccccc
Confidence 45789999999 88899987721 1 4699999988864333333 2233332222 11111
Q ss_pred Ee-----ccceeec--ceeEEEeecCcccc-C-CCc--cCCCc-----ccEE---EecCCCCCchhhhhHHHHHHHHhcc
Q psy2470 285 FR-----KGRMKIL--VSKIFKMSQGKPSD-S-GVE--PISQS-----YLVE---LSILAPGGQDVIGEDMKAFAEQLKP 345 (858)
Q Consensus 285 vr-----~~~~~~~--~t~I~v~TpGrLl~-~-~~~--~~L~~-----~~vl---R~l~~~~~~d~ll~~lk~~~~~l~~ 345 (858)
.. ......+ ..+|+|.||-.+.. . ... ..|.. .-|| ..+. -=|-||-....+.- .++
T Consensus 340 ~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS-qWgHdFRp~Yk~l~--~l~- 415 (941)
T KOG0351|consen 340 AAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS-QWGHDFRPSYKRLG--LLR- 415 (941)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh-hhcccccHHHHHHH--HHH-
Confidence 10 0001112 57999999988876 1 111 12222 1122 0000 00022222221111 111
Q ss_pred cCCCCceEEEEecccCH---HHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEE
Q psy2470 346 LKRTQLKLIISSATVDA---EEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDIL 422 (858)
Q Consensus 346 ~~~~~~q~il~SAT~~~---~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iL 422 (858)
...+..=+|.++||... +.+.+-++- .++.++.- .- .+-..+|...+..+ .......+..+-..++.+.+|
T Consensus 416 ~~~~~vP~iALTATAT~~v~~DIi~~L~l---~~~~~~~~-sf-nR~NL~yeV~~k~~-~~~~~~~~~~~~~~~~~~s~I 489 (941)
T KOG0351|consen 416 IRFPGVPFIALTATATERVREDVIRSLGL---RNPELFKS-SF-NRPNLKYEVSPKTD-KDALLDILEESKLRHPDQSGI 489 (941)
T ss_pred hhCCCCCeEEeehhccHHHHHHHHHHhCC---CCcceecc-cC-CCCCceEEEEeccC-ccchHHHHHHhhhcCCCCCeE
Confidence 11233567889999843 334444442 13443221 11 11112222111111 122333344444556678899
Q ss_pred EEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCC
Q psy2470 423 AFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGF 502 (858)
Q Consensus 423 VFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~ 502 (858)
|+|.++.+|+.++..|++. ++.+..+|+||+..+|..|-+.|-.++.+|||||=--..|||-|||++||.++
T Consensus 490 IYC~sr~~ce~vs~~L~~~-------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~- 561 (941)
T KOG0351|consen 490 IYCLSRKECEQVSAVLRSL-------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYS- 561 (941)
T ss_pred EEeCCcchHHHHHHHHHHh-------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECC-
Confidence 9999999999999999988 88999999999999999999999999999999998889999999999999955
Q ss_pred ccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh--hhHhhhhh
Q psy2470 503 VKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN--FMYNRLFI 554 (858)
Q Consensus 503 ~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~--~~~~~l~~ 554 (858)
.|-|-+.|-|=+|||||-|. ..|..+| .++..+..
T Consensus 562 -----------------lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ 599 (941)
T KOG0351|consen 562 -----------------LPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRR 599 (941)
T ss_pred -----------------CchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHH
Confidence 56777889999999999997 9999999 66655433
No 110
>KOG0352|consensus
Probab=99.52 E-value=2.7e-14 Score=153.04 Aligned_cols=104 Identities=19% Similarity=0.216 Sum_probs=96.7
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYV 497 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~V 497 (858)
.|--||+|.|+++||.++-.|... |+.+..+|+||...||..|-+..-+|+..||+||+--..|+|-|+|++|
T Consensus 255 ~GCGIVYCRTR~~cEq~AI~l~~~-------Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFV 327 (641)
T KOG0352|consen 255 TGCGIVYCRTRNECEQVAIMLEIA-------GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFV 327 (641)
T ss_pred CcceEEEeccHHHHHHHHHHhhhc-------CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEE
Confidence 377899999999999999999877 9999999999999999999999999999999999999999999999999
Q ss_pred EcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 498 IDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 498 Id~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|. || .|-+.+.|-|-.|||||-|.-..-|||
T Consensus 328 iH--------W~----------~~qn~AgYYQESGRAGRDGk~SyCRLY 358 (641)
T KOG0352|consen 328 IH--------WS----------PSQNLAGYYQESGRAGRDGKRSYCRLY 358 (641)
T ss_pred Ee--------cC----------chhhhHHHHHhccccccCCCccceeee
Confidence 99 88 677889999999999999986555777
No 111
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.50 E-value=3e-13 Score=163.15 Aligned_cols=319 Identities=18% Similarity=0.111 Sum_probs=203.6
Q ss_pred hhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHH
Q psy2470 185 QPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVV 264 (858)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~ 264 (858)
+++.++++-.+...+ .+-+.|+|||||| +..-|.+-..+ ...+ .++=++|+..|..|...
T Consensus 121 D~fQ~~a~~~Ler~e---sVlV~ApTssGKT---vVaeyAi~~al------------~~~q--rviYTsPIKALsNQKyr 180 (1041)
T COG4581 121 DPFQQEAIAILERGE---SVLVCAPTSSGKT---VVAEYAIALAL------------RDGQ--RVIYTSPIKALSNQKYR 180 (1041)
T ss_pred CHHHHHHHHHHhCCC---cEEEEccCCCCcc---hHHHHHHHHHH------------HcCC--ceEeccchhhhhhhHHH
Confidence 455555555555544 3345699999999 11111111000 1112 26889999999999999
Q ss_pred HHHHHhCCcCccEeeeeeEEEeccceeecceeEEEeecCcccc-C-CCccCCCcccEE-----EecCCCCCchhhhhHHH
Q psy2470 265 EFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-S-GVEPISQSYLVE-----LSILAPGGQDVIGEDMK 337 (858)
Q Consensus 265 ~v~~e~g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~-~-~~~~~L~~~~vl-----R~l~~~~~~d~ll~~lk 337 (858)
.+....|.- ... +|... ++-...+.+.++|||.-+|-. + .+...+..+..| .-+. |-.-|...
T Consensus 181 dl~~~fgdv-~~~---vGL~T-GDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~-----D~eRG~VW 250 (1041)
T COG4581 181 DLLAKFGDV-ADM---VGLMT-GDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIG-----DRERGVVW 250 (1041)
T ss_pred HHHHHhhhh-hhh---cccee-cceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeecc-----ccccchhH
Confidence 988887743 222 34322 233444568899999976655 3 344556666555 1111 12244443
Q ss_pred HHHHHhcccCCCCceEEEEeccc-CHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCC-c---cch----HHH----
Q psy2470 338 AFAEQLKPLKRTQLKLIISSATV-DAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDP-V---VNY----VQG---- 404 (858)
Q Consensus 338 ~~~~~l~~~~~~~~q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~-~---~~~----~~~---- 404 (858)
+-. ++ ..+...|+|++|||+ |.++|+.|+......+..++..+-|.-|.++++.... . .|. ...
T Consensus 251 EE~-Ii--~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~ 327 (1041)
T COG4581 251 EEV-II--LLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPS 327 (1041)
T ss_pred HHH-HH--hcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchh
Confidence 322 12 557788999999999 9999999998544334556666667667776655431 0 000 000
Q ss_pred HHHH--------------------------------------HHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhcc---
Q psy2470 405 VVDT--------------------------------------AIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHN--- 443 (858)
Q Consensus 405 ~~~~--------------------------------------l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~--- 443 (858)
+... +...+.....-++++|+=++.+|+..+..+.....
T Consensus 328 a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~ 407 (1041)
T COG4581 328 ANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLT 407 (1041)
T ss_pred hhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccC
Confidence 0000 11112222345799999999999999988862110
Q ss_pred -----------------CC-CCcceE-------------EEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCC
Q psy2470 444 -----------------QR-EDLKLL-------------ILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIP 492 (858)
Q Consensus 444 -----------------~~-~~~~~~-------------v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp 492 (858)
+. +..++. +...|++|=+..+..+..-|..|-+||++||.+.+-|++.|
T Consensus 408 ~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP 487 (1041)
T COG4581 408 EEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP 487 (1041)
T ss_pred CcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc
Confidence 00 011111 33679999999999999999999999999999999999999
Q ss_pred CeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh
Q psy2470 493 GIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN 546 (858)
Q Consensus 493 ~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~ 546 (858)
.-++|+- ++.| ||... ..|.+..+|.|.+|||||.|- |.++...
T Consensus 488 artvv~~-~l~K---~dG~~------~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~ 534 (1041)
T COG4581 488 ARTVVFT-SLSK---FDGNG------HRWLSPGEYTQMSGRAGRRGLDVLGTVIVIE 534 (1041)
T ss_pred ccceeee-eeEE---ecCCc------eeecChhHHHHhhhhhccccccccceEEEec
Confidence 8877774 3322 55222 279999999999999999985 9999885
No 112
>KOG0947|consensus
Probab=99.47 E-value=1.5e-13 Score=159.65 Aligned_cols=313 Identities=17% Similarity=0.167 Sum_probs=196.1
Q ss_pred CCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCc
Q psy2470 167 PETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKA 246 (858)
Q Consensus 167 ~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~ 246 (858)
+.+||...+....+++..- +.|.|-+|||++. ..|..+- + +..
T Consensus 298 lD~FQk~Ai~~lerg~SVF--------------------VAAHTSAGKTvVA-EYAiala----------q------~h~ 340 (1248)
T KOG0947|consen 298 LDTFQKEAIYHLERGDSVF--------------------VAAHTSAGKTVVA-EYAIALA----------Q------KHM 340 (1248)
T ss_pred ccHHHHHHHHHHHcCCeEE--------------------EEecCCCCcchHH-HHHHHHH----------H------hhc
Confidence 5666666666666664332 2499999999221 1222111 1 111
Q ss_pred cCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccceeecceeEEEeecCcccc-C-CCccCCCcccEE----
Q psy2470 247 RPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-S-GVEPISQSYLVE---- 320 (858)
Q Consensus 247 ~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~-~-~~~~~L~~~~vl---- 320 (858)
.+++-.+|...|--|=...+.+.+| . || .+.++.+..+...+++||.-+|-. + .+...+.++..|
T Consensus 341 TR~iYTSPIKALSNQKfRDFk~tF~-D-------vg-LlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDE 411 (1248)
T KOG0947|consen 341 TRTIYTSPIKALSNQKFRDFKETFG-D-------VG-LLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDE 411 (1248)
T ss_pred cceEecchhhhhccchHHHHHHhcc-c-------cc-eeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEee
Confidence 2468899999998888777755554 2 34 344555666778999999998876 2 333344444444
Q ss_pred -EecCCCCCchhhhhHH--HHHHHHhcccCCCCceEEEEeccc-CHHHHHHHhhcccCCCCcEEEecCeecceeEEEecC
Q psy2470 321 -LSILAPGGQDVIGEDM--KAFAEQLKPLKRTQLKLIISSATV-DAEEICQFYNISASSNATILSVKGHLYPVSVYYSND 396 (858)
Q Consensus 321 -R~l~~~~~~d~ll~~l--k~~~~~l~~~~~~~~q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~ 396 (858)
.=++ |.--|.. ..+. .+|+..++|++|||. |..+|++|.+.....+--|+.-..|..|.+++....
T Consensus 412 VHYiN-----D~eRGvVWEEViI-----MlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~ 481 (1248)
T KOG0947|consen 412 VHYIN-----DVERGVVWEEVII-----MLPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTK 481 (1248)
T ss_pred eeecc-----cccccccceeeee-----eccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEec
Confidence 1111 1112211 1112 457899999999999 999999999854322222333334444555442211
Q ss_pred C--c-----------c--------------------------------------------------chHH--HHHHHHHH
Q psy2470 397 P--V-----------V--------------------------------------------------NYVQ--GVVDTAIK 411 (858)
Q Consensus 397 ~--~-----------~--------------------------------------------------~~~~--~~~~~l~~ 411 (858)
. . . +... ...+++.+
T Consensus 482 ~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~ 561 (1248)
T KOG0947|consen 482 KSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINH 561 (1248)
T ss_pred cceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHH
Confidence 0 0 0 0000 11223333
Q ss_pred HHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCC-----------------------Ccc---------eEEEeccCCC
Q psy2470 412 IHESMPVGDILAFVIGLEQIEHIIGILKQYHNQRE-----------------------DLK---------LLILPMHGSL 459 (858)
Q Consensus 412 i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~-----------------------~~~---------~~v~~LHg~l 459 (858)
+. ...-=+++||+=++..|+..++.|....-... .|. --+...|||+
T Consensus 562 L~-k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~Gl 640 (1248)
T KOG0947|consen 562 LR-KKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGL 640 (1248)
T ss_pred Hh-hcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccc
Confidence 32 22345799999999999999999964311100 010 1255679999
Q ss_pred CHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC
Q psy2470 460 PNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS 539 (858)
Q Consensus 460 ~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~ 539 (858)
-+--..-|.--|..|-+|||+||...|.|++.|.-++|+++= .| .|-+.. .-..+.+|.|++|||||-|-
T Consensus 641 LPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl-~K---hDG~ef------R~L~PGEytQMAGRAGRRGl 710 (1248)
T KOG0947|consen 641 LPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSL-RK---HDGNEF------RELLPGEYTQMAGRAGRRGL 710 (1248)
T ss_pred hHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeeh-hh---ccCcce------eecCChhHHhhhcccccccc
Confidence 998888888889999999999999999999999999999842 22 342222 45778999999999999984
Q ss_pred ---ceEEEeh
Q psy2470 540 ---GHVYRKN 546 (858)
Q Consensus 540 ---G~~~rL~ 546 (858)
|.++-+.
T Consensus 711 D~tGTVii~~ 720 (1248)
T KOG0947|consen 711 DETGTVIIMC 720 (1248)
T ss_pred CcCceEEEEe
Confidence 9988877
No 113
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.47 E-value=1.6e-13 Score=164.70 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=98.8
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYV 497 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~V 497 (858)
..++|||++|++.++.+++.|... |+.+..+||++++.+|..+++.|++|...|+|||+++++|+|+|++++|
T Consensus 446 g~~viIf~~t~~~ae~L~~~L~~~-------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lV 518 (652)
T PRK05298 446 GERVLVTTLTKRMAEDLTDYLKEL-------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLV 518 (652)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhhc-------ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEE
Confidence 568999999999999999999977 8999999999999999999999999999999999999999999999999
Q ss_pred EcCCCccceeccCCC-CCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 498 IDPGFVKARWFNPNT-LTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 498 Id~g~~k~~~yd~~~-g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|+ ||... | .|.+.++|+||+|||||...|.|+.+.
T Consensus 519 ii--------~d~eifG------~~~~~~~yiqr~GR~gR~~~G~~i~~~ 554 (652)
T PRK05298 519 AI--------LDADKEG------FLRSERSLIQTIGRAARNVNGKVILYA 554 (652)
T ss_pred EE--------eCCcccc------cCCCHHHHHHHhccccCCCCCEEEEEe
Confidence 99 44321 2 567889999999999998789999887
No 114
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.46 E-value=1.2e-13 Score=168.94 Aligned_cols=118 Identities=13% Similarity=0.122 Sum_probs=102.4
Q ss_pred HHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCC--CcEEEEEec
Q psy2470 405 VVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPR--AMRKIVIAT 482 (858)
Q Consensus 405 ~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~--g~~kVlvAT 482 (858)
+++.+.+++......++|||+++++.++.+++.|+.. .|+.+..+||+|++.+|.++++.|++ |..+|+|||
T Consensus 480 Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsT 553 (956)
T PRK04914 480 RVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER------EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCS 553 (956)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc------cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEec
Confidence 4455667776666789999999999999999999633 18999999999999999999999987 469999999
Q ss_pred CcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-c--eEEEeh
Q psy2470 483 NIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-G--HVYRKN 546 (858)
Q Consensus 483 dvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G--~~~rL~ 546 (858)
+++++|+|++.+++||| || .|-+++.|+||+||+||.|. | .+|.++
T Consensus 554 dvgseGlNlq~a~~VIn--------fD----------lP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~ 602 (956)
T PRK04914 554 EIGSEGRNFQFASHLVL--------FD----------LPFNPDLLEQRIGRLDRIGQKHDIQIHVPY 602 (956)
T ss_pred hhhccCCCcccccEEEE--------ec----------CCCCHHHHHHHhcccccCCCCceEEEEEcc
Confidence 99999999999999999 88 78999999999999999987 3 344555
No 115
>KOG0948|consensus
Probab=99.46 E-value=6.6e-14 Score=158.90 Aligned_cols=295 Identities=16% Similarity=0.112 Sum_probs=190.9
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
+-+.|.|-+||| +.+-+.+-+.+ + .+.+++-.+|...|.-|=+..+..|++ .+|.-
T Consensus 147 VLVSAHTSAGKT---VVAeYAIA~sL---r-----------~kQRVIYTSPIKALSNQKYREl~~EF~-DVGLM------ 202 (1041)
T KOG0948|consen 147 VLVSAHTSAGKT---VVAEYAIAMSL---R-----------EKQRVIYTSPIKALSNQKYRELLEEFK-DVGLM------ 202 (1041)
T ss_pred EEEEeecCCCcc---hHHHHHHHHHH---H-----------hcCeEEeeChhhhhcchhHHHHHHHhc-cccee------
Confidence 445699999999 33334433322 1 122478899999999999998888876 34443
Q ss_pred EEeccceeecceeEEEeecCcccc--CCCccCCCcccEE--------EecCCCCCchhhhhHHHHHHHHhcccCCCCceE
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD--SGVEPISQSYLVE--------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKL 353 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~--~~~~~~L~~~~vl--------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~ 353 (858)
. ++-...+.+..+|||..+|-. ..+.-.+..+..| |.=+ -+..+. ..+. ..+++.+.
T Consensus 203 -T-GDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkE----RGVVWE--ETII-----llP~~vr~ 269 (1041)
T KOG0948|consen 203 -T-GDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKE----RGVVWE--ETII-----LLPDNVRF 269 (1041)
T ss_pred -e-cceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccc----cceeee--eeEE-----eccccceE
Confidence 2 122334567889999998866 2344444544444 2222 111111 1111 45788899
Q ss_pred EEEeccc-CHHHHHHHhhcccCCCCcEEEecCeecceeEEEecC---------Ccc-----chHH---------------
Q psy2470 354 IISSATV-DAEEICQFYNISASSNATILSVKGHLYPVSVYYSND---------PVV-----NYVQ--------------- 403 (858)
Q Consensus 354 il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~---------~~~-----~~~~--------------- 403 (858)
+++|||+ |+..|++|...-....+.++.-+-|.-|..+|.-+. ..+ +...
T Consensus 270 VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~ 349 (1041)
T KOG0948|consen 270 VFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGK 349 (1041)
T ss_pred EEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccc
Confidence 9999999 999999998643222355555555555555441110 000 0000
Q ss_pred --------------------HHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCC-----------------
Q psy2470 404 --------------------GVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQRE----------------- 446 (858)
Q Consensus 404 --------------------~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~----------------- 446 (858)
...+.+..+.. ....++|||.=++++||..|-.+.+..-..+
T Consensus 350 ~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~-~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~L 428 (1041)
T KOG0948|consen 350 KKANKKGRKGGTGGKGPGDSDIYKIVKMIME-RNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQL 428 (1041)
T ss_pred cccccccccCCcCCCCCCcccHHHHHHHHHh-hcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhc
Confidence 11222222222 2356899999999999999988864311100
Q ss_pred ---Ccce------------EEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCC
Q psy2470 447 ---DLKL------------LILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPN 511 (858)
Q Consensus 447 ---~~~~------------~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~ 511 (858)
+.++ -+...||||-+--.+-+.=-|.+|-+|||+||..-+-||+.|.-++|.- ..+.||-.
T Consensus 429 seeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT----~~rKfDG~ 504 (1041)
T KOG0948|consen 429 SEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT----AVRKFDGK 504 (1041)
T ss_pred ChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe----eccccCCc
Confidence 1111 2556799999887776666689999999999999999999999888874 12347744
Q ss_pred CCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh
Q psy2470 512 TLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN 546 (858)
Q Consensus 512 ~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~ 546 (858)
.- .|+|.-+|+|++|||||-|- |+|+.+.
T Consensus 505 ~f------RwissGEYIQMSGRAGRRG~DdrGivIlmi 536 (1041)
T KOG0948|consen 505 KF------RWISSGEYIQMSGRAGRRGIDDRGIVILMI 536 (1041)
T ss_pred ce------eeecccceEEecccccccCCCCCceEEEEe
Confidence 33 89999999999999999995 9999988
No 116
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.46 E-value=5.1e-13 Score=140.53 Aligned_cols=345 Identities=17% Similarity=0.149 Sum_probs=188.4
Q ss_pred hhhhcCCCCchhhhHHhhcccccchHHHHHHHhhhhhcccccCCCCcccccccchhccCCCC---hhHHHHHHHhcCCCC
Q psy2470 123 ETMAEMPLHPIHAKVLLSSGSVLDSAVEILLHRLRGLCDNVDSGPETFHDHEMCFSIRGNQT---QPLLLRVRRALDFPD 199 (858)
Q Consensus 123 ~~ma~lp~~p~~~~~l~~s~s~~~~~~~~~~~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~---~~~~~~~~~~~~~~~ 199 (858)
+.-+.+|....+.+.+|.-|-+-+ +++++ .-+|..|..+. +..-++... ..+.+-+..+++...
T Consensus 51 ~~~~~lp~~~~YCr~Cl~mgRv~s---d~~Ly---------~~~~~~fp~~s-~L~W~G~Ls~~Q~~as~~l~q~i~~k~ 117 (441)
T COG4098 51 ELFAKLPCGCLYCRNCLMMGRVRS---DQKLY---------YWKPYAFPKKS-VLQWKGTLSPGQKKASNQLVQYIKQKE 117 (441)
T ss_pred hhhcccccceEeehhhhhcccccc---cceee---------ecCCcCCCccc-eeeeccccChhHHHHHHHHHHHHHhcC
Confidence 345567777667766665554432 11111 11244454444 333333221 122233334443222
Q ss_pred ccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhC-CcCccEe
Q psy2470 200 MPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMG-CRMDFEY 278 (858)
Q Consensus 200 ~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g-~~~g~~~ 278 (858)
..-+-|-||+||| .+.|+ -+.++-. .| -.+.+-+|+---+..++.|+.+.+. +.+...
T Consensus 118 ---~~lv~AV~GaGKT-----------EMif~--~i~~al~-~G---~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L- 176 (441)
T COG4098 118 ---DTLVWAVTGAGKT-----------EMIFQ--GIEQALN-QG---GRVCIASPRVDVCLELYPRLKQAFSNCDIDLL- 176 (441)
T ss_pred ---cEEEEEecCCCch-----------hhhHH--HHHHHHh-cC---CeEEEecCcccchHHHHHHHHHhhccCCeeeE-
Confidence 2334577899999 44433 1111110 11 2467788887778888999877654 554433
Q ss_pred eeeeEEEeccceeecceeEEEeecCccccCCCccCCCcccEEEecCCCCC-chhhhhHHHHHHHHhcccCCCCceEEEEe
Q psy2470 279 ISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGG-QDVIGEDMKAFAEQLKPLKRTQLKLIISS 357 (858)
Q Consensus 279 ~~vG~~vr~~~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vlR~l~~~~~-~d~ll~~lk~~~~~l~~~~~~~~q~il~S 357 (858)
|+ ++...-.+.++|||.--|++..... ++.+|--+||=|. +|-.+...- +...+++--+|.+|
T Consensus 177 ----yg---~S~~~fr~plvVaTtHQLlrFk~aF---D~liIDEVDAFP~~~d~~L~~Av------~~ark~~g~~IylT 240 (441)
T COG4098 177 ----YG---DSDSYFRAPLVVATTHQLLRFKQAF---DLLIIDEVDAFPFSDDQSLQYAV------KKARKKEGATIYLT 240 (441)
T ss_pred ----ec---CCchhccccEEEEehHHHHHHHhhc---cEEEEeccccccccCCHHHHHHH------HHhhcccCceEEEe
Confidence 11 1111123789999999998822211 1112233332111 222222211 11234566789999
Q ss_pred cccCHHHHHHHhhcccCCCCcEEEecCeec----ceeEEEecCCccchHHH--HHHHHHHHHhhC--CCCCEEEEcCCHH
Q psy2470 358 ATVDAEEICQFYNISASSNATILSVKGHLY----PVSVYYSNDPVVNYVQG--VVDTAIKIHESM--PVGDILAFVIGLE 429 (858)
Q Consensus 358 AT~~~~~~~~~~~~~~~~~~~~i~v~g~~~----~v~~~~~~~~~~~~~~~--~~~~l~~i~~~~--~~g~iLVFl~t~~ 429 (858)
||.. +++.+..... +-..+.++.|.| |+.-+........++.. .-..+...++.+ ...++|||+|+.+
T Consensus 241 ATp~-k~l~r~~~~g---~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~ 316 (441)
T COG4098 241 ATPT-KKLERKILKG---NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIE 316 (441)
T ss_pred cCCh-HHHHHHhhhC---CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchH
Confidence 9964 4444443311 233355555432 33322222111111111 011222232221 2468999999999
Q ss_pred HHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEE-cCCCccceec
Q psy2470 430 QIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVI-DPGFVKARWF 508 (858)
Q Consensus 430 ~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VI-d~g~~k~~~y 508 (858)
..+.+++.|++.. +...+...||. ...|.+-.+.|++|+.++|++|.|+|||+|+|+|+++| ++
T Consensus 317 ~~eq~a~~lk~~~-----~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlga-------- 381 (441)
T COG4098 317 TMEQVAAALKKKL-----PKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGA-------- 381 (441)
T ss_pred HHHHHHHHHHhhC-----Cccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecC--------
Confidence 9999999997441 35566777865 34566777889999999999999999999999999766 52
Q ss_pred cCCCCCCcceeeecCHhhHHHhhcccCCCC--C-ceEEEe
Q psy2470 509 NPNTLTNSLVVVPISKASAVQRAGRAGRVR--S-GHVYRK 545 (858)
Q Consensus 509 d~~~g~~~l~~~pis~~~~~qR~GRaGR~g--~-G~~~rL 545 (858)
+++ --+.+..+|-+||+||.- + |..+-+
T Consensus 382 eh~---------vfTesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 382 EHR---------VFTESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred Ccc---------cccHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 222 136788999999999963 2 665443
No 117
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.46 E-value=3.1e-13 Score=128.31 Aligned_cols=103 Identities=24% Similarity=0.461 Sum_probs=93.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeE
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVY 496 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~ 496 (858)
+.+++|||+++...++.+++.|.+. +..+..+||+++..+|..+++.|.+|..+|+++|+.+++|+|+|++++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~ 99 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP-------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSV 99 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc-------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCE
Confidence 4689999999999999999999874 778999999999999999999999999999999999999999999999
Q ss_pred EEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEE
Q psy2470 497 VIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYR 544 (858)
Q Consensus 497 VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~r 544 (858)
||- ++ .|.+..++.|++||+||.|. |.|+.
T Consensus 100 vi~--------~~----------~~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 100 VIN--------YD----------LPWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred EEE--------eC----------CCCCHHHheecccccccCCCCceEEe
Confidence 997 44 36788899999999999995 88774
No 118
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.44 E-value=3.5e-13 Score=160.90 Aligned_cols=157 Identities=18% Similarity=0.215 Sum_probs=116.8
Q ss_pred eEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCeeccee------EEEecCCccchHHHHHHHHHHHHhhCCCCCEEE
Q psy2470 352 KLIISSATV--DAEEICQFYNISASSNATILSVKGHLYPVS------VYYSNDPVVNYVQGVVDTAIKIHESMPVGDILA 423 (858)
Q Consensus 352 q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~------~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLV 423 (858)
++-.|+.|. ...+|.+.++ -.++.||... |+. .+|.. ..++..+.++.+...+. .+.+|||
T Consensus 535 kLaGMTGTA~te~~Ef~~iY~------L~Vv~IPTnr-P~~R~D~~d~vy~t--~~eK~~Ali~~I~~~~~--~grpVLI 603 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIYK------LDVVVIPTNK-PIVRKDMDDLVYKT--RREKYNAIVLKVEELQK--KGQPVLV 603 (1025)
T ss_pred hhcccCCCChhHHHHHHHHhC------CcEEECCCCC-CcceecCCCeEecC--HHHHHHHHHHHHHHHhh--CCCCEEE
Confidence 566788888 4556766665 5677776432 322 22221 11222333333333332 3678999
Q ss_pred EcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCC---CeeEE---
Q psy2470 424 FVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIP---GIVYV--- 497 (858)
Q Consensus 424 Fl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp---~V~~V--- 497 (858)
|++|.+.++.+++.|.+. ++....||+ .|.+|...+..|+.+.-.|+||||+|+||+||+ +|..|
T Consensus 604 ft~Sve~sE~Ls~~L~~~-------gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL 674 (1025)
T PRK12900 604 GTASVEVSETLSRMLRAK-------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGL 674 (1025)
T ss_pred EeCcHHHHHHHHHHHHHc-------CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCc
Confidence 999999999999999987 888899997 688999999999999999999999999999999 56443
Q ss_pred --EcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 498 --IDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 498 --Id~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+ ++ .|-|...|.||.|||||.|. |.+..+.
T Consensus 675 ~VIg--------te----------rhes~Rid~Ql~GRtGRqGdpGsS~ffv 708 (1025)
T PRK12900 675 FILG--------SE----------RHESRRIDRQLRGRAGRQGDPGESVFYV 708 (1025)
T ss_pred eeeC--------CC----------CCchHHHHHHHhhhhhcCCCCcceEEEe
Confidence 66 33 56788889999999999997 9998877
No 119
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.43 E-value=6.7e-14 Score=121.29 Aligned_cols=72 Identities=28% Similarity=0.490 Sum_probs=68.5
Q ss_pred ceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHH
Q psy2470 449 KLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAV 528 (858)
Q Consensus 449 ~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~ 528 (858)
++.+..+||++++++|..+++.|.+|..+||+||+++++|+|+|++++||. |+ .|-+..+|.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~--------~~----------~~~~~~~~~ 68 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF--------YD----------PPWSPEEYI 68 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE--------SS----------SESSHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc--------cc----------cCCCHHHHH
Confidence 889999999999999999999999999999999999999999999999999 55 478899999
Q ss_pred HhhcccCCCC
Q psy2470 529 QRAGRAGRVR 538 (858)
Q Consensus 529 qR~GRaGR~g 538 (858)
||+||+||.|
T Consensus 69 Q~~GR~~R~g 78 (78)
T PF00271_consen 69 QRIGRAGRIG 78 (78)
T ss_dssp HHHTTSSTTT
T ss_pred HHhhcCCCCC
Confidence 9999999976
No 120
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.38 E-value=1.3e-11 Score=142.12 Aligned_cols=94 Identities=18% Similarity=0.239 Sum_probs=83.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYV 497 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~V 497 (858)
..+++||+...+.++.++..+... +. +..+.|..++.+|..+++.|+.|..++||++.|+.-|+|+|+++.+
T Consensus 283 ~~~~lif~~~~~~a~~i~~~~~~~-------~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~ 354 (442)
T COG1061 283 GDKTLIFASDVEHAYEIAKLFLAP-------GI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVL 354 (442)
T ss_pred CCcEEEEeccHHHHHHHHHHhcCC-------Cc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEE
Confidence 568999999999999999988754 55 8889999999999999999999999999999999999999999999
Q ss_pred EcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCC
Q psy2470 498 IDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRV 537 (858)
Q Consensus 498 Id~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~ 537 (858)
|=.. ..-|+..|.||+||.=|.
T Consensus 355 i~~~------------------~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 355 IILR------------------PTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred EEeC------------------CCCcHHHHHHHhhhhccC
Confidence 9621 125788899999999994
No 121
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.37 E-value=9.4e-12 Score=155.71 Aligned_cols=110 Identities=20% Similarity=0.283 Sum_probs=86.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccC--CCCcceEEEeccCCCCHHHHHHhcCCCCCCcE-EEEEecCcccccCCCCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQ--REDLKLLILPMHGSLPNNEQIKVFRPTPRAMR-KIVIATNIAETSITIPG 493 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~--~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~-kVlvATdvAergldIp~ 493 (858)
.+++.||||.+.+.++.+++.|++.... .+..+..+..+||+.+. +.++++.|+++.. +|+|++|++.+|+|+|.
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~--~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDK--PDQLIRRFKNERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccc--hHHHHHHHhCCCCCeEEEEecccccCCCccc
Confidence 4589999999999999999998853210 11123356678998864 5678999999876 79999999999999999
Q ss_pred eeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC--ceE-EEeh
Q psy2470 494 IVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS--GHV-YRKN 546 (858)
Q Consensus 494 V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~--G~~-~rL~ 546 (858)
|.+||. +. .+-|+..|.||+||+.|..+ |+- +.++
T Consensus 775 v~~vVf--------~r----------pvkS~~lf~QmIGRgtR~~~~~~K~~f~I~ 812 (1123)
T PRK11448 775 ICNLVF--------LR----------RVRSRILYEQMLGRATRLCPEIGKTHFRIF 812 (1123)
T ss_pred ccEEEE--------ec----------CCCCHHHHHHHHhhhccCCccCCCceEEEE
Confidence 999998 44 45688899999999999876 453 3444
No 122
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.36 E-value=7.2e-13 Score=123.80 Aligned_cols=73 Identities=25% Similarity=0.484 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCCCCCCC-------------CCChHHHHHHHHhcccccchhhccCCcEEeecCCceEEEcCCCCCCCCCC
Q psy2470 784 NQMILLLKKSSIPLVTS-------------PRNTNAVLKCLTNGFFSNAAYLHYSGVYRTVRGNEDLYIHPSSVLYTLQQ 850 (858)
Q Consensus 784 ~QL~~~l~~~~~~~~~~-------------~~~~~~i~k~l~aG~~~nvA~~~~~~~Y~t~~~~~~v~iHPsS~L~~~~~ 850 (858)
+||.++|+++|+...+. ..+...|++|||+|||+|+|++++++.|+++.++..++|||+|+|++ ++
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~~-~~ 79 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLFK-KP 79 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTTT-TT
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCCCCEEEecCCCEEEEecCccccc-cc
Confidence 59999999998743321 13467899999999999999999889999998888999999999976 57
Q ss_pred CCeEEec
Q psy2470 851 PQCTHLE 857 (858)
Q Consensus 851 P~wvvy~ 857 (858)
|+||||+
T Consensus 80 p~~vvy~ 86 (114)
T PF07717_consen 80 PKWVVYH 86 (114)
T ss_dssp -SEEEEE
T ss_pred cccchhh
Confidence 8999997
No 123
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.30 E-value=2.1e-11 Score=145.66 Aligned_cols=115 Identities=22% Similarity=0.182 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEec
Q psy2470 403 QGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIAT 482 (858)
Q Consensus 403 ~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvAT 482 (858)
.+.++.+...|.. +.+|||-+.+.+.-+.++..|.+. ++....|++.-...|-.-|-++-+. -.|.|||
T Consensus 555 ~ai~~ei~~~~~~--grPvLigt~si~~se~ls~~L~~~-------gi~h~vLNak~~~~Ea~iia~AG~~--g~VTIAT 623 (970)
T PRK12899 555 HAIVAEIASIHRK--GNPILIGTESVEVSEKLSRILRQN-------RIEHTVLNAKNHAQEAEIIAGAGKL--GAVTVAT 623 (970)
T ss_pred HHHHHHHHHHHhC--CCCEEEEeCcHHHHHHHHHHHHHc-------CCcceecccchhhhHHHHHHhcCCC--CcEEEee
Confidence 3445555555554 457999999999999999999976 6776777776433333333333333 3689999
Q ss_pred CcccccCCCCCe--------eEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 483 NIAETSITIPGI--------VYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 483 dvAergldIp~V--------~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|.|.||-||.== =|||-+. .+.|.---.|=.|||||.|. |.+--+.
T Consensus 624 NmAGRGTDIkl~~~v~~~GGLhVIgTe------------------r~es~Rid~Ql~GRagRQGdpGss~f~l 678 (970)
T PRK12899 624 NMAGRGTDIKLDEEAVAVGGLYVIGTS------------------RHQSRRIDRQLRGRCARLGDPGAAKFFL 678 (970)
T ss_pred ccccCCcccccCchHHhcCCcEEEeec------------------cCchHHHHHHHhcccccCCCCCceeEEE
Confidence 999999998522 2555544 33455555689999999997 8765433
No 124
>KOG0353|consensus
Probab=99.27 E-value=3.3e-11 Score=127.62 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=78.7
Q ss_pred HHHHHHHHhhCC-CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCc
Q psy2470 406 VDTAIKIHESMP-VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNI 484 (858)
Q Consensus 406 ~~~l~~i~~~~~-~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdv 484 (858)
.+.+.+++...- +..-||+|=++.+++.++..|+.+ |+.+..+|+.|.++++.-+-+..-.|++.|||||=-
T Consensus 304 ~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~-------gi~a~~yha~lep~dks~~hq~w~a~eiqvivatva 376 (695)
T KOG0353|consen 304 IEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNH-------GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVA 376 (695)
T ss_pred HHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhc-------CccccccccccCccccccccccccccceEEEEEEee
Confidence 333444443332 334699999999999999999987 999999999999999999999999999999999999
Q ss_pred ccccCCCCCeeEEEcCCCccce
Q psy2470 485 AETSITIPGIVYVIDPGFVKAR 506 (858)
Q Consensus 485 AergldIp~V~~VId~g~~k~~ 506 (858)
-..|||-|+|++||.-.+||..
T Consensus 377 fgmgidkpdvrfvihhsl~ksi 398 (695)
T KOG0353|consen 377 FGMGIDKPDVRFVIHHSLPKSI 398 (695)
T ss_pred ecccCCCCCeeEEEecccchhH
Confidence 9999999999999996555543
No 125
>KOG0950|consensus
Probab=99.25 E-value=2.5e-11 Score=142.69 Aligned_cols=114 Identities=15% Similarity=0.187 Sum_probs=91.5
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhccCC-------C------------------------CcceEEEeccCCCCHHHHHHh
Q psy2470 419 GDILAFVIGLEQIEHIIGILKQYHNQR-------E------------------------DLKLLILPMHGSLPNNEQIKV 467 (858)
Q Consensus 419 g~iLVFl~t~~~i~~l~~~L~~~~~~~-------~------------------------~~~~~v~~LHg~l~q~~r~~v 467 (858)
.++|||||++..|+.++..+.+....+ + .-.+.+...|+|++.++|+-+
T Consensus 461 ~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~i 540 (1008)
T KOG0950|consen 461 SSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREII 540 (1008)
T ss_pred CeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHH
Confidence 359999999999999997765321000 0 112346678999999999999
Q ss_pred cCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEE
Q psy2470 468 FRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYR 544 (858)
Q Consensus 468 ~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~r 544 (858)
...|++|..+|++||+..+.|++.|..+++|-.-+ .| ....+..+|.|++|||||+|- |.++-
T Consensus 541 E~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~---------~g-----~~~l~~~~YkQM~GRAGR~gidT~GdsiL 606 (1008)
T KOG0950|consen 541 EAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPY---------VG-----REFLTRLEYKQMVGRAGRTGIDTLGDSIL 606 (1008)
T ss_pred HHHHHhcCeEEEEecchhhccCcCCcceeEEeCCc---------cc-----cchhhhhhHHhhhhhhhhcccccCcceEE
Confidence 99999999999999999999999999999997321 12 145678899999999999985 99998
Q ss_pred eh
Q psy2470 545 KN 546 (858)
Q Consensus 545 L~ 546 (858)
.+
T Consensus 607 I~ 608 (1008)
T KOG0950|consen 607 II 608 (1008)
T ss_pred Ee
Confidence 88
No 126
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.25 E-value=5e-11 Score=145.17 Aligned_cols=102 Identities=24% Similarity=0.277 Sum_probs=84.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCC----CCCCcEEEEEecCcccccCCCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRP----TPRAMRKIVIATNIAETSITIP 492 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~----f~~g~~kVlvATdvAergldIp 492 (858)
..++++|-+||...+.++++.|+.. +..+..+||.+....|.+..+. |+.+.-.|+|||-|.|-|+||+
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~-------~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid 511 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEK-------GPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID 511 (733)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHhc-------CCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc
Confidence 4689999999999999999999966 2379999999999999988763 2456778999999999999985
Q ss_pred CeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC--C-ceEEEeh
Q psy2470 493 GIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR--S-GHVYRKN 546 (858)
Q Consensus 493 ~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g--~-G~~~rL~ 546 (858)
.+++|= .+.+..+.+||+||.+|.| . |..|-.-
T Consensus 512 -fd~mIT--------------------e~aPidSLIQR~GRv~R~g~~~~~~~~v~~ 547 (733)
T COG1203 512 -FDVLIT--------------------ELAPIDSLIQRAGRVNRHGKKENGKIYVYN 547 (733)
T ss_pred -cCeeee--------------------cCCCHHHHHHHHHHHhhcccccCCceeEee
Confidence 566663 4567788999999999999 3 6666544
No 127
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.25 E-value=6.7e-12 Score=108.80 Aligned_cols=81 Identities=32% Similarity=0.585 Sum_probs=72.6
Q ss_pred HHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCC
Q psy2470 433 HIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNT 512 (858)
Q Consensus 433 ~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~ 512 (858)
.+++.|+.. ++.+..+||++++++|..+++.|.+|..+|+++|+++++|+|+|++++||. ++
T Consensus 2 ~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~--------~~--- 63 (82)
T smart00490 2 ELAELLKEL-------GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII--------YD--- 63 (82)
T ss_pred HHHHHHHHC-------CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE--------eC---
Confidence 355666655 788999999999999999999999999999999999999999999999999 44
Q ss_pred CCCcceeeecCHhhHHHhhcccCCCC
Q psy2470 513 LTNSLVVVPISKASAVQRAGRAGRVR 538 (858)
Q Consensus 513 g~~~l~~~pis~~~~~qR~GRaGR~g 538 (858)
.|.+...+.||+||+||.|
T Consensus 64 -------~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 64 -------LPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred -------CCCCHHHHHHhhcccccCC
Confidence 3788999999999999975
No 128
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.24 E-value=5.5e-12 Score=115.33 Aligned_cols=92 Identities=30% Similarity=0.451 Sum_probs=68.0
Q ss_pred HHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHHhhhc
Q psy2470 619 SEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKE 698 (858)
Q Consensus 619 a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~~~~ 698 (858)
|++.|..+|++ + +++. +| ++|+.++.||++|+++++ ++. +
T Consensus 2 A~~~L~~Lgal-----d-~~~~---lT-----~lG~~~~~lPl~p~~a~~------------------------Ll~--~ 41 (102)
T PF04408_consen 2 ALELLKSLGAL-----D-ENGN---LT-----PLGRKMSQLPLDPRLAKM------------------------LLY--G 41 (102)
T ss_dssp HHHHHHHTTSB-------TTS----B------HHHHHHTTSSS-HHHHHH------------------------HHH--H
T ss_pred HHHHHHHCCCC-----C-CCCC---cC-----HHHHHHHHCCCchHhHhH------------------------hhh--c
Confidence 68899999999 6 5555 89 999999999999999999 888 8
Q ss_pred cccCCchhhHHHHhhcccCccccCCCChhhHHHHHHHHhcc---------ccCCCchhhHH
Q psy2470 699 RDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNF---------EVEQGDLLTLL 750 (858)
Q Consensus 699 ~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~f---------~~~~gDhltlL 750 (858)
..++|.+++++|+|+|+++++|..+.+++...+....+++| .+..|||+|+|
T Consensus 42 ~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 42 IQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKKKFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp HHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHHTT----------BTTBHHHHHH
T ss_pred cccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHHHhhhhhcccccCCCCCCHHhcC
Confidence 89999999999999999999999987766444443344444 67889999986
No 129
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.16 E-value=2.5e-11 Score=144.58 Aligned_cols=96 Identities=18% Similarity=0.225 Sum_probs=83.0
Q ss_pred ccceeeccCHHHHhccccCCCcccccCC---hhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccCCCc
Q psy2470 41 SRKFSRLYTEASFSQLNECTPPEMQRTE---LSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVNGNL 117 (858)
Q Consensus 41 ~g~c~rLy~~~~~~~~~~~~~pei~r~~---l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~~l 117 (858)
+|+||||||++++ .| |+|.+ |+++||++|+||++++ ++.|+|||+.+++.+|++.|+.+||+|+ +|
T Consensus 504 ~G~c~rLyt~~~~-------~p-I~ri~~~~L~~~vL~lk~~g~~~~-~~~~ldpP~~~~l~~A~~~L~~lga~~~--~l 572 (675)
T PHA02653 504 PGTYVYFYDLDLL-------KP-IKRIDSEFLHNYILYAKYFNLTLP-EDLFVIPSNLDRLRKTEEYIDSFNISIE--KW 572 (675)
T ss_pred CCeEEEEECHHHh-------HH-HHHHhHHHHHHHHHHHHHcCCCCc-ccccCCCCCHHHHHHHHHHHHHcCCCch--hh
Confidence 8999999999975 24 66666 8999999999999655 5669999999999999999999998866 79
Q ss_pred chHH--HhhhhcCCCCchhhhHHhhcccccchHHHHHH
Q psy2470 118 TKPV--GETMAEMPLHPIHAKVLLSSGSVLDSAVEILL 153 (858)
Q Consensus 118 t~~l--G~~ma~lp~~p~~~~~l~~s~s~~~~~~~~~~ 153 (858)
| .| |+.|+.+ +++|.++. |.+.+.+++.++
T Consensus 573 ~-~l~~~~~~~~~----~~~k~~~~-g~~~~~~l~~~~ 604 (675)
T PHA02653 573 Y-EILSNYYVNML----EYAKIYVK-GGILAEALDNFE 604 (675)
T ss_pred h-hhhccccHHHH----HHhHHHhc-ccHhHHHHhhhh
Confidence 9 59 9999999 99999988 777777766554
No 130
>KOG0953|consensus
Probab=99.08 E-value=2.4e-09 Score=119.39 Aligned_cols=128 Identities=19% Similarity=0.180 Sum_probs=98.2
Q ss_pred HHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCC--CCCcEEEEEecCcccc
Q psy2470 410 IKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPT--PRAMRKIVIATNIAET 487 (858)
Q Consensus 410 ~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f--~~g~~kVlvATdvAer 487 (858)
..-+.+..+|+++|=+ ++++|-.+...+++. .+..+..+||+||++-|..--..| +++..+|+||||-...
