Query psy2470
Match_columns 858
No_of_seqs 583 out of 3469
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 17:07:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2470.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2470hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 7.2E-85 2.5E-89 793.4 42.7 552 206-858 114-698 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 1.6E-42 5.5E-47 421.7 23.8 516 206-818 51-655 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 3.3E-41 1.1E-45 409.2 28.8 517 205-818 44-630 (702)
4 2zj8_A DNA helicase, putative 100.0 3E-39 1E-43 393.0 21.7 519 206-818 44-644 (720)
5 3i4u_A ATP-dependent RNA helic 100.0 4.5E-39 1.5E-43 342.4 18.9 200 615-857 19-218 (270)
6 2db3_A ATP-dependent RNA helic 100.0 5.3E-36 1.8E-40 343.3 18.6 314 162-546 74-404 (434)
7 3fht_A ATP-dependent RNA helic 100.0 1.8E-33 6.3E-38 318.1 17.4 290 206-546 69-376 (412)
8 3fmp_B ATP-dependent RNA helic 100.0 1.4E-34 4.8E-39 335.4 7.5 315 162-546 110-443 (479)
9 2j0s_A ATP-dependent RNA helic 100.0 1E-33 3.5E-38 320.8 11.6 282 206-546 79-380 (410)
10 3eiq_A Eukaryotic initiation f 100.0 4.2E-34 1.5E-38 323.8 8.1 282 206-546 82-384 (414)
11 3pey_A ATP-dependent RNA helic 100.0 5.6E-32 1.9E-36 303.7 21.7 289 206-546 49-353 (395)
12 3o8b_A HCV NS3 protease/helica 100.0 1.6E-32 5.5E-37 323.8 17.1 264 206-546 237-511 (666)
13 2i4i_A ATP-dependent RNA helic 100.0 1.1E-32 3.9E-37 312.6 13.4 294 206-546 57-380 (417)
14 3l9o_A ATP-dependent RNA helic 100.0 1E-32 3.4E-37 346.4 14.3 298 204-546 202-594 (1108)
15 1s2m_A Putative ATP-dependent 100.0 3.1E-31 1.1E-35 299.2 18.2 280 206-546 63-362 (400)
16 2jlq_A Serine protease subunit 100.0 2.2E-32 7.4E-37 314.7 8.5 273 206-546 24-308 (451)
17 3i5x_A ATP-dependent RNA helic 100.0 1.2E-31 4.1E-36 317.0 14.7 301 206-546 116-446 (563)
18 3sqw_A ATP-dependent RNA helic 100.0 3.7E-32 1.3E-36 322.7 9.9 297 206-546 65-395 (579)
19 1xti_A Probable ATP-dependent 100.0 2.5E-31 8.6E-36 298.7 12.9 283 206-546 50-354 (391)
20 1hv8_A Putative ATP-dependent 100.0 8.2E-31 2.8E-35 291.2 16.5 277 206-546 49-342 (367)
21 2z83_A Helicase/nucleoside tri 100.0 3.2E-31 1.1E-35 305.5 11.6 271 206-546 26-310 (459)
22 1fuu_A Yeast initiation factor 100.0 1.5E-31 5.1E-36 300.6 5.0 281 206-546 63-363 (394)
23 2whx_A Serine protease/ntpase/ 100.0 8.2E-31 2.8E-35 311.3 9.4 271 206-546 191-475 (618)
24 4a4z_A Antiviral helicase SKI2 100.0 3.3E-30 1.1E-34 320.9 14.2 299 204-546 57-489 (997)
25 2v1x_A ATP-dependent DNA helic 100.0 3.2E-30 1.1E-34 305.2 13.4 286 206-552 64-379 (591)
26 3rc3_A ATP-dependent RNA helic 100.0 5.3E-30 1.8E-34 305.5 14.2 262 249-577 182-466 (677)
27 3fho_A ATP-dependent RNA helic 100.0 1.6E-30 5.6E-35 303.6 8.6 290 206-546 163-467 (508)
28 4f92_B U5 small nuclear ribonu 100.0 2.2E-29 7.7E-34 326.5 19.6 427 204-685 945-1444(1724)
29 1tf5_A Preprotein translocase 100.0 5.3E-30 1.8E-34 304.7 12.2 102 418-546 432-542 (844)
30 2xgj_A ATP-dependent RNA helic 100.0 5.4E-29 1.9E-33 310.0 18.6 298 204-546 104-496 (1010)
31 1yks_A Genome polyprotein [con 100.0 3E-29 1E-33 287.4 11.9 265 206-546 13-296 (440)
32 2z0m_A 337AA long hypothetical 100.0 5.5E-29 1.9E-33 273.4 12.7 268 206-546 36-320 (337)
33 3oiy_A Reverse gyrase helicase 100.0 1.8E-29 6.3E-34 286.8 7.1 275 206-546 41-362 (414)
34 1oyw_A RECQ helicase, ATP-depe 100.0 6.8E-29 2.3E-33 290.4 11.2 276 206-546 45-340 (523)
35 2v6i_A RNA helicase; membrane, 100.0 6.3E-29 2.1E-33 284.1 8.6 272 206-546 7-287 (431)
36 2fsf_A Preprotein translocase 100.0 1.4E-28 4.7E-33 291.7 11.8 117 403-546 424-580 (853)
37 4f92_B U5 small nuclear ribonu 99.9 9.4E-28 3.2E-32 311.3 19.9 415 204-668 98-599 (1724)
38 2ykg_A Probable ATP-dependent 99.9 1.7E-28 5.8E-33 297.3 11.4 108 417-546 397-513 (696)
39 2wv9_A Flavivirin protease NS2 99.9 1.7E-28 5.7E-33 293.4 10.8 266 205-546 245-530 (673)
40 4a2p_A RIG-I, retinoic acid in 99.9 2.7E-27 9.4E-32 278.3 14.7 112 416-546 388-505 (556)
41 1nkt_A Preprotein translocase 99.9 3.2E-27 1.1E-31 280.2 12.8 102 418-546 460-614 (922)
42 3tbk_A RIG-I helicase domain; 99.9 2.3E-26 7.9E-31 269.9 14.2 112 416-546 387-504 (555)
43 4ddu_A Reverse gyrase; topoiso 99.9 2.6E-27 8.8E-32 297.3 5.8 252 205-504 97-388 (1104)
44 4a2q_A RIG-I, retinoic acid in 99.9 5.5E-26 1.9E-30 279.3 15.2 112 416-546 629-746 (797)
45 1wp9_A ATP-dependent RNA helic 99.9 4.4E-26 1.5E-30 261.6 10.3 106 416-546 359-472 (494)
46 1gku_B Reverse gyrase, TOP-RG; 99.9 1.3E-26 4.3E-31 291.0 3.1 247 206-504 76-353 (1054)
47 4a2w_A RIG-I, retinoic acid in 99.9 7E-25 2.4E-29 272.8 17.4 112 416-546 629-746 (936)
48 4gl2_A Interferon-induced heli 99.9 6.5E-26 2.2E-30 274.7 7.9 108 418-546 400-515 (699)
49 2eyq_A TRCF, transcription-rep 99.9 8.1E-25 2.8E-29 276.3 17.6 275 205-546 628-919 (1151)
50 1gm5_A RECG; helicase, replica 99.9 7.3E-26 2.5E-30 273.9 3.7 279 203-546 391-694 (780)
51 3eaq_A Heat resistant RNA depe 99.9 6.3E-24 2.2E-28 219.3 6.6 118 404-546 17-135 (212)
52 2oca_A DAR protein, ATP-depend 99.9 2.6E-23 8.9E-28 242.6 9.4 276 205-546 132-452 (510)