T Consensus 349 ~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~------g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGM 421 (700)
T KOG0953|consen 349 LGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKA------GNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGM 421 (700)
T ss_pred hhhhccCCCCCeEEEe-ehhhHHHHHHHHHHh------cCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccc
Confidence 3334556689988866 467788899999876 255689999999999765443334 4589999999999999
Q ss_pred cCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC----ceEEEeh-hhHhhhhh
Q psy2470 488 SITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS----GHVYRKN-FMYNRLFI 554 (858)
Q Consensus 488 gldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~----G~~~rL~-~~~~~l~~ 554 (858)
|+++ +|+-||=+.+.| |+ | -.+.+++..++.|=+|||||.|. |.+-+|+ ++...+.+
T Consensus 422 GLNL-~IrRiiF~sl~K---ys---g---~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eDL~~L~~ 483 (700)
T KOG0953|consen 422 GLNL-NIRRIIFYSLIK---YS---G---RETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSEDLKLLKR 483 (700)
T ss_pred cccc-ceeEEEEeeccc---CC---c---ccceeccHHHHHHHhhcccccccCCcCceEEEeeHhhHHHHHH
Confidence 9998 788888644433 54 2 23478999999999999999985 9999999 88776654
No 131
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.04 E-value=1.5e-09 Score=128.48 Aligned_cols=133 Identities=16% Similarity=0.195 Sum_probs=91.4
Q ss_pred CCceEEEEecccCH-----HHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEE
Q psy2470 349 TQLKLIISSATVDA-----EEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILA 423 (858)
Q Consensus 349 ~~~q~il~SAT~~~-----~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLV 423 (858)
+.-++++.|||... ..|.+.++-...+. . . ...++...|... +-. ..+..+.+.... ..||
T Consensus 275 k~g~LvvsSATg~~rg~R~~LfReLlgFevG~~--~---~-~LRNIvD~y~~~---~~~----e~~~elvk~lG~-GgLI 340 (1187)
T COG1110 275 KLGILVVSSATGKPRGSRLKLFRELLGFEVGSG--G---E-GLRNIVDIYVES---ESL----EKVVELVKKLGD-GGLI 340 (1187)
T ss_pred CCceEEEeeccCCCCCchHHHHHHHhCCccCcc--c---h-hhhheeeeeccC---ccH----HHHHHHHHHhCC-CeEE
Confidence 45688999999933 34555554211100 0 0 012333344443 222 233344444434 3799
Q ss_pred EcCC---HHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEe----cCcccccCCCC-Cee
Q psy2470 424 FVIG---LEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIA----TNIAETSITIP-GIV 495 (858)
Q Consensus 424 Fl~t---~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvA----TdvAergldIp-~V~ 495 (858)
|+|. ++.++.+++.|+.+ |+.+...|+. ..+.++.|..|+..|+|. ..++-||||.| -|+
T Consensus 341 fV~~d~G~e~aeel~e~Lr~~-------Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rir 408 (1187)
T COG1110 341 FVPIDYGREKAEELAEYLRSH-------GINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIR 408 (1187)
T ss_pred EEEcHHhHHHHHHHHHHHHhc-------CceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhhee
Confidence 9999 99999999999988 9999999984 267899999999999986 47899999999 578
Q ss_pred EEEcCCCcccee
Q psy2470 496 YVIDPGFVKARW 507 (858)
Q Consensus 496 ~VId~g~~k~~~ 507 (858)
|+|=.|.||.+.
T Consensus 409 YaIF~GvPk~rf 420 (1187)
T COG1110 409 YAVFYGVPKFRF 420 (1187)
T ss_pred EEEEecCCceee
Confidence 999999997653
No 132
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=98.93 E-value=9.4e-10 Score=98.57 Aligned_cols=89 Identities=38% Similarity=0.524 Sum_probs=75.1
Q ss_pred HHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHHhhhc
Q psy2470 619 SEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKE 698 (858)
Q Consensus 619 a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~~~~ 698 (858)
|.+.|..+|++ + +++. +| ++|+.|++||+||+++++ ++. +
T Consensus 2 A~~~L~~LgAl-----d-~~~~---lT-----~lG~~m~~lPl~Prla~~------------------------Ll~--a 41 (92)
T smart00847 2 ALELLYELGAL-----D-DDGR---LT-----PLGRKMAELPLDPRLAKM------------------------LLA--A 41 (92)
T ss_pred HHHHHHHCCCc-----C-CCCC---cC-----HHHHHHHHCCCChHHHHH------------------------HHH--H
Confidence 67899999999 6 4444 88 999999999999999999 888 6
Q ss_pred ccc-CCchhhHHHHhhcccCccccCCCChhhHHHHHHHHhccccC-CCchhhHH
Q psy2470 699 RDF-ECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVE-QGDLLTLL 750 (858)
Q Consensus 699 ~~~-~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~f~~~-~gDhltlL 750 (858)
..+ +|.+++++|+|++++.++|..+ .. ..+....+..|.+. .|||++++
T Consensus 42 ~~~~~c~~~~~~i~a~ls~~~~~~~~-~~--~~~~~~~~~~~~~~~~~D~~~~l 92 (92)
T smart00847 42 AELFGCLDEILTIAAMLSVGDPFPRP-EK--RAEADAARRRFASGRESDHLTLL 92 (92)
T ss_pred HhhcCcHHHHHHHHHHhcCCCCcCCc-hH--HHHHHHHHHHccCCCCCChhhhC
Confidence 677 8999999999999999988766 22 25666678888887 89999874
No 133
>KOG0921|consensus
Probab=98.88 E-value=6e-11 Score=137.25 Aligned_cols=341 Identities=6% Similarity=-0.153 Sum_probs=234.2
Q ss_pred hHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHH
Q psy2470 186 PLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVE 265 (858)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~ 265 (858)
.+.|.+..++.... +..+-+.|||||| ...|+.... +.... .+..-+-+++-+|+++-|...+.+
T Consensus 409 q~aq~iLe~~~~ns---~g~~~na~v~qpr-------risaisiae-rva~e----r~e~~g~tvgy~vRf~Sa~prpyg 473 (1282)
T KOG0921|consen 409 QVAQFLLESFLENS---NGASFNAVVSQPR-------RISAISLAE-RVANE----RGEEVGETCGYNVRFDSATPRPYG 473 (1282)
T ss_pred HHHHHHHHHHhhcc---ccccccceecccc-------ccchHHHHH-HHHHh----hHHhhccccccccccccccccccc
Confidence 45555555553322 4456689999999 344433211 11111 011122357889999999999888
Q ss_pred HHHHhCCcCccEeeeeeEEEeccceee-cceeEEEeecCcccc-CCCccCCCcccEE------EecCCCCCchhhhhHHH
Q psy2470 266 FLTEMGCRMDFEYISRGYMFRKGRMKI-LVSKIFKMSQGKPSD-SGVEPISQSYLVE------LSILAPGGQDVIGEDMK 337 (858)
Q Consensus 266 v~~e~g~~~g~~~~~vG~~vr~~~~~~-~~t~I~v~TpGrLl~-~~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk 337 (858)
++-+.++.++.. ++|..+++.... ...-+.++|.|-++. +..+- .+.|.+| +.+| ||++.-++.
T Consensus 474 ~i~fctvgvllr---~~e~glrg~sh~i~deiherdv~~dfll~~lr~m-~~ty~dl~v~lmsatId----Td~f~~~f~ 545 (1282)
T KOG0921|consen 474 SIMFCTVGVLLR---MMENGLRGISHVIIDEIHERDVDTDFVLIVLREM-ISTYRDLRVVLMSATID----TDLFTNFFS 545 (1282)
T ss_pred ceeeeccchhhh---hhhhcccccccccchhhhhhccchHHHHHHHHhh-hccchhhhhhhhhcccc----hhhhhhhhc
Confidence 877777777777 777666554322 334455789999988 43332 2223222 9999 999988887
Q ss_pred HHHHHhcccCCCCceEEEEecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEe-----------------------
Q psy2470 338 AFAEQLKPLKRTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYS----------------------- 394 (858)
Q Consensus 338 ~~~~~l~~~~~~~~q~il~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~----------------------- 394 (858)
++. |+.++|+|++++.|..++- ..+...++++.++++.++.
T Consensus 546 ~~p-----------~~~~~grt~pvq~F~led~-----~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~ 609 (1282)
T KOG0921|consen 546 SIP-----------DVTVHGRTFPVQSFFLEDI-----IQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSY 609 (1282)
T ss_pred ccc-----------ceeeccccccHHHHHHHHh-----hhhhhccCCCcCccchhhcccccCchhhhcccccccccChhh
Confidence 654 6699999999998876655 3566666665554432211
Q ss_pred -c------------CCccchHHHHHHHH------HHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEec
Q psy2470 395 -N------------DPVVNYVQGVVDTA------IKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPM 455 (858)
Q Consensus 395 -~------------~~~~~~~~~~~~~l------~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~L 455 (858)
. .......++....+ -.++.-.+++..|+|++++--+......+++..-+ +.....+.+.
T Consensus 610 ~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~il-p~Hsq~~~~e 688 (1282)
T KOG0921|consen 610 NESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEIL-PLHSQLTSQE 688 (1282)
T ss_pred cchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccc-cchhhcccHh
Confidence 0 01123333332222 12333456889999999999888888888754211 1225678889
Q ss_pred cCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccC
Q psy2470 456 HGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAG 535 (858)
Q Consensus 456 Hg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaG 535 (858)
|......++..+++....+.+++...|+.+++.+.+-.+.+|++++-.+.+.+-...-++...+.|.+.-.-.||.||++
T Consensus 689 qrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f 768 (1282)
T KOG0921|consen 689 QRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCF 768 (1282)
T ss_pred hhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccc
Confidence 99999999999999999999999999999999999999999999998887775555556666778888888899999999
Q ss_pred CCCCceEEEeh--hhHhhhhhhhhccCCCCCCCCCCCccccCcc
Q psy2470 536 RVRSGHVYRKN--FMYNRLFIHFCVSRNIPTIPNDPKDVKCDVM 577 (858)
Q Consensus 536 R~g~G~~~rL~--~~~~~l~~~~~~~~~~p~~~~~Pei~r~~L~ 577 (858)
|...+.||.+. ..+.+|.. + +. ||+.++.+.
T Consensus 769 ~lcs~arF~~l~~~~t~em~r-----~---pl---hemalTikl 801 (1282)
T KOG0921|consen 769 HLCSRARFEALEDHGTAEMFR-----T---PL---HEIALTIKL 801 (1282)
T ss_pred cccHHHHHHHHHhcCcHhhhc-----C---cc---HHHHhhHHH
Confidence 99999999988 44566766 5 66 888777654
No 134
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.81 E-value=4e-08 Score=117.01 Aligned_cols=293 Identities=15% Similarity=0.117 Sum_probs=163.3
Q ss_pred cccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeee
Q psy2470 201 PYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYIS 280 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~ 280 (858)
+|=+. |-||||||-+|+.+.- .++. ...++|++.|--.+.-|+.+++...+|.+++.-..+
T Consensus 219 ~~Ll~--GvTGSGKTEvYl~~i~---------~~L~--------~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~ 279 (730)
T COG1198 219 PFLLD--GVTGSGKTEVYLEAIA---------KVLA--------QGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSG 279 (730)
T ss_pred ceeEe--CCCCCcHHHHHHHHHH---------HHHH--------cCCEEEEEeccccchHHHHHHHHHHhCCChhhhccc
Confidence 55555 9999999933332211 1121 123689999988888999999988889877655444
Q ss_pred eeEEEeccce---eecceeEEEeecCccccCCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCC
Q psy2470 281 RGYMFRKGRM---KILVSKIFKMSQGKPSDSGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 281 vG~~vr~~~~---~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~ 350 (858)
.+-+.|.+.- ..+..+|+++|=--+.- -+.+...| -+.-+ .|-..--.+++. .++ ..-.+
T Consensus 280 Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~-----Pf~~LGLIIvDEEHD~sYKq---~~~prYhARdvA-~~R-a~~~~ 349 (730)
T COG1198 280 LSPGERYRVWRRARRGEARVVIGTRSALFL-----PFKNLGLIIVDEEHDSSYKQ---EDGPRYHARDVA-VLR-AKKEN 349 (730)
T ss_pred CChHHHHHHHHHHhcCCceEEEEechhhcC-----chhhccEEEEeccccccccC---CcCCCcCHHHHH-HHH-HHHhC
Confidence 4433333221 22557999998554433 11222222 11110 011111122222 000 11246
Q ss_pred ceEEEEecccCHHHHHHHhhcccCCCCcEEEecCeec---ceeEEEecC--Cccc----hHHHHHHHHHHHHhhCCCCCE
Q psy2470 351 LKLIISSATVDAEEICQFYNISASSNATILSVKGHLY---PVSVYYSND--PVVN----YVQGVVDTAIKIHESMPVGDI 421 (858)
Q Consensus 351 ~q~il~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~---~v~~~~~~~--~~~~----~~~~~~~~l~~i~~~~~~g~i 421 (858)
..+||=|||.+.|.+.+-... .-..+.+..|.. +.++..... ...+ .-...++.+.+-+. .+.++
T Consensus 350 ~pvvLgSATPSLES~~~~~~g----~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~--~geQ~ 423 (730)
T COG1198 350 APVVLGSATPSLESYANAESG----KYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLE--RGEQV 423 (730)
T ss_pred CCEEEecCCCCHHHHHhhhcC----ceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHh--cCCeE
Confidence 789999999988877665321 112333333322 222222211 1110 11222333322222 25677
Q ss_pred EEEcCCHH------------------------------------------------------------HHHHHHHHHHHh
Q psy2470 422 LAFVIGLE------------------------------------------------------------QIEHIIGILKQY 441 (858)
Q Consensus 422 LVFl~t~~------------------------------------------------------------~i~~l~~~L~~~ 441 (858)
|+|+|.+. .++++.+.|.+.
T Consensus 424 llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~ 503 (730)
T COG1198 424 LLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRL 503 (730)
T ss_pred EEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHH
Confidence 88874322 334445555544
Q ss_pred ccCCCCcceEEEeccCCCCHHH--HHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEE--c--CCCccceeccCCCCCC
Q psy2470 442 HNQREDLKLLILPMHGSLPNNE--QIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVI--D--PGFVKARWFNPNTLTN 515 (858)
Q Consensus 442 ~~~~~~~~~~v~~LHg~l~q~~--r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VI--d--~g~~k~~~yd~~~g~~ 515 (858)
-|+.++.-+-++.+... =...++.|.+|+..|||-|-+.+-|.|.|+|+.|. | +++ +.+
T Consensus 504 -----FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L-----~~~----- 568 (730)
T COG1198 504 -----FPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGL-----GSP----- 568 (730)
T ss_pred -----CCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhh-----cCC-----
Confidence 35778888888766643 45678899999999999999999999999999876 4 333 221
Q ss_pred cceeeecCHhhHHHhhcccCCCC-CceEE
Q psy2470 516 SLVVVPISKASAVQRAGRAGRVR-SGHVY 543 (858)
Q Consensus 516 ~l~~~pis~~~~~qR~GRaGR~g-~G~~~ 543 (858)
++.-.=-.-.-+.|=+|||||.+ +|.++
T Consensus 569 DfRA~Er~fqll~QvaGRAgR~~~~G~Vv 597 (730)
T COG1198 569 DFRASERTFQLLMQVAGRAGRAGKPGEVV 597 (730)
T ss_pred CcchHHHHHHHHHHHHhhhccCCCCCeEE
Confidence 11111122344778999999984 47776
No 135
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.81 E-value=2.8e-08 Score=116.58 Aligned_cols=156 Identities=19% Similarity=0.208 Sum_probs=97.5
Q ss_pred EEEEeccc--CHHHHHHHhhcccCCCCcEEEecCeeccee------EEEecCCccchHHHHHHHHHHHHhhCCCCCEEEE
Q psy2470 353 LIISSATV--DAEEICQFYNISASSNATILSVKGHLYPVS------VYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAF 424 (858)
Q Consensus 353 ~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~------~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF 424 (858)
+-.|+.|. ..++|.+.++ -+++.||.. .|+. .+|.. ..++..+.++.+...|.. +.+|||.
T Consensus 365 LsGMTGTa~t~~~Ef~~iY~------l~Vv~IPtn-kp~~R~d~~d~iy~t--~~~k~~Aii~ei~~~~~~--GrPVLVg 433 (764)
T PRK12326 365 VCGMTGTAVAAGEQLRQFYD------LGVSVIPPN-KPNIREDEADRVYAT--AAEKNDAIVEHIAEVHET--GQPVLVG 433 (764)
T ss_pred heeecCCChhHHHHHHHHhC------CcEEECCCC-CCceeecCCCceEeC--HHHHHHHHHHHHHHHHHc--CCCEEEE
Confidence 34466665 3445555554 456666643 2222 12221 123344555556666554 5689999
Q ss_pred cCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCC------------
Q psy2470 425 VIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIP------------ 492 (858)
Q Consensus 425 l~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp------------ 492 (858)
+.+-++.+.+++.|.+. +++...|++.-...|-.-+-++-++| .|.||||.|.||-||.
T Consensus 434 t~sI~~SE~ls~~L~~~-------gI~h~vLNAk~~~~EA~IIa~AG~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V 504 (764)
T PRK12326 434 THDVAESEELAERLRAA-------GVPAVVLNAKNDAEEARIIAEAGKYG--AVTVSTQMAGRGTDIRLGGSDEADRDRV 504 (764)
T ss_pred eCCHHHHHHHHHHHHhC-------CCcceeeccCchHhHHHHHHhcCCCC--cEEEEecCCCCccCeecCCCcccchHHH
Confidence 99999999999999977 77777788764444432333333333 5889999999999986
Q ss_pred ---CeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 493 ---GIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 493 ---~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|==|||=+.+ +.|+--=.|=.|||||.|. |.+--+.
T Consensus 505 ~~~GGLhVIgTer------------------heSrRID~QLrGRaGRQGDpGss~f~l 544 (764)
T PRK12326 505 AELGGLHVIGTGR------------------HRSERLDNQLRGRAGRQGDPGSSVFFV 544 (764)
T ss_pred HHcCCcEEEeccC------------------CchHHHHHHHhcccccCCCCCceeEEE
Confidence 1125555443 3444444688999999996 7654433
No 136
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=98.73 E-value=2.4e-09 Score=97.93 Aligned_cols=59 Identities=44% Similarity=0.526 Sum_probs=42.1
Q ss_pred HHHHHHHhcCccccCCCcchHHHhhhhcCCCCchhhhHHhhccccc----------chHHHHHHHhhhhh
Q psy2470 100 VALELLYSLGAMDVNGNLTKPVGETMAEMPLHPIHAKVLLSSGSVL----------DSAVEILLHRLRGL 159 (858)
Q Consensus 100 ~a~~~L~~l~ald~~~~lt~~lG~~ma~lp~~p~~~~~l~~s~s~~----------~~~~~~~~~r~~~~ 159 (858)
+|++.|+.+||+|++|+|| ++|+.|+.||++|++|+||+.+..+. ..+++++|.++.+.
T Consensus 1 ~A~~~L~~Lgald~~~~lT-~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~ 69 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLT-PLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDK 69 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B--HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCG
T ss_pred CHHHHHHHCCCCCCCCCcC-HHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHH
Confidence 5899999999999999999 89999999999999999999877765 34457777776433
No 137
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=98.67 E-value=1.2e-08 Score=91.45 Aligned_cols=44 Identities=57% Similarity=0.939 Sum_probs=41.1
Q ss_pred HHHHHHHhcCccccCCCcchHHHhhhhcCCCCchhhhHHhhcccc
Q psy2470 100 VALELLYSLGAMDVNGNLTKPVGETMAEMPLHPIHAKVLLSSGSV 144 (858)
Q Consensus 100 ~a~~~L~~l~ald~~~~lt~~lG~~ma~lp~~p~~~~~l~~s~s~ 144 (858)
+|++.|+.+||+|++|+|| ++|++|++||++|++|+||+.+..+
T Consensus 1 ~A~~~L~~LgAld~~~~lT-~lG~~m~~lPl~Prla~~Ll~a~~~ 44 (92)
T smart00847 1 AALELLYELGALDDDGRLT-PLGRKMAELPLDPRLAKMLLAAAEL 44 (92)
T ss_pred CHHHHHHHCCCcCCCCCcC-HHHHHHHHCCCChHHHHHHHHHHhh
Confidence 4889999999999999999 7999999999999999999987765
No 138
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.59 E-value=8.4e-08 Score=98.77 Aligned_cols=139 Identities=9% Similarity=-0.008 Sum_probs=75.0
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
+-+.|+||+||| ..+.+|.+.. +.... ......+++++|+++++.|.++.+.+ ++...+.. ++.
T Consensus 39 ~li~~~TG~GKT-----~~~~~~~l~~----~~~~~---~~~~~~viii~p~~~L~~q~~~~~~~-~~~~~~~~---~~~ 102 (203)
T cd00268 39 VIGQAQTGSGKT-----AAFLIPILEK----LDPSP---KKDGPQALILAPTRELALQIAEVARK-LGKHTNLK---VVV 102 (203)
T ss_pred EEEECCCCCcHH-----HHHHHHHHHH----HHhhc---ccCCceEEEEcCCHHHHHHHHHHHHH-HhccCCce---EEE
Confidence 345799999999 3333332221 11110 01234689999999999999876643 32222332 221
Q ss_pred EEeccc------eeecceeEEEeecCcccc-CCCc-cCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCC
Q psy2470 284 MFRKGR------MKILVSKIFKMSQGKPSD-SGVE-PISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRT 349 (858)
Q Consensus 284 ~vr~~~------~~~~~t~I~v~TpGrLl~-~~~~-~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~ 349 (858)
..+... ......+|+|+||+.+++ +.+. ..+..+..+ .+.+ .++...+...+. ..++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~----~~~~~~~~~~~~-----~l~~ 173 (203)
T cd00268 103 IYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD----MGFEDQIREILK-----LLPK 173 (203)
T ss_pred EECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc----cChHHHHHHHHH-----hCCc
Confidence 111111 111357899999999988 4333 334444444 2223 222222222222 3456
Q ss_pred CceEEEEecccC--HHHHHH
Q psy2470 350 QLKLIISSATVD--AEEICQ 367 (858)
Q Consensus 350 ~~q~il~SAT~~--~~~~~~ 367 (858)
+.|+++||||+. ++.+..
T Consensus 174 ~~~~~~~SAT~~~~~~~~~~ 193 (203)
T cd00268 174 DRQTLLFSATMPKEVRDLAR 193 (203)
T ss_pred ccEEEEEeccCCHHHHHHHH
Confidence 899999999994 444443
No 139
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.57 E-value=6.3e-07 Score=108.51 Aligned_cols=101 Identities=15% Similarity=0.154 Sum_probs=73.1
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHH---------------------HHHHhcCCCCC-Cc
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNN---------------------EQIKVFRPTPR-AM 475 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~---------------------~r~~v~~~f~~-g~ 475 (858)
.++.+||+.+++.+..+.+.|.+.... ..+...+.++++.+.+ ....+.++|++ +.
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~--~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~ 591 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNE--KFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEEN 591 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhccc--ccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCC
Confidence 489999999999999999998765221 0023455555543332 12356777765 67
Q ss_pred EEEEEecCcccccCCCCCeeEEE-cCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCC-CCc
Q psy2470 476 RKIVIATNIAETSITIPGIVYVI-DPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRV-RSG 540 (858)
Q Consensus 476 ~kVlvATdvAergldIp~V~~VI-d~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~-g~G 540 (858)
.+|||.+|..-+|+|.|.+..++ | .|......+|-+||+-|. .+|
T Consensus 592 ~~ilIVvdmllTGFDaP~l~tLyld--------------------Kplk~h~LlQai~R~nR~~~~~ 638 (667)
T TIGR00348 592 PKLLIVVDMLLTGFDAPILNTLYLD--------------------KPLKYHGLLQAIARTNRIDGKD 638 (667)
T ss_pred ceEEEEEcccccccCCCccceEEEe--------------------ccccccHHHHHHHHhccccCCC
Confidence 89999999999999999998766 5 455555688999999994 443
No 140
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.57 E-value=2.2e-07 Score=111.66 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEE
Q psy2470 401 YVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVI 480 (858)
Q Consensus 401 ~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlv 480 (858)
+..+.++.+...+.. +.+|||-+.+-+..+.+++.|.+. ++..-.|.+.-...|-.-+-++-++| .|.|
T Consensus 434 K~~Ai~~ei~~~~~~--GrPVLVGT~SVe~SE~ls~~L~~~-------gi~h~VLNAk~~~~EA~IIa~AG~~G--aVTI 502 (913)
T PRK13103 434 KYAAIITDIKECMAL--GRPVLVGTATIETSEHMSNLLKKE-------GIEHKVLNAKYHEKEAEIIAQAGRPG--ALTI 502 (913)
T ss_pred HHHHHHHHHHHHHhC--CCCEEEEeCCHHHHHHHHHHHHHc-------CCcHHHhccccchhHHHHHHcCCCCC--cEEE
Confidence 344555556666654 568999999999999999999976 66555566654444433333333333 5889
Q ss_pred ecCcccccCCCC
Q psy2470 481 ATNIAETSITIP 492 (858)
Q Consensus 481 ATdvAergldIp 492 (858)
|||.|.||-||.
T Consensus 503 ATNMAGRGTDIk 514 (913)
T PRK13103 503 ATNMAGRGTDIL 514 (913)
T ss_pred eccCCCCCCCEe
Confidence 999999999984
No 141
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.55 E-value=2e-08 Score=99.86 Aligned_cols=136 Identities=10% Similarity=0.074 Sum_probs=76.2
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
+-+.|+|||||| .++.+|.+..... + ....++++.|+++++.|.++++.+..+. .+.. +..
T Consensus 17 ~li~aptGsGKT-----~~~~~~~l~~~~~---------~-~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~---~~~ 77 (169)
T PF00270_consen 17 VLISAPTGSGKT-----LAYILPALNRLQE---------G-KDARVLIIVPTRALAEQQFERLRKFFSN-TNVR---VVL 77 (169)
T ss_dssp EEEECSTTSSHH-----HHHHHHHHHHHHT---------T-SSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSS---EEE
T ss_pred EEEECCCCCccH-----HHHHHHHHhhhcc---------C-CCceEEEEeecccccccccccccccccc-cccc---ccc
Confidence 446799999999 4444443321110 1 1125799999999999999988665554 2222 221
Q ss_pred EEeccc-------eeecceeEEEeecCcccc-CCC-ccCCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCC
Q psy2470 284 MFRKGR-------MKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRT 349 (858)
Q Consensus 284 ~vr~~~-------~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~ 349 (858)
..+... ......+|+|+||++|++ +.. ...+.++.++ ..+. .+.....++.+...++ ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~----~~~~~~~~~~i~~~~~--~~~ 151 (169)
T PF00270_consen 78 LHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLS----DETFRAMLKSILRRLK--RFK 151 (169)
T ss_dssp ESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHH----HTTHHHHHHHHHHHSH--TTT
T ss_pred ccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccc----cccHHHHHHHHHHHhc--CCC
Confidence 111111 111358999999999999 433 1233445554 2222 1111122333332221 123
Q ss_pred CceEEEEecccCHHHH
Q psy2470 350 QLKLIISSATVDAEEI 365 (858)
Q Consensus 350 ~~q~il~SAT~~~~~~ 365 (858)
+.|+++||||+. ..+
T Consensus 152 ~~~~i~~SAT~~-~~~ 166 (169)
T PF00270_consen 152 NIQIILLSATLP-SNV 166 (169)
T ss_dssp TSEEEEEESSST-HHH
T ss_pred CCcEEEEeeCCC-hhH
Confidence 689999999997 443
No 142
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.52 E-value=6.9e-07 Score=99.93 Aligned_cols=168 Identities=20% Similarity=0.204 Sum_probs=119.5
Q ss_pred CceEEEEecccCHHHHHHHhhcccCCCCcEEEecCeecc-eeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCH
Q psy2470 350 QLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYP-VSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGL 428 (858)
Q Consensus 350 ~~q~il~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~-v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~ 428 (858)
-.|+|..|||....++..-=+.. --.++.-.|-..| +++. +....++..+..+..-.. ....+||-+-|+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~v---veQiIRPTGLlDP~ievR----p~~~QvdDL~~EI~~r~~--~~eRvLVTtLTK 456 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNV---VEQIIRPTGLLDPEIEVR----PTKGQVDDLLSEIRKRVA--KNERVLVTTLTK 456 (663)
T ss_pred cCCEEEEECCCChHHHHhccCce---eEEeecCCCCCCCceeee----cCCCcHHHHHHHHHHHHh--cCCeEEEEeehH
Confidence 36999999999554444321100 0011211222222 1221 223334444444443322 246899999999
Q ss_pred HHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceec
Q psy2470 429 EQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWF 508 (858)
Q Consensus 429 ~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~y 508 (858)
+.+|.+.+.|.+. |+++--|||++..-||..++...+.|...|||--|++--|||||.|+.|-=.+ -
T Consensus 457 kmAEdLT~Yl~e~-------gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlD------A 523 (663)
T COG0556 457 KMAEDLTEYLKEL-------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILD------A 523 (663)
T ss_pred HHHHHHHHHHHhc-------CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEee------c
Confidence 9999999999988 99999999999999999999999999999999999999999999999997411 1
Q ss_pred cCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 509 NPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 509 d~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
| .-| ..-|-.+.+|=+|||+|.-.|.++-..
T Consensus 524 D-KeG------FLRse~SLIQtIGRAARN~~GkvIlYA 554 (663)
T COG0556 524 D-KEG------FLRSERSLIQTIGRAARNVNGKVILYA 554 (663)
T ss_pred C-ccc------cccccchHHHHHHHHhhccCCeEEEEc
Confidence 1 123 346777899999999999889988643
No 143
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.24 E-value=5.6e-06 Score=99.45 Aligned_cols=79 Identities=24% Similarity=0.315 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCC-C-HHHHHHhcCCCCCCcEEEEE
Q psy2470 403 QGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSL-P-NNEQIKVFRPTPRAMRKIVI 480 (858)
Q Consensus 403 ~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l-~-q~~r~~v~~~f~~g~~kVlv 480 (858)
.+.++.+...+.. +.+|||-+.+-+..+.+++.|.+. |++.-.|++.- . ..|-.-|-++=++| .|.|
T Consensus 411 ~AI~~ei~~~~~~--grPVLIgT~SIe~SE~ls~~L~~~-------gi~h~vLNAk~~~~~~EA~IIA~AG~~G--~VTI 479 (870)
T CHL00122 411 RAIADECLQMHQT--GRPILIGTTTIEKSELLSQLLKEY-------RLPHQLLNAKPENVRRESEIVAQAGRKG--SITI 479 (870)
T ss_pred HHHHHHHHHHHhc--CCCEEEeeCCHHHHHHHHHHHHHc-------CCccceeeCCCccchhHHHHHHhcCCCC--cEEE
Confidence 3445555555543 568999999999999999999977 77777777752 2 33333333333333 5889
Q ss_pred ecCcccccCCCC
Q psy2470 481 ATNIAETSITIP 492 (858)
Q Consensus 481 ATdvAergldIp 492 (858)
|||.|.||-||.
T Consensus 480 ATNMAGRGTDI~ 491 (870)
T CHL00122 480 ATNMAGRGTDII 491 (870)
T ss_pred eccccCCCcCee
Confidence 999999998874
No 144
>KOG4150|consensus
Probab=98.19 E-value=6.7e-06 Score=92.05 Aligned_cols=168 Identities=19% Similarity=0.182 Sum_probs=116.9
Q ss_pred CCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCeecceeEEEe--cCCc-------cchHHHHHHHHHHHHhhC
Q psy2470 348 RTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGHLYPVSVYYS--NDPV-------VNYVQGVVDTAIKIHESM 416 (858)
Q Consensus 348 ~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~--~~~~-------~~~~~~~~~~l~~i~~~~ 416 (858)
...+|++=-|||+ .++...+.|+- +....+.++|....-+.... +... .+++......+.++...
T Consensus 449 ~~~~~~~~~~~~~K~~~~~~~~~~~~---~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~- 524 (1034)
T KOG4150|consen 449 SINMGVYDGDTPYKDRTRLRSELANL---SELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQH- 524 (1034)
T ss_pred hcCcceEeCCCCcCCHHHHHHHhcCC---cceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHc-
Confidence 4578999999999 34555566653 24566777776433333222 1111 12222233333444333
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcce--EEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCe
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKL--LILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGI 494 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~--~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V 494 (858)
.-+.|.||+.++-|+.+....++.... ..+.+ .+..+.||-..++|+++....-.|+.+-|+|||-+|-||||.+.
T Consensus 525 -~~R~IAFC~~R~~CEL~~~~~R~I~~E-T~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~L 602 (1034)
T KOG4150|consen 525 -GLRCIAFCPSRKLCELVLCLTREILAE-TAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHL 602 (1034)
T ss_pred -CCcEEEeccHHHHHHHHHHHHHHHHHH-hhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccc
Confidence 447899999999998887766543110 01111 24567899999999999888778999999999999999999999
Q ss_pred eEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC
Q psy2470 495 VYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS 539 (858)
Q Consensus 495 ~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~ 539 (858)
+.|+.+|+ |-|.++..|-.|||||-.+
T Consensus 603 DAVl~~GF------------------P~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 603 DAVLHLGF------------------PGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred eeEEEccC------------------chhHHHHHHHhccccccCC
Confidence 99999994 7888999999999999765
No 145
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.16 E-value=1e-05 Score=96.74 Aligned_cols=154 Identities=21% Similarity=0.240 Sum_probs=97.4
Q ss_pred eEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCeeccee------EEEecCCccchHHHHHHHHHHHHhhCCCCCEEE
Q psy2470 352 KLIISSATV--DAEEICQFYNISASSNATILSVKGHLYPVS------VYYSNDPVVNYVQGVVDTAIKIHESMPVGDILA 423 (858)
Q Consensus 352 q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~------~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLV 423 (858)
++-.|+.|. ..++|.+.++ -.++.||.. .|+. .+|.. ......+.++.+...+.. +.+|||
T Consensus 363 kLsGMTGTA~te~~Ef~~iY~------l~Vv~IPTn-kP~~R~D~~d~iy~t--~~~K~~Aii~ei~~~~~~--gqPVLV 431 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDIYN------MRVNVVPTN-KPVIRKDEPDSIFGT--KHAKWKAVVKEVKRVHKK--GQPILI 431 (925)
T ss_pred hhhccCCCCHHHHHHHHHHhC------CCEEECCCC-CCeeeeeCCCcEEEc--HHHHHHHHHHHHHHHHhc--CCCEEE
Confidence 456788887 3445666554 567777643 2322 12221 122334445555555543 568999
Q ss_pred EcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCee--------
Q psy2470 424 FVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIV-------- 495 (858)
Q Consensus 424 Fl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~-------- 495 (858)
.+.+.+..+.+++.|.+. |+..-.|++.-...|-.-|-++=++ -.|.||||.|.||-||.==.
T Consensus 432 gT~SIe~SE~ls~~L~~~-------gi~h~vLNAk~~e~EA~IIa~AG~~--GaVTIATNMAGRGTDI~Lg~~V~~~GGL 502 (925)
T PRK12903 432 GTAQVEDSETLHELLLEA-------NIPHTVLNAKQNAREAEIIAKAGQK--GAITIATNMAGRGTDIKLSKEVLELGGL 502 (925)
T ss_pred EeCcHHHHHHHHHHHHHC-------CCCceeecccchhhHHHHHHhCCCC--CeEEEecccccCCcCccCchhHHHcCCc
Confidence 999999999999999976 6666677775333333333232223 46899999999999997322
Q ss_pred EEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEE
Q psy2470 496 YVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVY 543 (858)
Q Consensus 496 ~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~ 543 (858)
|||-+.++.. +--=.|-.|||||.|. |.+-
T Consensus 503 hVIgTerheS------------------rRIDnQLrGRaGRQGDpGss~ 533 (925)
T PRK12903 503 YVLGTDKAES------------------RRIDNQLRGRSGRQGDVGESR 533 (925)
T ss_pred EEEecccCch------------------HHHHHHHhcccccCCCCCcce
Confidence 7777554333 2223489999999996 7543
No 146
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.11 E-value=1.9e-05 Score=94.84 Aligned_cols=80 Identities=15% Similarity=0.201 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCC-CCHHHHHHhcC-CCCCCcEEEE
Q psy2470 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGS-LPNNEQIKVFR-PTPRAMRKIV 479 (858)
Q Consensus 402 ~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~-l~q~~r~~v~~-~f~~g~~kVl 479 (858)
..+.++.+...|.. +.+|||-+.+-+.-+.+++.|.+. |+..-.|++. ...+.-..+.. +=+.| .|-
T Consensus 425 ~~Ai~~ei~~~~~~--GrPVLIgT~SVe~SE~ls~~L~~~-------gi~h~vLNAk~~~~~~EA~IIa~AG~~G--aVT 493 (939)
T PRK12902 425 WRAVANETAEMHKQ--GRPVLVGTTSVEKSELLSALLQEQ-------GIPHNLLNAKPENVEREAEIVAQAGRKG--AVT 493 (939)
T ss_pred HHHHHHHHHHHHhC--CCCEEEeeCCHHHHHHHHHHHHHc-------CCchheeeCCCcchHhHHHHHHhcCCCC--cEE
Confidence 34455555555544 568999999999999999999977 6666667765 22222223333 33333 588
Q ss_pred EecCcccccCCCC
Q psy2470 480 IATNIAETSITIP 492 (858)
Q Consensus 480 vATdvAergldIp 492 (858)
||||.|.||-||.