53 3i32_A Heat resistant RNA depe 99.9 2.5E-23 8.4E-28 225.6 6.3 129 389-546 3-132 (300)
54 2fwr_A DNA repair protein RAD2 99.9 5.7E-23 1.9E-27 237.4 5.4 261 204-546 111-451 (472)
55 3h1t_A Type I site-specific re 99.8 1.7E-21 5.8E-26 231.5 12.9 281 205-539 202-545 (590)
56 2rb4_A ATP-dependent RNA helic 99.8 5.3E-21 1.8E-25 191.2 12.7 137 388-546 7-144 (175)
57 2hjv_A ATP-dependent RNA helic 99.8 5.1E-21 1.8E-25 189.0 12.3 130 388-546 9-139 (163)
58 3jux_A Protein translocase sub 99.8 4.6E-21 1.6E-25 223.1 12.9 157 352-546 411-584 (822)
59 1fuk_A Eukaryotic initiation f 99.8 4.5E-21 1.5E-25 189.8 10.3 130 389-546 4-134 (165)
60 1t5i_A C_terminal domain of A 99.8 8.8E-21 3E-25 189.1 10.7 130 388-546 5-135 (172)
61 2p6n_A ATP-dependent RNA helic 99.8 1.7E-20 5.7E-25 190.4 9.6 141 376-546 14-158 (191)
62 2jgn_A DBX, DDX3, ATP-dependen 99.8 3E-20 1E-24 187.5 10.0 131 387-546 18-150 (185)
63 2d7d_A Uvrabc system protein B 99.8 4.4E-20 1.5E-24 221.2 10.4 110 417-546 444-553 (661)
64 2xau_A PRE-mRNA-splicing facto 99.8 2.5E-20 8.7E-25 226.6 6.0 134 40-174 432-576 (773)
65 2yjt_D ATP-dependent RNA helic 99.7 1.2E-20 4.2E-25 187.6 0.0 117 405-546 17-134 (170)
66 1c4o_A DNA nucleotide excision 99.7 7E-18 2.4E-22 202.2 15.4 109 418-546 439-547 (664)
67 3dmq_A RNA polymerase-associat 99.7 1.8E-18 6.3E-23 215.6 10.3 119 404-546 489-612 (968)
68 2w00_A HSDR, R.ECOR124I; ATP-b 99.7 1.9E-17 6.4E-22 205.5 10.0 285 204-546 303-706 (1038)
69 3llm_A ATP-dependent RNA helic 99.6 4.4E-17 1.5E-21 170.6 4.3 148 204-382 79-235 (235)
70 1z63_A Helicase of the SNF2/RA 99.6 5.1E-16 1.7E-20 180.4 9.3 106 417-546 340-450 (500)
71 3fmo_B ATP-dependent RNA helic 99.5 2E-14 6.7E-19 156.1 7.1 174 163-383 111-298 (300)
72 1z3i_X Similar to RAD54-like; 99.5 1.8E-13 6.1E-18 163.9 13.2 105 417-546 415-525 (644)
73 3i4u_A ATP-dependent RNA helic 99.4 8.8E-15 3E-19 155.4 -0.6 93 84-177 5-108 (270)
74 3mwy_W Chromo domain-containin 99.4 7E-13 2.4E-17 162.6 11.2 105 417-546 571-681 (800)
75 3iuy_A Probable ATP-dependent 99.4 1.2E-13 4E-18 143.3 3.4 147 206-370 62-220 (228)
76 3fe2_A Probable ATP-dependent 99.4 1.5E-13 5E-18 144.2 3.5 155 206-383 71-238 (242)
77 1z5z_A Helicase of the SNF2/RA 99.4 3.6E-13 1.2E-17 143.8 5.8 106 417-546 111-221 (271)
78 3ly5_A ATP-dependent RNA helic 99.3 3.7E-13 1.3E-17 143.1 4.1 142 206-370 96-254 (262)
79 2pl3_A Probable ATP-dependent 99.3 5.9E-13 2E-17 138.8 5.0 152 206-384 67-234 (236)
80 2ipc_A Preprotein translocase 99.3 4.1E-12 1.4E-16 151.0 12.6 81 207-307 98-182 (997)
81 3dkp_A Probable ATP-dependent 99.3 3.2E-13 1.1E-17 141.6 2.2 153 206-384 71-242 (245)
82 3bor_A Human initiation factor 99.3 7.5E-13 2.5E-17 138.4 4.2 141 206-370 72-226 (237)
83 3ber_A Probable ATP-dependent 99.3 9.9E-13 3.4E-17 138.7 4.9 138 206-370 85-239 (249)
84 1qde_A EIF4A, translation init 99.3 1.7E-12 5.9E-17 134.0 5.9 153 206-386 56-220 (224)
85 1wrb_A DJVLGB; RNA helicase, D 99.2 3.1E-12 1.1E-16 134.8 5.3 158 206-383 65-240 (253)
86 1q0u_A Bstdead; DEAD protein, 99.2 1.7E-12 5.9E-17 133.7 2.9 139 206-370 46-203 (219)
87 1vec_A ATP-dependent RNA helic 99.2 7.8E-12 2.7E-16 127.1 7.3 138 206-370 45-199 (206)
88 1t6n_A Probable ATP-dependent 99.2 3.5E-12 1.2E-16 131.4 3.0 140 206-370 56-212 (220)
89 2oxc_A Probable ATP-dependent 99.2 7.1E-12 2.4E-16 130.3 4.2 130 206-362 66-210 (230)
90 2gxq_A Heat resistant RNA depe 99.2 1.4E-11 4.6E-16 125.4 6.1 144 206-370 43-197 (207)
91 2vl7_A XPD; helicase, unknown 99.0 1.7E-10 5.9E-15 135.1 7.9 132 403-549 370-522 (540)
92 3c0t_A Mediator of RNA polymer 98.6 4.1E-09 1.4E-13 103.8 -0.1 178 137-348 3-201 (207)
93 3b6e_A Interferon-induced heli 98.4 2.6E-08 8.9E-13 101.3 -1.2 140 204-359 51-216 (216)
94 2va8_A SSO2462, SKI2-type heli 98.4 5.1E-08 1.8E-12 118.1 0.9 103 41-144 398-521 (715)
95 1rif_A DAR protein, DNA helica 98.4 1.6E-07 5.6E-12 100.3 4.3 121 206-360 133-262 (282)
96 3crv_A XPD/RAD3 related DNA he 98.3 2.6E-06 8.8E-11 100.0 13.6 133 402-549 378-532 (551)
97 2p6r_A Afuhel308 helicase; pro 98.3 1.8E-07 6E-12 113.1 3.7 104 40-144 377-502 (702)
98 2fz4_A DNA repair protein RAD2 97.8 1.3E-05 4.6E-10 83.3 4.5 111 204-360 111-228 (237)
99 2zj8_A DNA helicase, putative 97.8 3.9E-06 1.3E-10 101.7 0.1 104 40-144 376-505 (720)
100 3i32_A Heat resistant RNA depe 96.4 0.00019 6.5E-09 77.2 -3.7 70 41-110 125-213 (300)
101 3llm_A ATP-dependent RNA helic 96.3 0.0016 5.4E-08 67.2 3.2 69 625-695 136-204 (235)
102 4a15_A XPD helicase, ATP-depen 96.3 0.022 7.5E-07 67.4 12.9 183 350-549 375-585 (620)
103 3eaq_A Heat resistant RNA depe 95.7 0.00083 2.9E-08 68.3 -2.6 66 40-105 127-211 (212)
104 4a15_A XPD helicase, ATP-depen 92.6 0.024 8.3E-07 67.0 0.4 49 203-267 24-72 (620)
105 1w36_D RECD, exodeoxyribonucle 85.9 0.29 9.8E-06 57.7 2.4 49 204-267 167-217 (608)
106 2z83_A Helicase/nucleoside tri 84.2 1.2 4E-05 50.4 6.5 51 645-695 90-140 (459)
107 2jlq_A Serine protease subunit 83.9 1.2 4.1E-05 50.1 6.4 84 610-693 52-136 (451)
108 1gm5_A RECG; helicase, replica 82.4 1.1 3.6E-05 54.3 5.4 79 418-499 417-497 (780)