T Consensus 494 IATNMAGRGTDIk 506 (939)
T PRK12902 494 IATNMAGRGTDII 506 (939)
T ss_pred EeccCCCCCcCEe
Confidence 9999999998874
No 147
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.07 E-value=3.5e-05 Score=96.26 Aligned_cols=139 Identities=18% Similarity=0.227 Sum_probs=93.3
Q ss_pred chHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEE
Q psy2470 400 NYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIV 479 (858)
Q Consensus 400 ~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVl 479 (858)
++.+...+.+.++... .+|++|||+++.+..+.+++.|..... ..++.+.. .+.. ..|.++++.|++|+..||
T Consensus 657 ~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~---~~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iL 729 (850)
T TIGR01407 657 EYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPE---FEGYEVLA--QGIN-GSRAKIKKRFNNGEKAIL 729 (850)
T ss_pred HHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhcc---ccCceEEe--cCCC-ccHHHHHHHHHhCCCeEE
Confidence 3455566666666554 368999999999999999999975211 11344433 2332 578889999999999999
Q ss_pred EecCcccccCCCCCee--EEEcCCCccceeccC----------CCCCCcce--eeecCHhhHHHhhcccCCCCC--ceEE
Q psy2470 480 IATNIAETSITIPGIV--YVIDPGFVKARWFNP----------NTLTNSLV--VVPISKASAVQRAGRAGRVRS--GHVY 543 (858)
Q Consensus 480 vATdvAergldIp~V~--~VId~g~~k~~~yd~----------~~g~~~l~--~~pis~~~~~qR~GRaGR~g~--G~~~ 543 (858)
++|+...+|||+||.. .||=.++|...--|| ..|-+.+. ..|...-...|-+||.=|... |..+
T Consensus 730 lgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ 809 (850)
T TIGR01407 730 LGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIV 809 (850)
T ss_pred EEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEE
Confidence 9999999999999876 444467765321111 11111111 135455668899999999875 8766
Q ss_pred Ee
Q psy2470 544 RK 545 (858)
Q Consensus 544 rL 545 (858)
-+
T Consensus 810 il 811 (850)
T TIGR01407 810 IL 811 (850)
T ss_pred EE
Confidence 43
No 148
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.02 E-value=5.2e-05 Score=92.57 Aligned_cols=97 Identities=23% Similarity=0.198 Sum_probs=67.4
Q ss_pred EEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCC--------------------------CCCCc
Q psy2470 422 LAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRP--------------------------TPRAM 475 (858)
Q Consensus 422 LVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~--------------------------f~~g~ 475 (858)
||=+++.+.+-.+++.|...... ....+.+..+||..+...|..+.+. ...+.
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~-~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAE-EKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccc-cCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 56667777777777777644211 1235678889999877766654321 11356
Q ss_pred EEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCc
Q psy2470 476 RKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSG 540 (858)
Q Consensus 476 ~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G 540 (858)
..|+|||.|.|-|+||+ .+++|- .|.+..+.+||+||..|.|..
T Consensus 839 ~~i~v~Tqv~E~g~D~d-fd~~~~--------------------~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDHD-YDWAIA--------------------DPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred CeEEEEeeeEEEEeccc-CCeeee--------------------ccCcHHHHHHHhhcccccccC
Confidence 79999999999999984 344442 467788899999999998763
No 149
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.97 E-value=2.7e-05 Score=73.57 Aligned_cols=128 Identities=14% Similarity=0.065 Sum_probs=71.1
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
.+.++||||||...+..+..+. .. .....+++++|++.++.|..+.+...... +.. +.+.
T Consensus 4 ~i~~~~G~GKT~~~~~~~~~~~------------~~---~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~---~~~~ 63 (144)
T cd00046 4 LLAAPTGSGKTLAALLPILELL------------DS---LKGGQVLVLAPTRELANQVAERLKELFGE--GIK---VGYL 63 (144)
T ss_pred EEECCCCCchhHHHHHHHHHHH------------hc---ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcE---EEEE
Confidence 3579999999933333222211 00 12235799999999999998888766542 222 3433
Q ss_pred Eecccee------ecceeEEEeecCcccc-CCCcc-CCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCc
Q psy2470 285 FRKGRMK------ILVSKIFKMSQGKPSD-SGVEP-ISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQL 351 (858)
Q Consensus 285 vr~~~~~------~~~t~I~v~TpGrLl~-~~~~~-~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~ 351 (858)
....... ....+|+++|++.+.+ ..... ....+.++ ..+.. ............ ......
T Consensus 64 ~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~---~~~~~~~~~~~~-----~~~~~~ 135 (144)
T cd00046 64 IGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLN---QGFGLLGLKILL-----KLPKDR 135 (144)
T ss_pred ecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhh---cchHHHHHHHHh-----hCCccc
Confidence 3333322 3468999999999988 43322 22234433 22220 111111011122 345667
Q ss_pred eEEEEeccc
Q psy2470 352 KLIISSATV 360 (858)
Q Consensus 352 q~il~SAT~ 360 (858)
+++++|||+
T Consensus 136 ~~i~~saTp 144 (144)
T cd00046 136 QVLLLSATP 144 (144)
T ss_pred eEEEEeccC
Confidence 899999995
No 150
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.94 E-value=3e-05 Score=96.52 Aligned_cols=105 Identities=13% Similarity=0.120 Sum_probs=88.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCC---CcEEEEEecCcccccCCCCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPR---AMRKIVIATNIAETSITIPG 493 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~---g~~kVlvATdvAergldIp~ 493 (858)
...+||||..-....+.+.+.|... ++....+||+++.++|..+++.|.. +..-+|++|..+..||++..
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~-------g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~ 558 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYR-------GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLAT 558 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHc-------CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhh
Confidence 3568999998888888888888755 7889999999999999999999953 34567899999999999999
Q ss_pred eeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh
Q psy2470 494 IVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN 546 (858)
Q Consensus 494 V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~ 546 (858)
.++||. || .|=++....|+.||+-|-|. =.+|+|+
T Consensus 559 Ad~VIi--------yD----------~dWNP~~d~QAidRaHRIGQkk~V~VyRLI 596 (1033)
T PLN03142 559 ADIVIL--------YD----------SDWNPQVDLQAQDRAHRIGQKKEVQVFRFC 596 (1033)
T ss_pred CCEEEE--------eC----------CCCChHHHHHHHHHhhhcCCCceEEEEEEE
Confidence 999999 77 44567778899999988886 4577887
No 151
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.87 E-value=0.00019 Score=85.01 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=72.1
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHH-HhcCCCCCCcEEEEEecCcccccCCCCCeeE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQI-KVFRPTPRAMRKIVIATNIAETSITIPGIVY 496 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~-~v~~~f~~g~~kVlvATdvAergldIp~V~~ 496 (858)
.++.|||+.+...++.+.+.|++.... ..+--+..+-|+-.+.++. ..|.. ++.--+|.++-|...+|||+|.|..
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype--~~~~~a~~IT~d~~~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~n 502 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPE--YNGRYAMKITGDAEQAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVN 502 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCcc--ccCceEEEEeccchhhHHHHHHHHh-cCCCCceEEehhhhhcCCCchheee
Confidence 578999999999999999999855321 1233355556665555432 22222 3444689999999999999999887
Q ss_pred EEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC
Q psy2470 497 VIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS 539 (858)
Q Consensus 497 VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~ 539 (858)
+|= +- .--|+.-+.|++||.=|..+
T Consensus 503 lVF---------~r---------~VrSktkF~QMvGRGTRl~~ 527 (875)
T COG4096 503 LVF---------DR---------KVRSKTKFKQMVGRGTRLCP 527 (875)
T ss_pred eee---------hh---------hhhhHHHHHHHhcCccccCc
Confidence 762 21 12488899999999999765
No 152
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.87 E-value=0.001 Score=75.65 Aligned_cols=181 Identities=13% Similarity=0.086 Sum_probs=114.9
Q ss_pred ceEEEEecccCHHHHHHHhhcccCCCCcEEE----------ecCeecceeEEEecCCccchH---HH----HHHHHHHHH
Q psy2470 351 LKLIISSATVDAEEICQFYNISASSNATILS----------VKGHLYPVSVYYSNDPVVNYV---QG----VVDTAIKIH 413 (858)
Q Consensus 351 ~q~il~SAT~~~~~~~~~~~~~~~~~~~~i~----------v~g~~~~v~~~~~~~~~~~~~---~~----~~~~l~~i~ 413 (858)
+|+|++|+...++- ...|.....+-.-.+. +..-..++.+.|......+.. +. -.+.++-.+
T Consensus 216 RQtii~S~~~~pe~-~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l 294 (442)
T PF06862_consen 216 RQTIIFSSFQTPEI-NSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQL 294 (442)
T ss_pred eEeEEecCCCCHHH-HHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHh
Confidence 79999999986653 2222211000111111 111224566666654332211 11 122233333
Q ss_pred h-hCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCccc--ccCC
Q psy2470 414 E-SMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAE--TSIT 490 (858)
Q Consensus 414 ~-~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAe--rgld 490 (858)
. ....+.+|||+|+.-+--++-+.|++. ++....+|--.++.+-.++=..|..|+.+|++-|-=+= +=-.
T Consensus 295 ~~~~~~~~~LIfIPSYfDfVRlRN~lk~~-------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~ 367 (442)
T PF06862_consen 295 KRDSKMSGTLIFIPSYFDFVRLRNYLKKE-------NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYR 367 (442)
T ss_pred hhccCCCcEEEEecchhhhHHHHHHHHhc-------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhce
Confidence 3 445678999999999999999999865 78888899888898888888889999999999994332 3357
Q ss_pred CCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcc----cCCCCCceEEEehhhHhhhhh
Q psy2470 491 IPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGR----AGRVRSGHVYRKNFMYNRLFI 554 (858)
Q Consensus 491 Ip~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GR----aGR~g~G~~~rL~~~~~~l~~ 554 (858)
|.||+.||=+|+|..+.|-+. .....+. .+-.+.+.|..||..|+.+.-
T Consensus 368 irGi~~viFY~~P~~p~fY~E---------------l~n~~~~~~~~~~~~~~~~~~~lysk~D~~~L 420 (442)
T PF06862_consen 368 IRGIRHVIFYGPPENPQFYSE---------------LLNMLDESSGGEVDAADATVTVLYSKYDALRL 420 (442)
T ss_pred ecCCcEEEEECCCCChhHHHH---------------HHhhhcccccccccccCceEEEEecHhHHHHH
Confidence 999999999999888773211 1111111 112234889999977776655
No 153
>KOG1123|consensus
Probab=97.77 E-value=8.9e-05 Score=82.45 Aligned_cols=105 Identities=21% Similarity=0.285 Sum_probs=77.0
Q ss_pred HHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCC-CcEEEEEecC
Q psy2470 405 VVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPR-AMRKIVIATN 483 (858)
Q Consensus 405 ~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~-g~~kVlvATd 483 (858)
.++.+++.|.. ...+||||-..--.....+-.|.+- -+||..+|.||.++++.|+- .++.-|+-.-
T Consensus 531 aCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~Kp------------fIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSK 597 (776)
T KOG1123|consen 531 ACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGKP------------FIYGPTSQNERMKILQNFQTNPKVNTIFLSK 597 (776)
T ss_pred HHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCCc------------eEECCCchhHHHHHHHhcccCCccceEEEee
Confidence 45667777776 3667999987766555554444321 35999999999999999974 4678888889
Q ss_pred cccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC
Q psy2470 484 IAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS 539 (858)
Q Consensus 484 vAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~ 539 (858)
|+.+|+|+|..++.|. ...-.| |+-+-.||.||.=|+.+
T Consensus 598 VgDtSiDLPEAnvLIQ--------ISSH~G---------SRRQEAQRLGRILRAKk 636 (776)
T KOG1123|consen 598 VGDTSIDLPEANVLIQ--------ISSHGG---------SRRQEAQRLGRILRAKK 636 (776)
T ss_pred ccCccccCCcccEEEE--------Eccccc---------chHHHHHHHHHHHHHhh
Confidence 9999999999999997 222222 44556688888777643
No 154
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.72 E-value=0.00038 Score=83.83 Aligned_cols=112 Identities=9% Similarity=-0.075 Sum_probs=58.9
Q ss_pred CEEEccchHHHHHHHHHHHHHHhC-CcCccEeeeeeEEEeccc---eeecceeEEEeecCccccCCCccCCCcccEE---
Q psy2470 248 PTIVRSSIDVACSCTVVEFLTEMG-CRMDFEYISRGYMFRKGR---MKILVSKIFKMSQGKPSDSGVEPISQSYLVE--- 320 (858)
Q Consensus 248 ~~LVl~PtR~la~qva~~v~~e~g-~~~g~~~~~vG~~vr~~~---~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl--- 320 (858)
++||+.|.-.++.|+.+++.+.+| ..+.....+.+-..|... ......+|+|+|-.-++--..|.. .-+|
T Consensus 190 ~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvFaP~~~Lg---LIIvdEE 266 (665)
T PRK14873 190 GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVFAPVEDLG---LVAIWDD 266 (665)
T ss_pred eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEEeccCCCC---EEEEEcC
Confidence 589999999999999999988776 443222111221111111 122447899999877765222221 1122
Q ss_pred --EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccCHHHHHH
Q psy2470 321 --LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVDAEEICQ 367 (858)
Q Consensus 321 --R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~~~~~~~ 367 (858)
-+..+ .+.-.--.+++.... ....+..+|+-|||.+++.+..
T Consensus 267 hd~sykq---~~~p~yhaRdvA~~R--a~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 267 GDDLLAE---PRAPYPHAREVALLR--AHQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred CchhhcC---CCCCCccHHHHHHHH--HHHcCCcEEEECCCCCHHHHHH
Confidence 11110 000000112222000 1224678999999998886654
No 155
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.65 E-value=0.00018 Score=87.70 Aligned_cols=154 Identities=23% Similarity=0.266 Sum_probs=102.9
Q ss_pred eEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCeeccee------EEEecCCccchHHHHHHHHHHHHhhCCCCCEEE
Q psy2470 352 KLIISSATV--DAEEICQFYNISASSNATILSVKGHLYPVS------VYYSNDPVVNYVQGVVDTAIKIHESMPVGDILA 423 (858)
Q Consensus 352 q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~------~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLV 423 (858)
++-.|+.|. ...+|.+.++ -.++.||.. .|+. .+|. ....+..+.++.+..++.. +.+|||
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~------L~Vv~IPTn-rP~~R~D~~D~vy~--t~~eK~~Aii~ei~~~~~~--GrPVLV 633 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYK------LDVVVIPTN-RPIARKDKEDLVYK--TKREKYNAVIEEITELSEA--GRPVLV 633 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhC------CCEEECCCC-CCcceecCCCeEec--CHHHHHHHHHHHHHHHHHC--CCCEEE
Confidence 566788888 4556777665 567777643 2332 2222 1223345566666666654 568999
Q ss_pred EcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCC--------Cee
Q psy2470 424 FVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIP--------GIV 495 (858)
Q Consensus 424 Fl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp--------~V~ 495 (858)
-+.+.+.-+.+++.|.+. |++.-.|.+...+.|-.-|-++-.+| .|-||||.|.||-||. |==
T Consensus 634 GT~SVe~SE~lS~~L~~~-------gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~V~e~GGL 704 (1112)
T PRK12901 634 GTTSVEISELLSRMLKMR-------KIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPEVKAAGGL 704 (1112)
T ss_pred EeCcHHHHHHHHHHHHHc-------CCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchhhHHcCCC
Confidence 999999999999999976 66655666665555554444444444 5889999999999997 334
Q ss_pred EEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEE
Q psy2470 496 YVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVY 543 (858)
Q Consensus 496 ~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~ 543 (858)
|||-+.+ +.|+--=.|=.|||||.|. |.+-
T Consensus 705 ~VIgTer------------------heSrRID~QLrGRaGRQGDPGsS~ 735 (1112)
T PRK12901 705 AIIGTER------------------HESRRVDRQLRGRAGRQGDPGSSQ 735 (1112)
T ss_pred EEEEccC------------------CCcHHHHHHHhcccccCCCCCcce
Confidence 6666543 3344444689999999996 7643
No 156
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.52 E-value=0.00017 Score=72.63 Aligned_cols=140 Identities=13% Similarity=0.089 Sum_probs=75.1
Q ss_pred cchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeee
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRG 282 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG 282 (858)
.+-+.|+||||||.+....+.. .... .....+++++|++.++.|...++.+.+....... ..
T Consensus 26 ~~~i~~~~GsGKT~~~~~~~~~---------~~~~------~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~ 87 (201)
T smart00487 26 DVILAAPTGSGKTLAALLPALE---------ALKR------GKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKV---VG 87 (201)
T ss_pred cEEEECCCCCchhHHHHHHHHH---------Hhcc------cCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEE---EE
Confidence 4556799999999222111111 1110 1123589999999999999888866554321111 11
Q ss_pred EEEeccc-------eeecceeEEEeecCcccc-CCCcc-CCCcccEE-----EecCCCCCc-hhhhhHHHHHHHHhcccC
Q psy2470 283 YMFRKGR-------MKILVSKIFKMSQGKPSD-SGVEP-ISQSYLVE-----LSILAPGGQ-DVIGEDMKAFAEQLKPLK 347 (858)
Q Consensus 283 ~~vr~~~-------~~~~~t~I~v~TpGrLl~-~~~~~-~L~~~~vl-----R~l~~~~~~-d~ll~~lk~~~~~l~~~~ 347 (858)
. ..... ......+++++|++.+.+ ..... ...++.++ .++. . .+.. ....+. ...
T Consensus 88 ~-~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~----~~~~~~-~~~~~~----~~~ 157 (201)
T smart00487 88 L-YGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLL----DGGFGD-QLEKLL----KLL 157 (201)
T ss_pred E-eCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHh----cCCcHH-HHHHHH----HhC
Confidence 1 11111 111223999999999998 33322 33444443 2332 1 1111 222222 133
Q ss_pred CCCceEEEEeccc--CHHHHHHHhh
Q psy2470 348 RTQLKLIISSATV--DAEEICQFYN 370 (858)
Q Consensus 348 ~~~~q~il~SAT~--~~~~~~~~~~ 370 (858)
++..+++++|||. +...+...+.
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~~~ 182 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLELFL 182 (201)
T ss_pred CccceEEEEecCCchhHHHHHHHhc
Confidence 5678999999999 5565555444
No 157
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.29 E-value=0.00014 Score=69.80 Aligned_cols=97 Identities=14% Similarity=-0.029 Sum_probs=53.9
Q ss_pred cCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEecc-ceeecceeEEEeecCcccc-CCCccCCCcccEE----
Q psy2470 247 RPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKG-RMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE---- 320 (858)
Q Consensus 247 ~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~-~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl---- 320 (858)
.++|||.|||++|..+.+.+. |.. +.+..... .....+.-|-+||.+.+.+ +++...+.+|++|
T Consensus 34 ~rvLvL~PTRvva~em~~aL~---~~~-------~~~~t~~~~~~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DE 103 (148)
T PF07652_consen 34 LRVLVLAPTRVVAEEMYEALK---GLP-------VRFHTNARMRTHFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDE 103 (148)
T ss_dssp --EEEEESSHHHHHHHHHHTT---TSS-------EEEESTTSS----SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECT
T ss_pred CeEEEecccHHHHHHHHHHHh---cCC-------cccCceeeeccccCCCcccccccHHHHHHhcCcccccCccEEEEec
Confidence 358999999999877766552 222 22222211 1222446678899988887 5555567789988
Q ss_pred -EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccC
Q psy2470 321 -LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVD 361 (858)
Q Consensus 321 -R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~ 361 (858)
.-.| +.+=...++++... . ..+.++|+||||..
T Consensus 104 cH~~D--p~sIA~rg~l~~~~-----~-~g~~~~i~mTATPP 137 (148)
T PF07652_consen 104 CHFTD--PTSIAARGYLRELA-----E-SGEAKVIFMTATPP 137 (148)
T ss_dssp TT--S--HHHHHHHHHHHHHH-----H-TTS-EEEEEESS-T
T ss_pred cccCC--HHHHhhheeHHHhh-----h-ccCeeEEEEeCCCC
Confidence 2333 11112355666554 2 23468999999973
No 158
>KOG0951|consensus
Probab=96.98 E-value=0.017 Score=71.38 Aligned_cols=298 Identities=10% Similarity=0.074 Sum_probs=151.0
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+-|++||||| +...+..++ ++ +...+.=+.|..+.+...+...-+.++.-.|..+.-.|...
T Consensus 1164 vga~~gsgkt------------~~ae~a~l~-~~-----~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~ 1225 (1674)
T KOG0951|consen 1164 VGAPNGSGKT------------ACAELALLR-PD-----TIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGET 1225 (1674)
T ss_pred EecCCCCchh------------HHHHHHhcC-Cc-----cceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCcc
Confidence 3589999999 221122222 11 12235668898887766665554444444555522223222
Q ss_pred eccceeecceeEEEeecCccccCCCccCCCcccEE---EecCCCCC--chhhhhHHHHHHHHhcccCCCCceEEEEeccc
Q psy2470 286 RKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVE---LSILAPGG--QDVIGEDMKAFAEQLKPLKRTQLKLIISSATV 360 (858)
Q Consensus 286 r~~~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl---R~l~~~~~--~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~ 360 (858)
..+-+.....+|+++||-..--++ .....++.+. .++.+-.| -+.+.. .+.+..++ -++.+++..|..+
T Consensus 1226 s~~lkl~~~~~vii~tpe~~d~lq-~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~----~k~ir~v~ls~~l 1299 (1674)
T KOG0951|consen 1226 SLDLKLLQKGQVIISTPEQWDLLQ-SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQL----EKKIRVVALSSSL 1299 (1674)
T ss_pred ccchHHhhhcceEEechhHHHHHh-hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHH----HhheeEEEeehhh
Confidence 222222356899999998753332 1111111111 11110000 011112 22222222 2466788888777
Q ss_pred -CHHHHHHHhhcccCCCCcEEEe--cCeecceeEEEecCCccchHHH-------HHHHHHHHHhhCCCCCEEEEcCCHHH
Q psy2470 361 -DAEEICQFYNISASSNATILSV--KGHLYPVSVYYSNDPVVNYVQG-------VVDTAIKIHESMPVGDILAFVIGLEQ 430 (858)
Q Consensus 361 -~~~~~~~~~~~~~~~~~~~i~v--~g~~~~v~~~~~~~~~~~~~~~-------~~~~l~~i~~~~~~g~iLVFl~t~~~ 430 (858)
++..+. ++. ...++.. ..|..|.++..+......+... ....+.... ..+.+.+||+|+++.
T Consensus 1300 ana~d~i-g~s-----~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a--~~~k~~~vf~p~rk~ 1371 (1674)
T KOG0951|consen 1300 ANARDLI-GAS-----SSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHA--GNRKPAIVFLPTRKH 1371 (1674)
T ss_pred ccchhhc-ccc-----ccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHh--cCCCCeEEEeccchh
Confidence 666652 111 1222222 1233444444433222221111 111122111 236789999999999
Q ss_pred HHHHHHHHHHhcc-CC---------C-----CcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCee
Q psy2470 431 IEHIIGILKQYHN-QR---------E-----DLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIV 495 (858)
Q Consensus 431 i~~l~~~L~~~~~-~~---------~-----~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~ 495 (858)
+..++.-|-...- .. + ...++...=|-+++..++.-+=.-|..|.++|.|..-= --|+-... .
T Consensus 1372 ~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~-~ 1449 (1674)
T KOG0951|consen 1372 ARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKA-H 1449 (1674)
T ss_pred hhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccc-e
Confidence 9888766532110 00 0 01122211288999999888877788999998876432 44444322 2
Q ss_pred EEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 496 YVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 496 ~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
.||=.| ...||.+.. ...+-+.++..|+.|+|.| .|.|+-+.
T Consensus 1450 lVvvmg---t~~ydg~e~----~~~~y~i~~ll~m~G~a~~--~~k~vi~~ 1491 (1674)
T KOG0951|consen 1450 LVVVMG---TQYYDGKEH----SYEDYPIAELLQMVGLASG--AGKCVIMC 1491 (1674)
T ss_pred EEEEec---ceeeccccc----ccccCchhHHHHHhhhhcC--CccEEEEe
Confidence 333323 334774432 3356677899999999999 57777766
No 159
>KOG0949|consensus
Probab=96.88 E-value=0.0013 Score=78.82 Aligned_cols=78 Identities=26% Similarity=0.215 Sum_probs=64.6
Q ss_pred EEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhh
Q psy2470 452 ILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRA 531 (858)
Q Consensus 452 v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~ 531 (858)
+...|++|...+|..|.--|+.|...|++||...+-||+.|--++|.- .++|. .++-.|.|.+
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~--------------gDsLQ---L~plny~Qma 1027 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFA--------------GDSLQ---LDPLNYKQMA 1027 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEe--------------ccccc---cCchhHHhhh
Confidence 445699999999999988899999999999999999999998777764 12343 4567899999
Q ss_pred cccCCCCC---ceEEEeh
Q psy2470 532 GRAGRVRS---GHVYRKN 546 (858)
Q Consensus 532 GRaGR~g~---G~~~rL~ 546 (858)
|||||-|= |.+.-+-
T Consensus 1028 GRAGRRGFD~lGnV~Fmg 1045 (1330)
T KOG0949|consen 1028 GRAGRRGFDTLGNVVFMG 1045 (1330)
T ss_pred ccccccccccccceEEEe
Confidence 99999884 7776555
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.79 E-value=0.031 Score=67.35 Aligned_cols=104 Identities=14% Similarity=0.115 Sum_probs=68.1
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYV 497 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~V 497 (858)
+.+|-||.+|....+.+++..+.. +.+|+.+.|.-+..+ + +. =++.+|++=|.+..-|++++...+=
T Consensus 282 gknIcvfsSt~~~~~~v~~~~~~~-------~~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~itvG~Sf~~~HF~ 348 (824)
T PF02399_consen 282 GKNICVFSSTVSFAEIVARFCARF-------TKKVLVLNSTDKLED---V-ES--WKKYDVVIYTPVITVGLSFEEKHFD 348 (824)
T ss_pred CCcEEEEeChHHHHHHHHHHHHhc-------CCeEEEEcCCCCccc---c-cc--ccceeEEEEeceEEEEeccchhhce
Confidence 567889999999988888888766 667888888666552 2 22 2468999999999999998754321
Q ss_pred EcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 498 IDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 498 Id~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
-=+++.| ....| -+..+..|..||.-.-.....|--+
T Consensus 349 ~~f~yvk----~~~~g--------pd~~s~~Q~lgRvR~l~~~ei~v~~ 385 (824)
T PF02399_consen 349 SMFAYVK----PMSYG--------PDMVSVYQMLGRVRSLLDNEIYVYI 385 (824)
T ss_pred EEEEEec----CCCCC--------CcHHHHHHHHHHHHhhccCeEEEEE
Confidence 1111111 00111 2344578999998776665555444
No 161
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.66 E-value=0.03 Score=70.81 Aligned_cols=138 Identities=18% Similarity=0.231 Sum_probs=91.8
Q ss_pred chHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEE
Q psy2470 400 NYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIV 479 (858)
Q Consensus 400 ~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVl 479 (858)
+|.+...+.+..+... .+|.+|||+++.+..+.+++.|..... ..++.++. . +++...|.++++.|+++...||
T Consensus 735 ~~~~~la~~i~~l~~~-~~g~~LVLFtSy~~l~~v~~~l~~~~~---~~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iL 808 (928)
T PRK08074 735 EYIEEVAAYIAKIAKA-TKGRMLVLFTSYEMLKKTYYNLKNEEE---LEGYVLLA-Q-GVSSGSRARLTKQFQQFDKAIL 808 (928)
T ss_pred HHHHHHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHhhccc---ccCceEEe-c-CCCCCCHHHHHHHHHhcCCeEE
Confidence 4455666666666544 368999999999999999999975311 01233332 2 3434457788888988888999
Q ss_pred EecCcccccCCCCC--eeEEEcCCCccce----------eccCCCC---CCcceeeecCHhhHHHhhcccCCCCC--ceE
Q psy2470 480 IATNIAETSITIPG--IVYVIDPGFVKAR----------WFNPNTL---TNSLVVVPISKASAVQRAGRAGRVRS--GHV 542 (858)
Q Consensus 480 vATdvAergldIp~--V~~VId~g~~k~~----------~yd~~~g---~~~l~~~pis~~~~~qR~GRaGR~g~--G~~ 542 (858)
++|+-..-|||+|| .+.||=.++|-.. .|--+.| ...+. .|...-...|=+||.=|... |+.
T Consensus 809 lG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~-lP~A~~~lkQg~GRlIRs~~D~G~v 887 (928)
T PRK08074 809 LGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELS-LPQAVLRFKQGFGRLIRTETDRGTV 887 (928)
T ss_pred EecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhh-hHHHHHHHHhhhhhhcccCCceEEE
Confidence 99999999999997 4777766666421 1111112 22211 35555667899999988765 876
Q ss_pred EE
Q psy2470 543 YR 544 (858)
Q Consensus 543 ~r 544 (858)
+-
T Consensus 888 ~i 889 (928)
T PRK08074 888 FV 889 (928)
T ss_pred EE
Confidence 63
No 162
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.57 E-value=0.017 Score=70.67 Aligned_cols=134 Identities=16% Similarity=0.215 Sum_probs=87.2
Q ss_pred chHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCC----CCc
Q psy2470 400 NYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTP----RAM 475 (858)
Q Consensus 400 ~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~----~g~ 475 (858)
++.+...+.+..+.. . +|.+|||+++.+..+.+++.|.... +..++ .+|.. .+.++++.|+ .|.
T Consensus 518 ~~~~~~~~~i~~l~~-~-~gg~LVlFtSy~~l~~v~~~l~~~~------~~~ll-~Q~~~---~~~~ll~~f~~~~~~~~ 585 (697)
T PRK11747 518 AHTAEMAEFLPELLE-K-HKGSLVLFASRRQMQKVADLLPRDL------RLMLL-VQGDQ---PRQRLLEKHKKRVDEGE 585 (697)
T ss_pred HHHHHHHHHHHHHHh-c-CCCEEEEeCcHHHHHHHHHHHHHhc------CCcEE-EeCCc---hHHHHHHHHHHHhccCC
Confidence 455667777777776 3 5569999999999999999987431 23332 25543 3455664444 567
Q ss_pred EEEEEecCcccccCCCCC--eeEEEcCCCccceeccC----------CCCCCcce--eeecCHhhHHHhhcccCCCCC--
Q psy2470 476 RKIVIATNIAETSITIPG--IVYVIDPGFVKARWFNP----------NTLTNSLV--VVPISKASAVQRAGRAGRVRS-- 539 (858)
Q Consensus 476 ~kVlvATdvAergldIp~--V~~VId~g~~k~~~yd~----------~~g~~~l~--~~pis~~~~~qR~GRaGR~g~-- 539 (858)
..||++|+-..-|||+|| .+.||=.++|...--|| ..|-+.+. ..|.-.-...|=+||.=|...
T Consensus 586 ~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~ 665 (697)
T PRK11747 586 GSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDR 665 (697)
T ss_pred CeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCce
Confidence 789999999999999987 78887767765321111 11212221 124344457899999988654
Q ss_pred ceEEEe
Q psy2470 540 GHVYRK 545 (858)
Q Consensus 540 G~~~rL 545 (858)
|+.+-+
T Consensus 666 G~i~il 671 (697)
T PRK11747 666 GRVTIL 671 (697)
T ss_pred EEEEEE
Confidence 876643
No 163
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.47 E-value=0.03 Score=69.76 Aligned_cols=134 Identities=12% Similarity=0.113 Sum_probs=86.6
Q ss_pred chHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEE
Q psy2470 400 NYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIV 479 (858)
Q Consensus 400 ~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVl 479 (858)
+|.+...+.+..+. ..+|++|||+++.+..+.+++.|... ...++ ..|.-. .+.++++.|+++...||
T Consensus 631 ~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~-------~~~~l-~Qg~~~--~~~~l~~~F~~~~~~vL 698 (820)
T PRK07246 631 VYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW-------QVSHL-AQEKNG--TAYNIKKRFDRGEQQIL 698 (820)
T ss_pred HHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc-------CCcEE-EeCCCc--cHHHHHHHHHcCCCeEE
Confidence 45556666666655 24789999999999999999998643 22332 223211 24557788888888999
Q ss_pred EecCcccccCCCCC--eeEEEcCCCccceeccC----------CCCCCcce--eeecCHhhHHHhhcccCCCCC--ceEE
Q psy2470 480 IATNIAETSITIPG--IVYVIDPGFVKARWFNP----------NTLTNSLV--VVPISKASAVQRAGRAGRVRS--GHVY 543 (858)
Q Consensus 480 vATdvAergldIp~--V~~VId~g~~k~~~yd~----------~~g~~~l~--~~pis~~~~~qR~GRaGR~g~--G~~~ 543 (858)
++|+-.--|||+|+ ...||=.++|...-.|| +.|-+.+. ..|.-.-...|=+||.=|... |+.+
T Consensus 699 lG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ 778 (820)
T PRK07246 699 LGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVL 778 (820)
T ss_pred EecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 99999999999973 44444457664322121 11212111 135445668899999999864 8766
Q ss_pred Ee
Q psy2470 544 RK 545 (858)
Q Consensus 544 rL 545 (858)
-+
T Consensus 779 il 780 (820)
T PRK07246 779 IL 780 (820)
T ss_pred EE
Confidence 43
No 164
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.05 E-value=0.033 Score=68.59 Aligned_cols=191 Identities=13% Similarity=0.106 Sum_probs=106.2
Q ss_pred CceEEEEeccc-CHHHHHHHhhcccCCCCcEEEecCee-----------------cceeEEEecCCccchHHHHHHHHHH
Q psy2470 350 QLKLIISSATV-DAEEICQFYNISASSNATILSVKGHL-----------------YPVSVYYSNDPVVNYVQGVVDTAIK 411 (858)
Q Consensus 350 ~~q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~-----------------~~v~~~~~~~~~~~~~~~~~~~l~~ 411 (858)
-..+|++|||+ ..+.|.+.++.. .+.....+.. .+.+..|......++.....+.+..
T Consensus 441 ~~svil~SgTL~p~~~~~~~Lg~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~ 516 (705)
T TIGR00604 441 VRSVILASGTLSPLDAFPRNLGFN----PVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVE 516 (705)
T ss_pred cCEEEEecccCCcHHHHHHHhCCC----CccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHH
Confidence 35799999999 567787777631 1111110000 1111222222223455566666767
Q ss_pred HHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccC---CCCcceEEEeccCCCCHHHHHHhcCCCCC----CcEEEEEec--
Q psy2470 412 IHESMPVGDILAFVIGLEQIEHIIGILKQYHNQ---REDLKLLILPMHGSLPNNEQIKVFRPTPR----AMRKIVIAT-- 482 (858)
Q Consensus 412 i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~---~~~~~~~v~~LHg~l~q~~r~~v~~~f~~----g~~kVlvAT-- 482 (858)
+.... +|.+|||+|+....+.+.+.+.+.... .....+-+-+ .+ ..++.++++.|+. |.-.|++|+
T Consensus 517 ~~~~~-pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~---~~~~~~~l~~f~~~~~~~~gavL~av~g 591 (705)
T TIGR00604 517 FSKII-PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KD---AQETSDALERYKQAVSEGRGAVLLSVAG 591 (705)
T ss_pred HhhcC-CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CC---cchHHHHHHHHHHHHhcCCceEEEEecC
Confidence 76654 688999999999999999888742100 0001122222 11 1466778877743 445699999
Q ss_pred CcccccCCCCC--eeEEEcCCCccceeccCCC-------------CCCcceeeecCHhhHHHhhcccCCCCC--ceEEEe
Q psy2470 483 NIAETSITIPG--IVYVIDPGFVKARWFNPNT-------------LTNSLVVVPISKASAVQRAGRAGRVRS--GHVYRK 545 (858)
Q Consensus 483 dvAergldIp~--V~~VId~g~~k~~~yd~~~-------------g~~~l~~~pis~~~~~qR~GRaGR~g~--G~~~rL 545 (858)
.-.+=|||++| .+.||=.|+|-....|+.. +-..........-...|=+||.=|... |..+-+
T Consensus 592 Gk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iill 671 (705)
T TIGR00604 592 GKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLL 671 (705)
T ss_pred CcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEE
Confidence 77788999997 5777778988732222111 101000011122345688888888765 765543
Q ss_pred hhhH
Q psy2470 546 NFMY 549 (858)
Q Consensus 546 ~~~~ 549 (858)
=..|
T Consensus 672 D~R~ 675 (705)
T TIGR00604 672 DKRY 675 (705)
T ss_pred ehhc
Confidence 2333
No 165
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.86 E-value=0.13 Score=62.82 Aligned_cols=187 Identities=14% Similarity=0.143 Sum_probs=109.9
Q ss_pred CCceEEEEeccc-CHHHHHHHhhcccCCCCc-EEEecCeeccee---EEEecCC----c-cchHHHHHHHHHHHHhhCCC
Q psy2470 349 TQLKLIISSATV-DAEEICQFYNISASSNAT-ILSVKGHLYPVS---VYYSNDP----V-VNYVQGVVDTAIKIHESMPV 418 (858)
Q Consensus 349 ~~~q~il~SAT~-~~~~~~~~~~~~~~~~~~-~i~v~g~~~~v~---~~~~~~~----~-~~~~~~~~~~l~~i~~~~~~ 418 (858)
...-+|++|||+ ....|..+.+........ .+.++.. ++.. ..+.... . ..........+..+.... +
T Consensus 402 ~~~~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~sp-f~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 479 (654)
T COG1199 402 KVASVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSP-FNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKAS-P 479 (654)
T ss_pred hcCcEEEeeeeccCCCcHHHHHHHcCCccccceeccCCC-CChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhc-C
Confidence 345689999999 344555544422111111 2222221 1111 1222211 1 135556666677776654 5
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcE-EEEEecCcccccCCCCCe--e
Q psy2470 419 GDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMR-KIVIATNIAETSITIPGI--V 495 (858)
Q Consensus 419 g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~-kVlvATdvAergldIp~V--~ 495 (858)
|.+|||+|+.+..+.+++.+.... ....+..+|.-+.+ ..++.|+.+.- .++|+|.-..-|||+||= +
T Consensus 480 ~~~lvlF~Sy~~l~~~~~~~~~~~------~~~~v~~q~~~~~~---~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~ 550 (654)
T COG1199 480 GGVLVLFPSYEYLKRVAERLKDER------STLPVLTQGEDERE---ELLEKFKASGEGLILVGGGSFWEGVDFPGDALR 550 (654)
T ss_pred CCEEEEeccHHHHHHHHHHHhhcC------ccceeeecCCCcHH---HHHHHHHHhcCCeEEEeeccccCcccCCCCCee
Confidence 689999999999999999998541 11234456666555 44444444333 899999999999999974 4
Q ss_pred EEEcCCCccce----------eccCCCCC--CcceeeecCHhhHHHhhcccCCCCC--ceEEEeh
Q psy2470 496 YVIDPGFVKAR----------WFNPNTLT--NSLVVVPISKASAVQRAGRAGRVRS--GHVYRKN 546 (858)
Q Consensus 496 ~VId~g~~k~~----------~yd~~~g~--~~l~~~pis~~~~~qR~GRaGR~g~--G~~~rL~ 546 (858)
.||=.|+|-.. .|.-+.|. -.....|...-...|=+||.=|... |+++-+=
T Consensus 551 ~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD 615 (654)
T COG1199 551 LVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLD 615 (654)
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEec
Confidence 55544666431 23333221 1223356666778899999988644 8888654
No 166
>PF09637 Med18: Med18 protein; InterPro: IPR019095 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med18 is one subunit of the Mediator complex and a component of the head module that is involved in stimulating basal RNA polymerase II (PolII) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZM_F 2HZS_H 3RJ1_E 3C0T_A.
Probab=95.34 E-value=0.0017 Score=69.19 Aligned_cols=155 Identities=38% Similarity=0.654 Sum_probs=88.9
Q ss_pred HhhcccccchHHHHHHHhhhhhcccccCCCCcccccccchh---------ccCCC--ChhHHHHHHHhcCCCC--ccccc
Q psy2470 138 LLSSGSVLDSAVEILLHRLRGLCDNVDSGPETFHDHEMCFS---------IRGNQ--TQPLLLRVRRALDFPD--MPYQL 204 (858)
Q Consensus 138 l~~s~s~~~~~~~~~~~r~~~~~~~~~~~~~~f~~~e~~~~---------l~~~~--~~~~~~~~~~~~~~~~--~~~~~ 204 (858)
|.+.|++.+...+.+.++|+|+|++.. |+.|++++++|+ +.+.+ ..+...++++.+.... .++..
T Consensus 3 l~L~~sV~~~~~~~~l~~L~gl~~~~~--p~~~~~~~lvfkp~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 80 (250)
T PF09637_consen 3 LSLFGSVPDSDYEQLLSRLRGLCGMVQ--PEEFAERELVFKPNRSYKPSFLPGKNQQVQPLRMRLSQQLPKQSNGGQYYY 80 (250)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHCCC----EEEEEEEEEEEEE-TTS---SB-SSSBB-GGCSEEEEEEGGGCGHSSSTSC
T ss_pred EEEEEEEecchHHHHHHHHHHHhCCCC--ccceeeEEEEecCCCcccccccCCCcCCCcHHHHHHHHhhhhhcccccccc
Confidence 567799999999999999999999965 999999999999 44432 1233223333322110 01111
Q ss_pred hhccc---cCCcchhhhhhhhc----CcCcccccccccCCCCCCCCCCccCEEEccchHHH---HHHHHHHHHHHhCCcC
Q psy2470 205 RYIGQ---PEMGPLLLRVRRAL----DFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVA---CSCTVVEFLTEMGCRM 274 (858)
Q Consensus 205 ~~~a~---TGSGKT~~~~~~a~----~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~l---a~qva~~v~~e~g~~~ 274 (858)
.++.. ..+|=. ....+ ..-..+|.++|.+.|++|. ++.+.++.-.... .....-.+.+++|...
T Consensus 81 ~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~W~Lr~~d~Pe~~~---~~~v~~r~~~~~~i~~~~~~~~~fl~~lGy~~ 154 (250)
T PF09637_consen 81 QVVKDVSEDDFGIE---ASELFSGDDQSGSQPWTLRYSDIPEAGK---NRPVTVRTIIESTIVGTSGSLLSFLNELGYRF 154 (250)
T ss_dssp CCCTTHSSSTT-TT---GGG---------SSSEEEEEEE--GCCS---TTSSEEEEEEEEEEEESSSSHHHHHHHTTEEE
T ss_pred ccccccccccCCcc---ccccccccccccCCcEEEEEecCCCCCC---CCceeEEEEEEEEEecCCCCHHHHHHHcCCce
Confidence 11111 011100 00000 0015789999999999764 2223333222221 2334456779999999
Q ss_pred ccEeeeeeEEEeccceeecceeEEEe
Q psy2470 275 DFEYISRGYMFRKGRMKILVSKIFKM 300 (858)
Q Consensus 275 g~~~~~vG~~vr~~~~~~~~t~I~v~ 300 (858)
..+|+..||.....+....-.+|...