109 2whx_A Serine protease/ntpase/ 82.2 1.6 5.5E-05 51.3 6.7 86 610-695 219-305 (618)
110 3rc3_A ATP-dependent RNA helic 77.2 0.66 2.3E-05 55.2 1.2 64 41-114 435-500 (677)
111 2oxc_A Probable ATP-dependent 77.1 4.7 0.00016 40.4 7.5 76 417-499 91-173 (230)
112 3hgt_A HDA1 complex subunit 3; 76.7 12 0.00039 40.1 10.5 103 417-546 124-234 (328)
113 3oiy_A Reverse gyrase helicase 75.2 1.9 6.3E-05 47.6 4.1 80 416-499 62-146 (414)
114 1qde_A EIF4A, translation init 75.1 4.5 0.00015 40.2 6.6 75 417-499 81-162 (224)
115 3ber_A Probable ATP-dependent 73.8 6.8 0.00023 40.0 7.7 80 413-499 106-193 (249)
116 1vec_A ATP-dependent RNA helic 73.7 8.3 0.00028 37.5 8.1 76 418-499 71-153 (206)
117 1t6n_A Probable ATP-dependent 73.0 5.7 0.0002 39.3 6.8 77 418-499 82-165 (220)
118 4b3f_X DNA-binding protein smu 72.6 0.9 3.1E-05 53.8 0.7 46 205-267 209-254 (646)
119 3bor_A Human initiation factor 72.4 5 0.00017 40.4 6.3 77 417-499 97-180 (237)
120 3fe2_A Probable ATP-dependent 72.3 3.9 0.00013 41.4 5.5 75 418-499 102-183 (242)
121 2v1x_A ATP-dependent DNA helic 71.9 3.5 0.00012 48.1 5.6 59 418-483 84-144 (591)
122 3iuy_A Probable ATP-dependent 70.3 4.2 0.00014 40.6 5.1 75 417-499 93-174 (228)
123 2eyq_A TRCF, transcription-rep 68.7 6 0.00021 50.0 7.0 80 417-499 651-732 (1151)
124 2gxq_A Heat resistant RNA depe 68.6 5.6 0.00019 38.8 5.5 74 417-499 71-151 (207)
125 2v6i_A RNA helicase; membrane, 64.7 7.3 0.00025 43.4 6.1 87 609-695 34-121 (431)
126 1wrb_A DJVLGB; RNA helicase, D 63.9 11 0.00037 38.2 6.7 75 418-499 100-181 (253)
127 3o8b_A HCV NS3 protease/helica 63.3 3.8 0.00013 48.3 3.5 49 645-695 298-346 (666)
128 2pl3_A Probable ATP-dependent 63.2 9.3 0.00032 38.2 6.0 74 418-499 97-178 (236)
129 3lfu_A DNA helicase II; SF1 he 62.7 2.3 7.8E-05 50.0 1.4 56 204-272 25-80 (647)
130 1q0u_A Bstdead; DEAD protein, 59.2 9.7 0.00033 37.6 5.2 78 418-499 72-157 (219)
131 2i4i_A ATP-dependent RNA helic 58.3 26 0.00089 37.9 9.0 74 419-499 102-182 (417)
132 2gk6_A Regulator of nonsense t 57.5 4.3 0.00015 47.7 2.5 48 204-267 198-245 (624)
133 2db3_A ATP-dependent RNA helic 57.1 21 0.00072 39.5 8.1 75 418-499 129-210 (434)
134 4ddu_A Reverse gyrase; topoiso 56.8 6.1 0.00021 49.7 3.8 78 416-498 119-201 (1104)
135 1oyw_A RECQ helicase, ATP-depe 55.7 5 0.00017 46.0 2.6 75 418-499 65-146 (523)
136 3ly5_A ATP-dependent RNA helic 54.4 14 0.00048 37.9 5.6 75 418-499 126-208 (262)
137 1xti_A Probable ATP-dependent 53.3 21 0.00071 38.3 7.1 77 418-499 76-159 (391)
138 1fuu_A Yeast initiation factor 52.0 22 0.00074 38.1 7.0 75 417-499 88-169 (394)
139 1s2m_A Putative ATP-dependent 51.9 32 0.0011 37.0 8.3 76 417-499 88-170 (400)
140 2xzl_A ATP-dependent helicase 49.5 5.5 0.00019 48.3 1.7 49 204-268 378-426 (802)
141 2z0m_A 337AA long hypothetical 48.9 23 0.0008 36.8 6.5 74 418-499 56-136 (337)
142 2wjy_A Regulator of nonsense t 48.8 7 0.00024 47.3 2.5 47 205-267 375-421 (800)
143 3dkp_A Probable ATP-dependent 48.3 12 0.00043 37.5 4.0 76 418-499 98-182 (245)
144 2wv9_A Flavivirin protease NS2 47.8 13 0.00043 44.1 4.4 50 646-695 311-360 (673)
145 1hv8_A Putative ATP-dependent 47.1 37 0.0013 35.7 7.8 76 416-499 72-154 (367)
146 3a8t_A Adenylate isopentenyltr 46.4 6 0.0002 42.7 1.2 24 203-226 42-65 (339)
147 3vkw_A Replicase large subunit 44.4 6 0.00021 44.3 0.9 18 249-266 187-204 (446)
148 1yks_A Genome polyprotein [con 43.3 19 0.00063 40.2 4.7 49 647-695 79-127 (440)
149 3eiq_A Eukaryotic initiation f 41.8 50 0.0017 35.5 7.9 77 417-499 107-190 (414)
150 3foz_A TRNA delta(2)-isopenten 41.7 6.9 0.00024 41.7 0.8 28 199-226 8-35 (316)
151 1uaa_A REP helicase, protein ( 41.1 6.3 0.00022 46.6 0.4 56 204-272 18-73 (673)
152 2j0s_A ATP-dependent RNA helic 40.3 32 0.0011 37.2 6.0 76 417-499 104-186 (410)
153 1wp9_A ATP-dependent RNA helic 39.2 46 0.0016 36.3 7.2 75 417-499 51-132 (494)
154 3upu_A ATP-dependent DNA helic 38.7 8.4 0.00029 43.3 0.9 22 420-441 254-275 (459)
155 1pjr_A PCRA; DNA repair, DNA r 38.2 9.2 0.00031 45.7 1.2 56 204-272 27-82 (724)
156 3exa_A TRNA delta(2)-isopenten 37.8 9.1 0.00031 40.8 1.0 24 204-227 6-29 (322)
157 3fmo_B ATP-dependent RNA helic 37.7 27 0.00093 36.5 4.7 73 418-499 162-242 (300)
158 1gku_B Reverse gyrase, TOP-RG; 37.0 21 0.00071 44.6 4.2 62 417-483 98-163 (1054)
159 3tbk_A RIG-I helicase domain; 36.6 26 0.0009 39.5 4.7 75 418-499 52-134 (555)
160 3n70_A Transport activator; si 34.0 8.7 0.0003 35.5 0.0 14 202-215 25-38 (145)
161 2ykg_A Probable ATP-dependent 34.0 26 0.00089 41.2 4.2 40 645-684 112-153 (696)
162 4a2p_A RIG-I, retinoic acid in 33.5 35 0.0012 38.5 5.1 75 418-499 55-137 (556)
163 3crm_A TRNA delta(2)-isopenten 32.6 13 0.00043 39.9 1.0 27 200-226 4-30 (323)
164 2ze6_A Isopentenyl transferase 32.3 12 0.00041 38.3 0.8 20 205-224 5-24 (253)
165 1ly1_A Polynucleotide kinase; 32.1 13 0.00043 35.1 0.9 16 200-215 1-16 (181)
166 3d3q_A TRNA delta(2)-isopenten 31.9 11 0.00038 40.6 0.5 25 202-226 8-32 (340)
167 3u4q_A ATP-dependent helicase/ 31.8 15 0.0005 46.8 1.6 57 203-270 25-81 (1232)
168 1uf9_A TT1252 protein; P-loop, 31.7 12 0.00043 36.1 0.7 17 201-217 8-24 (203)