T Consensus 155 ~~Eyv~~G~~F~~g~i~I~l~ri~~~ 180 (250)
T PF09637_consen 155 DYEYVVEGYRFFKGDIVIELFRIFKV 180 (250)
T ss_dssp EEEEEEEEEEEEECCEEEEEEEEEEE
T ss_pred EEEEEEEEEEEEECCEEEEEEEEEec
Confidence 99999999998887766655666643
No 167
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.28 E-value=0.0088 Score=74.33 Aligned_cols=71 Identities=10% Similarity=-0.011 Sum_probs=46.9
Q ss_pred hHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHH-
Q psy2470 186 PLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVV- 264 (858)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~- 264 (858)
..+..+.+++.... .+-+.|+|||||| .||++|.+... ..++++|.+|||+|+.|+..
T Consensus 252 ~ma~~V~~~l~~~~---~~~~eA~tGtGKT-----~ayllp~l~~~-------------~~~~vvI~t~T~~Lq~Ql~~~ 310 (820)
T PRK07246 252 SFAKLVGEDFHDGP---ASFIEAQTGIGKT-----YGYLLPLLAQS-------------DQRQIIVSVPTKILQDQIMAE 310 (820)
T ss_pred HHHHHHHHHHhCCC---cEEEECCCCCcHH-----HHHHHHHHHhc-------------CCCcEEEEeCcHHHHHHHHHH
Confidence 44556778886443 3556799999999 77777744311 12468999999999999953
Q ss_pred ---HHHHHhCCcCccE
Q psy2470 265 ---EFLTEMGCRMDFE 277 (858)
Q Consensus 265 ---~v~~e~g~~~g~~ 277 (858)
.+++.++.++...
T Consensus 311 ~i~~l~~~~~~~~~~~ 326 (820)
T PRK07246 311 EVKAIQEVFHIDCHSL 326 (820)
T ss_pred HHHHHHHhcCCcEEEE
Confidence 3344455544433
No 168
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=94.35 E-value=0.023 Score=56.78 Aligned_cols=123 Identities=18% Similarity=0.180 Sum_probs=73.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC--cccccCCCCC-
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN--IAETSITIPG- 493 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd--vAergldIp~- 493 (858)
.+|.+|||+|+.+..+.+.+.+..... ..++.+..= ...++.++++.|+++.--|++|+. -..-|||+||
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~---~~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLE---EKGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E----ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcc---cccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCc
Confidence 468999999999999999998874311 012223221 355677888889889999999997 7777999996
Q ss_pred -eeEEEcCCCccceeccCCC----------C--CCcceeeecCHhhHHHhhcccCCCCC--ceEEEeh
Q psy2470 494 -IVYVIDPGFVKARWFNPNT----------L--TNSLVVVPISKASAVQRAGRAGRVRS--GHVYRKN 546 (858)
Q Consensus 494 -V~~VId~g~~k~~~yd~~~----------g--~~~l~~~pis~~~~~qR~GRaGR~g~--G~~~rL~ 546 (858)
.+.||=.|+|....-|+.. + .......|...-...|=+||.=|... |..+-+=
T Consensus 81 ~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD 148 (167)
T PF13307_consen 81 LLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLD 148 (167)
T ss_dssp SEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEES
T ss_pred hhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEc
Confidence 7778877887533222110 0 00111233344456788999988876 6666443
No 169
>PRK01172 ski2-like helicase; Provisional
Probab=94.33 E-value=0.019 Score=70.38 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=55.8
Q ss_pred ccccCChhHHHHHHHHcCCCCCCCC---CCC--CCCC---HHHHHHHHHHHHhcCccccCC--CcchHHHhhhhcCCCCc
Q psy2470 63 EMQRTELSSAVLQLKALGIHNILRF---SFP--SPPP---AQNLRVALELLYSLGAMDVNG--NLTKPVGETMAEMPLHP 132 (858)
Q Consensus 63 ei~r~~l~~~~L~lk~lg~~~~~~f---~~~--~~P~---~~~l~~a~~~L~~l~ald~~~--~lt~~lG~~ma~lp~~p 132 (858)
++.+.++-..+..-...+.+|+.+| .|+ +.++ .+.+++|++.|...|++++++ ..| ++|+.||.+|++|
T Consensus 403 ~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t-~lG~~~s~~~l~~ 481 (674)
T PRK01172 403 RKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRAT-RLGKLTSDLYIDP 481 (674)
T ss_pred ccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeEC-HHHHHHHHhCCCH
Confidence 4555554444444444455666665 444 5443 567999999999999998765 468 7999999999999
Q ss_pred hhhhHHhh
Q psy2470 133 IHAKVLLS 140 (858)
Q Consensus 133 ~~~~~l~~ 140 (858)
.-++.+..
T Consensus 482 ~t~~~~~~ 489 (674)
T PRK01172 482 ESALILKS 489 (674)
T ss_pred HHHHHHHH
Confidence 99998864
No 170
>KOG0392|consensus
Probab=94.20 E-value=0.28 Score=61.05 Aligned_cols=109 Identities=19% Similarity=0.252 Sum_probs=84.5
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCC-cEEEE-EecCcccccCCCCCeeE
Q psy2470 419 GDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRA-MRKIV-IATNIAETSITIPGIVY 496 (858)
Q Consensus 419 g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g-~~kVl-vATdvAergldIp~V~~ 496 (858)
.++||||-=+..++-+.+-|-+.. .+.+.-.-|-|..++.+|.++.++|-++ .+.|+ ++|-|..-|++.-|.+.
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~----mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADT 1416 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKY----MPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADT 1416 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhh----cCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCce
Confidence 479999999999999988887542 2466777899999999999999999888 67765 67999999999999999
Q ss_pred EEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 497 VIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 497 VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
||= ++|.-+ |..--+|+-|+-|-|...-=-+|||.
T Consensus 1417 VVF--------vEHDWN-------PMrDLQAMDRAHRIGQKrvVNVyRlI 1451 (1549)
T KOG0392|consen 1417 VVF--------VEHDWN-------PMRDLQAMDRAHRIGQKRVVNVYRLI 1451 (1549)
T ss_pred EEE--------EecCCC-------chhhHHHHHHHHhhcCceeeeeeeeh
Confidence 995 443322 33334566677776666556688887
No 171
>KOG0391|consensus
Probab=94.09 E-value=0.3 Score=60.26 Aligned_cols=107 Identities=18% Similarity=0.244 Sum_probs=87.0
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCc--EEEEEecCcccccCCCCCee
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAM--RKIVIATNIAETSITIPGIV 495 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~--~kVlvATdvAergldIp~V~ 495 (858)
+..+|||.--....+-+...|+.+ |+..+-|-|.-.-++|+..+++|-... ...|++|---..||++-+.+
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLnyH-------gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgAD 1348 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLNYH-------GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGAD 1348 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHhhc-------ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCc
Confidence 678999987777777776667665 999999999999999999999996543 45689999999999999999
Q ss_pred EEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 496 YVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 496 ~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
.||= ||...+ |.=-+++.-|.-|-|++..=+.|||.
T Consensus 1349 TVvF--------YDsDwN-------PtMDaQAQDrChRIGqtRDVHIYRLI 1384 (1958)
T KOG0391|consen 1349 TVVF--------YDSDWN-------PTMDAQAQDRCHRIGQTRDVHIYRLI 1384 (1958)
T ss_pred eEEE--------ecCCCC-------chhhhHHHHHHHhhcCccceEEEEee
Confidence 9996 553332 44456777888888888888999998
No 172
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=93.98 E-value=0.022 Score=68.11 Aligned_cols=48 Identities=6% Similarity=-0.062 Sum_probs=34.6
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHH
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEF 266 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v 266 (858)
+-+.|+|||||| .|+.+|.+.+... . ...+++|.+||++|+.|+++.+
T Consensus 19 lliEA~TGtGKT-----lAYLlpal~~~~~-----~-----~~~rvlIstpT~~Lq~Ql~~~l 66 (636)
T TIGR03117 19 GMLEASTGVGKT-----LAMIMAALTMLKE-----R-----PDQKIAIAVPTLALMGQLWSEL 66 (636)
T ss_pred EEEEcCCCCcHH-----HHHHHHHHHHHHh-----c-----cCceEEEECCcHHHHHHHHHHH
Confidence 445699999999 7777776554221 0 1235899999999999998744
No 173
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=93.69 E-value=0.11 Score=63.26 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 404 GVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 404 ~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
+.+..+...+.. +.+|||-..+.+.-+.+.+.|++. ++.-..|.+.-...|=..+-+.-..| -|-+|||
T Consensus 417 Aiv~~I~~~~~~--gqPvLvgT~sie~SE~ls~~L~~~-------~i~h~VLNAk~h~~EA~Iia~AG~~g--aVTiATN 485 (822)
T COG0653 417 AIVEDIKERHEK--GQPVLVGTVSIEKSELLSKLLRKA-------GIPHNVLNAKNHAREAEIIAQAGQPG--AVTIATN 485 (822)
T ss_pred HHHHHHHHHHhc--CCCEEEcCcceecchhHHHHHHhc-------CCCceeeccccHHHHHHHHhhcCCCC--ccccccc
Confidence 344444444443 678999999999999999999976 44444444433333333333333333 3679999
Q ss_pred cccccCCCC
Q psy2470 484 IAETSITIP 492 (858)
Q Consensus 484 vAergldIp 492 (858)
.|.||=||.
T Consensus 486 MAGRGTDIk 494 (822)
T COG0653 486 MAGRGTDIK 494 (822)
T ss_pred cccCCcccc
Confidence 999999986
No 174
>KOG0385|consensus
Probab=93.44 E-value=0.48 Score=56.46 Aligned_cols=108 Identities=20% Similarity=0.232 Sum_probs=81.0
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCC---CcEEEEEecCcccccCCCCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPR---AMRKIVIATNIAETSITIPG 493 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~---g~~kVlvATdvAergldIp~ 493 (858)
.+.+||||--=.. +-+.|....-.+ ++..+-+-|..+.++|..+++.|.. .+.-.+++|=-..-||++-.
T Consensus 486 ~GhRVLIFSQmt~----mLDILeDyc~~R---~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~a 558 (971)
T KOG0385|consen 486 QGHRVLIFSQMTR----MLDILEDYCMLR---GYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTA 558 (971)
T ss_pred CCCeEEEeHHHHH----HHHHHHHHHHhc---CceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccccccc
Confidence 3678999954333 334444332222 8999999999999999999988843 24567799999999999999
Q ss_pred eeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 494 IVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 494 V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
.+.||= ||..-+ |..--+|.+|+-|-|...+=++|||.
T Consensus 559 ADtVIl--------yDSDWN-------PQ~DLQAmDRaHRIGQ~K~V~V~RLi 596 (971)
T KOG0385|consen 559 ADTVIL--------YDSDWN-------PQVDLQAMDRAHRIGQKKPVVVYRLI 596 (971)
T ss_pred ccEEEE--------ecCCCC-------chhhhHHHHHHHhhCCcCceEEEEEe
Confidence 999994 332221 44456788999999999899999999
No 175
>PF13245 AAA_19: Part of AAA domain
Probab=92.83 E-value=0.045 Score=47.10 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=17.7
Q ss_pred cCEEEccchHHHHHHHHHHH
Q psy2470 247 RPTIVRSSIDVACSCTVVEF 266 (858)
Q Consensus 247 ~~~LVl~PtR~la~qva~~v 266 (858)
..+++++||+.++.++.+++
T Consensus 43 ~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 43 KRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CeEEEECCCHHHHHHHHHHH
Confidence 35899999999999998887
No 176
>KOG0387|consensus
Probab=92.68 E-value=0.73 Score=55.23 Aligned_cols=108 Identities=21% Similarity=0.280 Sum_probs=91.0
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCc--EEEEEecCcccccCCCCCee
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAM--RKIVIATNIAETSITIPGIV 495 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~--~kVlvATdvAergldIp~V~ 495 (858)
+..+|+|-.++...+-+...|... +++..+-+-|.-+...|....+.|-++. --.|++|-|..-|+++-+.+
T Consensus 546 g~rvllFsqs~~mLdilE~fL~~~------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAn 619 (923)
T KOG0387|consen 546 GDRVLLFSQSRQMLDILESFLRRA------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGAN 619 (923)
T ss_pred CCEEEEehhHHHHHHHHHHHHHhc------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCc
Confidence 568999999999999888888853 3899999999999999999999998664 33578899999999999998
Q ss_pred EEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 496 YVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 496 ~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
-||= |||.-+ |..-.+|.-|+-|-|....=++|||.
T Consensus 620 RVII--------fDPdWN-------PStD~QAreRawRiGQkkdV~VYRL~ 655 (923)
T KOG0387|consen 620 RVII--------FDPDWN-------PSTDNQARERAWRIGQKKDVVVYRLM 655 (923)
T ss_pred eEEE--------ECCCCC-------CccchHHHHHHHhhcCccceEEEEEe
Confidence 8886 555543 55667888899999998778899998
No 177
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=92.54 E-value=0.69 Score=55.66 Aligned_cols=89 Identities=15% Similarity=0.113 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCC----CcE
Q psy2470 401 YVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPR----AMR 476 (858)
Q Consensus 401 ~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~----g~~ 476 (858)
|.+...+.+..++.. ..|.+||-+++...++.+++.|+... .+.+ ...|+.+. +...++.|+. |..
T Consensus 454 ~~~~~~~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l------~~~~-l~qg~~~~--~~~l~~~f~~~~~~~~~ 523 (636)
T TIGR03117 454 WLENVSLSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGI------PAEI-VIQSEKNR--LASAEQQFLALYANGIQ 523 (636)
T ss_pred HHHHHHHHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhc------CCCE-EEeCCCcc--HHHHHHHHHHhhcCCCC
Confidence 444566666666654 36789999999999999999997431 2333 34565532 2334555554 578
Q ss_pred EEEEecCcccccCCC----------CCeeEEEc
Q psy2470 477 KIVIATNIAETSITI----------PGIVYVID 499 (858)
Q Consensus 477 kVlvATdvAergldI----------p~V~~VId 499 (858)
.||++|+-+-.|||+ +.++.||=
T Consensus 524 ~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI 556 (636)
T TIGR03117 524 PVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLII 556 (636)
T ss_pred cEEEeCCccccccccCCccCCCCCCCcccEEEE
Confidence 999999999999999 34777764
No 178
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=92.36 E-value=0.074 Score=66.88 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=37.6
Q ss_pred HHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHH
Q psy2470 190 RVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVE 265 (858)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~ 265 (858)
.+...+..+. .+-+-|+|||||| .|+++|.+.+.. . ..+++|.+||++|+.|+..+
T Consensus 256 ~i~~~~~~~~---~~~~eA~TG~GKT-----~ayLlp~~~~~~-------~-----~~~vvi~t~t~~Lq~Ql~~~ 311 (850)
T TIGR01407 256 LVLDQLTHSE---KSLIEAPTGTGKT-----LGYLLPALYYAI-------T-----EKPVVISTNTKVLQSQLLEK 311 (850)
T ss_pred HHHHHhccCC---cEEEECCCCCchh-----HHHHHHHHHHhc-------C-----CCeEEEEeCcHHHHHHHHHH
Confidence 3445554322 2345699999999 777777655321 0 12589999999999998664
No 179
>KOG2340|consensus
Probab=91.57 E-value=0.98 Score=51.83 Aligned_cols=112 Identities=12% Similarity=0.119 Sum_probs=75.9
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEecc--CCCCHHHHHHhcCCCCCCcEEEEEecCccc--ccCCCCCe
Q psy2470 419 GDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMH--GSLPNNEQIKVFRPTPRAMRKIVIATNIAE--TSITIPGI 494 (858)
Q Consensus 419 g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LH--g~l~q~~r~~v~~~f~~g~~kVlvATdvAe--rgldIp~V 494 (858)
..+||+.|+.-+--++-..+++. ++....+| +..++-.|.+- -|-.|..+|++=|.=|- |--+|.||
T Consensus 553 s~~LiyIPSYfDFVRvRNy~K~e-------~i~F~~i~EYssk~~vsRAR~--lF~qgr~~vlLyTER~hffrR~~ikGV 623 (698)
T KOG2340|consen 553 SGILIYIPSYFDFVRVRNYMKKE-------EISFVMINEYSSKSKVSRARE--LFFQGRKSVLLYTERAHFFRRYHIKGV 623 (698)
T ss_pred CceEEEecchhhHHHHHHHhhhh-------hcchHHHhhhhhHhhhhHHHH--HHHhcCceEEEEehhhhhhhhheecce
Confidence 45899999999999998888865 44444444 34334344433 36678899999997664 56789999
Q ss_pred eEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-----ceEEEehhhHhhhhh
Q psy2470 495 VYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-----GHVYRKNFMYNRLFI 554 (858)
Q Consensus 495 ~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-----G~~~rL~~~~~~l~~ 554 (858)
.-||=+++|..+.| .++.+-..+|+--.|. -.|-.||..|+.+.-
T Consensus 624 k~vVfYqpP~~P~F---------------YsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~L 673 (698)
T KOG2340|consen 624 KNVVFYQPPNNPHF---------------YSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRL 673 (698)
T ss_pred eeEEEecCCCCcHH---------------HHHHHhhhhhhhccCCccccceEEEEEeechhhHHH
Confidence 99999777666552 2455566777754442 456667766665443
No 180
>PRK05580 primosome assembly protein PriA; Validated
Probab=90.22 E-value=0.39 Score=58.78 Aligned_cols=74 Identities=16% Similarity=0.267 Sum_probs=62.2
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYV 497 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~V 497 (858)
++++||.+|+.+-+..+.+.+++.. +..+..+||+++..+|.+.+.+...|..+|||+|.-+-. +.+.++.+|
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f------g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~li 262 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF------GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLI 262 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh------CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEE
Confidence 5689999999999999999998642 567899999999999999998888899999999975432 556788776
Q ss_pred E
Q psy2470 498 I 498 (858)
Q Consensus 498 I 498 (858)
|
T Consensus 263 V 263 (679)
T PRK05580 263 I 263 (679)
T ss_pred E
Confidence 6
No 181
>KOG0347|consensus
Probab=89.96 E-value=0.61 Score=53.66 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=49.4
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 421 ILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 421 iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
.|||.||++-+..+.+.|..... .+++.+..+-|||++..|+++++.- -.|||||+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~---~t~i~v~si~GGLavqKQqRlL~~~----p~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAE---KTQIRVASITGGLAVQKQQRLLNQR----PDIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhcc---ccCeEEEEeechhHHHHHHHHHhcC----CCEEEecc
Confidence 79999999999999999986543 3599999999999999999999973 36999998
No 182
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=89.82 E-value=1.2 Score=56.16 Aligned_cols=105 Identities=21% Similarity=0.294 Sum_probs=86.2
Q ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCC--cEEEEEecCcccccCCCCCeeEE
Q psy2470 420 DILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRA--MRKIVIATNIAETSITIPGIVYV 497 (858)
Q Consensus 420 ~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g--~~kVlvATdvAergldIp~V~~V 497 (858)
++|||..-....+-+...++.. ++...-++|+++.+.|...++.|.++ ..-++++|-.+..|++.-.-++|
T Consensus 713 kvlifsq~t~~l~il~~~l~~~-------~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~v 785 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKAL-------GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTV 785 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhc-------CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceE
Confidence 7999999999999999988876 57789999999999999999999875 56677888899999999999999
Q ss_pred EcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 498 IDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 498 Id~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|- ||+.-+ |.-..+|..|+-|-|+..+=.+|++.
T Consensus 786 i~--------~d~~wn-------p~~~~Qa~dRa~RigQ~~~v~v~r~i 819 (866)
T COG0553 786 IL--------FDPWWN-------PAVELQAIDRAHRIGQKRPVKVYRLI 819 (866)
T ss_pred EE--------eccccC-------hHHHHHHHHHHHHhcCcceeEEEEee
Confidence 98 663322 44455667777777777777788887
No 183
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=89.69 E-value=0.6 Score=57.83 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=50.4
Q ss_pred cccccc-cccCCCCCccceeeEEeecccccc-cccchhcccccceeeccCHHHHhc-c-ccCCCcccccCChhHHHHHHH
Q psy2470 2 TEGILI-ENDDHDPSVEKYSVIMLDKVHERT-IFTDILMECSRKFSRLYTEASFSQ-L-NECTPPEMQRTELSSAVLQLK 77 (858)
Q Consensus 2 ~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~g~c~rLy~~~~~~~-~-~~~~~pei~r~~l~~~~L~lk 77 (858)
|.++|+ |.+..--.+...+.||+||||.=+ -+++.-+ -|||-+..=.. . .=+.-||-..+..+.+-=-+|
T Consensus 14 T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI------~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vmk 87 (814)
T TIGR00596 14 TSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFI------LRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKMR 87 (814)
T ss_pred echhhHhHHhcCCCCHHHccEEEEeecccccccccHHHH------HHHHHHhCCCcceEEecCCCcccccchHHHHHHHH
Confidence 455554 444555568889999999999865 3333322 25554432222 1 223458888877777777789
Q ss_pred HcCCCCCCCC
Q psy2470 78 ALGIHNILRF 87 (858)
Q Consensus 78 ~lg~~~~~~f 87 (858)
.|+|.++.-+
T Consensus 88 ~L~i~~v~l~ 97 (814)
T TIGR00596 88 NLFLRHVYLW 97 (814)
T ss_pred HhCcCeEEEe
Confidence 9999887543
No 184
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=89.56 E-value=1.1 Score=53.24 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=59.2
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----ccccc-CCCCCe
Q psy2470 421 ILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAETS-ITIPGI 494 (858)
Q Consensus 421 iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAerg-ldIp~V 494 (858)
+||++||++-+..+++.++..... ..++.+..++|+.+...|...++. | ..|||||+ ..+++ ++..+|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~--~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v 175 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKN--LGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGV 175 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhh--cCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhc
Confidence 999999999999999998865322 116789999999999999887775 5 89999998 45555 888899
Q ss_pred eEEE
Q psy2470 495 VYVI 498 (858)
Q Consensus 495 ~~VI 498 (858)
.++|
T Consensus 176 ~~lV 179 (513)
T COG0513 176 ETLV 179 (513)
T ss_pred CEEE
Confidence 9877
No 185
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.29 E-value=0.83 Score=53.95 Aligned_cols=75 Identities=19% Similarity=0.264 Sum_probs=62.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYV 497 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~V 497 (858)
++++||-+|+..-+..+++.|++.. +..+..+||+++..+|.+++....+|..+|||+|.-|-- +.++++.+|
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f------~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lI 97 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRF------GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLI 97 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh------CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEE
Confidence 5689999999999999999998542 456788999999999999998888899999999976543 456787776
Q ss_pred E-c
Q psy2470 498 I-D 499 (858)
Q Consensus 498 I-d 499 (858)
| |
T Consensus 98 IVD 100 (505)
T TIGR00595 98 IVD 100 (505)
T ss_pred EEE
Confidence 6 5
No 186
>KOG0390|consensus
Probab=89.14 E-value=2.9 Score=50.99 Aligned_cols=104 Identities=16% Similarity=0.252 Sum_probs=74.6
Q ss_pred EEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCC--CCcEEE-EEecCcccccCCCCCeeEEE
Q psy2470 422 LAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTP--RAMRKI-VIATNIAETSITIPGIVYVI 498 (858)
Q Consensus 422 LVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~--~g~~kV-lvATdvAergldIp~V~~VI 498 (858)
.|.+........+.+.+-+. .|+.++-|||.+++.+|.++++.|- .+.-+| +++|--..=||.+-|-+-||
T Consensus 598 ~v~Isny~~tldl~e~~~~~------~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRli 671 (776)
T KOG0390|consen 598 SVLISNYTQTLDLFEQLCRW------RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLI 671 (776)
T ss_pred EEEeccHHHHHHHHHHHHhh------cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEE
Confidence 34445555555555555443 1899999999999999999998883 334344 55566667899999999888
Q ss_pred cCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 499 DPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 499 d~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
= ||+.-+ |..-.+|+-|+-|-|...+=..|||.
T Consensus 672 l--------~D~dWN-------Pa~d~QAmaR~~RdGQKk~v~iYrLl 704 (776)
T KOG0390|consen 672 L--------FDPDWN-------PAVDQQAMARAWRDGQKKPVYIYRLL 704 (776)
T ss_pred E--------eCCCCC-------chhHHHHHHHhccCCCcceEEEEEee
Confidence 5 443322 55556788888888887778888988
No 187
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=88.87 E-value=0.9 Score=55.81 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=65.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-cccccCCCCCeeE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-IAETSITIPGIVY 496 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-vAergldIp~V~~ 496 (858)
..+++|-+||++=+...++.+++.... .++.+..+||+++..+|..+++...+|...|+|+|. .....+..+++.+
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~---~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~l 386 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEP---LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGL 386 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhh---cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccce
Confidence 568999999999999999888865321 268999999999999999999999999999999997 3344566788887
Q ss_pred EE-c
Q psy2470 497 VI-D 499 (858)
Q Consensus 497 VI-d 499 (858)
|| |
T Consensus 387 vVID 390 (681)
T PRK10917 387 VIID 390 (681)
T ss_pred EEEe
Confidence 77 5
No 188
>KOG0389|consensus
Probab=88.85 E-value=2.1 Score=51.45 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=88.5
Q ss_pred HHHHHHHHHhh--CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCc--EEEEE
Q psy2470 405 VVDTAIKIHES--MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAM--RKIVI 480 (858)
Q Consensus 405 ~~~~l~~i~~~--~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~--~kVlv 480 (858)
++..|..++.. ..+.+||+|--=..-.+-+...|... ++..+-|-|.-+-.+|+.++..|-..+ .-.|+
T Consensus 762 K~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l-------~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLL 834 (941)
T KOG0389|consen 762 KCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTL-------GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLL 834 (941)
T ss_pred hHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhc-------CceEEeecCCccchHHHHHHHhhccCCceEEEEE
Confidence 34444444432 23468999965555555555556655 899999999999999999999996543 45689
Q ss_pred ecCcccccCCCCCeeEEE--cCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 481 ATNIAETSITIPGIVYVI--DPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 481 ATdvAergldIp~V~~VI--d~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
+|--..-||++-..++|| |+. |||. .-.+|.-|+-|.|.+.+=.+|||.
T Consensus 835 STKAGG~GINLt~An~VIihD~d------FNP~-----------dD~QAEDRcHRvGQtkpVtV~rLI 885 (941)
T KOG0389|consen 835 STKAGGFGINLTCANTVIIHDID------FNPY-----------DDKQAEDRCHRVGQTKPVTVYRLI 885 (941)
T ss_pred eeccCcceecccccceEEEeecC------CCCc-----------ccchhHHHHHhhCCcceeEEEEEE
Confidence 999999999999999998 433 5543 335677899999999999999998
No 189
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=88.60 E-value=0.23 Score=49.39 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=35.2
Q ss_pred HHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHH
Q psy2470 189 LRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEF 266 (858)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v 266 (858)
.++.+.+....-+-..-+.|+||||||...+..+..+. . .+++++|+..++.|..+.+
T Consensus 13 ~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-----------------~---~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 13 ARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-----------------R---KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp HHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-----------------C---EEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-----------------c---ceeEecCHHHHHHHHHHHH
Confidence 44555554331123444569999999933332111111 0 4788999999999998877
No 190
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=88.25 E-value=0.95 Score=55.85 Aligned_cols=77 Identities=16% Similarity=0.254 Sum_probs=59.9
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 406 VDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 406 ~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
.-+++.+.....++++++-+||..=+..+++.|++.....+..+..++ +||.|+.++++.+++++.+|..+|+|+|+
T Consensus 113 fg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs 189 (1187)
T COG1110 113 FGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTS 189 (1187)
T ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeH
Confidence 344455554445678999999999999999999865322222344555 99999999999999999999999999996
No 191
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=85.81 E-value=0.34 Score=61.46 Aligned_cols=69 Identities=12% Similarity=0.071 Sum_probs=46.6
Q ss_pred hHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHH
Q psy2470 186 PLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVE 265 (858)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~ 265 (858)
..+..+.+++.... .+-+-|+||+||| .|+++|.+.+... ...+++|.++|..|..|+..+
T Consensus 264 ~m~~~v~~~l~~~~---~~~iEA~TGtGKT-----laYLlpa~~~a~~-----------~~~~vvIsT~T~~LQ~Ql~~k 324 (928)
T PRK08074 264 EMMKEVYTALRDSE---HALIEAGTGTGKS-----LAYLLPAAYFAKK-----------KEEPVVISTYTIQLQQQLLEK 324 (928)
T ss_pred HHHHHHHHHHhcCC---CEEEECCCCCchh-----HHHHHHHHHHhhc-----------cCCeEEEEcCCHHHHHHHHHh
Confidence 45566777876443 3446799999999 7777776653211 123589999999999998763
Q ss_pred ----HHHHhCCc
Q psy2470 266 ----FLTEMGCR 273 (858)
Q Consensus 266 ----v~~e~g~~ 273 (858)
+.+.++..
T Consensus 325 DiP~L~~~~~~~ 336 (928)
T PRK08074 325 DIPLLQKIFPFP 336 (928)
T ss_pred hHHHHHHHcCCC
Confidence 44445543
No 192
>KOG0388|consensus
Probab=85.71 E-value=4.3 Score=48.22 Aligned_cols=108 Identities=21% Similarity=0.241 Sum_probs=88.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCC-cEEEEEecCcccccCCCCCee
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRA-MRKIVIATNIAETSITIPGIV 495 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g-~~kVlvATdvAergldIp~V~ 495 (858)
++..+|+|+.-...++.+.+.|... ++.-+-|-|.....+|..+...|... ..-.|++|--..-||++-..+
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr-------~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAAD 1115 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYR-------GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAAD 1115 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhh-------ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccc
Confidence 3678999998888888888888866 88899999999999999999888654 455678999999999999999
Q ss_pred EEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 496 YVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 496 ~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
.||= ||..-+ |.--.++.-|+-|-|.+..-.+|||.
T Consensus 1116 TViF--------YdSDWN-------PT~D~QAMDRAHRLGQTrdvtvyrl~ 1151 (1185)
T KOG0388|consen 1116 TVIF--------YDSDWN-------PTADQQAMDRAHRLGQTRDVTVYRLI 1151 (1185)
T ss_pred eEEE--------ecCCCC-------cchhhHHHHHHHhccCccceeeeeec
Confidence 9996 443322 44445677888888888888999998
No 193
>PRK14873 primosome assembly protein PriA; Provisional
Probab=85.70 E-value=1.6 Score=53.12 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=61.4
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYV 497 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~V 497 (858)
++++||-+|....+..+.+.|+.... +-.+..+||+++..+|.+.+....+|+.+|||-|=-|-- .-+++...|
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~-----~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-aP~~~LgLI 261 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLG-----AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-APVEDLGLV 261 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcC-----CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-eccCCCCEE
Confidence 56899999999999999999986521 246888999999999999999999999999999854432 345666666
Q ss_pred E
Q psy2470 498 I 498 (858)
Q Consensus 498 I 498 (858)
|
T Consensus 262 I 262 (665)
T PRK14873 262 A 262 (665)
T ss_pred E
Confidence 5
No 194
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=85.21 E-value=1.8 Score=54.63 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=64.8
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-cccccCCCCCeeE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-IAETSITIPGIVY 496 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-vAergldIp~V~~ 496 (858)
..+++|.+||..-++..++.+++.... -++.+..++|..+..++.++++..++|+..|||+|. +....+...++.+
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~---~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~l 576 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFAN---FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGL 576 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhcc---CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCE
Confidence 468999999999999999988854221 267888999999999999999988899999999998 4445577888887
Q ss_pred EE-c
Q psy2470 497 VI-D 499 (858)
Q Consensus 497 VI-d 499 (858)
|| |
T Consensus 577 lVID 580 (926)
T TIGR00580 577 LIID 580 (926)
T ss_pred EEee
Confidence 76 5
No 195
>KOG0384|consensus
Probab=84.64 E-value=4.8 Score=50.80 Aligned_cols=106 Identities=19% Similarity=0.199 Sum_probs=85.2
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCC---CCcEEEEEecCcccccCCCCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTP---RAMRKIVIATNIAETSITIPG 493 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~---~g~~kVlvATdvAergldIp~ 493 (858)
.+.+||||---..-.+-|++.|... +|..--|-|++..+.|+.+++.|. +...-.|+||=-..-||++-.
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r-------~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLat 770 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLR-------GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLAT 770 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHc-------CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccc
Confidence 3578999977777777788888755 788888999999999999988884 345788999999999999998
Q ss_pred eeEEE--cCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 494 IVYVI--DPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 494 V~~VI--d~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
.+.|| |++ |||.+. -+|.-|+-|-|....=.+|||.
T Consensus 771 ADTVIIFDSD------WNPQND-----------LQAqARaHRIGQkk~VnVYRLV 808 (1373)
T KOG0384|consen 771 ADTVIIFDSD------WNPQND-----------LQAQARAHRIGQKKHVNVYRLV 808 (1373)
T ss_pred cceEEEeCCC------CCcchH-----------HHHHHHHHhhcccceEEEEEEe
Confidence 88888 554 665544 4566678887877778899999
No 196
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=83.90 E-value=0.42 Score=58.70 Aligned_cols=61 Identities=10% Similarity=0.027 Sum_probs=40.5
Q ss_pred HHHHHHhcCCCC--ccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHH
Q psy2470 188 LLRVRRALDFPD--MPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVV 264 (858)
Q Consensus 188 ~~~~~~~~~~~~--~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~ 264 (858)
+..+.++|.... .+-.+-+-|+||+||| .|+++|.+.|... ...+++|-+.|..|-.|+..
T Consensus 34 ~~~V~~al~~~~~~~~~~lviEAgTGtGKT-----laYLlPai~~A~~-----------~~k~vVIST~T~~LQeQL~~ 96 (697)
T PRK11747 34 IAEVAKTLAGEYLKDGRILVIEAGTGVGKT-----LSYLLAGIPIARA-----------EKKKLVISTATVALQEQLVS 96 (697)
T ss_pred HHHHHHHHhcccccccceEEEECCCCcchh-----HHHHHHHHHHHHH-----------cCCeEEEEcCCHHHHHHHHh
Confidence 345666665421 1123446699999999 8888887765321 11247888999999999964
No 197
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=82.91 E-value=1.8 Score=49.92 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=36.1
Q ss_pred cccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCc
Q psy2470 201 PYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCR 273 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~ 273 (858)
.+|.- .|-|||||| |.+ .+ .+. +..+++||++|..-||-|++.++-+-+..+
T Consensus 33 ~~QtL-LGvTGSGKT-------fT~---An---VI~-------~~~rPtLV~AhNKTLAaQLy~Efk~fFP~N 84 (663)
T COG0556 33 KHQTL-LGVTGSGKT-------FTM---AN---VIA-------KVQRPTLVLAHNKTLAAQLYSEFKEFFPEN 84 (663)
T ss_pred eeeEE-eeeccCCch-------hHH---HH---HHH-------HhCCCeEEEecchhHHHHHHHHHHHhCcCc
Confidence 44544 799999999 221 11 111 234578999999999999999986655544
No 198
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=82.84 E-value=6 Score=40.21 Aligned_cols=75 Identities=16% Similarity=0.253 Sum_probs=55.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----cc-cccCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IA-ETSIT 490 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vA-ergld 490 (858)
..+.+||.+|+++-+...++.++..... .+..+..+||+.+..++.+.++ +...|+|+|+ .. ..-.+
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~ 140 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKH---TNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLD 140 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcc---CCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCC
Confidence 4567999999999999988888755322 3778889999999888776665 3467999995 22 22366
Q ss_pred CCCeeEEE
Q psy2470 491 IPGIVYVI 498 (858)
Q Consensus 491 Ip~V~~VI 498 (858)
++++.++|
T Consensus 141 ~~~l~~lI 148 (203)
T cd00268 141 LSKVKYLV 148 (203)
T ss_pred hhhCCEEE
Confidence 77888776
No 199
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=82.45 E-value=4 Score=49.58 Aligned_cols=77 Identities=13% Similarity=0.229 Sum_probs=58.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----cccc-cCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAET-SIT 490 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAer-gld 490 (858)
...++||.+||++-+..+++.+...... .+++.+..+||+.+.+.+.+.++. ...|||+|+ ...+ .++
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~--~~~i~v~~~~gG~~~~~q~~~l~~----~~~IVVgTPgrl~d~l~r~~l~ 146 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKH--MRGVNVVALYGGQRYDVQLRALRQ----GPQIVVGTPGRLLDHLKRGTLD 146 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhh--cCCceEEEEECCcCHHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcc
Confidence 3458999999999999998888754211 247889999999998888777653 357999995 3334 377
Q ss_pred CCCeeEEE-c
Q psy2470 491 IPGIVYVI-D 499 (858)
Q Consensus 491 Ip~V~~VI-d 499 (858)
+.++.+|| |
T Consensus 147 l~~l~~lVlD 156 (629)
T PRK11634 147 LSKLSGLVLD 156 (629)
T ss_pred hhhceEEEec
Confidence 88998776 5
No 200
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=81.68 E-value=1.9 Score=44.24 Aligned_cols=55 Identities=11% Similarity=0.254 Sum_probs=30.6
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCc
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCR 273 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~ 273 (858)
+-.+|+||+||| +.+..+.+.+..- +. +.-.+..-.-|..|..-.+.+++.+|..
T Consensus 4 i~lvGptGvGKT-------Tt~aKLAa~~~~~-------~~-~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 4 IALVGPTGVGKT-------TTIAKLAARLKLK-------GK-KVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp EEEEESTTSSHH-------HHHHHHHHHHHHT-------T---EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred EEEECCCCCchH-------hHHHHHHHHHhhc-------cc-cceeecCCCCCccHHHHHHHHHHHhccc
Confidence 445799999999 3333333222111 11 1112334446777766668888888854
No 201
>KOG1000|consensus
Probab=80.97 E-value=5.1 Score=45.92 Aligned_cols=80 Identities=15% Similarity=0.196 Sum_probs=63.5
Q ss_pred hCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCC-cEE-EEEecCcccccCCCC
Q psy2470 415 SMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRA-MRK-IVIATNIAETSITIP 492 (858)
Q Consensus 415 ~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g-~~k-VlvATdvAergldIp 492 (858)
..++.+.+||+--..-.+.+...+.+. ++..+-+-|..+..+|...-+.|... .++ -|++---|..|||..
T Consensus 489 d~~~~KflVFaHH~~vLd~Iq~~~~~r-------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~t 561 (689)
T KOG1000|consen 489 DAPPRKFLVFAHHQIVLDTIQVEVNKR-------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLT 561 (689)
T ss_pred cCCCceEEEEehhHHHHHHHHHHHHHc-------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeee
Confidence 345678999999999999998888876 67778889999999999998888533 333 355556688999999
Q ss_pred CeeEEEcCC
Q psy2470 493 GIVYVIDPG 501 (858)
Q Consensus 493 ~V~~VId~g 501 (858)
.-+.||=..
T Consensus 562 Aa~~VVFaE 570 (689)
T KOG1000|consen 562 AASVVVFAE 570 (689)
T ss_pred ccceEEEEE
Confidence 999998633
No 202
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=80.83 E-value=4.9 Score=46.88 Aligned_cols=75 Identities=12% Similarity=0.201 Sum_probs=57.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----cccc-cCCC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAET-SITI 491 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAer-gldI 491 (858)
..++||.+||++-+..+++.++..... .+++.+..++|+.+.+.+...++ +...|+|+|+ ...+ .+++
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~--~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l 145 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARF--IPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDL 145 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhh--CCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccH
Confidence 347999999999999998888754211 23688999999999998877776 3467999994 4443 5788
Q ss_pred CCeeEEE
Q psy2470 492 PGIVYVI 498 (858)
Q Consensus 492 p~V~~VI 498 (858)
.++++||
T Consensus 146 ~~l~~lV 152 (460)
T PRK11776 146 DALNTLV 152 (460)
T ss_pred HHCCEEE
Confidence 8888877
No 203
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=79.82 E-value=0.93 Score=49.54 Aligned_cols=66 Identities=14% Similarity=0.028 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHH
Q psy2470 187 LLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEF 266 (858)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v 266 (858)
.+..+.+.+..+. .+-+-|+|||||| +|+.+|.+.|..... . ......+++.++|..+..|+...+
T Consensus 16 ~m~~v~~~~~~~~---~~~~eapTGtGKT-----l~~L~~al~~~~~~~---~---~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 16 FMEELKRVLDRGK---IGILESPTGTGKT-----LSLLCLTLTWLRSFP---E---RIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred HHHHHHHHHHcCC---cEEEECCCCcchh-----HHHHHHHHHHHHhCc---c---cccccceeEEeccHHHHHHHHHHH
Confidence 4445556665443 3445699999999 666666665543211 0 001124688888888776665444
No 204
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=79.82 E-value=0.93 Score=49.54 Aligned_cols=66 Identities=14% Similarity=0.028 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHH
Q psy2470 187 LLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEF 266 (858)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v 266 (858)
.+..+.+.+..+. .+-+-|+|||||| +|+.+|.+.|..... . ......+++.++|..+..|+...+
T Consensus 16 ~m~~v~~~~~~~~---~~~~eapTGtGKT-----l~~L~~al~~~~~~~---~---~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 16 FMEELKRVLDRGK---IGILESPTGTGKT-----LSLLCLTLTWLRSFP---E---RIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred HHHHHHHHHHcCC---cEEEECCCCcchh-----HHHHHHHHHHHHhCc---c---cccccceeEEeccHHHHHHHHHHH
Confidence 4445556665443 3445699999999 666666665543211 0 001124688888888776665444
No 205
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=79.43 E-value=4.1 Score=49.66 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=64.1
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCccc-ccCCCCCeeE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAE-TSITIPGIVY 496 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAe-rgldIp~V~~ 496 (858)
..+++|-+||+.=++..++.+++.... -++.+..+||+++..+|..+++...+|...|||+|.-.= ..+...++.+
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~---~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~l 360 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAP---LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLAL 360 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcc---cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccce
Confidence 568999999999999999888865321 268999999999999999999999999999999997443 2356677777
Q ss_pred EE-c
Q psy2470 497 VI-D 499 (858)
Q Consensus 497 VI-d 499 (858)
|| |
T Consensus 361 vVID 364 (630)
T TIGR00643 361 VIID 364 (630)
T ss_pred EEEe
Confidence 76 5
No 206
>PRK10689 transcription-repair coupling factor; Provisional
Probab=79.40 E-value=2.5 Score=54.78 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=63.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-cccccCCCCCeeE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-IAETSITIPGIVY 496 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-vAergldIp~V~~ 496 (858)
..+++|-+||++-+...++.+++... ..++.+..++|..+.++|.++++..++|...|||+|. +....+...++.+
T Consensus 649 g~qvlvLvPT~eLA~Q~~~~f~~~~~---~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~l 725 (1147)
T PRK10689 649 HKQVAVLVPTTLLAQQHYDNFRDRFA---NWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGL 725 (1147)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhc---cCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCE
Confidence 57899999999999999988875321 1157788899999999999999888888899999996 4444566778876
Q ss_pred EE-c
Q psy2470 497 VI-D 499 (858)
Q Consensus 497 VI-d 499 (858)
|| |
T Consensus 726 LVID 729 (1147)
T PRK10689 726 LIVD 729 (1147)
T ss_pred EEEe
Confidence 66 6
No 207
>KOG1803|consensus
Probab=78.57 E-value=0.99 Score=52.75 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=30.8
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHH
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFL 267 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~ 267 (858)
|.||+||||| +.+-.+.. |.- +...++||+.||.++...+.+|+.