169 3tau_A Guanylate kinase, GMP k 30.6 18 0.0006 35.6 1.7 31 204-234 11-42 (208)
170 3e1s_A Exodeoxyribonuclease V, 30.1 12 0.00041 43.4 0.4 47 203-266 206-252 (574)
171 4a2q_A RIG-I, retinoic acid in 29.2 44 0.0015 40.2 5.2 75 418-499 296-378 (797)
172 3tr0_A Guanylate kinase, GMP k 29.0 15 0.00053 35.5 0.9 26 204-229 10-35 (205)
173 2qmh_A HPR kinase/phosphorylas 28.8 17 0.00058 36.1 1.1 20 204-223 37-56 (205)
174 2chg_A Replication factor C sm 28.8 20 0.00068 34.6 1.7 29 186-215 24-52 (226)
175 1jjv_A Dephospho-COA kinase; P 27.5 17 0.00058 35.4 0.9 21 202-222 3-23 (206)
176 1njg_A DNA polymerase III subu 27.1 18 0.00061 35.4 1.0 29 187-215 31-59 (250)
177 3ec2_A DNA replication protein 27.0 15 0.00051 35.0 0.3 14 202-215 39-52 (180)
178 1sxj_E Activator 1 40 kDa subu 26.7 24 0.00082 37.5 2.0 29 186-215 21-50 (354)
179 2eyu_A Twitching motility prot 26.4 15 0.00051 37.9 0.2 12 204-215 28-39 (261)
180 3co5_A Putative two-component 26.1 14 0.00047 34.0 -0.1 13 203-215 29-41 (143)
181 1jbk_A CLPB protein; beta barr 25.9 27 0.00094 32.6 2.1 28 187-215 30-57 (195)
182 1kag_A SKI, shikimate kinase I 25.4 20 0.00068 33.6 0.9 20 203-222 6-25 (173)
183 1kgd_A CASK, peripheral plasma 25.1 16 0.00056 34.9 0.2 18 204-221 8-25 (180)
184 3eph_A TRNA isopentenyltransfe 24.9 15 0.00052 40.5 -0.1 23 204-226 5-27 (409)
185 3nwn_A Kinesin-like protein KI 24.7 17 0.00057 39.5 0.2 22 192-215 98-119 (359)
186 1cke_A CK, MSSA, protein (cyti 24.7 21 0.0007 35.2 0.9 14 202-215 6-19 (227)
187 4gp7_A Metallophosphoesterase; 24.4 17 0.00058 34.5 0.2 12 204-215 12-23 (171)
188 1bg2_A Kinesin; motor protein, 24.4 18 0.0006 38.8 0.4 9 207-215 84-92 (325)
189 1f2t_A RAD50 ABC-ATPase; DNA d 24.4 17 0.00059 33.8 0.2 11 205-215 27-37 (149)
190 1tf5_A Preprotein translocase 24.1 89 0.0031 37.6 6.3 72 418-498 124-208 (844)
191 3kta_A Chromosome segregation 24.1 18 0.0006 34.4 0.3 11 205-215 30-40 (182)
192 1ry6_A Internal kinesin; kines 24.0 18 0.00062 39.3 0.3 9 207-215 91-99 (360)
193 3trf_A Shikimate kinase, SK; a 23.9 21 0.00073 33.9 0.8 20 203-222 7-26 (185)
194 3dc4_A Kinesin-like protein NO 23.8 18 0.00063 38.9 0.3 9 207-215 101-109 (344)
195 3c8u_A Fructokinase; YP_612366 23.7 19 0.00066 35.2 0.5 16 201-216 22-37 (208)
196 2fsf_A Preprotein translocase 23.5 90 0.0031 37.6 6.2 72 418-498 115-199 (853)
197 2kjq_A DNAA-related protein; s 23.3 20 0.0007 33.3 0.5 13 203-215 38-50 (149)
198 1qhx_A CPT, protein (chloramph 23.2 23 0.00079 33.3 0.9 20 203-222 5-24 (178)