T Consensus 206 I~GPPGTGKT-------~TlvEiI~------qlv----k~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 206 IHGPPGTGKT-------RTLVEIIS------QLV----KQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred eeCCCCCCce-------eeHHHHHH------HHH----HcCCeEEEEcCchHHHHHHHHHhc
Confidence 4599999999 33332221 111 122368999999999999988875
No 208
>KOG1002|consensus
Probab=78.38 E-value=6.5 Score=44.97 Aligned_cols=122 Identities=15% Similarity=0.194 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCc-EEE-EE
Q psy2470 403 QGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAM-RKI-VI 480 (858)
Q Consensus 403 ~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~-~kV-lv 480 (858)
++.++.+..+-.....-+.|||-.=..-.+.+.-.|.+. |+.++.|-|+|++..|...++.|++.- .+| |+
T Consensus 623 EAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~ka-------GfscVkL~GsMs~~ardatik~F~nd~~c~vfLv 695 (791)
T KOG1002|consen 623 EALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKA-------GFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLV 695 (791)
T ss_pred HHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhcc-------CceEEEeccCCChHHHHHHHHHhccCCCeEEEEE
Confidence 344444444444444456789976666667676777766 999999999999999999999998753 343 44
Q ss_pred ecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 481 ATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 481 ATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
+---..-.+++-..++|.-. .+.|+|.. .-++.-|+-|-|...|=.++|++
T Consensus 696 SLkAGGVALNLteASqVFmm----DPWWNpaV-----------e~Qa~DRiHRIGQ~rPvkvvrf~ 746 (791)
T KOG1002|consen 696 SLKAGGVALNLTEASQVFMM----DPWWNPAV-----------EWQAQDRIHRIGQYRPVKVVRFC 746 (791)
T ss_pred EeccCceEeeechhceeEee----cccccHHH-----------HhhhhhhHHhhcCccceeEEEee
Confidence 43322223444445555531 13455332 22455577777888888888877
No 209
>KOG0331|consensus
Probab=78.34 E-value=7.6 Score=45.43 Aligned_cols=72 Identities=18% Similarity=0.308 Sum_probs=58.5
Q ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----ccccc-CCCCC
Q psy2470 420 DILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAETS-ITIPG 493 (858)
Q Consensus 420 ~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAerg-ldIp~ 493 (858)
.+||-+||++-+..+.+...+... ..++++.+++|+.+...|.+-+++ -..|+|||+ ..+.| ++...
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~---~~~~~~~cvyGG~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~~l~~ 239 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGK---SLRLRSTCVYGGAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSLNLSR 239 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcC---CCCccEEEEeCCCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCccccc
Confidence 489999999999988888876532 236779999999999999888874 268999996 45555 77889
Q ss_pred eeEEE
Q psy2470 494 IVYVI 498 (858)
Q Consensus 494 V~~VI 498 (858)
|+|||
T Consensus 240 v~ylV 244 (519)
T KOG0331|consen 240 VTYLV 244 (519)
T ss_pred eeEEE
Confidence 99998
No 210
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=77.31 E-value=5.9 Score=45.83 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=56.2
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC------cccccCCC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN------IAETSITI 491 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd------vAergldI 491 (858)
...+||.+||++-+..+++.++..... .++.+..++|+.+...+..++.. ...|||+|+ +....++.
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~---~~~~v~~~~gg~~~~~~~~~l~~----~~~IlV~Tp~rl~~~~~~~~~~~ 145 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKH---THLDIATITGGVAYMNHAEVFSE----NQDIVVATPGRLLQYIKEENFDC 145 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHcc---CCcEEEEEECCCCHHHHHHHhcC----CCCEEEEChHHHHHHHHcCCcCc
Confidence 357999999999999888887754322 37889999999999988877753 357999997 22345667
Q ss_pred CCeeEEE
Q psy2470 492 PGIVYVI 498 (858)
Q Consensus 492 p~V~~VI 498 (858)
.+|.+||
T Consensus 146 ~~v~~lV 152 (434)
T PRK11192 146 RAVETLI 152 (434)
T ss_pred ccCCEEE
Confidence 7787776
No 211
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=77.00 E-value=2.7 Score=47.79 Aligned_cols=15 Identities=13% Similarity=0.242 Sum_probs=12.4
Q ss_pred cccchhccccCCcch
Q psy2470 201 PYQLRYIGQPEMGPL 215 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT 215 (858)
|..+-.+|+||+|||
T Consensus 174 ~~vi~lvGptGvGKT 188 (388)
T PRK12723 174 KRVFILVGPTGVGKT 188 (388)
T ss_pred CeEEEEECCCCCCHH
Confidence 445667899999999
No 212
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=76.76 E-value=3.3 Score=50.57 Aligned_cols=74 Identities=19% Similarity=0.294 Sum_probs=61.5
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYV 497 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~V 497 (858)
+.++||-+|-......+.+.++... +.++..+||+|++.+|..+..+.++|+.+|||-|=-|= =.-+++...+
T Consensus 245 GkqvLvLVPEI~Ltpq~~~rf~~rF------g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-F~Pf~~LGLI 317 (730)
T COG1198 245 GKQVLVLVPEIALTPQLLARFKARF------GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-FLPFKNLGLI 317 (730)
T ss_pred CCEEEEEeccccchHHHHHHHHHHh------CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-cCchhhccEE
Confidence 5789999999999998888888542 67899999999999999999999999999999874322 2346688777
Q ss_pred E
Q psy2470 498 I 498 (858)
Q Consensus 498 I 498 (858)
|
T Consensus 318 I 318 (730)
T COG1198 318 I 318 (730)
T ss_pred E
Confidence 6
No 213
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=76.71 E-value=4 Score=53.08 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=51.0
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
..++||.+||++-+..+++.++......+.....+..+||+++.++|...++.+++|...|||+|+
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp 186 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTT 186 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 568999999999999999988865321100112244689999999998888888888889999997
No 214
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=76.60 E-value=0.98 Score=49.19 Aligned_cols=24 Identities=8% Similarity=-0.042 Sum_probs=20.4
Q ss_pred CEEEccchHHHHHHHHHHHHHHhC
Q psy2470 248 PTIVRSSIDVACSCTVVEFLTEMG 271 (858)
Q Consensus 248 ~~LVl~PtR~la~qva~~v~~e~g 271 (858)
.+|+++.|+.+|..+.+++...++
T Consensus 47 ~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 47 RILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp GEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HheecccCHHHHHHHHHHHHHhcC
Confidence 589999999999999998876544
No 215
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=75.94 E-value=1 Score=46.53 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=19.0
Q ss_pred ccCEEEccchHHHHHHHHHHHHH
Q psy2470 246 ARPTIVRSSIDVACSCTVVEFLT 268 (858)
Q Consensus 246 ~~~~LVl~PtR~la~qva~~v~~ 268 (858)
...+|+.+|+-.++.++.+++.+
T Consensus 53 ~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 53 GKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp SS-EEEEESSHHHHHHHHHHHHC
T ss_pred cccceeecCCchhHHHHHHHHHh
Confidence 34689999999999999998865
No 216
>PRK14701 reverse gyrase; Provisional
Probab=74.96 E-value=4.8 Score=53.88 Aligned_cols=65 Identities=9% Similarity=0.171 Sum_probs=53.8
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
..++||.+||++=+...++.++...... ..+..+..+||+++.+++..+++.+++|..+|||+|+
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~-~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TP 186 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKA-NLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTA 186 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhc-CCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECC
Confidence 4589999999999999999988642210 1257789999999999999988888889899999997
No 217
>KOG0349|consensus
Probab=73.63 E-value=1 Score=50.25 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=41.9
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 419 GDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 419 g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
...+|--|+++-+|...+.+++..---..|.++.+.+-|+.-.++|.+.++. | ..|+|-|+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~---g-~~ivvGtp 347 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKD---G-THIVVGTP 347 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhc---C-ceeeecCc
Confidence 3578888999999999887774421122456666677788777888777653 3 46777775
No 218
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=73.44 E-value=9.1 Score=44.66 Aligned_cols=73 Identities=18% Similarity=0.258 Sum_probs=55.9
Q ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC------cccccCCCCC
Q psy2470 420 DILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN------IAETSITIPG 493 (858)
Q Consensus 420 ~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd------vAergldIp~ 493 (858)
.+||.+||++-+..+.+.++..... .++.+..++|+.+.+++...+. +...|||+|+ +....+++.+
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~---~~~~~~~~~gg~~~~~~~~~l~----~~~~IiV~TP~rL~~~~~~~~~~l~~ 149 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKY---LNIRSLVVFGGVSINPQMMKLR----GGVDVLVATPGRLLDLEHQNAVKLDQ 149 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhcc---CCCEEEEEECCcCHHHHHHHHc----CCCcEEEEChHHHHHHHHcCCccccc
Confidence 6999999999999888888755322 2678888999999888765553 4568999996 3345677888
Q ss_pred eeEEE-c
Q psy2470 494 IVYVI-D 499 (858)
Q Consensus 494 V~~VI-d 499 (858)
+++|| |
T Consensus 150 v~~lViD 156 (456)
T PRK10590 150 VEILVLD 156 (456)
T ss_pred ceEEEee
Confidence 88777 5
No 219
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=73.37 E-value=9.2 Score=44.06 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCccccCC---CcchHHHhhhhcCCCCchhhhHHh
Q psy2470 96 QNLRVALELLYSLGAMDVNG---NLTKPVGETMAEMPLHPIHAKVLL 139 (858)
Q Consensus 96 ~~l~~a~~~L~~l~ald~~~---~lt~~lG~~ma~lp~~p~~~~~l~ 139 (858)
+.+.+++..|..-+.||+.. -+- .+=+.+-+--|++..++.++
T Consensus 7 ~~l~~~~~~l~~~~~l~e~~i~~~l~-ei~~aLleaDV~~~vv~~~~ 52 (429)
T TIGR01425 7 SSITSALRSMSNATVIDEEVLNAMLK-EICTALLESDVNIKLVRQLR 52 (429)
T ss_pred HHHHHHHHHHhCCCccCHHHHHHHHH-HHHHHHHHCCCCHHHHHHHH
Confidence 46778888888777776652 233 24444444444544444443
No 220
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=72.36 E-value=2.6 Score=44.95 Aligned_cols=28 Identities=11% Similarity=-0.183 Sum_probs=18.7
Q ss_pred cceeEEEeecCccccCCCc--cCCCcccEE
Q psy2470 293 LVSKIFKMSQGKPSDSGVE--PISQSYLVE 320 (858)
Q Consensus 293 ~~t~I~v~TpGrLl~~~~~--~~L~~~~vl 320 (858)
..++|-||||||+..+..+ ..+++..+|
T Consensus 176 ~~~~i~vGTP~Rl~kLle~~~L~l~~l~~i 205 (252)
T PF14617_consen 176 TRVHIAVGTPGRLSKLLENGALSLSNLKRI 205 (252)
T ss_pred CCceEEEeChHHHHHHHHcCCCCcccCeEE
Confidence 3579999999999993332 344444444
No 221
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=71.71 E-value=2.7 Score=48.09 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=10.8
Q ss_pred chhccccCCcchh
Q psy2470 204 LRYIGQPEMGPLL 216 (858)
Q Consensus 204 ~~~~a~TGSGKT~ 216 (858)
+.++|+||+|||.
T Consensus 226 i~lvGptGvGKTT 238 (432)
T PRK12724 226 VFFVGPTGSGKTT 238 (432)
T ss_pred EEEECCCCCCHHH
Confidence 4568999999993
No 222
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=71.40 E-value=8.3 Score=46.40 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=56.1
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----cccc--cCCC
Q psy2470 419 GDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAET--SITI 491 (858)
Q Consensus 419 g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAer--gldI 491 (858)
..+||.+||++-+..+.+.+.+... ..++.+..+||+.+.+.+...++. ...|||+|+ .+.+ .+++
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~---~~~i~v~~l~Gg~~~~~q~~~l~~----~~dIiV~TP~rL~~~l~~~~~~~l 157 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGA---DLGLRFALVYGGVDYDKQRELLQQ----GVDVIIATPGRLIDYVKQHKVVSL 157 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhc---cCCceEEEEECCCCHHHHHHHHhC----CCCEEEECHHHHHHHHHhccccch
Confidence 5799999999999999888875522 237889999999999988877753 357999995 3333 3667
Q ss_pred CCeeEEE-c
Q psy2470 492 PGIVYVI-D 499 (858)
Q Consensus 492 p~V~~VI-d 499 (858)
.++.+|| |
T Consensus 158 ~~v~~lViD 166 (572)
T PRK04537 158 HACEICVLD 166 (572)
T ss_pred hheeeeEec
Confidence 7777655 6
No 223
>KOG1802|consensus
Probab=70.64 E-value=2.5 Score=49.94 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=32.8
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCc
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCR 273 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~ 273 (858)
|.|++|||||+.... +.+.+. +. ..-++||.+|.-+|.-|+|+.+ .+.|.+
T Consensus 430 IQGPPGTGKTvtsa~-------IVyhl~-----~~----~~~~VLvcApSNiAVDqLaeKI-h~tgLK 480 (935)
T KOG1802|consen 430 IQGPPGTGKTVTSAT-------IVYHLA-----RQ----HAGPVLVCAPSNIAVDQLAEKI-HKTGLK 480 (935)
T ss_pred eecCCCCCceehhHH-------HHHHHH-----Hh----cCCceEEEcccchhHHHHHHHH-HhcCce
Confidence 479999999922221 222211 11 1125899999999999999988 344544
No 224
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=70.12 E-value=12 Score=43.27 Aligned_cols=74 Identities=20% Similarity=0.154 Sum_probs=55.6
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC------cccccCCCC
Q psy2470 419 GDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN------IAETSITIP 492 (858)
Q Consensus 419 g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd------vAergldIp 492 (858)
..+||.+||++-+..+.+.+...... .++.+..++|+.+.+.+...++. ...|||+|+ +-...+++.
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~---~~~~v~~~~gg~~~~~~~~~l~~----~~~IlV~TP~~l~~~l~~~~~~l~ 156 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQA---TGLKLGLAYGGDGYDKQLKVLES----GVDILIGTTGRLIDYAKQNHINLG 156 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhcc---CCceEEEEECCCCHHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcccc
Confidence 46999999999999888777654221 27889999999988877776652 357999997 223457788
Q ss_pred CeeEEE-c
Q psy2470 493 GIVYVI-D 499 (858)
Q Consensus 493 ~V~~VI-d 499 (858)
+|.+|| |
T Consensus 157 ~v~~lViD 164 (423)
T PRK04837 157 AIQVVVLD 164 (423)
T ss_pred cccEEEEe
Confidence 888877 5
No 225
>PRK02362 ski2-like helicase; Provisional
Probab=67.32 E-value=1 Score=55.92 Aligned_cols=45 Identities=18% Similarity=0.404 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhcCccccCCC---cchHHHhhhhcCCCCchhhhHHhh
Q psy2470 95 AQNLRVALELLYSLGAMDVNGN---LTKPVGETMAEMPLHPIHAKVLLS 140 (858)
Q Consensus 95 ~~~l~~a~~~L~~l~ald~~~~---lt~~lG~~ma~lp~~p~~~~~l~~ 140 (858)
.+.++.+++.|...|.++.++. .| ++|+.+|.++++|.-++.+..
T Consensus 464 ~~~v~~~l~~L~~~~~i~~~~~~~~~t-~lG~~~s~~~l~~~t~~~~~~ 511 (737)
T PRK02362 464 ERVVDDVLDFLERNGMIEEDGETLEAT-ELGHLVSRLYIDPLSAAEIID 511 (737)
T ss_pred HHHHHHHHHHHHHCCCeeecCCeEeEC-hHHHHHHHhcCCHHHHHHHHH
Confidence 3458999999999999988765 88 699999999999998888754
No 226
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=67.28 E-value=2.4 Score=51.93 Aligned_cols=47 Identities=15% Similarity=0.124 Sum_probs=34.4
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHH
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEF 266 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v 266 (858)
+-+-|+|||||| .|+++|.+.|... . ...+++.++|+.+-.|+.++.
T Consensus 37 ~~iEapTGtGKT-----l~yL~~al~~~~~------~-----~~~viist~t~~lq~q~~~~~ 83 (654)
T COG1199 37 LLIEAPTGTGKT-----LAYLLPALAYARE------E-----GKKVIISTRTKALQEQLLEED 83 (654)
T ss_pred EEEECCCCccHH-----HHHHHHHHHHHHH------c-----CCcEEEECCCHHHHHHHHHhh
Confidence 455699999999 7777777775432 1 135788899998888887654
No 227
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=67.00 E-value=5.3 Score=45.35 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=15.1
Q ss_pred cccchhccccCCcchhhhhhh
Q psy2470 201 PYQLRYIGQPEMGPLLLRVRR 221 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~~ 221 (858)
|..+.++|+||+|||.....+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKL 261 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKM 261 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHH
Confidence 456778999999999333333
No 228
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=66.38 E-value=5.6 Score=45.25 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=30.7
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHH
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVV 264 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~ 264 (858)
+-++|+|||||| .++.+|.+.. + + ..++|.-|.-|+....+.
T Consensus 2 ~lv~g~tGsGKt-----~~~viP~ll~---~---~--------~s~vv~D~Kge~~~~t~~ 43 (384)
T cd01126 2 VLVFAPTRSGKG-----VGFVIPNLLT---W---P--------GSVVVLDPKGENFELTSE 43 (384)
T ss_pred eeEecCCCCCCc-----cEEEccchhc---C---C--------CCEEEEccchhHHHHHHH
Confidence 346899999999 7788886651 1 0 247999999998866654
No 229
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=65.91 E-value=12 Score=36.96 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=13.6
Q ss_pred ccccchhccccCCcch
Q psy2470 200 MPYQLRYIGQPEMGPL 215 (858)
Q Consensus 200 ~~~~~~~~a~TGSGKT 215 (858)
++..+.|+|.+|+|||
T Consensus 4 ~~mki~ITG~PGvGKt 19 (179)
T COG1618 4 MAMKIFITGRPGVGKT 19 (179)
T ss_pred cceEEEEeCCCCccHH
Confidence 4566778999999999
No 230
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=64.65 E-value=3.1 Score=50.62 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=18.8
Q ss_pred CEEEccchHHHHHHHHHHHHH
Q psy2470 248 PTIVRSSIDVACSCTVVEFLT 268 (858)
Q Consensus 248 ~~LVl~PtR~la~qva~~v~~ 268 (858)
.+|+++||..++.++.+++.+
T Consensus 203 ~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 203 RVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CEEEEcCcHHHHHHHHHHHHh
Confidence 589999999999999998864
No 231
>PRK14974 cell division protein FtsY; Provisional
Probab=63.68 E-value=5.5 Score=44.46 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=12.8
Q ss_pred cccchhccccCCcch
Q psy2470 201 PYQLRYIGQPEMGPL 215 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT 215 (858)
|.-+..+|++|+|||
T Consensus 140 ~~vi~~~G~~GvGKT 154 (336)
T PRK14974 140 PVVIVFVGVNGTGKT 154 (336)
T ss_pred CeEEEEEcCCCCCHH
Confidence 556777999999999
No 232
>KOG0952|consensus
Probab=61.67 E-value=9.7 Score=47.55 Aligned_cols=85 Identities=4% Similarity=-0.126 Sum_probs=45.9
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
.-..++||||||+++-.+-|.. + .. .+...+.+++|-..+...-+....+.+-.. |.. ++-
T Consensus 946 ~~~g~ptgsgkt~~ae~a~~~~---------~--~~----~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k---~ie 1006 (1230)
T KOG0952|consen 946 FLLGAPTGSGKTVVAELAIFRA---------L--SY----YPGSKVVYIAPDKALVKERSDDWSKRDELP-GIK---VIE 1006 (1230)
T ss_pred hhhcCCccCcchhHHHHHHHHH---------h--cc----CCCccEEEEcCCchhhcccccchhhhcccC-Cce---eEe
Confidence 3456999999993222211111 0 11 122346888898877766666554443333 444 221
Q ss_pred ---EEeccceeecceeEEEeecCcccc
Q psy2470 284 ---MFRKGRMKILVSKIFKMSQGKPSD 307 (858)
Q Consensus 284 ---~vr~~~~~~~~t~I~v~TpGrLl~ 307 (858)
.+..+-..-..+.|++.||-+.-+
T Consensus 1007 ~tgd~~pd~~~v~~~~~~ittpek~dg 1033 (1230)
T KOG0952|consen 1007 LTGDVTPDVKAVREADIVITTPEKWDG 1033 (1230)
T ss_pred ccCccCCChhheecCceEEcccccccC
Confidence 112221222457999999987766
No 233
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.65 E-value=9.5 Score=44.71 Aligned_cols=59 Identities=17% Similarity=0.091 Sum_probs=51.8
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
.+.+||.+|+++-++...+.|+.. ++.+..++|+.+.+++..++...+.|..+|+++|+
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~-------gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TP 109 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKAS-------GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHc-------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 567999999999888877777765 78889999999999999998888889999999997
No 234
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=61.53 E-value=20 Score=42.06 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=54.8
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC------cccccCCC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN------IAETSITI 491 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd------vAergldI 491 (858)
...+||.+||++-+....+.++..... .++.+..+||+.+...+.+.+. .+...|||+|+ .....+.+
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~---~~~~v~~~~gg~~~~~~~~~~~---~~~~~Iiv~TP~~Ll~~~~~~~~~l 235 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKY---TGLNVMTFVGGMDFDKQLKQLE---ARFCDILVATPGRLLDFNQRGEVHL 235 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhcc---CCCEEEEEEccCChHHHHHHHh---CCCCCEEEECHHHHHHHHHcCCccc
Confidence 357899999999999888888755322 2688999999988776655543 34468999997 22334667
Q ss_pred CCeeEEE-c
Q psy2470 492 PGIVYVI-D 499 (858)
Q Consensus 492 p~V~~VI-d 499 (858)
.++++|| |
T Consensus 236 ~~l~~lViD 244 (475)
T PRK01297 236 DMVEVMVLD 244 (475)
T ss_pred ccCceEEec
Confidence 7777766 5
No 235
>KOG0338|consensus
Probab=60.87 E-value=21 Score=41.40 Aligned_cols=60 Identities=27% Similarity=0.266 Sum_probs=46.6
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
+...|||.+||++-.-.+....++...+ ..+.|...-|||+-..|..++..-+ .|||||+
T Consensus 251 ~~TRVLVL~PTRELaiQv~sV~~qlaqF---t~I~~~L~vGGL~lk~QE~~LRs~P----DIVIATP 310 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQVHSVTKQLAQF---TDITVGLAVGGLDLKAQEAVLRSRP----DIVIATP 310 (691)
T ss_pred cceeEEEEeccHHHHHHHHHHHHHHHhh---ccceeeeeecCccHHHHHHHHhhCC----CEEEecc
Confidence 3468999999999776666655544332 2678888889999999999998755 5999997
No 236
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=60.78 E-value=13 Score=42.10 Aligned_cols=58 Identities=10% Similarity=0.268 Sum_probs=34.2
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEc-cchHHHHHHHHHHHHHHhCCcCc
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVR-SSIDVACSCTVVEFLTEMGCRMD 275 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl-~PtR~la~qva~~v~~e~g~~~g 275 (858)
+..+||||-||| +.+-.+.+...++. ++.+ -+||. -.-|+.|..=.+.+++-||+.+.
T Consensus 206 i~LVGPTGVGKT-------TTlAKLAar~~~~~------~~~k-VaiITtDtYRIGA~EQLk~Ya~im~vp~~ 264 (407)
T COG1419 206 IALVGPTGVGKT-------TTLAKLAARYVMLK------KKKK-VAIITTDTYRIGAVEQLKTYADIMGVPLE 264 (407)
T ss_pred EEEECCCCCcHH-------HHHHHHHHHHHhhc------cCcc-eEEEEeccchhhHHHHHHHHHHHhCCceE
Confidence 445799999999 44444443322111 1222 24554 44788775444778888887754
No 237
>KOG0949|consensus
Probab=60.16 E-value=13 Score=46.17 Aligned_cols=140 Identities=6% Similarity=0.000 Sum_probs=70.9
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCc---CccEeee
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCR---MDFEYIS 280 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~---~g~~~~~ 280 (858)
+-|+|+|-+||| |.-+-+. -..+...+ .. -++-..||..+.-|++..|-.-.+.+ -|.. .
T Consensus 529 avIVAPTSaGKT-------fisfY~i--EKVLResD-----~~-VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~s--l 591 (1330)
T KOG0949|consen 529 AVIVAPTSAGKT-------FISFYAI--EKVLRESD-----SD-VVIYVAPTKALVNQVSANVYARFDTKTFLRGVS--L 591 (1330)
T ss_pred eEEEeeccCCce-------eccHHHH--HHHHhhcC-----CC-EEEEecchHHHhhhhhHHHHHhhccCccccchh--h
Confidence 457899999999 3222111 11121222 22 24668999999988866553322211 1111 0
Q ss_pred eeEEEeccceeecceeEEEeecCcccc-CCCc----cCCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCC
Q psy2470 281 RGYMFRKGRMKILVSKIFKMSQGKPSD-SGVE----PISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 281 vG~~vr~~~~~~~~t~I~v~TpGrLl~-~~~~----~~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~ 350 (858)
.|-..+--+.-.-.++|++.-|-.+-. +.+- ....++.++ ..+- -+.++.+...+-.+. .
T Consensus 592 ~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG-~~ed~l~~Eqll~li---------~ 661 (1330)
T KOG0949|consen 592 LGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIG-NEEDGLLWEQLLLLI---------P 661 (1330)
T ss_pred HhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhcc-ccccchHHHHHHHhc---------C
Confidence 111111111111257899998987766 3332 233344444 1111 000233222221111 2
Q ss_pred ceEEEEeccc-CHHHHHHHhh
Q psy2470 351 LKLIISSATV-DAEEICQFYN 370 (858)
Q Consensus 351 ~q~il~SAT~-~~~~~~~~~~ 370 (858)
.-++..|||+ +++.|..|++
T Consensus 662 CP~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 662 CPFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred CCeeEEecccCCHHHHHHHHH
Confidence 4578999999 9999999987
No 238
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=60.15 E-value=4.1 Score=42.10 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=20.8
Q ss_pred hccccCCcchhhhhhhh--cCcCccccc-ccccCCCCCCCCCC
Q psy2470 206 YIGQPEMGPLLLRVRRA--LDFPDMPYQ-LRYIGQPEMGVGDK 245 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a--~~lP~~~~~-l~~l~~~~~g~g~~ 245 (858)
|.|+||||||...+.+| +..|-+.-. .-+..+..+|+|++
T Consensus 6 i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp 48 (233)
T PF01745_consen 6 IVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRP 48 (233)
T ss_dssp EE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT--
T ss_pred EECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCC
Confidence 67999999998888877 555533221 12223344566654
No 239
>PTZ00110 helicase; Provisional
Probab=59.57 E-value=16 Score=43.78 Aligned_cols=73 Identities=22% Similarity=0.289 Sum_probs=54.1
Q ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----ccccc-CCCCC
Q psy2470 420 DILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAETS-ITIPG 493 (858)
Q Consensus 420 ~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAerg-ldIp~ 493 (858)
.+||.+||++-+..+.+.+++... ..++.+..++|+.+...+...+.. ...|||+|+ ...++ +++..
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~---~~~i~~~~~~gg~~~~~q~~~l~~----~~~IlVaTPgrL~d~l~~~~~~l~~ 277 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGA---SSKIRNTVAYGGVPKRGQIYALRR----GVEILIACPGRLIDFLESNVTNLRR 277 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhc---ccCccEEEEeCCCCHHHHHHHHHc----CCCEEEECHHHHHHHHHcCCCChhh
Confidence 589999999999888888876522 236788889999998877766643 257999996 44444 56778
Q ss_pred eeEEE-c
Q psy2470 494 IVYVI-D 499 (858)
Q Consensus 494 V~~VI-d 499 (858)
+++|| |
T Consensus 278 v~~lViD 284 (545)
T PTZ00110 278 VTYLVLD 284 (545)
T ss_pred CcEEEee
Confidence 88666 5
No 240
>KOG0339|consensus
Probab=57.71 E-value=23 Score=41.03 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=51.7
Q ss_pred CCCEE-EEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC------cccccCC
Q psy2470 418 VGDIL-AFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN------IAETSIT 490 (858)
Q Consensus 418 ~g~iL-VFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd------vAergld 490 (858)
.|+|. +-+||++-+..+...-++.. ..-++.++++||+.+..+|.+.++. ..-|||||+ |---++|
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~---K~ygl~~v~~ygGgsk~eQ~k~Lk~----g~EivVaTPgRlid~VkmKatn 367 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFG---KAYGLRVVAVYGGGSKWEQSKELKE----GAEIVVATPGRLIDMVKMKATN 367 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhh---hhccceEEEeecCCcHHHHHHhhhc----CCeEEEechHHHHHHHHhhccc
Confidence 46774 55799887666555444331 1238999999999999999999872 247999997 2224566
Q ss_pred CCCeeEEE
Q psy2470 491 IPGIVYVI 498 (858)
Q Consensus 491 Ip~V~~VI 498 (858)
+-.|+|.|
T Consensus 368 ~~rvS~LV 375 (731)
T KOG0339|consen 368 LSRVSYLV 375 (731)
T ss_pred ceeeeEEE
Confidence 77777654
No 241
>PRK13766 Hef nuclease; Provisional
Probab=56.83 E-value=32 Score=43.07 Aligned_cols=76 Identities=16% Similarity=0.319 Sum_probs=56.6
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC------cccccC
Q psy2470 416 MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN------IAETSI 489 (858)
Q Consensus 416 ~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd------vAergl 489 (858)
.+.+.+||.+|+..-++...+.+++.... ++..+..++|+.+..+|.+.+.. ..|+|+|+ +...-+
T Consensus 56 ~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~---~~~~v~~~~g~~~~~~r~~~~~~-----~~iiv~T~~~l~~~l~~~~~ 127 (773)
T PRK13766 56 KKGGKVLILAPTKPLVEQHAEFFRKFLNI---PEEKIVVFTGEVSPEKRAELWEK-----AKVIVATPQVIENDLIAGRI 127 (773)
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHHhCC---CCceEEEEeCCCCHHHHHHHHhC-----CCEEEECHHHHHHHHHcCCC
Confidence 35689999999999999988888865321 24578889999999998887753 36999996 223345
Q ss_pred CCCCeeEEE-c
Q psy2470 490 TIPGIVYVI-D 499 (858)
Q Consensus 490 dIp~V~~VI-d 499 (858)
++.++++|| |
T Consensus 128 ~~~~~~liVvD 138 (773)
T PRK13766 128 SLEDVSLLIFD 138 (773)
T ss_pred ChhhCcEEEEE
Confidence 677887766 5
No 242
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=55.30 E-value=20 Score=43.31 Aligned_cols=59 Identities=10% Similarity=0.099 Sum_probs=52.0
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
.|.++|..|+.+-++...+.|+.. |..+..+||+++.+++..+++....|..+|++.|+
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~-------gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAA-------GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHc-------CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 578999999999888888888766 78899999999999999998888889999999886
No 243
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=55.19 E-value=18 Score=40.93 Aligned_cols=12 Identities=17% Similarity=0.443 Sum_probs=10.1
Q ss_pred chhccccCCcch
Q psy2470 204 LRYIGQPEMGPL 215 (858)
Q Consensus 204 ~~~~a~TGSGKT 215 (858)
+..+|+||+|||
T Consensus 140 i~lvGptGvGKT 151 (374)
T PRK14722 140 FALMGPTGVGKT 151 (374)
T ss_pred EEEECCCCCCHH
Confidence 346799999999
No 244
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=54.36 E-value=5.3 Score=43.78 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=14.3
Q ss_pred chhccccCCcchhhhhhhh
Q psy2470 204 LRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a 222 (858)
+-|+|+||||||.+.+.+|
T Consensus 7 i~I~GpTasGKS~LAl~LA 25 (300)
T PRK14729 7 VFIFGPTAVGKSNILFHFP 25 (300)
T ss_pred EEEECCCccCHHHHHHHHH
Confidence 4578999999995555544
No 245
>PF13871 Helicase_C_4: Helicase_C-like
Probab=53.87 E-value=10 Score=41.04 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=46.7
Q ss_pred cCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC
Q psy2470 468 FRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS 539 (858)
Q Consensus 468 ~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~ 539 (858)
.+.|-+|+..|+|-|+-+++||..-.=.-|-| . +..+......|-|...++|-.||+-|++.
T Consensus 54 ~~~F~~g~k~v~iis~AgstGiSlHAd~~~~n-q---------r~Rv~i~le~pwsad~aiQ~~GR~hRsnQ 115 (278)
T PF13871_consen 54 KQAFMDGEKDVAIISDAGSTGISLHADRRVKN-Q---------RRRVHITLELPWSADKAIQQFGRTHRSNQ 115 (278)
T ss_pred HHHHhCCCceEEEEecccccccchhccccCCC-C---------CceEEEEeeCCCCHHHHHHHhcccccccc
Confidence 34577899999999999999999876555555 1 11222233478899999999999999874
No 246
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=53.00 E-value=30 Score=33.61 Aligned_cols=75 Identities=16% Similarity=0.278 Sum_probs=51.6
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHH-HHHHhcCCCCCCcEEEEEecCc------ccccC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNN-EQIKVFRPTPRAMRKIVIATNI------AETSI 489 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~-~r~~v~~~f~~g~~kVlvATdv------Aergl 489 (858)
..+.+|+.+|+++-++...+.+.+.... .+..+..+||+.+.+ ++...+ .+...|+|+|.- ....+
T Consensus 43 ~~~~~lii~P~~~l~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~~~~ 115 (169)
T PF00270_consen 43 KDARVLIIVPTRALAEQQFERLRKFFSN---TNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLISNGKI 115 (169)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHHTTT---TTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHHHTTSS
T ss_pred CCceEEEEeecccccccccccccccccc---cccccccccccccccccccccc----cccccccccCcchhhcccccccc
Confidence 4568999999999999999999865322 357788889999865 444444 345678888862 11223
Q ss_pred CCCCeeEEE
Q psy2470 490 TIPGIVYVI 498 (858)
Q Consensus 490 dIp~V~~VI 498 (858)
++..+++||
T Consensus 116 ~~~~~~~iV 124 (169)
T PF00270_consen 116 NISRLSLIV 124 (169)
T ss_dssp TGTTESEEE
T ss_pred ccccceeec
Confidence 455566555
No 247
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=51.58 E-value=12 Score=45.61 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=33.2
Q ss_pred cccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHH
Q psy2470 201 PYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVV 264 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~ 264 (858)
+-++-++|+|||||| ..+.+|.++. + ...++|.-|-.|+..-.+.
T Consensus 175 ~~HvlviapTgSGKg-----vg~ViPnLL~---~-----------~~S~VV~D~KGE~~~~Tag 219 (636)
T PRK13880 175 PEHVLTYAPTRSGKG-----VGLVVPTLLS---W-----------GHSSVITDLKGELWALTAG 219 (636)
T ss_pred CceEEEEecCCCCCc-----eEEEccchhh---C-----------CCCEEEEeCcHHHHHHHHH
Confidence 556777999999999 7788887651 1 1147999999998765544
No 248
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=50.08 E-value=12 Score=45.08 Aligned_cols=50 Identities=10% Similarity=0.054 Sum_probs=36.0
Q ss_pred ccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhC
Q psy2470 202 YQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMG 271 (858)
Q Consensus 202 ~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g 271 (858)
-++-++|+|||||| ..+.+|.++. + + ..++|+-|--|+....+... +.+|
T Consensus 159 ~hvLviapTgSGKg-----~g~VIPnLL~---~---~--------~S~VV~DpKGEl~~~Ta~~R-~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKG-----VGFVIPNLLF---W---E--------DSVVVHDIKLENYELTSGWR-EKQG 208 (606)
T ss_pred ceEEEEcCCCCCcc-----eEEehhhHHh---C---C--------CCEEEEeCcHHHHHHHHHHH-HHCC
Confidence 35668999999999 8888887662 1 0 14799999999987776533 4444
No 249
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=49.53 E-value=9.8 Score=41.76 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=29.0
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccc---cCCCCCCCCCCc
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRY---IGQPEMGVGDKA 246 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~---l~~~~~g~g~~~ 246 (858)
+-|.|+|+||||-..+.+|-.++.-..+.+- ....+.|++++.
T Consensus 6 i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps 51 (308)
T COG0324 6 IVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPS 51 (308)
T ss_pred EEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCC
Confidence 4578999999998888888666654433322 233466777763
No 250
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=49.38 E-value=7.5 Score=47.76 Aligned_cols=56 Identities=11% Similarity=0.020 Sum_probs=35.0
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCC
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGC 272 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~ 272 (858)
+.++|-+|||||. .+- ....++-. +.| -+...+|+++-|+-||..+-+|+.+.+|.
T Consensus 18 ~lV~AgpGSGKT~-------vL~---~Ria~Li~-~~~--v~p~~IL~lTFT~kAA~em~~Rl~~~l~~ 73 (672)
T PRK10919 18 CLVLAGAGSGKTR-------VIT---NKIAHLIR-GCG--YQARHIAAVTFTNKAAREMKERVAQTLGR 73 (672)
T ss_pred EEEEecCCCCHHH-------HHH---HHHHHHHH-hcC--CCHHHeeeEechHHHHHHHHHHHHHHhCc
Confidence 4567999999991 111 11111110 011 12235899999999999999999877663
No 251
>KOG0330|consensus
Probab=49.33 E-value=81 Score=35.58 Aligned_cols=86 Identities=10% Similarity=0.111 Sum_probs=60.0
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcc
Q psy2470 406 VDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIA 485 (858)
Q Consensus 406 ~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvA 485 (858)
+..+..++.+...--+||-.||++-+..+++..+... ...|+.+..|-||+....|...+.+ +..|||||+=+
T Consensus 117 LPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg---~~iglr~~~lvGG~~m~~q~~~L~k----kPhilVaTPGr 189 (476)
T KOG0330|consen 117 LPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALG---SGIGLRVAVLVGGMDMMLQANQLSK----KPHILVATPGR 189 (476)
T ss_pred HHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhc---cccCeEEEEEecCchHHHHHHHhhc----CCCEEEeCcHH
Confidence 3444445544445678999999998888888877552 2348999999999998887766643 24689999833
Q ss_pred -------cccCCCCCeeEEE
Q psy2470 486 -------ETSITIPGIVYVI 498 (858)
Q Consensus 486 -------ergldIp~V~~VI 498 (858)
-.|+....++|-|
T Consensus 190 L~dhl~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 190 LWDHLENTKGFSLEQLKFLV 209 (476)
T ss_pred HHHHHHhccCccHHHhHHHh
Confidence 3555666666544
No 252
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=49.20 E-value=7.7 Score=42.38 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=13.9
Q ss_pred chhccccCCcchhhhhhhh
Q psy2470 204 LRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a 222 (858)
+-.+||||||||+..-.+|
T Consensus 100 ILLiGPTGsGKTlLAqTLA 118 (408)
T COG1219 100 ILLIGPTGSGKTLLAQTLA 118 (408)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 4457999999996555544
No 253
>KOG0329|consensus
Probab=49.17 E-value=30 Score=36.50 Aligned_cols=74 Identities=14% Similarity=0.200 Sum_probs=56.5
Q ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC------cccccCCCCC
Q psy2470 420 DILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN------IAETSITIPG 493 (858)
Q Consensus 420 ~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd------vAergldIp~ 493 (858)
.+||.|.|++-+-.+.+.-.+.... .|+.++..++||++-+.-..+++.. -.|+|+|+ +-++++++.+
T Consensus 112 svlvmchtrelafqi~~ey~rfsky--mP~vkvaVFfGG~~Ikkdee~lk~~----PhivVgTPGrilALvr~k~l~lk~ 185 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKY--MPSVKVSVFFGGLFIKKDEELLKNC----PHIVVGTPGRILALVRNRSLNLKN 185 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhh--CCCceEEEEEcceeccccHHHHhCC----CeEEEcCcHHHHHHHHhccCchhh
Confidence 5799999998776666554433222 4689999999999999888888763 47999998 4568899999
Q ss_pred eeEE-Ec
Q psy2470 494 IVYV-ID 499 (858)
Q Consensus 494 V~~V-Id 499 (858)
|.+- +|
T Consensus 186 vkhFvlD 192 (387)
T KOG0329|consen 186 VKHFVLD 192 (387)
T ss_pred cceeehh
Confidence 9864 46
No 254
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=48.92 E-value=8.3 Score=35.47 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=12.8
Q ss_pred chhccccCCcchhhhhhhh
Q psy2470 204 LRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a 222 (858)
+-+.|++|||||......|
T Consensus 5 ~~l~G~~G~GKTtl~~~l~ 23 (148)
T smart00382 5 ILIVGPPGSGKTTLARALA 23 (148)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 4467999999993333333
No 255
>COG4889 Predicted helicase [General function prediction only]
Probab=48.65 E-value=19 Score=44.27 Aligned_cols=106 Identities=20% Similarity=0.301 Sum_probs=71.5
Q ss_pred CEEEEcCCHHHHHHHHHHHHHh----c-cC-CCCcceEE--EeccCCCCHHHHHHhc---CCCCCCcEEEEEecCccccc
Q psy2470 420 DILAFVIGLEQIEHIIGILKQY----H-NQ-REDLKLLI--LPMHGSLPNNEQIKVF---RPTPRAMRKIVIATNIAETS 488 (858)
Q Consensus 420 ~iLVFl~t~~~i~~l~~~L~~~----~-~~-~~~~~~~v--~~LHg~l~q~~r~~v~---~~f~~g~~kVlvATdvAerg 488 (858)
+.+-|+.+.++-..+++.+... . .. .+.+++.+ -..-|.|...+|.+.+ ..|.+...|||----.+.-|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 4566776655555555444311 0 00 01134444 4455889988886654 35788899998777788899
Q ss_pred CCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEE
Q psy2470 489 ITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVY 543 (858)
Q Consensus 489 ldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~ 543 (858)
+|||..+-||= |||++. .-+.+|-+||.=|..+|+-|
T Consensus 542 VDVPaLDsViF--------f~pr~s----------mVDIVQaVGRVMRKa~gK~y 578 (1518)
T COG4889 542 VDVPALDSVIF--------FDPRSS----------MVDIVQAVGRVMRKAKGKKY 578 (1518)
T ss_pred CCccccceEEE--------ecCchh----------HHHHHHHHHHHHHhCcCCcc
Confidence 99999999998 887755 44567999999988776544
No 256
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=48.62 E-value=9.2 Score=44.70 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=31.2
Q ss_pred cchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHH
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVV 264 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~ 264 (858)
++-++|+|||||| ..+.+|.++ .+ . | .++|..|-.|++...+.
T Consensus 46 h~lvig~tgSGKt-----~~~viP~ll---~~-----~--~----s~iV~D~KgEl~~~t~~ 88 (469)
T PF02534_consen 46 HVLVIGPTGSGKT-----TSFVIPNLL---NY-----P--G----SMIVTDPKGELYEKTAG 88 (469)
T ss_pred EEEEEeCCCCCcc-----ceeeHhHHH---hc-----c--C----CEEEEECCCcHHHHHHH
Confidence 5667999999999 777788654 11 1 1 47999998888766654
No 257
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=47.68 E-value=38 Score=39.19 Aligned_cols=12 Identities=17% Similarity=0.454 Sum_probs=10.3
Q ss_pred chhccccCCcch
Q psy2470 204 LRYIGQPEMGPL 215 (858)
Q Consensus 204 ~~~~a~TGSGKT 215 (858)
+.++|+||+|||
T Consensus 224 i~~vGptGvGKT 235 (424)
T PRK05703 224 VALVGPTGVGKT 235 (424)
T ss_pred EEEECCCCCCHH
Confidence 456799999999
No 258
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.47 E-value=24 Score=43.63 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=12.6
Q ss_pred chhccccCCcchhhhhhh
Q psy2470 204 LRYIGQPEMGPLLLRVRR 221 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~ 221 (858)
+..+|+||+|||.....+
T Consensus 188 i~lVGpnGvGKTTTiaKL 205 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKL 205 (767)
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 456899999998333333
No 259
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=46.23 E-value=50 Score=38.44 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=58.9
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC------cccccCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN------IAETSIT 490 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd------vAergld 490 (858)
.+|.+|.-.||+-=+..-++.+++.... |.-.+..|-|..++++|...... .||+|||+ +.+-=||
T Consensus 57 ~~~kvlfLAPTKPLV~Qh~~~~~~v~~i---p~~~i~~ltGev~p~~R~~~w~~-----~kVfvaTPQvveNDl~~Grid 128 (542)
T COG1111 57 FGGKVLFLAPTKPLVLQHAEFCRKVTGI---PEDEIAALTGEVRPEEREELWAK-----KKVFVATPQVVENDLKAGRID 128 (542)
T ss_pred cCCeEEEecCCchHHHHHHHHHHHHhCC---ChhheeeecCCCChHHHHHHHhh-----CCEEEeccHHHHhHHhcCccC
Confidence 3567888889998888888888765332 35578899999999999999863 68999996 5555589
Q ss_pred CCCeeEEE
Q psy2470 491 IPGIVYVI 498 (858)
Q Consensus 491 Ip~V~~VI 498 (858)
+.+|.++|
T Consensus 129 ~~dv~~li 136 (542)
T COG1111 129 LDDVSLLI 136 (542)
T ss_pred hHHceEEE
Confidence 99999988
No 260
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=45.94 E-value=15 Score=42.37 Aligned_cols=14 Identities=21% Similarity=0.237 Sum_probs=11.6
Q ss_pred ccchhccccCCcch
Q psy2470 202 YQLRYIGQPEMGPL 215 (858)
Q Consensus 202 ~~~~~~a~TGSGKT 215 (858)
.-+..+|+||+|||
T Consensus 192 ~vi~lvGpnG~GKT 205 (420)
T PRK14721 192 GVYALIGPTGVGKT 205 (420)
T ss_pred cEEEEECCCCCCHH
Confidence 34567899999999
No 261
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=45.82 E-value=7.5 Score=32.07 Aligned_cols=10 Identities=20% Similarity=0.199 Sum_probs=9.3
Q ss_pred hccccCCcch
Q psy2470 206 YIGQPEMGPL 215 (858)
Q Consensus 206 ~~a~TGSGKT 215 (858)
++|++|||||
T Consensus 28 i~G~nGsGKS 37 (62)
T PF13555_consen 28 ITGPNGSGKS 37 (62)
T ss_pred EECCCCCCHH
Confidence 5799999999
No 262
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=45.17 E-value=17 Score=44.15 Aligned_cols=51 Identities=8% Similarity=0.021 Sum_probs=35.4
Q ss_pred cccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhC
Q psy2470 201 PYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMG 271 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g 271 (858)
+-++-+.|+|||||| ..+.+|.++ .+ ...++|+-|..|++..++..- +.+|
T Consensus 224 ~~H~Lv~ApTgsGKt-----~g~VIPnLL---~~-----------~gS~VV~DpKgEl~~~Ta~~R-~~~G 274 (641)
T PRK13822 224 STHGLVFAGSGGFKT-----TSVVVPTAL---KW-----------GGPLVVLDPSTEVAPMVSEHR-RDAG 274 (641)
T ss_pred CceEEEEeCCCCCcc-----ceEehhhhh---cC-----------CCCEEEEeCcHHHHHHHHHHH-HHCC
Confidence 346677999999999 788888654 11 114799999999876665532 4444
No 263
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=45.07 E-value=27 Score=37.60 Aligned_cols=132 Identities=8% Similarity=-0.090 Sum_probs=0.0
Q ss_pred ccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEec-
Q psy2470 209 QPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRK- 287 (858)
Q Consensus 209 ~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~- 287 (858)
++|+|||+..+..+..+-... .......+||++|. -+..|=..++.+.....-... +-|.-..
T Consensus 33 e~GlGKT~~~i~~~~~l~~~~------------~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v---~~~~~~~~ 96 (299)
T PF00176_consen 33 EMGLGKTITAIALISYLKNEF------------PQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRV---IIYDGDSE 96 (299)
T ss_dssp -TTSSHHHHHHHHHHHHHHCC------------TTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-E---EEESSSCH
T ss_pred CCCCCchhhhhhhhhhhhhcc------------ccccccceeEeecc-chhhhhhhhhccccccccccc---cccccccc
Q ss_pred ----cceeecceeEEEeecCccc-----cCCCccCCCcccEE--------EecCCCCCchhhhhHHHHHHHHhcccCCCC
Q psy2470 288 ----GRMKILVSKIFKMSQGKPS-----DSGVEPISQSYLVE--------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 288 ----~~~~~~~t~I~v~TpGrLl-----~~~~~~~L~~~~vl--------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~ 350 (858)
........+++++|...+. .......-.++..| +.-+ ....+.+. ..+ .
T Consensus 97 ~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~--------s~~~~~l~-----~l~-~ 162 (299)
T PF00176_consen 97 RRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD--------SKRYKALR-----KLR-A 162 (299)
T ss_dssp HHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT--------SHHHHHHH-----CCC-E
T ss_pred cccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc--------cccccccc-----ccc-c
Q ss_pred ceEEEEeccc---CHHHHHHHhh
Q psy2470 351 LKLIISSATV---DAEEICQFYN 370 (858)
Q Consensus 351 ~q~il~SAT~---~~~~~~~~~~ 370 (858)
...+++|||. +..++...+.
T Consensus 163 ~~~~lLSgTP~~n~~~dl~~~l~ 185 (299)
T PF00176_consen 163 RYRWLLSGTPIQNSLEDLYSLLR 185 (299)
T ss_dssp CEEEEE-SS-SSSGSHHHHHHHH
T ss_pred ceEEeeccccccccccccccchh
No 264
>PRK09401 reverse gyrase; Reviewed
Probab=44.99 E-value=51 Score=43.19 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=54.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEE--EeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----cccccC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLI--LPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAETSI 489 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v--~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAergl 489 (858)
..+++||.+||++=+..+++.++..... .++.+ ...||+++.+++.+..+.+++|...|+|+|+ ..+ .+
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~---~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l 197 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEK---VGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-EL 197 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhh---cCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hc
Confidence 3678999999999999999999865321 13333 4456677777777777777778889999995 322 34
Q ss_pred CCCCeeEEE
Q psy2470 490 TIPGIVYVI 498 (858)
Q Consensus 490 dIp~V~~VI 498 (858)
....+++||
T Consensus 198 ~~~~~~~lV 206 (1176)
T PRK09401 198 PKKKFDFVF 206 (1176)
T ss_pred cccccCEEE
Confidence 444566655
No 265
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=44.94 E-value=7.7 Score=40.48 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=13.0
Q ss_pred cccchhccccCCcch
Q psy2470 201 PYQLRYIGQPEMGPL 215 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT 215 (858)
.-++.|.|.||||||
T Consensus 23 ~~H~~I~G~TGsGKS 37 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKS 37 (229)
T ss_pred cceEEEECCCCCCHH
Confidence 457789999999999
No 266
>KOG1533|consensus
Probab=44.89 E-value=8.8 Score=40.14 Aligned_cols=16 Identities=38% Similarity=0.646 Sum_probs=13.6
Q ss_pred ccccchhccccCCcch
Q psy2470 200 MPYQLRYIGQPEMGPL 215 (858)
Q Consensus 200 ~~~~~~~~a~TGSGKT 215 (858)
||+..-++|++|||||
T Consensus 1 m~fgqvVIGPPgSGKs 16 (290)
T KOG1533|consen 1 MPFGQVVIGPPGSGKS 16 (290)
T ss_pred CCcceEEEcCCCCCcc
Confidence 4667778999999998
No 267
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=44.58 E-value=30 Score=40.54 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=29.2
Q ss_pred cchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEE-ccchHHHHHHHHHHHHHHhCCc
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIV-RSSIDVACSCTVVEFLTEMGCR 273 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LV-l~PtR~la~qva~~v~~e~g~~ 273 (858)
-+..+|+||+|||..-..+|..+. .+.| ..+. .+| .-+-|..|.+-...+++.+|..
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~~~~-----------~~~G--~~kV-~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAARCV-----------MRHG--ASKV-ALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred EEEEECCCCccHHHHHHHHHHHHH-----------HhcC--CCeE-EEEeCCccchhHHHHHHHHHHHhCCC
Confidence 355689999999933333331110 0111 1111 233 2334666665556677777754
No 268
>KOG1015|consensus
Probab=43.81 E-value=71 Score=39.95 Aligned_cols=124 Identities=18% Similarity=0.148 Sum_probs=84.9
Q ss_pred HHHHHHhhC--CCCCEEEEcCCHHHHHHHHHHHHHhccCCC---------------CcceEEEeccCCCCHHHHHHhcCC
Q psy2470 408 TAIKIHESM--PVGDILAFVIGLEQIEHIIGILKQYHNQRE---------------DLKLLILPMHGSLPNNEQIKVFRP 470 (858)
Q Consensus 408 ~l~~i~~~~--~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~---------------~~~~~v~~LHg~l~q~~r~~v~~~ 470 (858)
+|+.|+... -+.+.|||-.+-...+.+...|........ ..|....-|-|..+..+|.+.-+.
T Consensus 1130 LLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~ 1209 (1567)
T KOG1015|consen 1130 LLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEE 1209 (1567)
T ss_pred hHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHH
Confidence 344555332 256799998888777777777763321110 223446678899999999998777
Q ss_pred CCCC----cEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 471 TPRA----MRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 471 f~~g----~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|-+- .+-.||+|--..-||++-...-||=++- .|||.- --+.+=|+-|-|.+.|-..|||.
T Consensus 1210 FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDa----sWNPSy-----------DtQSIFRvyRfGQtKPvyiYRfi 1274 (1567)
T KOG1015|consen 1210 FNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDA----SWNPSY-----------DTQSIFRVYRFGQTKPVYIYRFI 1274 (1567)
T ss_pred hcCcccceeEEEEEeeccCccccceeecceEEEEec----ccCCcc-----------chHHHHHHHhhcCcCceeehhhh
Confidence 7432 3668999999999999877777774221 144332 34556799999999999999998
No 269
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=43.60 E-value=80 Score=35.04 Aligned_cols=18 Identities=17% Similarity=0.525 Sum_probs=15.4
Q ss_pred CCccccchhccccCCcch
Q psy2470 198 PDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 198 ~~~~~~~~~~a~TGSGKT 215 (858)
.+-|.-+-++|-+|+|||
T Consensus 136 ~~~p~Vil~vGVNG~GKT 153 (340)
T COG0552 136 EKKPFVILFVGVNGVGKT 153 (340)
T ss_pred CCCcEEEEEEecCCCchH
Confidence 344888889999999999
No 270
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=42.52 E-value=10 Score=34.88 Aligned_cols=18 Identities=28% Similarity=0.220 Sum_probs=13.5
Q ss_pred hhccccCCcchhhhhhhh
Q psy2470 205 RYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a 222 (858)
-|.|++|||||...-.+|
T Consensus 3 ~I~G~~gsGKST~a~~La 20 (121)
T PF13207_consen 3 IISGPPGSGKSTLAKELA 20 (121)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 367999999996555555
No 271
>TIGR02647 DNA conserved hypothetical protein TIGR02647. Members of this family are found, so far, only in the Gammaproteobacteria. The function is unknown. The location on the chromosome usually is not far from housekeeping genes rather than in what is clearly, say, a prophage region. Some members have been annotated in public databases as DNA-binding protein inhibitor Id-2-related protein, putative transcriptional regulator, or hypothetical DNA binding protein.
Probab=41.42 E-value=29 Score=29.60 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHHhcCcccc-CC-CcchHHHhhhhc
Q psy2470 91 SPPPAQNLRVALELLYSLGAMDV-NG-NLTKPVGETMAE 127 (858)
Q Consensus 91 ~~P~~~~l~~a~~~L~~l~ald~-~~-~lt~~lG~~ma~ 127 (858)
..-..+++..|.+.|+.-|.+++ +| -|| +.|...|+
T Consensus 29 H~dA~p~~i~a~~RLheKGLI~~pdGgyLT-~~G~~~aE 66 (77)
T TIGR02647 29 HSTASPAAVAAAARLHEKGLTTQPDGGYLT-SLGLEAAE 66 (77)
T ss_pred cccCCHHHHHHHHHHHHcCCccCCCCCEec-HHHHHHHH
Confidence 34456789999999999999965 44 499 69998875
No 272
>PLN02165 adenylate isopentenyltransferase
Probab=41.05 E-value=11 Score=41.79 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=17.5
Q ss_pred chhccccCCcchhhhhhhhcCcC
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFP 226 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP 226 (858)
+.|+|+||||||.+.+.+|-.+.
T Consensus 46 ivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 46 VVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred EEEECCCCCcHHHHHHHHHHHcC
Confidence 56789999999977776665544
No 273
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=40.90 E-value=36 Score=41.33 Aligned_cols=59 Identities=10% Similarity=0.077 Sum_probs=51.5
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
.|.+||.+|+.+-+....+.++.. ++.+..++|+.+.+++..+++....|..+++++|+
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~-------gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLAN-------GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHc-------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 578999999999888888888765 78888999999999998888888889999999885
No 274
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=40.58 E-value=35 Score=43.93 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=48.8
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCC--CcEEEEEecC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPR--AMRKIVIATN 483 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~--g~~kVlvATd 483 (858)
.|.+||..|+.+-+..-...|... ++.+..+.|+++..++.++++..+. |..+||+.|+
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~-------GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQA-------NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhC-------CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 578899999998876555555544 8889999999999999999887765 8899999998
No 275
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=40.56 E-value=28 Score=39.56 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=13.6
Q ss_pred cchhccccCCcchhhhhhhh
Q psy2470 203 QLRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a 222 (858)
-+.++|+||+|||......|
T Consensus 208 ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 34568999999994444433
No 276
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=40.28 E-value=74 Score=39.65 Aligned_cols=74 Identities=14% Similarity=0.171 Sum_probs=53.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-cccccC------
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-IAETSI------ 489 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-vAergl------ 489 (858)
+...+|+.+||++=+....+.+++.. ..++.+..++|+.++++|..+-+. ..|||+|+ ....++
T Consensus 80 ~~~~aL~l~PtraLa~q~~~~l~~l~----~~~i~v~~~~Gdt~~~~r~~i~~~-----~~IivtTPd~L~~~~L~~~~~ 150 (742)
T TIGR03817 80 PRATALYLAPTKALAADQLRAVRELT----LRGVRPATYDGDTPTEERRWAREH-----ARYVLTNPDMLHRGILPSHAR 150 (742)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHhc----cCCeEEEEEeCCCCHHHHHHHhcC-----CCEEEEChHHHHHhhccchhH
Confidence 45689999999999998888888653 136889999999998887655432 47999996 222221
Q ss_pred ---CCCCeeEEE-c
Q psy2470 490 ---TIPGIVYVI-D 499 (858)
Q Consensus 490 ---dIp~V~~VI-d 499 (858)
.+.++++|| |
T Consensus 151 ~~~~l~~l~~vViD 164 (742)
T TIGR03817 151 WARFLRRLRYVVID 164 (742)
T ss_pred HHHHHhcCCEEEEe
Confidence 156777766 6
No 277
>PTZ00424 helicase 45; Provisional
Probab=39.97 E-value=1.1e+02 Score=34.81 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=51.6
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcc------cccCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIA------ETSIT 490 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvA------ergld 490 (858)
....+||++|+++-+..+.+.+..... ..+..+..+.|+....++...+. ++ ..|+|+|+=. .+.+.
T Consensus 95 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~---~~-~~Ivv~Tp~~l~~~l~~~~~~ 167 (401)
T PTZ00424 95 NACQALILAPTRELAQQIQKVVLALGD---YLKVRCHACVGGTVVRDDINKLK---AG-VHMVVGTPGRVYDMIDKRHLR 167 (401)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHhh---hcCceEEEEECCcCHHHHHHHHc---CC-CCEEEECcHHHHHHHHhCCcc
Confidence 356799999999988888777765422 12566777888887766544443 22 4799999721 23456
Q ss_pred CCCeeEEE-c
Q psy2470 491 IPGIVYVI-D 499 (858)
Q Consensus 491 Ip~V~~VI-d 499 (858)
+.++++|| |
T Consensus 168 l~~i~lvViD 177 (401)
T PTZ00424 168 VDDLKLFILD 177 (401)
T ss_pred cccccEEEEe
Confidence 78888776 5
No 278
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=39.55 E-value=11 Score=41.01 Aligned_cols=11 Identities=18% Similarity=0.132 Sum_probs=9.7
Q ss_pred hhccccCCcch
Q psy2470 205 RYIGQPEMGPL 215 (858)
Q Consensus 205 ~~~a~TGSGKT 215 (858)
-++|+||||||
T Consensus 129 LVTGpTGSGKS 139 (353)
T COG2805 129 LVTGPTGSGKS 139 (353)
T ss_pred EEeCCCCCcHH
Confidence 46899999997
No 279
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=39.11 E-value=9.6 Score=39.03 Aligned_cols=18 Identities=11% Similarity=-0.090 Sum_probs=14.4
Q ss_pred CEEEccchHHHHHHHHHH
Q psy2470 248 PTIVRSSIDVACSCTVVE 265 (858)
Q Consensus 248 ~~LVl~PtR~la~qva~~ 265 (858)
.+++++||.-++..+.+.
T Consensus 48 ~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 48 RVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -EEEEESSHHHHHHHHHH
T ss_pred eEEEECCcHHHHHHHHHh
Confidence 579999999998877665
No 280
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=38.44 E-value=51 Score=31.85 Aligned_cols=84 Identities=24% Similarity=0.180 Sum_probs=48.1
Q ss_pred CHHHHHHhcCCCCCCc-EEEEEecCcccccCCCCCe--eEEEcCCCccceeccCC----------CC-CCcc--eeeecC
Q psy2470 460 PNNEQIKVFRPTPRAM-RKIVIATNIAETSITIPGI--VYVIDPGFVKARWFNPN----------TL-TNSL--VVVPIS 523 (858)
Q Consensus 460 ~q~~r~~v~~~f~~g~-~kVlvATdvAergldIp~V--~~VId~g~~k~~~yd~~----------~g-~~~l--~~~pis 523 (858)
...+...+++.|++.. ..||++|.-..-|||+|+- +.||=.|+|-..-.|+. .+ .... ...|..
T Consensus 32 ~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a 111 (141)
T smart00492 32 DGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLPDA 111 (141)
T ss_pred ChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHHHH
Confidence 3334556666665433 3799999778889999974 56666677753222211 00 1111 112334
Q ss_pred HhhHHHhhcccCCCCC--ceEE
Q psy2470 524 KASAVQRAGRAGRVRS--GHVY 543 (858)
Q Consensus 524 ~~~~~qR~GRaGR~g~--G~~~ 543 (858)
.-...|=+||.=|... |..+
T Consensus 112 ~~~l~Qa~GR~iR~~~D~g~i~ 133 (141)
T smart00492 112 MRTLAQCVGRLIRGANDYGVVV 133 (141)
T ss_pred HHHHHHHhCccccCcCceEEEE
Confidence 4556788888888665 6544
No 281
>PRK11054 helD DNA helicase IV; Provisional
Probab=38.40 E-value=14 Score=45.50 Aligned_cols=54 Identities=11% Similarity=0.043 Sum_probs=35.3
Q ss_pred chhccccCCcchhhhhh-hhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhC
Q psy2470 204 LRYIGQPEMGPLLLRVR-RALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMG 271 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~-~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g 271 (858)
+.++|-.|||||.+-+. .|+++- .+ +.....+|+++.||-+|..+.+|+.+.+|
T Consensus 212 ~lV~agaGSGKT~vl~~r~ayLl~-------------~~-~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 212 LLVLAGAGSGKTSVLVARAGWLLA-------------RG-QAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHH-------------hC-CCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 46789999999933222 122211 11 11223589999999999999999877665
No 282
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=38.25 E-value=19 Score=44.69 Aligned_cols=56 Identities=7% Similarity=0.016 Sum_probs=35.4
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCC
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGC 272 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~ 272 (858)
+.++|-.||||| ..+. ....++-. +.| -....+|+++-|+-||..+-+|+.+.+|.
T Consensus 25 ~lV~AgaGSGKT-------~vl~---~Ria~Li~-~~~--v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~ 80 (721)
T PRK11773 25 MLVLAGAGSGKT-------RVLV---HRIAWLMQ-VEN--ASPYSIMAVTFTNKAAAEMRHRIEQLLGT 80 (721)
T ss_pred EEEEecCCCCHH-------HHHH---HHHHHHHH-cCC--CChhHeEeeeccHHHHHHHHHHHHHHhcc
Confidence 456799999999 1111 11112111 111 12235899999999999999999877663
No 283
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=38.19 E-value=78 Score=37.63 Aligned_cols=75 Identities=11% Similarity=0.098 Sum_probs=51.7
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----cccc-cCCC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAET-SITI 491 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAer-gldI 491 (858)
...+||.+||++=+..+.+.++.... ..++.+..+.|+-+..++...+. . ...|||+|+ +..+ ++.+
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~---~~~~~~~~~~gG~~~~~q~~~l~---~-~~~IiV~TPgrL~~~l~~~~~~l 268 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGK---GLPFKTALVVGGDAMPQQLYRIQ---Q-GVELIVGTPGRLIDLLSKHDIEL 268 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhC---CCCceEEEEECCcchHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCccc
Confidence 45789999999988877777664422 12577777888877666654443 2 257999994 4443 5778
Q ss_pred CCeeEEE-c
Q psy2470 492 PGIVYVI-D 499 (858)
Q Consensus 492 p~V~~VI-d 499 (858)
.++.+|| |
T Consensus 269 ~~v~~lViD 277 (518)
T PLN00206 269 DNVSVLVLD 277 (518)
T ss_pred hheeEEEee
Confidence 8898776 5
No 284
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=38.16 E-value=3.6e+02 Score=37.67 Aligned_cols=56 Identities=4% Similarity=0.064 Sum_probs=34.9
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhcc-CC--CCcceEEEeccC-CCCHHHHHHhcCCCCCC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHN-QR--EDLKLLILPMHG-SLPNNEQIKVFRPTPRA 474 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~-~~--~~~~~~v~~LHg-~l~q~~r~~v~~~f~~g 474 (858)
....+|+.+|.+++..+...++.... .+ +..+..+..|-. +|++.++... ..|+.|
T Consensus 626 r~~tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 626 RQNSQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred cCceEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 34589999999999999999984321 11 123445444433 5777777643 344444
No 285
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=38.05 E-value=9.4 Score=37.13 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=12.8
Q ss_pred CCCccceeeEEeecccc
Q psy2470 13 DPSVEKYSVIMLDKVHE 29 (858)
Q Consensus 13 ~~~~~~~~~~~~~~~~~ 29 (858)
+-.+-+|++||+||+|=
T Consensus 90 p~~~~~yd~II~DEcH~ 106 (148)
T PF07652_consen 90 PCRLKNYDVIIMDECHF 106 (148)
T ss_dssp SSCTTS-SEEEECTTT-
T ss_pred cccccCccEEEEecccc
Confidence 44478999999999995
No 286
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=37.85 E-value=26 Score=42.53 Aligned_cols=45 Identities=7% Similarity=0.074 Sum_probs=33.3
Q ss_pred cccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHH
Q psy2470 201 PYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVV 264 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~ 264 (858)
|-++-+.|+|||||| ..+.+|.++ .+ + ..++|+-|..|++.-.+.
T Consensus 211 ~~H~lv~ApTgsGKg-----vg~VIPnLL---~~---~--------gS~VV~DpKgE~~~~Ta~ 255 (623)
T TIGR02767 211 STHMIFFAGSGGFKT-----TSVVVPTAL---KY---G--------GPLVCLDPSTEVAPMVCE 255 (623)
T ss_pred CceEEEEeCCCCCcc-----ceeehhhhh---cC---C--------CCEEEEEChHHHHHHHHH
Confidence 456677999999999 788888655 11 1 147999999998766654
No 287
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=37.56 E-value=18 Score=44.75 Aligned_cols=56 Identities=7% Similarity=0.043 Sum_probs=35.5
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCC
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGC 272 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~ 272 (858)
+.++|-.||||| ..+. ....++-. . .|-+...+|+++-|+-||..+.+|+.+.++.
T Consensus 20 ~lV~AgaGSGKT-------~~L~---~Ria~Li~--~-~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~ 75 (715)
T TIGR01075 20 LLVLAGAGSGKT-------RVLT---HRIAWLLS--V-ENASPHSIMAVTFTNKAAAEMRHRIGALLGT 75 (715)
T ss_pred EEEEecCCCCHH-------HHHH---HHHHHHHH--c-CCCCHHHeEeeeccHHHHHHHHHHHHHHhcc
Confidence 557799999999 1111 11112111 1 1122335899999999999999999877653
No 288
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=37.51 E-value=12 Score=43.50 Aligned_cols=11 Identities=18% Similarity=0.157 Sum_probs=9.7
Q ss_pred hhccccCCcch
Q psy2470 205 RYIGQPEMGPL 215 (858)
Q Consensus 205 ~~~a~TGSGKT 215 (858)
-++|+||||||
T Consensus 262 LvTGPTGSGKT 272 (500)
T COG2804 262 LVTGPTGSGKT 272 (500)
T ss_pred EEeCCCCCCHH
Confidence 46899999999
No 289
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=37.31 E-value=22 Score=43.51 Aligned_cols=51 Identities=10% Similarity=0.025 Sum_probs=35.1
Q ss_pred cccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhC
Q psy2470 201 PYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMG 271 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g 271 (858)
+-++-++|+|||||| ..+.+|.++. + . ..++|+-|--|+....+..- +.+|
T Consensus 139 ~~hvlviApTgSGKg-----vg~VIPnLL~---~----~-------gS~VV~DpKGE~~~~Ta~~R-~~~G 189 (670)
T PRK13850 139 QPHSLVVAPTRAGKG-----VGVVIPTLLT---F----K-------GSVIALDVKGELFELTSRAR-KASG 189 (670)
T ss_pred CceEEEEecCCCCce-----eeehHhHHhc---C----C-------CCEEEEeCCchHHHHHHHHH-HhCC
Confidence 335677999999999 7788886551 1 0 14799999998876665433 3344
No 290
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=36.76 E-value=38 Score=40.88 Aligned_cols=54 Identities=9% Similarity=0.033 Sum_probs=30.5
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHH
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTE 269 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e 269 (858)
.-++|.+||||| +.+-.++. .+.......+ ...+++.+||--||..+.+.+...
T Consensus 163 ~vitGgpGTGKT-------t~v~~ll~---~l~~~~~~~~--~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 163 SLITGGPGTGKT-------TTVARLLL---ALVKQSPKQG--KLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred EEEEcCCCCCHH-------HHHHHHHH---HHHHhccccC--CCcEEEECCcHHHHHHHHHHHHhh
Confidence 446899999999 22211111 1100000011 124788999999998887766443
No 291
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.45 E-value=54 Score=39.07 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=20.7
Q ss_pred HHHHhcCCCCccccchhccccCCcch
Q psy2470 190 RVRRALDFPDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~a~TGSGKT 215 (858)
...++......++.+-..|++|+|||
T Consensus 27 ~L~~~i~~~~~~ha~Lf~Gp~G~GKT 52 (527)
T PRK14969 27 ALTNALEQQRLHHAYLFTGTRGVGKT 52 (527)
T ss_pred HHHHHHHcCCCCEEEEEECCCCCCHH
Confidence 45556666677888888999999999
No 292
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=36.35 E-value=16 Score=44.84 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=35.5
Q ss_pred cchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhC
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMG 271 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g 271 (858)
.+.++|-.||||| ..+- ....++-. +. |.+...+|+++.|+-+|.++-+|+.+.+|
T Consensus 16 ~~~V~Ag~GSGKT-------~~L~---~ri~~ll~-~~--~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 16 PCLVLAGAGSGKT-------RVIT---NKIAYLIQ-NC--GYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CEEEEecCCCCHH-------HHHH---HHHHHHHH-hc--CCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 3567899999999 1111 11111111 11 11233589999999999999999987766
No 293
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=36.26 E-value=6.5 Score=44.36 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=26.9
Q ss_pred hhHHHHHHHhcCC-CCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCC
Q psy2470 185 QPLLLRVRRALDF-PDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEM 240 (858)
Q Consensus 185 ~~~~~~~~~~~~~-~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~ 240 (858)
..+...++..+.. ...|..+.++|++||||+ .+...++-++..+.
T Consensus 18 ~~~~s~i~~~l~~~~~~~l~IaV~G~sGsGKS-----------SfINalrGl~~~d~ 63 (376)
T PF05049_consen 18 QEVVSKIREALKDIDNAPLNIAVTGESGSGKS-----------SFINALRGLGHEDE 63 (376)
T ss_dssp HHHHHHHHHHHHHHHH--EEEEEEESTTSSHH-----------HHHHHHTT--TTST
T ss_pred HHHHHHHHHHHHHhhcCceEEEEECCCCCCHH-----------HHHHHHhCCCCCCc
Confidence 3444555666533 345899999999999998 45555555555443
No 294
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=36.25 E-value=12 Score=39.17 Aligned_cols=12 Identities=17% Similarity=0.338 Sum_probs=10.3
Q ss_pred chhccccCCcch
Q psy2470 204 LRYIGQPEMGPL 215 (858)
Q Consensus 204 ~~~~a~TGSGKT 215 (858)
+.|+|++|||||
T Consensus 34 vaI~GpSGSGKS 45 (226)
T COG1136 34 VAIVGPSGSGKS 45 (226)
T ss_pred EEEECCCCCCHH
Confidence 347899999998
No 295
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.91 E-value=19 Score=44.64 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHH
Q psy2470 187 LLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEF 266 (858)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v 266 (858)
.+..+-++++... ++-+-|||||||| +|.+.|.+.|.... + + ...++..+.|.---.|+.+++
T Consensus 18 ~m~~v~~~l~~~~---~~llEsPTGtGKT-----lslL~~aL~~~~~~---~-----~-~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 18 YMRDLKRSLDRGD---EAILEMPSGTGKT-----ISLLSLILAYQQEK---P-----E-VRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred HHHHHHHHhccCC---ceEEeCCCCCCcc-----HHHHHHHHHHHHhc---c-----c-cccEEEEcccchHHHHHHHHH
Confidence 4445555665443 3344699999999 66666666654221 1 1 123566667766656666666
Q ss_pred HH
Q psy2470 267 LT 268 (858)
Q Consensus 267 ~~ 268 (858)
.+
T Consensus 81 k~ 82 (705)
T TIGR00604 81 RK 82 (705)
T ss_pred Hh
Confidence 43
No 296
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=35.53 E-value=61 Score=40.07 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=21.4
Q ss_pred HHHHHhcCCCCccccchhccccCCcch
Q psy2470 189 LRVRRALDFPDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~a~TGSGKT 215 (858)
..+++.+.....++.+-..|+.|+|||
T Consensus 26 ~~L~~aL~~gRL~HAyLFtGPpGvGKT 52 (830)
T PRK07003 26 RALTHALDGGRLHHAYLFTGTRGVGKT 52 (830)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHH
Confidence 345566677777888778999999999
No 297
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=35.29 E-value=16 Score=37.75 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=21.2
Q ss_pred cccchhccccCCcchhhhhhhhcCcCcccc
Q psy2470 201 PYQLRYIGQPEMGPLLLRVRRALDFPDMPY 230 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~ 230 (858)
.+++-+.|++|||||...-+.+..+|.+..
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lLP~l~~ 51 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLLPPLTE 51 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS--CCE
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhCCCCch
Confidence 468889999999999888888888887764
No 298
>KOG0389|consensus
Probab=35.17 E-value=93 Score=38.19 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=45.6
Q ss_pred hCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCC--cEEEEEec-Cccccc
Q psy2470 415 SMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRA--MRKIVIAT-NIAETS 488 (858)
Q Consensus 415 ~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g--~~kVlvAT-dvAerg 488 (858)
...+|+-||-||+-- ++.+-+.+.+. .|.+.|.++||. |+||..+=..+..+ ...|||+| ++|+.+
T Consensus 445 ~g~~gpHLVVvPsST-leNWlrEf~kw-----CPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la~~~ 513 (941)
T KOG0389|consen 445 IGNPGPHLVVVPSST-LENWLREFAKW-----CPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLAASS 513 (941)
T ss_pred cCCCCCcEEEecchh-HHHHHHHHHHh-----CCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeecccCC
Confidence 334788999999753 55555555555 468999999997 47776664444433 78899988 555543
No 299
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=34.92 E-value=70 Score=38.37 Aligned_cols=59 Identities=12% Similarity=0.128 Sum_probs=50.5
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
+|-.||--|-..=.+.=.+.|+.. |+.+..|+|.++.++|..++.....|.+|+|.-+|
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~-------Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAA-------GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHc-------CceeehhhcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 678899988877666666677766 89999999999999999999999999999986654
No 300
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=34.65 E-value=1.6e+02 Score=32.56 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=14.9
Q ss_pred cccchhccccCCcchhhhhhhh
Q psy2470 201 PYQLRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~~a 222 (858)
|--+.++|++|+|||.....+|
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA 135 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLA 135 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4456678999999993333333
No 301
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=34.62 E-value=14 Score=37.83 Aligned_cols=11 Identities=18% Similarity=0.132 Sum_probs=9.6
Q ss_pred hhccccCCcch
Q psy2470 205 RYIGQPEMGPL 215 (858)
Q Consensus 205 ~~~a~TGSGKT 215 (858)
-+.|+||||||
T Consensus 5 lI~GptGSGKT 15 (198)
T cd01131 5 LVTGPTGSGKS 15 (198)
T ss_pred EEECCCCCCHH
Confidence 36799999999
No 302
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.57 E-value=59 Score=38.56 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=22.0
Q ss_pred HHHHHhcCCCCccccchhccccCCcch
Q psy2470 189 LRVRRALDFPDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~a~TGSGKT 215 (858)
...+.++.....|+.+-..|+.|+|||
T Consensus 26 ~~L~~~~~~~~l~ha~Lf~Gp~G~GKT 52 (509)
T PRK14958 26 RALSNALDQQYLHHAYLFTGTRGVGKT 52 (509)
T ss_pred HHHHHHHHhCCCCeeEEEECCCCCCHH
Confidence 446666777778888888999999999
No 303
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=34.03 E-value=24 Score=35.50 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=16.3
Q ss_pred HhcCCCCccccchhccccCCcch
Q psy2470 193 RALDFPDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 193 ~~~~~~~~~~~~~~~a~TGSGKT 215 (858)
.+..|....-.+-+.|++|+|||
T Consensus 39 ~~~~~~~~~~~l~l~G~~G~GKT 61 (178)
T PF01695_consen 39 AALEFIENGENLILYGPPGTGKT 61 (178)
T ss_dssp HHH-S-SC--EEEEEESTTSSHH
T ss_pred hcCCCcccCeEEEEEhhHhHHHH
Confidence 55677666778889999999999
No 304
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=33.17 E-value=24 Score=38.39 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=13.3
Q ss_pred ccccchhccccCCcch
Q psy2470 200 MPYQLRYIGQPEMGPL 215 (858)
Q Consensus 200 ~~~~~~~~a~TGSGKT 215 (858)
+...+-+.|++|||||
T Consensus 57 ~~~~vll~G~pGTGKT 72 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKT 72 (284)
T ss_pred CCceEEEEcCCCCCHH
Confidence 3456778899999999
No 305
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=33.15 E-value=18 Score=39.83 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=16.4
Q ss_pred cchhccccCCcchhhhhhhhcCc
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDF 225 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~l 225 (858)
-+-++|+||||||.....+|-.+
T Consensus 6 ~i~i~GptgsGKt~la~~la~~~ 28 (307)
T PRK00091 6 VIVIVGPTASGKTALAIELAKRL 28 (307)
T ss_pred EEEEECCCCcCHHHHHHHHHHhC
Confidence 45678999999996555555443
No 306
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=32.96 E-value=14 Score=34.30 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=8.8
Q ss_pred hhccccCCcch
Q psy2470 205 RYIGQPEMGPL 215 (858)
Q Consensus 205 ~~~a~TGSGKT 215 (858)
-+.|++|||||
T Consensus 8 ~i~G~~G~GKT 18 (131)
T PF13401_consen 8 VISGPPGSGKT 18 (131)
T ss_dssp EEEE-TTSSHH
T ss_pred EEEcCCCCCHH
Confidence 46799999999
No 307
>PRK06547 hypothetical protein; Provisional
Probab=32.54 E-value=30 Score=34.69 Aligned_cols=31 Identities=16% Similarity=-0.014 Sum_probs=20.4
Q ss_pred HHHhcCCCCccccchhccccCCcchhhhhhhh
Q psy2470 191 VRRALDFPDMPYQLRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 191 ~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a 222 (858)
+.+++. ...+.-+.|.|.+|||||...-.+|
T Consensus 6 ~~~~~~-~~~~~~i~i~G~~GsGKTt~a~~l~ 36 (172)
T PRK06547 6 IAARLC-GGGMITVLIDGRSGSGKTTLAGALA 36 (172)
T ss_pred HHHHhh-cCCCEEEEEECCCCCCHHHHHHHHH
Confidence 444444 3446677788999999995444444
No 308
>KOG0350|consensus
Probab=32.53 E-value=1.1e+02 Score=35.74 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=53.8
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHH-HHHHhcCCCCCCcEEEEEecCc-------ccccCC
Q psy2470 419 GDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNN-EQIKVFRPTPRAMRKIVIATNI-------AETSIT 490 (858)
Q Consensus 419 g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~-~r~~v~~~f~~g~~kVlvATdv-------Aergld 490 (858)
=+++|-+|+++-+..++..+.+... ..|+.|+.+-|.-+-+ |..+.....+..++.|||||+= +--|++
T Consensus 216 LRavVivPtr~L~~QV~~~f~~~~~---~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~ 292 (620)
T KOG0350|consen 216 LRAVVIVPTRELALQVYDTFKRLNS---GTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFD 292 (620)
T ss_pred eEEEEEeeHHHHHHHHHHHHHHhcc---CCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcc
Confidence 4689999999999999999986633 3488899888876654 4445555566667899999971 134555
Q ss_pred CCCeeE
Q psy2470 491 IPGIVY 496 (858)
Q Consensus 491 Ip~V~~ 496 (858)
+...+|
T Consensus 293 Lk~Lrf 298 (620)
T KOG0350|consen 293 LKHLRF 298 (620)
T ss_pred hhhceE
Confidence 555554
No 309
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=32.50 E-value=22 Score=36.08 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=19.4
Q ss_pred chhccccCCcc-hhhhhhhhcCcCcc
Q psy2470 204 LRYIGQPEMGP-LLLRVRRALDFPDM 228 (858)
Q Consensus 204 ~~~~a~TGSGK-T~~~~~~a~~lP~~ 228 (858)
..|+|+.|||| |+..+.+-|..|+.
T Consensus 28 vAi~GpSGaGKSTLLnLIAGF~~P~~ 53 (231)
T COG3840 28 VAILGPSGAGKSTLLNLIAGFETPAS 53 (231)
T ss_pred EEEECCCCccHHHHHHHHHhccCCCC
Confidence 45789999999 56667777888854
No 310
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=32.49 E-value=21 Score=35.45 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=13.2
Q ss_pred chhccccCCcchhhhhhhh
Q psy2470 204 LRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a 222 (858)
+.|.|++|||||.+...+|
T Consensus 3 ItIsG~pGsG~TTva~~lA 21 (179)
T COG1102 3 ITISGLPGSGKTTVARELA 21 (179)
T ss_pred EEeccCCCCChhHHHHHHH
Confidence 3466999999994444444
No 311
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=32.35 E-value=17 Score=33.83 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=11.0
Q ss_pred cchhccccCCcch
Q psy2470 203 QLRYIGQPEMGPL 215 (858)
Q Consensus 203 ~~~~~a~TGSGKT 215 (858)
.+-++|++|+|||
T Consensus 21 ~v~i~G~~G~GKT 33 (151)
T cd00009 21 NLLLYGPPGTGKT 33 (151)
T ss_pred eEEEECCCCCCHH
Confidence 3557899999999
No 312
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=32.25 E-value=1.1e+02 Score=32.34 Aligned_cols=78 Identities=10% Similarity=0.112 Sum_probs=50.1
Q ss_pred ceEEEeccCCCCHHHHHHhcCCC-CCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhH
Q psy2470 449 KLLILPMHGSLPNNEQIKVFRPT-PRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASA 527 (858)
Q Consensus 449 ~~~v~~LHg~l~q~~r~~v~~~f-~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~ 527 (858)
++.+..+.|+-+.+. .-+..- ..|...|+|-=|..+||+|++|..... =.|. +-..++.
T Consensus 110 ~~~v~~vNS~~~~~~--ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsY----------f~R~--------s~~~DTL 169 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS--LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSY----------FLRN--------SKQYDTL 169 (239)
T ss_pred CceEEEEeCCCcccc--ccccccccCCceEEEECCccccCceeECCcEEEE----------ecCC--------CchHHHH
Confidence 488888898766654 122221 113489999999999999999976443 2221 2255677
Q ss_pred HHhhcccC-CCCCceEEEeh
Q psy2470 528 VQRAGRAG-RVRSGHVYRKN 546 (858)
Q Consensus 528 ~qR~GRaG-R~g~G~~~rL~ 546 (858)
.||.=--| |.|-.-..|+|
T Consensus 170 ~QmgRwFGYR~gY~dl~Ri~ 189 (239)
T PF10593_consen 170 MQMGRWFGYRPGYEDLCRIY 189 (239)
T ss_pred HHHhhcccCCcccccceEEe
Confidence 88865556 44434556888
No 313
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=32.21 E-value=1.4e+02 Score=36.51 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=49.2
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSIT 490 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergld 490 (858)
+.+++|-.||.+=+...++.+...... .|+++..+.|++++++|..... ..|+++|| .|-|.|
T Consensus 144 G~~v~VvTptreLA~qdae~~~~l~~~---lGlsv~~i~gg~~~~~r~~~y~------~dIvygT~-~e~~FD 206 (656)
T PRK12898 144 GLPVHVITVNDYLAERDAELMRPLYEA---LGLTVGCVVEDQSPDERRAAYG------ADITYCTN-KELVFD 206 (656)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHhh---cCCEEEEEeCCCCHHHHHHHcC------CCEEEECC-Cchhhh
Confidence 567999999999888888888754322 2899999999999988877664 37999998 555555
No 314
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=31.96 E-value=24 Score=42.81 Aligned_cols=52 Identities=10% Similarity=-0.029 Sum_probs=30.5
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHH
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLT 268 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~ 268 (858)
.-|+|.+||||| +.+-.++.. +.+.. . .....+.+.+||.-+|..+.+.+..
T Consensus 170 ~vItGgpGTGKT-------t~v~~ll~~---l~~~~--~-~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 170 SVISGGPGTGKT-------TTVAKLLAA---LIQLA--D-GERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred EEEEeCCCCCHH-------HHHHHHHHH---HHHhc--C-CCCcEEEEECCcHHHHHHHHHHHHh
Confidence 456899999999 222111111 10000 0 1123578899999999888877654
No 315
>PRK08233 hypothetical protein; Provisional
Probab=31.85 E-value=20 Score=35.51 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=16.8
Q ss_pred cchhccccCCcchhhhhhhhcCcC
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFP 226 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP 226 (858)
-+.|.|.+|||||...-.++-.++
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 355779999999966655554444
No 316
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=31.81 E-value=33 Score=41.97 Aligned_cols=75 Identities=19% Similarity=0.220 Sum_probs=43.3
Q ss_pred chhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccch
Q psy2470 176 CFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSI 255 (858)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~Pt 255 (858)
.|...++|...+ ......+..+.. .|+ +.|-|||||| |.+-. .+. ...+++||++|.
T Consensus 7 ~~~~~~~Q~~ai-~~l~~~~~~~~~-~~~-l~Gvtgs~kt-------~~~a~------~~~-------~~~~p~Lvi~~n 63 (655)
T TIGR00631 7 PFQPAGDQPKAI-AKLVEGLTDGEK-HQT-LLGVTGSGKT-------FTMAN------VIA-------QVNRPTLVIAHN 63 (655)
T ss_pred CCCCChHHHHHH-HHHHHhhhcCCC-cEE-EECCCCcHHH-------HHHHH------HHH-------HhCCCEEEEECC
Confidence 344444444323 334444433321 233 6799999999 11110 110 122468999999
Q ss_pred HHHHHHHHHHHHHHhCCc
Q psy2470 256 DVACSCTVVEFLTEMGCR 273 (858)
Q Consensus 256 R~la~qva~~v~~e~g~~ 273 (858)
..+|.|++..+..-++.+
T Consensus 64 ~~~A~ql~~el~~f~p~~ 81 (655)
T TIGR00631 64 KTLAAQLYNEFKEFFPEN 81 (655)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999886666543
No 317
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=31.69 E-value=32 Score=40.86 Aligned_cols=56 Identities=25% Similarity=0.286 Sum_probs=32.7
Q ss_pred chhccccCCcchhhhh-hhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCC
Q psy2470 204 LRYIGQPEMGPLLLRV-RRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGC 272 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~-~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~ 272 (858)
+-+.|..|||||.+.+ |.|+++= +|-++.. ..++||+.|.|+...-+ .+|.=++|.
T Consensus 229 lVVQGaAGSGKTtiALHRvAyLlY------~~R~~l~------~k~vlvl~PN~vFleYi-s~VLPeLGe 285 (747)
T COG3973 229 LVVQGAAGSGKTTIALHRVAYLLY------GYRGPLQ------AKPVLVLGPNRVFLEYI-SRVLPELGE 285 (747)
T ss_pred EEEecCCCCCchhHHHHHHHHHHh------ccccccc------cCceEEEcCcHHHHHHH-HHhchhhcc
Confidence 3456999999993322 2444331 1212221 12489999999987666 345556663
No 318
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=31.41 E-value=1.7e+02 Score=39.38 Aligned_cols=78 Identities=22% Similarity=0.185 Sum_probs=55.8
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhc--------cCC-CCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCc----
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYH--------NQR-EDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNI---- 484 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~--------~~~-~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdv---- 484 (858)
..++|+..|+++=+....+.|+.-. ... ...++.+..+||+.++++|.+.++.. ..|||+|+=
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~p----pdILVTTPEsL~~ 112 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNP----PDILITTPESLYL 112 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcCC----CCEEEecHHHHHH
Confidence 3579999999998888887775310 010 12478999999999999998877643 369999983
Q ss_pred --cccc-CCCCCeeEEE-c
Q psy2470 485 --AETS-ITIPGIVYVI-D 499 (858)
Q Consensus 485 --Aerg-ldIp~V~~VI-d 499 (858)
-.+. -.+.+|++|| |
T Consensus 113 LLtsk~r~~L~~Vr~VIVD 131 (1490)
T PRK09751 113 MLTSRARETLRGVETVIID 131 (1490)
T ss_pred HHhhhhhhhhccCCEEEEe
Confidence 2222 2578888887 5
No 319
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=30.99 E-value=31 Score=34.83 Aligned_cols=122 Identities=11% Similarity=0.065 Sum_probs=48.9
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
++|.-|-||| .|..+-... ... .|. ..++|.+|+.+.+..+.+.+.+.+. . .||..
T Consensus 2 ltA~RGRGKS-----a~lGl~~a~-------l~~--~~~--~~I~vtAP~~~~~~~lf~~~~~~l~-~-------~~~~~ 57 (177)
T PF05127_consen 2 LTADRGRGKS-----AALGLAAAA-------LIQ--KGK--IRILVTAPSPENVQTLFEFAEKGLK-A-------LGYKE 57 (177)
T ss_dssp EEE-TTSSHH-----HHHHHCCCC-------SSS---------EEEE-SS--S-HHHHHCC-------------------
T ss_pred ccCCCCCCHH-----HHHHHHHHH-------HHH--hcC--ceEEEecCCHHHHHHHHHHHHhhcc-c-------ccccc
Confidence 5788999999 222221111 111 112 3579999999998888665433222 1 11111
Q ss_pred ec-------cceeecceeEEEeecCccccCCCccCCCcccEE---EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 286 RK-------GRMKILVSKIFKMSQGKPSDSGVEPISQSYLVE---LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 286 r~-------~~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl---R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
.. .........|.|..|.-+....... ++.+| -++. ..+++.+. .....++
T Consensus 58 ~~~~~~~~~~~~~~~~~~i~f~~Pd~l~~~~~~~---DlliVDEAAaIp--------~p~L~~ll--------~~~~~vv 118 (177)
T PF05127_consen 58 EKKKRIGQIIKLRFNKQRIEFVAPDELLAEKPQA---DLLIVDEAAAIP--------LPLLKQLL--------RRFPRVV 118 (177)
T ss_dssp ---------------CCC--B--HHHHCCT-------SCEEECTGGGS---------HHHHHHHH--------CCSSEEE
T ss_pred ccccccccccccccccceEEEECCHHHHhCcCCC---CEEEEechhcCC--------HHHHHHHH--------hhCCEEE
Confidence 00 0001124567788887776622111 33343 3344 66666665 2334578
Q ss_pred Eeccc-----CHHHHHHHhh
Q psy2470 356 SSATV-----DAEEICQFYN 370 (858)
Q Consensus 356 ~SAT~-----~~~~~~~~~~ 370 (858)
||.|+ ...-|+-.|.
T Consensus 119 ~stTi~GYEGtGRgF~lkf~ 138 (177)
T PF05127_consen 119 FSTTIHGYEGTGRGFSLKFL 138 (177)
T ss_dssp EEEEBSSTTBB-HHHHHHHH
T ss_pred EEeeccccccCCceeeeehh
Confidence 88898 3445654443
No 320
>PF12846 AAA_10: AAA-like domain
Probab=30.10 E-value=18 Score=38.89 Aligned_cols=13 Identities=15% Similarity=0.271 Sum_probs=11.2
Q ss_pred cchhccccCCcch
Q psy2470 203 QLRYIGQPEMGPL 215 (858)
Q Consensus 203 ~~~~~a~TGSGKT 215 (858)
+.-|+|+||||||
T Consensus 3 h~~i~G~tGsGKT 15 (304)
T PF12846_consen 3 HTLILGKTGSGKT 15 (304)
T ss_pred eEEEECCCCCcHH
Confidence 4567899999999
No 321
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=29.95 E-value=38 Score=38.00 Aligned_cols=50 Identities=8% Similarity=0.079 Sum_probs=30.3
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHH
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTE 269 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e 269 (858)
-|.|.+|||||++.+.+|..+ ... .....++.+++...+...+.+.+++.
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l----------~~~-----~~~~~~~~l~~n~~l~~~l~~~l~~~ 54 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKEL----------QNS-----EEGKKVLYLCGNHPLRNKLREQLAKK 54 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHh----------hcc-----ccCCceEEEEecchHHHHHHHHHhhh
Confidence 367999999996555555444 001 11223577777777776666666544
No 322
>PRK07261 topology modulation protein; Provisional
Probab=29.55 E-value=23 Score=35.28 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=13.0
Q ss_pred hhccccCCcchhhhhhhh
Q psy2470 205 RYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a 222 (858)
-|+|.+|||||...-.++
T Consensus 4 ~i~G~~GsGKSTla~~l~ 21 (171)
T PRK07261 4 AIIGYSGSGKSTLARKLS 21 (171)
T ss_pred EEEcCCCCCHHHHHHHHH
Confidence 468999999985554443
No 323
>PLN02748 tRNA dimethylallyltransferase
Probab=29.51 E-value=22 Score=41.44 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=19.8
Q ss_pred cccchhccccCCcchhhhhhhhcCcC
Q psy2470 201 PYQLRYIGQPEMGPLLLRVRRALDFP 226 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~~a~~lP 226 (858)
+.-+-|+|+||||||.+++.+|-.++
T Consensus 22 ~~~i~i~GptgsGKs~la~~la~~~~ 47 (468)
T PLN02748 22 AKVVVVMGPTGSGKSKLAVDLASHFP 47 (468)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 33567789999999977777776554
No 324
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=29.42 E-value=20 Score=38.03 Aligned_cols=15 Identities=27% Similarity=0.651 Sum_probs=13.1
Q ss_pred cccchhccccCCcch
Q psy2470 201 PYQLRYIGQPEMGPL 215 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT 215 (858)
|..+.++|++|||||
T Consensus 13 ~fr~viIG~sGSGKT 27 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKT 27 (241)
T ss_pred CceEEEECCCCCCHH
Confidence 566778999999999
No 325
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=29.41 E-value=31 Score=34.11 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=14.0
Q ss_pred HHHHHHhc--CCCCccccchhccccCCcch
Q psy2470 188 LLRVRRAL--DFPDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 188 ~~~~~~~~--~~~~~~~~~~~~a~TGSGKT 215 (858)
.+++...+ .....+..+-++|++|+|||
T Consensus 9 ~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT 38 (185)
T PF13191_consen 9 IERLRDLLDAAQSGSPRNLLLTGESGSGKT 38 (185)
T ss_dssp HHHHHHTTGGTSS-----EEE-B-TTSSHH
T ss_pred HHHHHHHHHHHHcCCCcEEEEECCCCCCHH
Confidence 34455555 22333566778899999999
No 326
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=29.28 E-value=19 Score=33.20 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=11.9
Q ss_pred hccccCCcchhhhhhhh
Q psy2470 206 YIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a 222 (858)
+.|.+|||||.+.-.++
T Consensus 3 i~G~~GsGKtTia~~L~ 19 (129)
T PF13238_consen 3 ISGIPGSGKTTIAKELA 19 (129)
T ss_dssp EEESTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 57999999994444433
No 327
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=29.15 E-value=1.6e+02 Score=37.00 Aligned_cols=61 Identities=15% Similarity=0.258 Sum_probs=43.4
Q ss_pred CCCEEEEc-CCHHHHHHHHHHHHHhcc--------------------CCCCcceEEEeccCCCCHHHHHHhcCCCCCCcE
Q psy2470 418 VGDILAFV-IGLEQIEHIIGILKQYHN--------------------QREDLKLLILPMHGSLPNNEQIKVFRPTPRAMR 476 (858)
Q Consensus 418 ~g~iLVFl-~t~~~i~~l~~~L~~~~~--------------------~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~ 476 (858)
..+.|||+ |+++-++.+++.+++... ..+..++.+..++|+.+.+.+.+.+.. ..
T Consensus 61 ~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~----~p 136 (844)
T TIGR02621 61 VPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPH----RP 136 (844)
T ss_pred ccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCC----CC
Confidence 34578876 998888888877764321 011336889999999998888766642 34
Q ss_pred EEEEec
Q psy2470 477 KIVIAT 482 (858)
Q Consensus 477 kVlvAT 482 (858)
.|||+|
T Consensus 137 ~IIVgT 142 (844)
T TIGR02621 137 AVIVGT 142 (844)
T ss_pred cEEEEC
Confidence 799999
No 328
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=29.02 E-value=26 Score=36.28 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=10.5
Q ss_pred hccccCCcchhhhhhhh
Q psy2470 206 YIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a 222 (858)
+.|+.|||||...+..|
T Consensus 24 ~~G~AGTGKT~LA~a~A 40 (205)
T PF02562_consen 24 VNGPAGTGKTFLALAAA 40 (205)
T ss_dssp EE--TTSSTTHHHHHHH
T ss_pred EECCCCCcHHHHHHHHH
Confidence 46999999995554444
No 329
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=28.96 E-value=38 Score=41.40 Aligned_cols=51 Identities=18% Similarity=0.181 Sum_probs=36.3
Q ss_pred cccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhC
Q psy2470 201 PYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMG 271 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g 271 (858)
+-++-++|+|||||| ..+.+|.++. + + ..++|.-|..|+....+.. .+.+|
T Consensus 144 ~~hvLviApTrSGKg-----vg~VIPnLL~---~---~--------~S~VV~D~KGEl~~~Ta~~-R~~~G 194 (663)
T PRK13876 144 PEHVLCFAPTRSGKG-----VGLVVPTLLT---W---P--------GSAIVHDIKGENWQLTAGF-RARFG 194 (663)
T ss_pred CceEEEEecCCCCcc-----eeEehhhHHh---C---C--------CCEEEEeCcchHHHHHHHH-HHhCC
Confidence 557778999999999 8888886651 1 0 1468999999987766553 34444
No 330
>KOG0340|consensus
Probab=28.74 E-value=1.1e+02 Score=34.23 Aligned_cols=56 Identities=18% Similarity=0.110 Sum_probs=45.3
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 421 ILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 421 iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
.|||.||++-+-.+++++.... ...++++..+.|+++.-.|...+.+- -.|||||+
T Consensus 78 alvlTPTrELA~QiaEQF~alG---k~l~lK~~vivGG~d~i~qa~~L~~r----PHvVvatP 133 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFIALG---KLLNLKVSVIVGGTDMIMQAAILSDR----PHVVVATP 133 (442)
T ss_pred EEEecchHHHHHHHHHHHHHhc---ccccceEEEEEccHHHhhhhhhcccC----CCeEecCc
Confidence 6999999999999998887542 23488999999999999988888643 36888886
No 331
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.56 E-value=79 Score=38.53 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=22.0
Q ss_pred HHHHHhcCCCCccccchhccccCCcch
Q psy2470 189 LRVRRALDFPDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~a~TGSGKT 215 (858)
..+++.+....+++.+-.+|+.|+|||
T Consensus 26 ~~L~~al~~gRLpHA~LFtGP~GvGKT 52 (700)
T PRK12323 26 RALTHALEQQRLHHAYLFTGTRGVGKT 52 (700)
T ss_pred HHHHHHHHhCCCceEEEEECCCCCCHH
Confidence 345667777778888888999999999
No 332
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=28.19 E-value=21 Score=33.02 Aligned_cols=10 Identities=30% Similarity=0.504 Sum_probs=9.0
Q ss_pred hccccCCcch
Q psy2470 206 YIGQPEMGPL 215 (858)
Q Consensus 206 ~~a~TGSGKT 215 (858)
+.|++|||||
T Consensus 3 l~G~~G~GKT 12 (132)
T PF00004_consen 3 LHGPPGTGKT 12 (132)
T ss_dssp EESSTTSSHH
T ss_pred EECcCCCCee
Confidence 5799999999
No 333
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=28.05 E-value=11 Score=40.60 Aligned_cols=52 Identities=13% Similarity=0.020 Sum_probs=30.6
Q ss_pred CEEEccchHHHHHHHHHHHH---HHhCCcCccEeeeeeEEEeccceee----cceeEEEeecCccc
Q psy2470 248 PTIVRSSIDVACSCTVVEFL---TEMGCRMDFEYISRGYMFRKGRMKI----LVSKIFKMSQGKPS 306 (858)
Q Consensus 248 ~~LVl~PtR~la~qva~~v~---~e~g~~~g~~~~~vG~~vr~~~~~~----~~t~I~v~TpGrLl 306 (858)
.+=|++....||..-++.+. +.+|.. ||+......... =..+|+|+|.+-+.
T Consensus 120 ~V~vvT~NdyLA~RD~~~~~~~y~~LGls-------v~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~ 178 (266)
T PF07517_consen 120 GVHVVTSNDYLAKRDAEEMRPFYEFLGLS-------VGIITSDMSSEERREAYAADIVYGTNSEFG 178 (266)
T ss_dssp -EEEEESSHHHHHHHHHHHHHHHHHTT---------EEEEETTTEHHHHHHHHHSSEEEEEHHHHH
T ss_pred CcEEEeccHHHhhccHHHHHHHHHHhhhc-------cccCccccCHHHHHHHHhCcccccccchhh
Confidence 35677888888877766554 345544 555444332211 13689999998765
No 334
>CHL00181 cbbX CbbX; Provisional
Probab=28.04 E-value=32 Score=37.49 Aligned_cols=26 Identities=23% Similarity=0.565 Sum_probs=17.1
Q ss_pred HHHHhcCCC--CccccchhccccCCcch
Q psy2470 190 RVRRALDFP--DMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 190 ~~~~~~~~~--~~~~~~~~~a~TGSGKT 215 (858)
+.|+..+.. ..+.++-..|++|||||
T Consensus 46 ~~~~~~g~~~~~~~~~ill~G~pGtGKT 73 (287)
T CHL00181 46 RLRKNLGLTSSNPGLHMSFTGSPGTGKT 73 (287)
T ss_pred HHHHHcCCCCCCCCceEEEECCCCCCHH
Confidence 344444432 23556777899999999
No 335
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=27.81 E-value=25 Score=34.02 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=9.6
Q ss_pred hccccCCcchhh
Q psy2470 206 YIGQPEMGPLLL 217 (858)
Q Consensus 206 ~~a~TGSGKT~~ 217 (858)
++|++|||||..
T Consensus 1 i~G~PgsGK~t~ 12 (151)
T PF00406_consen 1 ILGPPGSGKGTQ 12 (151)
T ss_dssp EEESTTSSHHHH
T ss_pred CcCCCCCChHHH
Confidence 479999999933
No 336
>KOG0701|consensus
Probab=27.73 E-value=30 Score=45.94 Aligned_cols=98 Identities=23% Similarity=0.279 Sum_probs=71.6
Q ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCC-C-------CHHHHHHhcCCCCCCcEEEEEecCcccccCCC
Q psy2470 420 DILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGS-L-------PNNEQIKVFRPTPRAMRKIVIATNIAETSITI 491 (858)
Q Consensus 420 ~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~-l-------~q~~r~~v~~~f~~g~~kVlvATdvAergldI 491 (858)
..++|++-...+-...+.+++.... .+++.+. -.|. . .+-.|..++..|.....++|++|-+++=|+|+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g-~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~ 370 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSN--DPLFVTG-ASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDV 370 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhcc--Ccceeec-cccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcch
Confidence 3589999999888888888855332 2333222 1111 1 11235677888888899999999999999999
Q ss_pred CCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC
Q psy2470 492 PGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR 538 (858)
Q Consensus 492 p~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g 538 (858)
+..+.||- ++ .|....+|+|+.||+-+..
T Consensus 371 ~~~~~~~~--------~~----------~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 371 PKCNLVVL--------FD----------APTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhhhhee--------cc----------CcchHHHHHHhhcccccch
Confidence 99998886 45 5778899999999987743
No 337
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=27.64 E-value=28 Score=35.10 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=13.8
Q ss_pred chhccccCCcchhhhhhhh
Q psy2470 204 LRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a 222 (858)
+-++|++|||||...-.+|
T Consensus 3 iiilG~pGaGK~T~A~~La 21 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLA 21 (178)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3478999999985555544
No 338
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=27.54 E-value=22 Score=40.17 Aligned_cols=12 Identities=17% Similarity=0.155 Sum_probs=10.6
Q ss_pred chhccccCCcch
Q psy2470 204 LRYIGQPEMGPL 215 (858)
Q Consensus 204 ~~~~a~TGSGKT 215 (858)
+-++|+||||||
T Consensus 137 ilI~GpTGSGKT 148 (358)
T TIGR02524 137 VFITGATGSGKS 148 (358)
T ss_pred EEEECCCCCCHH
Confidence 557899999999
No 339
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=27.48 E-value=2e+02 Score=35.62 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=47.5
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCc
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNI 484 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdv 484 (858)
+.++.|-+||..=+..-++.+...... -|+++..+.|+++.++|...+. ..|+++|+-
T Consensus 97 G~~V~VvTpt~~LA~qdae~~~~l~~~---LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 97 GKGVHVVTVNDYLAQRDAEWMGQVYRF---LGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhcc---CCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 457999999999888888887755332 3899999999999999888875 479999984
No 340
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=27.35 E-value=90 Score=37.83 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=21.3
Q ss_pred HHHHhcCCCCccccchhccccCCcch
Q psy2470 190 RVRRALDFPDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~a~TGSGKT 215 (858)
.+.+.+..+..|+++-.+|+.|+|||
T Consensus 35 ~L~~~~~~gri~ha~L~~Gp~GvGKT 60 (598)
T PRK09111 35 TLTNAFETGRIAQAFMLTGVRGVGKT 60 (598)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHH
Confidence 35556667777888999999999999
No 341
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=27.16 E-value=22 Score=35.86 Aligned_cols=13 Identities=15% Similarity=0.181 Sum_probs=11.0
Q ss_pred cchhccccCCcch
Q psy2470 203 QLRYIGQPEMGPL 215 (858)
Q Consensus 203 ~~~~~a~TGSGKT 215 (858)
.+.++|+||||||
T Consensus 27 ~i~I~G~tGSGKT 39 (186)
T cd01130 27 NILISGGTGSGKT 39 (186)
T ss_pred EEEEECCCCCCHH
Confidence 3567899999999
No 342
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=27.14 E-value=28 Score=33.04 Aligned_cols=18 Identities=17% Similarity=-0.007 Sum_probs=13.1
Q ss_pred hhccccCCcchhhhhhhh
Q psy2470 205 RYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a 222 (858)
.+.|++|||||.....+|
T Consensus 3 ~i~G~~GsGKst~a~~la 20 (147)
T cd02020 3 AIDGPAGSGKSTVAKLLA 20 (147)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 367999999995554444
No 343
>KOG0335|consensus
Probab=27.08 E-value=1.2e+02 Score=35.42 Aligned_cols=73 Identities=14% Similarity=0.199 Sum_probs=54.7
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----ccccc-CCCC
Q psy2470 419 GDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAETS-ITIP 492 (858)
Q Consensus 419 g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAerg-ldIp 492 (858)
..+||..||++-++.+.+.-++... ..++.+...||+.+-..+.+- -.+...|+|||+ +.++| |..+
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~---~s~~~~~~~ygg~~~~~q~~~----~~~gcdIlvaTpGrL~d~~e~g~i~l~ 225 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSY---LSGMKSVVVYGGTDLGAQLRF----IKRGCDILVATPGRLKDLIERGKISLD 225 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcc---cccceeeeeeCCcchhhhhhh----hccCccEEEecCchhhhhhhcceeehh
Confidence 5799999999999998888775532 237888899999655555433 235689999995 67777 7888
Q ss_pred CeeEEE
Q psy2470 493 GIVYVI 498 (858)
Q Consensus 493 ~V~~VI 498 (858)
++.|+|
T Consensus 226 ~~k~~v 231 (482)
T KOG0335|consen 226 NCKFLV 231 (482)
T ss_pred hCcEEE
Confidence 888766
No 344
>KOG1784|consensus
Probab=27.08 E-value=21 Score=31.34 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=16.0
Q ss_pred eEEeecccccccccchhccc
Q psy2470 21 VIMLDKVHERTIFTDILMEC 40 (858)
Q Consensus 21 ~~~~~~~~~~~~~~d~~~~~ 40 (858)
=++|||+|||..+++.-++.
T Consensus 35 Nlii~~~heRi~s~~~gv~q 54 (96)
T KOG1784|consen 35 NLIIDESHERIFSETEGVEQ 54 (96)
T ss_pred eeeehhhHhhhhhhhcchhh
Confidence 47999999999998865443
No 345
>PRK10536 hypothetical protein; Provisional
Probab=27.00 E-value=27 Score=37.38 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=13.9
Q ss_pred cchhccccCCcchhhhhhhh
Q psy2470 203 QLRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a 222 (858)
-+-++|++|||||...+..|
T Consensus 76 lV~i~G~aGTGKT~La~a~a 95 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKA 95 (262)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 34468999999994444444
No 346
>KOG0246|consensus
Probab=26.88 E-value=61 Score=38.10 Aligned_cols=16 Identities=13% Similarity=-0.058 Sum_probs=11.5
Q ss_pred HHHhcCccccCCCcch
Q psy2470 104 LLYSLGAMDVNGNLTK 119 (858)
Q Consensus 104 ~L~~l~ald~~~~lt~ 119 (858)
.....+|+++-+++++
T Consensus 137 ~~rks~~v~e~e~l~e 152 (676)
T KOG0246|consen 137 SARKSHAVKEVEKLQE 152 (676)
T ss_pred hhhhcccccchHHHHH
Confidence 5677788888777753
No 347
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=26.80 E-value=35 Score=42.40 Aligned_cols=55 Identities=9% Similarity=-0.023 Sum_probs=34.3
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhC
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMG 271 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g 271 (858)
+.++|-.|||||. .+- ....++-. +. |-....+|+++-|+-+|..+.+|+.+.+|
T Consensus 20 ~lV~AgaGSGKT~-------~l~---~ria~Li~-~~--~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 20 LLIMAGAGSGKTR-------VLT---HRIAHLIA-EK--NVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred EEEEeCCCCCHHH-------HHH---HHHHHHHH-cC--CCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 5577999999991 111 11111110 01 11223589999999999999999977655
No 348
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=26.70 E-value=22 Score=38.12 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=10.5
Q ss_pred chhccccCCcch
Q psy2470 204 LRYIGQPEMGPL 215 (858)
Q Consensus 204 ~~~~a~TGSGKT 215 (858)
+-++|+||||||
T Consensus 130 ili~G~tGSGKT 141 (270)
T PF00437_consen 130 ILISGPTGSGKT 141 (270)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCccccc
Confidence 557899999999
No 349
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=26.50 E-value=28 Score=37.95 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=15.4
Q ss_pred hhccccCCcchhhhhhhhcCcC
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFP 226 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP 226 (858)
-++|+||||||....++|-.++
T Consensus 3 ~i~G~t~~GKs~la~~l~~~~~ 24 (287)
T TIGR00174 3 FIMGPTAVGKSQLAIQLAKKLN 24 (287)
T ss_pred EEECCCCCCHHHHHHHHHHhCC
Confidence 3679999999965555554443
No 350
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=26.47 E-value=31 Score=36.95 Aligned_cols=15 Identities=20% Similarity=0.467 Sum_probs=12.9
Q ss_pred cccchhccccCCcch
Q psy2470 201 PYQLRYIGQPEMGPL 215 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT 215 (858)
+.++-+.|++|||||
T Consensus 42 ~~~vll~GppGtGKT 56 (261)
T TIGR02881 42 VLHMIFKGNPGTGKT 56 (261)
T ss_pred cceEEEEcCCCCCHH
Confidence 566778899999999
No 351
>KOG0336|consensus
Probab=26.42 E-value=1.9e+02 Score=32.99 Aligned_cols=73 Identities=26% Similarity=0.286 Sum_probs=51.2
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC------cccccCCC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN------IAETSITI 491 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd------vAergldI 491 (858)
.-.+||..||++-+..+.....+.. ..|+..+++||+-...+|...++ +...|++||+ .-.-.|++
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kys----yng~ksvc~ygggnR~eqie~lk----rgveiiiatPgrlndL~~~n~i~l 365 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYS----YNGLKSVCVYGGGNRNEQIEDLK----RGVEIIIATPGRLNDLQMDNVINL 365 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhh----hcCcceEEEecCCCchhHHHHHh----cCceEEeeCCchHhhhhhcCeeee
Confidence 3458999999876555444433321 13888999999988888877765 4578999997 23445677
Q ss_pred CCeeEEE
Q psy2470 492 PGIVYVI 498 (858)
Q Consensus 492 p~V~~VI 498 (858)
..|+|+|
T Consensus 366 ~siTYlV 372 (629)
T KOG0336|consen 366 ASITYLV 372 (629)
T ss_pred eeeEEEE
Confidence 7788776
No 352
>KOG1384|consensus
Probab=26.25 E-value=30 Score=38.06 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=21.1
Q ss_pred chhccccCCcchhhhhhhhcCcCccc
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMP 229 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~ 229 (858)
+.|.|.|||||+-+.|-+|..+|.-.
T Consensus 10 vvI~G~TGsGKSrLaVdLA~rf~~EI 35 (348)
T KOG1384|consen 10 VVIMGATGAGKSRLAVDLATRFPGEI 35 (348)
T ss_pred EEEecCCCCChhhhHHHHHHhCCcee
Confidence 34689999999988888998888443
No 353
>PHA02244 ATPase-like protein
Probab=26.17 E-value=42 Score=37.96 Aligned_cols=26 Identities=8% Similarity=0.027 Sum_probs=15.7
Q ss_pred HHHHHHHhcCCCCccccchhccccCCcch
Q psy2470 187 LLLRVRRALDFPDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~a~TGSGKT 215 (858)
...++.+.+.. ...+-+.|+||||||
T Consensus 108 ~~~ri~r~l~~---~~PVLL~GppGtGKT 133 (383)
T PHA02244 108 ETADIAKIVNA---NIPVFLKGGAGSGKN 133 (383)
T ss_pred HHHHHHHHHhc---CCCEEEECCCCCCHH
Confidence 33444444433 233455699999999
No 354
>PRK08118 topology modulation protein; Reviewed
Probab=26.05 E-value=30 Score=34.43 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=14.0
Q ss_pred chhccccCCcchhhhhhhh
Q psy2470 204 LRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a 222 (858)
+-|+|++|||||...-.++
T Consensus 4 I~I~G~~GsGKSTlak~L~ 22 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLG 22 (167)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4578999999995555444
No 355
>KOG1132|consensus
Probab=25.92 E-value=5.5e+02 Score=32.33 Aligned_cols=160 Identities=15% Similarity=0.225 Sum_probs=82.6
Q ss_pred ceEEEEeccc-CHHHHHHHhhcccC---CCCcEEE-------ec--C-eecceeEEEecCCccchHHHHHHHHHHHHhhC
Q psy2470 351 LKLIISSATV-DAEEICQFYNISAS---SNATILS-------VK--G-HLYPVSVYYSNDPVVNYVQGVVDTAIKIHESM 416 (858)
Q Consensus 351 ~q~il~SAT~-~~~~~~~~~~~~~~---~~~~~i~-------v~--g-~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~ 416 (858)
+-+++.|.|+ ....|+.-|+..-. .++.++. +- | ......--|......+|....-+.+.......
T Consensus 481 rsIiLtSGTLsP~~s~~~El~~~f~~~lEn~hii~~~qv~~~vv~~Gp~~~ql~sty~nr~~~ey~~~lg~~i~~v~rvV 560 (945)
T KOG1132|consen 481 RSIILTSGTLSPMDSFASELGLEFKIQLENPHIINKSQVWVGVVPKGPDGAQLDSTYGNRFTPEYLSELGEAILNVARVV 560 (945)
T ss_pred eeEEEecccccCchhHHHHhCCccceeeecchhccccceEEEeeccCCCccccccccccccCHHHHHHHHHHHHHHHhhc
Confidence 3578999999 66777776663100 0111110 00 0 00111112333333446666666666666666
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHh---ccCCCCcceEEEeccCCCCHHHH----HHhcCCCCCCcEEEEEecCcccccC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQY---HNQREDLKLLILPMHGSLPNNEQ----IKVFRPTPRAMRKIVIATNIAETSI 489 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~---~~~~~~~~~~v~~LHg~l~q~~r----~~v~~~f~~g~~kVlvATdvAergl 489 (858)
+.| +|+|+|+..-.+++....... ........+.+.|=-+.-=.+.. ..+..+-..|..-.-|+=-=++.|+
T Consensus 561 p~G-~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 561 PYG-LLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred ccc-eEEeccchHHHHHHHHHHHcchHHHHhhcccCceeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 556 999999998777775544321 00111123344443221111111 1222222345556667777778899
Q ss_pred CCCC--eeEEEcCCCccceeccCC
Q psy2470 490 TIPG--IVYVIDPGFVKARWFNPN 511 (858)
Q Consensus 490 dIp~--V~~VId~g~~k~~~yd~~ 511 (858)
|.-| -+.||=.|+|--+.-|++
T Consensus 640 DFsD~~~RaVI~tGlPyP~~~D~~ 663 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLPYPPVMDPR 663 (945)
T ss_pred CccccCCceeEEecCCCCCCCCHH
Confidence 9864 468899999876555543
No 356
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=25.77 E-value=26 Score=39.67 Aligned_cols=45 Identities=11% Similarity=0.178 Sum_probs=29.3
Q ss_pred cccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHH
Q psy2470 201 PYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCT 262 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qv 262 (858)
|..+-+.|+-||||| |.+-.+.. ++. .....+++++||..||..+
T Consensus 22 ~~~~fv~G~~GtGKs-------~l~~~i~~---~~~-------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 22 GLNFFVTGPAGTGKS-------FLIKAIID---YLR-------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CcEEEEEcCCCCChh-------HHHHHHHH---Hhc-------cccceEEEecchHHHHHhc
Confidence 566777899999999 33222221 111 1123479999999999877
No 357
>PLN03025 replication factor C subunit; Provisional
Probab=25.74 E-value=45 Score=36.83 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=18.1
Q ss_pred HHHHHhcCCCCccccchhccccCCcch
Q psy2470 189 LRVRRALDFPDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~a~TGSGKT 215 (858)
.+++.....+..|+ +-..|++|+|||
T Consensus 23 ~~L~~~~~~~~~~~-lll~Gp~G~GKT 48 (319)
T PLN03025 23 SRLQVIARDGNMPN-LILSGPPGTGKT 48 (319)
T ss_pred HHHHHHHhcCCCce-EEEECCCCCCHH
Confidence 34444455556665 557999999999
No 358
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=25.72 E-value=67 Score=31.10 Aligned_cols=79 Identities=20% Similarity=0.114 Sum_probs=42.0
Q ss_pred HHhcCCCCCCcE---EEEEecCc--ccccCCCCC--eeEEEcCCCccceeccCC----------CC-CCc--ceeeecCH
Q psy2470 465 IKVFRPTPRAMR---KIVIATNI--AETSITIPG--IVYVIDPGFVKARWFNPN----------TL-TNS--LVVVPISK 524 (858)
Q Consensus 465 ~~v~~~f~~g~~---kVlvATdv--AergldIp~--V~~VId~g~~k~~~yd~~----------~g-~~~--l~~~pis~ 524 (858)
.++++.|++... .|++++.= ..=|||+|| .+.||=.|+|-....|+. .+ ... ....|...
T Consensus 34 ~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 113 (142)
T smart00491 34 EELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFDAM 113 (142)
T ss_pred HHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 344444543222 58888874 566999998 456665577643222211 00 000 11123334
Q ss_pred hhHHHhhcccCCCCC--ceEE
Q psy2470 525 ASAVQRAGRAGRVRS--GHVY 543 (858)
Q Consensus 525 ~~~~qR~GRaGR~g~--G~~~ 543 (858)
-...|=+||.=|... |..+
T Consensus 114 ~~~~Qa~GR~iR~~~D~g~i~ 134 (142)
T smart00491 114 RALAQAIGRAIRHKNDYGVVV 134 (142)
T ss_pred HHHHHHhCccccCccceEEEE
Confidence 456777888877655 6544
No 359
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=25.45 E-value=2e+02 Score=37.24 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=65.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHh-ccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-cccccCCCCCe
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQY-HNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-IAETSITIPGI 494 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~-~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-vAergldIp~V 494 (858)
.+.+|.|.+||.==++.-++.+++. .++ ++.|..|.--.+.+|+..+++..++|++.|||-|- +...+|...|.
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~f----PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdL 717 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGF----PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDL 717 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCC----CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecC
Confidence 3579999999987777777777633 222 67888898889999999999999999999999985 67778889999
Q ss_pred eEEE-c
Q psy2470 495 VYVI-D 499 (858)
Q Consensus 495 ~~VI-d 499 (858)
..|| |
T Consensus 718 GLlIID 723 (1139)
T COG1197 718 GLLIID 723 (1139)
T ss_pred CeEEEe
Confidence 8777 5
No 360
>KOG4439|consensus
Probab=25.18 E-value=2.8e+02 Score=33.96 Aligned_cols=83 Identities=13% Similarity=0.222 Sum_probs=60.9
Q ss_pred ceEEEeccCCCCHHHHHHhcCCC--CCC-cEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHh
Q psy2470 449 KLLILPMHGSLPNNEQIKVFRPT--PRA-MRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKA 525 (858)
Q Consensus 449 ~~~v~~LHg~l~q~~r~~v~~~f--~~g-~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~ 525 (858)
|+....+||.....+|..+.+.| ++| .+-.|++=--..-||++-+-+|+|=.|+ .|| |.=-.
T Consensus 770 g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDl----HWN-----------PaLEq 834 (901)
T KOG4439|consen 770 GHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDL----HWN-----------PALEQ 834 (901)
T ss_pred CeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEec----ccC-----------HHHHH
Confidence 89999999999999999998887 344 4445555444556788888899885332 244 44446
Q ss_pred hHHHhhcccCCCCCceEEEeh
Q psy2470 526 SAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 526 ~~~qR~GRaGR~g~G~~~rL~ 546 (858)
+|--|+-|-|....=+.||+.
T Consensus 835 QAcDRIYR~GQkK~V~IhR~~ 855 (901)
T KOG4439|consen 835 QACDRIYRMGQKKDVFIHRLM 855 (901)
T ss_pred HHHHHHHHhcccCceEEEEEE
Confidence 677799999988777777877
No 361
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=25.12 E-value=38 Score=44.37 Aligned_cols=54 Identities=11% Similarity=0.038 Sum_probs=32.0
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHH
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTE 269 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e 269 (858)
+-+.|-.||||| +.+-... ++.+-. +.|-..-.+||++-|+-+|..+-.|+.+.
T Consensus 19 ~lveASAGSGKT-------~vL~~r~--lrlLl~---~~~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 19 VLVEASAGTGKT-------FVLAERV--LRLLLE---GGPLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred EEEEEcCCCCch-------hHHHHHH--HHHHhh---cCCCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 345699999999 3322111 122211 11122235899999999998887776543
No 362
>KOG0386|consensus
Probab=25.02 E-value=1.8e+02 Score=36.93 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=74.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCC---CCCcEEEEEecCcccccCCCCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPT---PRAMRKIVIATNIAETSITIPG 493 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f---~~g~~kVlvATdvAergldIp~ 493 (858)
..+.||.|+.-..-.+-+...|.-. ++.-.-|-|.-..++|-..++.| ....+..|++|--...|++...
T Consensus 725 tgHRVLlF~qMTrlmdimEdyL~~~-------~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQt 797 (1157)
T KOG0386|consen 725 TGHRVLLFSQMTRLMDILEDYLQIR-------EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQT 797 (1157)
T ss_pred cCcchhhHHHHHHHHHHHHHHHhhh-------hhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhh
Confidence 3688999987777666677777644 67778888988888888766655 4456889999999999999999
Q ss_pred eeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 494 IVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 494 V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
.+.||= ||+.-. |----++.-|+-|-|-...-.++|+.
T Consensus 798 adtvii--------fdsdwn-------p~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 798 ADTVII--------FDSDWN-------PHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred cceEEE--------ecCCCC-------chhHHHHHHHHHHhhchhheeeeeee
Confidence 988885 432211 21122333444444444447778877
No 363
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=24.96 E-value=34 Score=32.79 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=9.9
Q ss_pred hccccCCcchhh
Q psy2470 206 YIGQPEMGPLLL 217 (858)
Q Consensus 206 ~~a~TGSGKT~~ 217 (858)
++|+||||||..
T Consensus 4 i~GpsGsGKstl 15 (137)
T cd00071 4 LSGPSGVGKSTL 15 (137)
T ss_pred EECCCCCCHHHH
Confidence 579999999933
No 364
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=24.95 E-value=26 Score=36.01 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=13.4
Q ss_pred cccchhccccCCcch
Q psy2470 201 PYQLRYIGQPEMGPL 215 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT 215 (858)
||.+.++|+.|||||
T Consensus 1 ~~~i~i~G~~GsGKT 15 (199)
T TIGR00101 1 PLKIGVAGPVGSGKT 15 (199)
T ss_pred CeEEEEECCCCCCHH
Confidence 577888999999999
No 365
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=24.86 E-value=1.6e+02 Score=31.83 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=10.7
Q ss_pred cchhccccCCcch
Q psy2470 203 QLRYIGQPEMGPL 215 (858)
Q Consensus 203 ~~~~~a~TGSGKT 215 (858)
.+.++|++|+|||
T Consensus 77 ~i~~~G~~g~GKT 89 (270)
T PRK06731 77 TIALIGPTGVGKT 89 (270)
T ss_pred EEEEECCCCCcHH
Confidence 4456799999999
No 366
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=24.78 E-value=47 Score=33.20 Aligned_cols=11 Identities=18% Similarity=0.283 Sum_probs=9.4
Q ss_pred hhccccCCcch
Q psy2470 205 RYIGQPEMGPL 215 (858)
Q Consensus 205 ~~~a~TGSGKT 215 (858)
-.+|+||+|||
T Consensus 7 ll~GpsGvGKT 17 (171)
T PF07724_consen 7 LLAGPSGVGKT 17 (171)
T ss_dssp EEESSTTSSHH
T ss_pred EEECCCCCCHH
Confidence 35799999999
No 367
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=24.49 E-value=27 Score=39.57 Aligned_cols=12 Identities=17% Similarity=0.050 Sum_probs=10.5
Q ss_pred chhccccCCcch
Q psy2470 204 LRYIGQPEMGPL 215 (858)
Q Consensus 204 ~~~~a~TGSGKT 215 (858)
+-++|+||||||
T Consensus 152 ilI~G~TGSGKT 163 (372)
T TIGR02525 152 GLICGETGSGKS 163 (372)
T ss_pred EEEECCCCCCHH
Confidence 457899999999
No 368
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=24.32 E-value=32 Score=34.29 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=9.1
Q ss_pred hccccCCcch
Q psy2470 206 YIGQPEMGPL 215 (858)
Q Consensus 206 ~~a~TGSGKT 215 (858)
+.|++|||||
T Consensus 4 i~G~~G~GKT 13 (187)
T cd01124 4 LSGGPGTGKT 13 (187)
T ss_pred EEcCCCCCHH
Confidence 5799999999
No 369
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=24.31 E-value=27 Score=33.13 Aligned_cols=10 Identities=30% Similarity=0.680 Sum_probs=8.9
Q ss_pred hccccCCcch
Q psy2470 206 YIGQPEMGPL 215 (858)
Q Consensus 206 ~~a~TGSGKT 215 (858)
++|++|+|||
T Consensus 4 L~G~~G~GKt 13 (139)
T PF07728_consen 4 LVGPPGTGKT 13 (139)
T ss_dssp EEESSSSSHH
T ss_pred EECCCCCCHH
Confidence 4799999999
No 370
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=24.15 E-value=37 Score=35.95 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=10.4
Q ss_pred chhccccCCcch
Q psy2470 204 LRYIGQPEMGPL 215 (858)
Q Consensus 204 ~~~~a~TGSGKT 215 (858)
+.++|+.|||||
T Consensus 36 lgivGeSGsGKS 47 (252)
T COG1124 36 LGIVGESGSGKS 47 (252)
T ss_pred EEEEcCCCCCHH
Confidence 457899999997
No 371
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=24.14 E-value=36 Score=39.39 Aligned_cols=40 Identities=25% Similarity=0.411 Sum_probs=27.4
Q ss_pred HHHHhcCCCCc-cccchhccccCCcchhhhhhhhcCcCccc
Q psy2470 190 RVRRALDFPDM-PYQLRYIGQPEMGPLLLRVRRALDFPDMP 229 (858)
Q Consensus 190 ~~~~~~~~~~~-~~~~~~~a~TGSGKT~~~~~~a~~lP~~~ 229 (858)
.++|++-.-.. =+++-.+|++|||||...-|....+|.+-
T Consensus 186 ~AKrAleiAAAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls 226 (490)
T COG0606 186 QAKRALEIAAAGGHNLLLVGPPGTGKTMLASRLPGLLPPLS 226 (490)
T ss_pred HHHHHHHHHHhcCCcEEEecCCCCchHHhhhhhcccCCCCC
Confidence 45666633333 47888999999999966666666666543
No 372
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=23.95 E-value=25 Score=35.73 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=13.2
Q ss_pred chhccccCCcchhhhhhhh
Q psy2470 204 LRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a 222 (858)
+.|.|++|||||...-.++
T Consensus 2 IgI~G~sgSGKTTla~~L~ 20 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLA 20 (194)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3477999999994444433
No 373
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=23.90 E-value=29 Score=33.14 Aligned_cols=10 Identities=20% Similarity=0.298 Sum_probs=9.2
Q ss_pred hccccCCcch
Q psy2470 206 YIGQPEMGPL 215 (858)
Q Consensus 206 ~~a~TGSGKT 215 (858)
+.|++|||||
T Consensus 4 i~G~~G~GKT 13 (165)
T cd01120 4 VFGPTGSGKT 13 (165)
T ss_pred EeCCCCCCHH
Confidence 5799999999
No 374
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=23.60 E-value=19 Score=38.63 Aligned_cols=11 Identities=18% Similarity=0.253 Sum_probs=9.8
Q ss_pred hhccccCCcch
Q psy2470 205 RYIGQPEMGPL 215 (858)
Q Consensus 205 ~~~a~TGSGKT 215 (858)
.|+|++|||||
T Consensus 32 ~iiGpNG~GKS 42 (258)
T COG1120 32 GILGPNGSGKS 42 (258)
T ss_pred EEECCCCCCHH
Confidence 46899999999
No 375
>PRK10436 hypothetical protein; Provisional
Probab=23.57 E-value=30 Score=40.48 Aligned_cols=12 Identities=17% Similarity=0.221 Sum_probs=10.5
Q ss_pred chhccccCCcch
Q psy2470 204 LRYIGQPEMGPL 215 (858)
Q Consensus 204 ~~~~a~TGSGKT 215 (858)
+-++|+||||||
T Consensus 221 iLvtGpTGSGKT 232 (462)
T PRK10436 221 ILVTGPTGSGKT 232 (462)
T ss_pred EEEECCCCCChH
Confidence 457899999999
No 376
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=23.57 E-value=2.6e+02 Score=35.47 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=46.5
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
+..++|-+|+.+=+...++.+...... .|+.+..++|+++..+|...+. ..|+++||
T Consensus 123 G~~V~VvTpn~yLA~qd~e~m~~l~~~---lGLtv~~i~gg~~~~~r~~~y~------~dIvygT~ 179 (896)
T PRK13104 123 GRGVHIVTVNDYLAKRDSQWMKPIYEF---LGLTVGVIYPDMSHKEKQEAYK------ADIVYGTN 179 (896)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhcc---cCceEEEEeCCCCHHHHHHHhC------CCEEEECC
Confidence 346999999999888888888755332 3899999999999999988874 47999998
No 377
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=23.56 E-value=47 Score=36.62 Aligned_cols=28 Identities=36% Similarity=0.610 Sum_probs=20.1
Q ss_pred HHHHHHHhcCCCCccccchhccccCCcch
Q psy2470 187 LLLRVRRALDFPDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~a~TGSGKT 215 (858)
+..++.+....+..|+ +-+.|++|||||
T Consensus 23 ~~~~L~~~~~~~~~~~-lll~Gp~GtGKT 50 (337)
T PRK12402 23 VVERLSRAVDSPNLPH-LLVQGPPGSGKT 50 (337)
T ss_pred HHHHHHHHHhCCCCce-EEEECCCCCCHH
Confidence 4455666666666565 557999999999
No 378
>PRK14531 adenylate kinase; Provisional
Probab=23.44 E-value=36 Score=34.19 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=14.0
Q ss_pred cchhccccCCcchhhhhhhh
Q psy2470 203 QLRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a 222 (858)
.+-++|++|||||...-.+|
T Consensus 4 ~i~i~G~pGsGKsT~~~~la 23 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLC 23 (183)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 45578999999994444433
No 379
>PRK06217 hypothetical protein; Validated
Probab=23.32 E-value=35 Score=34.28 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=14.6
Q ss_pred chhccccCCcchhhhhhhh
Q psy2470 204 LRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a 222 (858)
+-++|.+|||||...-.++
T Consensus 4 I~i~G~~GsGKSTla~~L~ 22 (183)
T PRK06217 4 IHITGASGSGTTTLGAALA 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4468999999996666655
No 380
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=23.32 E-value=56 Score=31.07 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=15.3
Q ss_pred CCccccchhccccCCcch
Q psy2470 198 PDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 198 ~~~~~~~~~~a~TGSGKT 215 (858)
+..|.-+.-.|.||+|||
T Consensus 50 p~KpLVlSfHG~tGtGKn 67 (127)
T PF06309_consen 50 PRKPLVLSFHGWTGTGKN 67 (127)
T ss_pred CCCCEEEEeecCCCCcHH
Confidence 334888888999999999
No 381
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.28 E-value=40 Score=37.67 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=14.8
Q ss_pred CCccccchhccccCCcch
Q psy2470 198 PDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 198 ~~~~~~~~~~a~TGSGKT 215 (858)
.++|-.+-..|++|||||
T Consensus 182 I~PPKGVLLYGPPGTGKT 199 (406)
T COG1222 182 IDPPKGVLLYGPPGTGKT 199 (406)
T ss_pred CCCCCceEeeCCCCCcHH
Confidence 455777777899999999
No 382
>PRK05541 adenylylsulfate kinase; Provisional
Probab=23.27 E-value=35 Score=33.94 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=14.7
Q ss_pred CCCccccchhccccCCcch
Q psy2470 197 FPDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 197 ~~~~~~~~~~~a~TGSGKT 215 (858)
+...|.-+-++|.+|||||
T Consensus 3 ~~~~~~~I~i~G~~GsGKs 21 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKT 21 (176)
T ss_pred CCCCCCEEEEEcCCCCCHH
Confidence 3344666778899999999
No 383
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=23.14 E-value=3.1e+02 Score=24.55 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=42.3
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCc
Q psy2470 416 MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNI 484 (858)
Q Consensus 416 ~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdv 484 (858)
...+.++|++|+..-++...+.+...... +..+..+|+.....++.... .+...|+++|.-
T Consensus 28 ~~~~~~lv~~p~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----~~~~~i~i~t~~ 88 (144)
T cd00046 28 LKGGQVLVLAPTRELANQVAERLKELFGE----GIKVGYLIGGTSIKQQEKLL----SGKTDIVVGTPG 88 (144)
T ss_pred ccCCCEEEEcCcHHHHHHHHHHHHHHhhC----CcEEEEEecCcchhHHHHHh----cCCCCEEEECcH
Confidence 34678999999999999998888755211 35677778776666554222 234677888875
No 384
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=23.06 E-value=35 Score=33.31 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=14.8
Q ss_pred hccccCCcchhhhhhhhcCcC
Q psy2470 206 YIGQPEMGPLLLRVRRALDFP 226 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP 226 (858)
++|++|||||.....++-.+.
T Consensus 3 l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 3 LMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred EECCCCCCHHHHHHHHHHhcC
Confidence 579999999955555554443
No 385
>KOG0745|consensus
Probab=23.05 E-value=42 Score=38.40 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=14.7
Q ss_pred cchhccccCCcchhhhhhhh
Q psy2470 203 QLRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a 222 (858)
.+-.+|+||||||+..-.+|
T Consensus 228 NvLllGPtGsGKTllaqTLA 247 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLA 247 (564)
T ss_pred cEEEECCCCCchhHHHHHHH
Confidence 45568999999995555554
No 386
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=22.96 E-value=58 Score=35.53 Aligned_cols=29 Identities=28% Similarity=0.419 Sum_probs=21.6
Q ss_pred hcCCCCccccchhccccCCcchhhhhhhh
Q psy2470 194 ALDFPDMPYQLRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 194 ~~~~~~~~~~~~~~a~TGSGKT~~~~~~a 222 (858)
..++..+|+++-..|++|+|||.+..+.|
T Consensus 17 ~~~~~~~~halL~~Gp~G~Gktt~a~~lA 45 (325)
T COG0470 17 ALESGRLPHALLFYGPPGVGKTTAALALA 45 (325)
T ss_pred HHhcCCCCceeeeeCCCCCCHHHHHHHHH
Confidence 34466788899999999999994444433
No 387
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=22.94 E-value=30 Score=38.44 Aligned_cols=13 Identities=15% Similarity=0.187 Sum_probs=11.3
Q ss_pred cchhccccCCcch
Q psy2470 203 QLRYIGQPEMGPL 215 (858)
Q Consensus 203 ~~~~~a~TGSGKT 215 (858)
.+-|.|.||||||
T Consensus 146 nilI~G~tGSGKT 158 (323)
T PRK13833 146 NIVISGGTGSGKT 158 (323)
T ss_pred eEEEECCCCCCHH
Confidence 4568899999999
No 388
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=22.82 E-value=29 Score=35.21 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=9.8
Q ss_pred hhccccCCcch
Q psy2470 205 RYIGQPEMGPL 215 (858)
Q Consensus 205 ~~~a~TGSGKT 215 (858)
.++|++|||||
T Consensus 3 gi~G~~GsGKS 13 (198)
T cd02023 3 GIAGGSGSGKT 13 (198)
T ss_pred EEECCCCCCHH
Confidence 46899999999
No 389
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=22.73 E-value=1.3e+02 Score=25.00 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=35.3
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 421 ILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 421 iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
.|+.+-+..++..+.+... .+..+..+.|.....++...++.+.+. .+|++|||
T Consensus 2 ~l~ivEg~~da~~~~~~~~--------~~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D 55 (76)
T smart00493 2 VLIIVEGPADAIALEKAGG--------FGGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATD 55 (76)
T ss_pred EEEEEcCHHHHHHHHHhcC--------CCEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcC
Confidence 4677778877776665442 135666777766555666666665443 67999998
No 390
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=22.61 E-value=32 Score=37.08 Aligned_cols=12 Identities=17% Similarity=0.221 Sum_probs=10.6
Q ss_pred chhccccCCcch
Q psy2470 204 LRYIGQPEMGPL 215 (858)
Q Consensus 204 ~~~~a~TGSGKT 215 (858)
+-++|+||||||
T Consensus 83 ilisG~tGSGKT 94 (264)
T cd01129 83 ILVTGPTGSGKT 94 (264)
T ss_pred EEEECCCCCcHH
Confidence 557899999999
No 391
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=22.54 E-value=31 Score=37.85 Aligned_cols=13 Identities=15% Similarity=0.296 Sum_probs=11.0
Q ss_pred cchhccccCCcch
Q psy2470 203 QLRYIGQPEMGPL 215 (858)
Q Consensus 203 ~~~~~a~TGSGKT 215 (858)
.+-+.|+||||||
T Consensus 134 ~ilI~G~tGSGKT 146 (299)
T TIGR02782 134 NILVVGGTGSGKT 146 (299)
T ss_pred eEEEECCCCCCHH
Confidence 3557899999999
No 392
>PF05729 NACHT: NACHT domain
Probab=22.53 E-value=34 Score=32.98 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=17.1
Q ss_pred CCCCceEEEEecccCHHHHHHHhh
Q psy2470 347 KRTQLKLIISSATVDAEEICQFYN 370 (858)
Q Consensus 347 ~~~~~q~il~SAT~~~~~~~~~~~ 370 (858)
..++.++++.|.+-....+.+++.
T Consensus 117 ~~~~~~liit~r~~~~~~~~~~~~ 140 (166)
T PF05729_consen 117 LPPGVKLIITSRPRAFPDLRRRLK 140 (166)
T ss_pred cCCCCeEEEEEcCChHHHHHHhcC
Confidence 466788888887766666666665
No 393
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=22.48 E-value=39 Score=37.90 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=11.4
Q ss_pred cchhccccCCcch
Q psy2470 203 QLRYIGQPEMGPL 215 (858)
Q Consensus 203 ~~~~~a~TGSGKT 215 (858)
.+-+.|+||||||
T Consensus 164 nilI~G~tGSGKT 176 (344)
T PRK13851 164 TMLLCGPTGSGKT 176 (344)
T ss_pred eEEEECCCCccHH
Confidence 4677899999999
No 394
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=22.45 E-value=63 Score=33.79 Aligned_cols=10 Identities=30% Similarity=0.577 Sum_probs=9.1
Q ss_pred hccccCCcch
Q psy2470 206 YIGQPEMGPL 215 (858)
Q Consensus 206 ~~a~TGSGKT 215 (858)
+.|+||+|||
T Consensus 18 I~G~~G~GKT 27 (242)
T cd00984 18 IAARPSMGKT 27 (242)
T ss_pred EEeCCCCCHH
Confidence 5799999999
No 395
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=22.42 E-value=31 Score=42.94 Aligned_cols=77 Identities=12% Similarity=0.042 Sum_probs=40.1
Q ss_pred ccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHH---HHhCCcCccEeeeeeEEE
Q psy2470 209 QPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFL---TEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 209 ~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~---~e~g~~~g~~~~~vG~~v 285 (858)
+||=|||++. .+|..+.. -. |+ .+=|++...-||..-|+.++ +.+|..+|.. +...-
T Consensus 99 kTGEGKTLvA-----tLpayLnA-------L~--Gk---gVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~i---~~~~~ 158 (925)
T PRK12903 99 KTGEGKTITS-----IAPVYLNA-------LT--GK---GVIVSTVNEYLAERDAEEMGKVFNFLGLSVGIN---KANMD 158 (925)
T ss_pred cCCCCccHHH-----HHHHHHHH-------hc--CC---ceEEEecchhhhhhhHHHHHHHHHHhCCceeee---CCCCC
Confidence 5999999433 33333321 11 22 24566777777766555443 4456665544 22111
Q ss_pred eccceeecceeEEEeecCcc
Q psy2470 286 RKGRMKILVSKIFKMSQGKP 305 (858)
Q Consensus 286 r~~~~~~~~t~I~v~TpGrL 305 (858)
..+.+..=.++|+|+|..-|
T Consensus 159 ~~~rr~aY~~DItYgTn~E~ 178 (925)
T PRK12903 159 PNLKREAYACDITYSVHSEL 178 (925)
T ss_pred hHHHHHhccCCCeeecCccc
Confidence 11111112479999999754
No 396
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=22.38 E-value=31 Score=35.94 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=10.4
Q ss_pred chhccccCCcch
Q psy2470 204 LRYIGQPEMGPL 215 (858)
Q Consensus 204 ~~~~a~TGSGKT 215 (858)
+.|+|+.|||||
T Consensus 31 v~iiGpSGSGKS 42 (240)
T COG1126 31 VVIIGPSGSGKS 42 (240)
T ss_pred EEEECCCCCCHH
Confidence 457899999998
No 397
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=22.30 E-value=31 Score=38.63 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=10.6
Q ss_pred chhccccCCcch
Q psy2470 204 LRYIGQPEMGPL 215 (858)
Q Consensus 204 ~~~~a~TGSGKT 215 (858)
+-+.|+||||||
T Consensus 125 ili~G~tGSGKT 136 (343)
T TIGR01420 125 ILVTGPTGSGKS 136 (343)
T ss_pred EEEECCCCCCHH
Confidence 567899999999
No 398
>PRK00300 gmk guanylate kinase; Provisional
Probab=22.24 E-value=45 Score=33.91 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=14.8
Q ss_pred chhccccCCcchhhhhhhhcCcC
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFP 226 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP 226 (858)
+.++|++|||||...-..+-..|
T Consensus 8 i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 8 IVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred EEEECCCCCCHHHHHHHHHhhCc
Confidence 45679999999944444443344
No 399
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=22.23 E-value=34 Score=37.46 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=13.2
Q ss_pred cccchhccccCCcch
Q psy2470 201 PYQLRYIGQPEMGPL 215 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT 215 (858)
|.-..+.|+|||||+
T Consensus 87 P~I~~VYGPTG~GKS 101 (369)
T PF02456_consen 87 PFIGVVYGPTGSGKS 101 (369)
T ss_pred ceEEEEECCCCCCHH
Confidence 666778999999999
No 400
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=22.15 E-value=35 Score=34.50 Aligned_cols=10 Identities=30% Similarity=0.302 Sum_probs=9.0
Q ss_pred hccccCCcch
Q psy2470 206 YIGQPEMGPL 215 (858)
Q Consensus 206 ~~a~TGSGKT 215 (858)
..||||||||
T Consensus 29 ~yG~tGsGKT 38 (186)
T cd01363 29 AYGQTGSGKT 38 (186)
T ss_pred EECCCCCcce
Confidence 4699999999
No 401
>PRK00131 aroK shikimate kinase; Reviewed
Probab=21.96 E-value=40 Score=32.94 Aligned_cols=25 Identities=16% Similarity=0.014 Sum_probs=17.5
Q ss_pred cccchhccccCCcchhhhhhhhcCc
Q psy2470 201 PYQLRYIGQPEMGPLLLRVRRALDF 225 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~~a~~l 225 (858)
+..+-++|.+|||||.....+|-.+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3456678999999996666555443
No 402
>PRK00254 ski2-like helicase; Provisional
Probab=21.82 E-value=1.3e+02 Score=37.50 Aligned_cols=71 Identities=21% Similarity=0.233 Sum_probs=49.9
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----cccc-cCCC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAET-SITI 491 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAer-gldI 491 (858)
.+++|+-+|+++-+....+.+..... .++.+..++|+.+...+. + +...|+|+|+ +..+ ...+
T Consensus 68 ~~~~l~l~P~~aLa~q~~~~~~~~~~----~g~~v~~~~Gd~~~~~~~--~-----~~~~IiV~Tpe~~~~ll~~~~~~l 136 (720)
T PRK00254 68 GGKAVYLVPLKALAEEKYREFKDWEK----LGLRVAMTTGDYDSTDEW--L-----GKYDIIIATAEKFDSLLRHGSSWI 136 (720)
T ss_pred CCeEEEEeChHHHHHHHHHHHHHHhh----cCCEEEEEeCCCCCchhh--h-----ccCCEEEEcHHHHHHHHhCCchhh
Confidence 57899999999999988888875321 278899999998765431 1 3457999994 2221 2346
Q ss_pred CCeeEEE-c
Q psy2470 492 PGIVYVI-D 499 (858)
Q Consensus 492 p~V~~VI-d 499 (858)
.+|.+|| |
T Consensus 137 ~~l~lvViD 145 (720)
T PRK00254 137 KDVKLVVAD 145 (720)
T ss_pred hcCCEEEEc
Confidence 7887766 5
No 403
>CHL00195 ycf46 Ycf46; Provisional
Probab=21.78 E-value=2.1e+02 Score=33.73 Aligned_cols=130 Identities=15% Similarity=0.174 Sum_probs=58.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCccccCCCcchHHHhhhhcCCCC---chhhhHHhhcccccchHHHHHHHhhhhhcccccCC
Q psy2470 90 PSPPPAQNLRVALELLYSLGAMDVNGNLTKPVGETMAEMPLH---PIHAKVLLSSGSVLDSAVEILLHRLRGLCDNVDSG 166 (858)
Q Consensus 90 ~~~P~~~~l~~a~~~L~~l~ald~~~~lt~~lG~~ma~lp~~---p~~~~~l~~s~s~~~~~~~~~~~r~~~~~~~~~~~ 166 (858)
+.-|..+-+.+-++.+..--...-++...+-+-+....|+.. -.+++.+...|.+....++.++..-+.+.+.. +
T Consensus 139 ~~lP~~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~q~~~~~--~ 216 (489)
T CHL00195 139 FPLPTESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIATYKTIDENSIPLILEEKKQIISQT--E 216 (489)
T ss_pred ecCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHHHhhh--c
Confidence 345666666666555543111112222122344444444433 23445555666665555554443333332221 2
Q ss_pred CCcccccccchh-ccCCCCh--hHHHHHH------HhcCCCCccccchhccccCCcchhhhhhhh
Q psy2470 167 PETFHDHEMCFS-IRGNQTQ--PLLLRVR------RALDFPDMPYQLRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 167 ~~~f~~~e~~~~-l~~~~~~--~~~~~~~------~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a 222 (858)
.-.|...+..|+ +.+-... -+.+|.. +.++ ..+|-.+-..|++|||||+..-..|
T Consensus 217 ~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~g-l~~pkGILL~GPpGTGKTllAkaiA 280 (489)
T CHL00195 217 ILEFYSVNEKISDIGGLDNLKDWLKKRSTSFSKQASNYG-LPTPRGLLLVGIQGTGKSLTAKAIA 280 (489)
T ss_pred cccccCCCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcC-CCCCceEEEECCCCCcHHHHHHHHH
Confidence 234444444444 3332111 1111111 1112 1346778888999999994444433
No 404
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=21.68 E-value=54 Score=40.67 Aligned_cols=46 Identities=13% Similarity=0.059 Sum_probs=25.9
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHH
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVV 264 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~ 264 (858)
.-++|.+||||| +.+-.+.. .+.. . |. ...+++.+||--+|..+.+
T Consensus 341 ~iitGgpGTGKT-------t~l~~i~~---~~~~--~--~~-~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 341 VILTGGPGTGKT-------TITRAIIE---LAEE--L--GG-LLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred EEEECCCCCCHH-------HHHHHHHH---HHHH--c--CC-CceEEEEeCchHHHHHHHH
Confidence 457899999999 21111111 1110 1 11 1346889999998875543
No 405
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=21.65 E-value=40 Score=33.53 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=11.1
Q ss_pred hccccCCcchhhhhh
Q psy2470 206 YIGQPEMGPLLLRVR 220 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~ 220 (858)
++|.+|||||...-.
T Consensus 4 i~G~pGsGKst~a~~ 18 (183)
T TIGR01359 4 VLGGPGSGKGTQCAK 18 (183)
T ss_pred EECCCCCCHHHHHHH
Confidence 579999999944333
No 406
>PRK14737 gmk guanylate kinase; Provisional
Probab=21.62 E-value=53 Score=33.34 Aligned_cols=33 Identities=9% Similarity=0.069 Sum_probs=20.7
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccC
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIG 236 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~ 236 (858)
+-++|++|||||.+.-.+.-..|.+.+..++..
T Consensus 7 ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TT 39 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALLEEHPDFLFSISCTT 39 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccccccCccC
Confidence 345799999999555555445565544444443
No 407
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=21.59 E-value=42 Score=34.98 Aligned_cols=26 Identities=8% Similarity=0.008 Sum_probs=18.8
Q ss_pred cccchhccccCCcchhhhhhhhcCcC
Q psy2470 201 PYQLRYIGQPEMGPLLLRVRRALDFP 226 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~~a~~lP 226 (858)
++-+.|.|.+|||||...-..+-+++
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 57788999999999955555444444
No 408
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=21.58 E-value=34 Score=28.47 Aligned_cols=10 Identities=20% Similarity=0.215 Sum_probs=9.0
Q ss_pred hccccCCcch
Q psy2470 206 YIGQPEMGPL 215 (858)
Q Consensus 206 ~~a~TGSGKT 215 (858)
+.|..|||||
T Consensus 4 i~G~~gsGKs 13 (69)
T cd02019 4 ITGGSGSGKS 13 (69)
T ss_pred EECCCCCCHH
Confidence 5799999999
No 409
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=21.52 E-value=32 Score=32.33 Aligned_cols=12 Identities=17% Similarity=0.302 Sum_probs=10.3
Q ss_pred chhccccCCcch
Q psy2470 204 LRYIGQPEMGPL 215 (858)
Q Consensus 204 ~~~~a~TGSGKT 215 (858)
+.++|++|||||
T Consensus 14 ~~i~G~nGsGKS 25 (137)
T PF00005_consen 14 VAIVGPNGSGKS 25 (137)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEEccCCCccc
Confidence 456899999999
No 410
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=21.46 E-value=64 Score=33.48 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=10.2
Q ss_pred chhccccCCcch
Q psy2470 204 LRYIGQPEMGPL 215 (858)
Q Consensus 204 ~~~~a~TGSGKT 215 (858)
.-+.|++|||||
T Consensus 22 ~li~G~~GsGKT 33 (226)
T PF06745_consen 22 VLISGPPGSGKT 33 (226)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEEeCCCCCcH
Confidence 446899999999
No 411
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=21.36 E-value=51 Score=32.67 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=14.4
Q ss_pred hccccCCcchhhhhhhhcCcCc
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPD 227 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~ 227 (858)
++|++|||||...-.++-..|.
T Consensus 6 l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 6 ISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EECCCCCCHHHHHHHHHccCcc
Confidence 5799999999444444443443
No 412
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=21.07 E-value=35 Score=38.08 Aligned_cols=13 Identities=15% Similarity=0.222 Sum_probs=11.4
Q ss_pred cchhccccCCcch
Q psy2470 203 QLRYIGQPEMGPL 215 (858)
Q Consensus 203 ~~~~~a~TGSGKT 215 (858)
.+-+.|+||||||
T Consensus 162 nili~G~tgSGKT 174 (332)
T PRK13900 162 NIIISGGTSTGKT 174 (332)
T ss_pred cEEEECCCCCCHH
Confidence 4678899999999
No 413
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=21.04 E-value=32 Score=35.17 Aligned_cols=13 Identities=23% Similarity=0.250 Sum_probs=9.8
Q ss_pred cchhccccCCcch
Q psy2470 203 QLRYIGQPEMGPL 215 (858)
Q Consensus 203 ~~~~~a~TGSGKT 215 (858)
++-+.|+||||||
T Consensus 40 h~li~G~tgsGKS 52 (205)
T PF01580_consen 40 HLLIAGATGSGKS 52 (205)
T ss_dssp SEEEE--TTSSHH
T ss_pred eEEEEcCCCCCcc
Confidence 6778999999999
No 414
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=20.99 E-value=38 Score=35.94 Aligned_cols=11 Identities=18% Similarity=0.120 Sum_probs=10.0
Q ss_pred hhccccCCcch
Q psy2470 205 RYIGQPEMGPL 215 (858)
Q Consensus 205 ~~~a~TGSGKT 215 (858)
.|+|++|||||
T Consensus 29 ~IvG~NGsGKS 39 (251)
T cd03273 29 AITGLNGSGKS 39 (251)
T ss_pred EEECCCCCCHH
Confidence 47899999999
No 415
>PRK14530 adenylate kinase; Provisional
Probab=20.97 E-value=41 Score=34.73 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=13.8
Q ss_pred chhccccCCcchhhhhhhh
Q psy2470 204 LRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a 222 (858)
+-++|++|||||...-.+|
T Consensus 6 I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 6 ILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5578999999995544443
No 416
>PRK13767 ATP-dependent helicase; Provisional
Probab=20.91 E-value=4e+02 Score=34.00 Aligned_cols=77 Identities=17% Similarity=0.124 Sum_probs=51.9
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHh-------c-cCC-CCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcc----
Q psy2470 419 GDILAFVIGLEQIEHIIGILKQY-------H-NQR-EDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIA---- 485 (858)
Q Consensus 419 g~iLVFl~t~~~i~~l~~~L~~~-------~-~~~-~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvA---- 485 (858)
..+|+.+|+++-+....+.|... . ..+ ..+++.+..+||+.++.+|.+.++.. ..|||+|+=-
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~----p~IlVtTPE~L~~l 160 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKP----PHILITTPESLAIL 160 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCC----CCEEEecHHHHHHH
Confidence 45999999999888777655421 0 001 12378899999999999998877643 3699999711
Q ss_pred --cccC--CCCCeeEEE-c
Q psy2470 486 --ETSI--TIPGIVYVI-D 499 (858)
Q Consensus 486 --ergl--dIp~V~~VI-d 499 (858)
.... .+.++++|| |
T Consensus 161 l~~~~~~~~l~~l~~VVID 179 (876)
T PRK13767 161 LNSPKFREKLRTVKWVIVD 179 (876)
T ss_pred hcChhHHHHHhcCCEEEEe
Confidence 1111 356778776 5
No 417
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=20.88 E-value=40 Score=38.19 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=13.9
Q ss_pred CccccchhccccCCcch
Q psy2470 199 DMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 199 ~~~~~~~~~a~TGSGKT 215 (858)
.+|-.+-+.|+||||||
T Consensus 40 ~~p~n~~iyG~~GTGKT 56 (366)
T COG1474 40 ERPSNIIIYGPTGTGKT 56 (366)
T ss_pred CCCccEEEECCCCCCHh
Confidence 34556888999999999
No 418
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=20.78 E-value=36 Score=40.10 Aligned_cols=12 Identities=17% Similarity=0.221 Sum_probs=10.7
Q ss_pred chhccccCCcch
Q psy2470 204 LRYIGQPEMGPL 215 (858)
Q Consensus 204 ~~~~a~TGSGKT 215 (858)
+-++|+||||||
T Consensus 245 ilitGptGSGKT 256 (486)
T TIGR02533 245 ILVTGPTGSGKT 256 (486)
T ss_pred EEEEcCCCCCHH
Confidence 468999999999
No 419
>PLN02840 tRNA dimethylallyltransferase
Probab=20.76 E-value=42 Score=38.64 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=17.4
Q ss_pred cchhccccCCcchhhhhhhhcCcC
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFP 226 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP 226 (858)
-+-|.|+||||||.+...+|-.+.
T Consensus 23 vi~I~GptgsGKTtla~~La~~~~ 46 (421)
T PLN02840 23 VIVISGPTGAGKSRLALELAKRLN 46 (421)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
Confidence 466789999999966666554443
No 420
>KOG0731|consensus
Probab=20.72 E-value=44 Score=41.11 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=17.1
Q ss_pred cccchhccccCCcchhhhhhhh
Q psy2470 201 PYQLRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~~a 222 (858)
|-.+-.+|++|||||++..+.|
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiA 365 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIA 365 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHh
Confidence 8888889999999995444433
No 421
>PRK06762 hypothetical protein; Provisional
Probab=20.70 E-value=36 Score=33.34 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=12.4
Q ss_pred ccccchhccccCCcch
Q psy2470 200 MPYQLRYIGQPEMGPL 215 (858)
Q Consensus 200 ~~~~~~~~a~TGSGKT 215 (858)
||.-+-++|.+|||||
T Consensus 1 m~~li~i~G~~GsGKS 16 (166)
T PRK06762 1 MTTLIIIRGNSGSGKT 16 (166)
T ss_pred CCeEEEEECCCCCCHH
Confidence 3445567899999999
No 422
>PRK06526 transposase; Provisional
Probab=20.67 E-value=35 Score=36.51 Aligned_cols=24 Identities=25% Similarity=0.420 Sum_probs=18.8
Q ss_pred HHhcCCCCccccchhccccCCcch
Q psy2470 192 RRALDFPDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 192 ~~~~~~~~~~~~~~~~a~TGSGKT 215 (858)
..+.+|..-+-.+-+.|++|||||
T Consensus 89 l~~~~fi~~~~nlll~Gp~GtGKT 112 (254)
T PRK06526 89 LGTLDFVTGKENVVFLGPPGTGKT 112 (254)
T ss_pred HhcCchhhcCceEEEEeCCCCchH
Confidence 345566666667888999999999
No 423
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=20.64 E-value=43 Score=34.90 Aligned_cols=22 Identities=14% Similarity=0.049 Sum_probs=15.6
Q ss_pred cccchhccccCCcchhhhhhhh
Q psy2470 201 PYQLRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~~a 222 (858)
+..+.|.|++|||||...-..|
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la 23 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVA 23 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3456788999999995444444
No 424
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=20.56 E-value=67 Score=33.34 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=11.2
Q ss_pred cchhccccCCcch
Q psy2470 203 QLRYIGQPEMGPL 215 (858)
Q Consensus 203 ~~~~~a~TGSGKT 215 (858)
.+-+.|++|||||
T Consensus 44 ~~~l~G~~G~GKT 56 (227)
T PRK08903 44 FFYLWGEAGSGRS 56 (227)
T ss_pred eEEEECCCCCCHH
Confidence 4567799999999
No 425
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=20.53 E-value=37 Score=40.85 Aligned_cols=12 Identities=17% Similarity=0.194 Sum_probs=10.5
Q ss_pred chhccccCCcch
Q psy2470 204 LRYIGQPEMGPL 215 (858)
Q Consensus 204 ~~~~a~TGSGKT 215 (858)
+-++|+||||||
T Consensus 319 ilv~G~tGSGKT 330 (564)
T TIGR02538 319 VLVTGPTGSGKT 330 (564)
T ss_pred EEEECCCCCCHH
Confidence 457899999999
No 426
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.53 E-value=37 Score=36.69 Aligned_cols=10 Identities=20% Similarity=0.341 Sum_probs=9.4
Q ss_pred hccccCCcch
Q psy2470 206 YIGQPEMGPL 215 (858)
Q Consensus 206 ~~a~TGSGKT 215 (858)
++|++|||||
T Consensus 26 i~G~nGsGKS 35 (276)
T cd03241 26 LTGETGAGKS 35 (276)
T ss_pred EEcCCCCCHH
Confidence 6899999999
No 427
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=20.46 E-value=47 Score=33.10 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=18.3
Q ss_pred ccccCCcchhhhhhhhcCcCc
Q psy2470 207 IGQPEMGPLLLRVRRALDFPD 227 (858)
Q Consensus 207 ~a~TGSGKT~~~~~~a~~lP~ 227 (858)
+|-.|+|||.+++.++-+.|.
T Consensus 5 IAtiGCGKTTva~aL~~LFg~ 25 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE 25 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC
Confidence 578899999999998888886
No 428
>PRK05480 uridine/cytidine kinase; Provisional
Probab=20.44 E-value=36 Score=34.93 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=14.9
Q ss_pred cccchhccccCCcchhhhhh
Q psy2470 201 PYQLRYIGQPEMGPLLLRVR 220 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~ 220 (858)
|.-+.|.|.+|||||...-.
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~ 25 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVAST 25 (209)
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 55677899999999944433
No 429
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=20.37 E-value=35 Score=32.25 Aligned_cols=10 Identities=30% Similarity=0.488 Sum_probs=8.8
Q ss_pred hccccCCcch
Q psy2470 206 YIGQPEMGPL 215 (858)
Q Consensus 206 ~~a~TGSGKT 215 (858)
+.|.+|||||
T Consensus 4 ~~G~pgsGKS 13 (143)
T PF13671_consen 4 LCGPPGSGKS 13 (143)
T ss_dssp EEESTTSSHH
T ss_pred EECCCCCCHH
Confidence 4699999999
No 430
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=20.33 E-value=50 Score=35.09 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=14.7
Q ss_pred hhccccCCcch-hhhhhhhcCcC
Q psy2470 205 RYIGQPEMGPL-LLRVRRALDFP 226 (858)
Q Consensus 205 ~~~a~TGSGKT-~~~~~~a~~lP 226 (858)
.++|++|+||| +.++.+-+.-|
T Consensus 33 silGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 33 AILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred EEECCCCCCHHHHHHHHhCCCCC
Confidence 46899999996 44444445555
No 431
>PRK04296 thymidine kinase; Provisional
Probab=20.24 E-value=41 Score=34.14 Aligned_cols=10 Identities=20% Similarity=0.202 Sum_probs=9.3
Q ss_pred hccccCCcch
Q psy2470 206 YIGQPEMGPL 215 (858)
Q Consensus 206 ~~a~TGSGKT 215 (858)
++|++|||||
T Consensus 7 itG~~GsGKT 16 (190)
T PRK04296 7 IYGAMNSGKS 16 (190)
T ss_pred EECCCCCHHH
Confidence 5899999999
No 432
>PHA00729 NTP-binding motif containing protein
Probab=20.22 E-value=44 Score=35.09 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=15.7
Q ss_pred ccchhccccCCcchhhhhhhh
Q psy2470 202 YQLRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 202 ~~~~~~a~TGSGKT~~~~~~a 222 (858)
..+-++|.+|+|||....+.|
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa 38 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVA 38 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 357789999999995555544
No 433
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=20.14 E-value=45 Score=36.67 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=15.4
Q ss_pred chhccccCCcchhhhhhhhcCcC
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFP 226 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP 226 (858)
+.++|++|||||+......=.+|
T Consensus 34 lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 34 LGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred EEEEcCCCCCHHHHHHHHHhccC
Confidence 56789999999944444444444
No 434
>PTZ00301 uridine kinase; Provisional
Probab=20.12 E-value=36 Score=35.36 Aligned_cols=12 Identities=17% Similarity=0.219 Sum_probs=10.5
Q ss_pred chhccccCCcch
Q psy2470 204 LRYIGQPEMGPL 215 (858)
Q Consensus 204 ~~~~a~TGSGKT 215 (858)
+.|.|.+|||||
T Consensus 6 IgIaG~SgSGKT 17 (210)
T PTZ00301 6 IGISGASGSGKS 17 (210)
T ss_pred EEEECCCcCCHH
Confidence 457799999999
No 435
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=20.09 E-value=59 Score=35.68 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=18.1
Q ss_pred CccccchhccccCCcchhhhhhhh
Q psy2470 199 DMPYQLRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 199 ~~~~~~~~~a~TGSGKT~~~~~~a 222 (858)
..|.-+-+.|.+|||||.....+|
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La 113 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELA 113 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 357788899999999995444444
No 436
>KOG2373|consensus
Probab=20.07 E-value=41 Score=37.27 Aligned_cols=9 Identities=22% Similarity=0.313 Sum_probs=8.6
Q ss_pred ccccCCcch
Q psy2470 207 IGQPEMGPL 215 (858)
Q Consensus 207 ~a~TGSGKT 215 (858)
+|+||||||
T Consensus 279 TGpTGsGKT 287 (514)
T KOG2373|consen 279 TGPTGSGKT 287 (514)
T ss_pred ecCCCCCce
Confidence 799999999
Done!