199 3t15_A Ribulose bisphosphate c 23.0 28 0.00095 36.3 1.6 16 200-215 35-50 (293)
200 3jvv_A Twitching mobility prot 22.9 19 0.00065 39.0 0.2 13 203-215 125-137 (356)
201 1f9v_A Kinesin-like protein KA 22.9 20 0.00067 38.8 0.3 9 207-215 91-99 (347)
202 2vvg_A Kinesin-2; motor protei 22.9 20 0.00067 38.8 0.4 9 207-215 96-104 (350)
203 2h58_A Kinesin-like protein KI 22.9 20 0.00067 38.5 0.3 9 207-215 87-95 (330)
204 2y65_A Kinesin, kinesin heavy 22.7 20 0.00068 39.0 0.4 9 207-215 91-99 (365)
205 2r2a_A Uncharacterized protein 22.6 23 0.0008 34.9 0.8 13 205-217 9-21 (199)
206 3lnc_A Guanylate kinase, GMP k 22.5 26 0.00088 34.9 1.1 25 204-228 30-55 (231)
207 3b6e_A Interferon-induced heli 22.3 57 0.0019 31.4 3.6 59 417-483 81-140 (216)
208 3l9o_A ATP-dependent RNA helic 22.3 26 0.00087 44.0 1.3 35 645-679 267-302 (1108)
209 2iyv_A Shikimate kinase, SK; t 22.2 24 0.00083 33.5 0.8 19 204-222 5-23 (184)
210 3vaa_A Shikimate kinase, SK; s 21.9 24 0.00084 34.2 0.8 19 204-222 28-46 (199)
211 1v8k_A Kinesin-like protein KI 21.9 20 0.0007 39.5 0.2 9 207-215 161-169 (410)
212 3t0q_A AGR253WP; kinesin, alph 21.8 21 0.00073 38.5 0.4 9 207-215 92-100 (349)
213 1x88_A Kinesin-like protein KI 21.8 20 0.0007 38.8 0.2 10 206-215 94-103 (359)
214 2heh_A KIF2C protein; kinesin, 21.7 21 0.00073 39.1 0.3 9 207-215 141-149 (387)
215 2zfi_A Kinesin-like protein KI 21.7 21 0.00073 38.8 0.4 9 207-215 96-104 (366)
216 2w58_A DNAI, primosome compone 21.5 21 0.00072 34.5 0.2 14 202-215 55-68 (202)
217 1goj_A Kinesin, kinesin heavy 21.5 22 0.00075 38.5 0.4 10 206-215 86-95 (355)
218 3kb2_A SPBC2 prophage-derived 21.4 26 0.00089 32.5 0.9 18 204-221 4-21 (173)
219 2p65_A Hypothetical protein PF 21.4 19 0.00066 33.7 -0.1 26 189-215 32-57 (187)
220 3lre_A Kinesin-like protein KI 21.3 22 0.00075 38.5 0.3 9 207-215 112-120 (355)
221 1t5c_A CENP-E protein, centrom 21.3 21 0.00073 38.5 0.2 9 207-215 84-92 (349)
222 3asz_A Uridine kinase; cytidin 21.3 20 0.00068 35.0 -0.0 21 201-221 6-26 (211)
223 1ye8_A Protein THEP1, hypothet 21.3 22 0.00074 34.3 0.2 11 205-215 4-14 (178)
224 3b6u_A Kinesin-like protein KI 21.2 21 0.00073 38.8 0.2 9 207-215 108-116 (372)
225 3cob_A Kinesin heavy chain-lik 21.2 21 0.00073 38.8 0.2 9 207-215 86-94 (369)
226 1zp6_A Hypothetical protein AT 21.1 25 0.00085 33.5 0.7 20 203-222 11-30 (191)
227 1lvg_A Guanylate kinase, GMP k 21.1 22 0.00075 34.7 0.2 12 204-215 7-18 (198)
228 3syl_A Protein CBBX; photosynt 21.0 35 0.0012 35.3 1.9 16 201-216 67-82 (309)
229 2wbe_C Bipolar kinesin KRP-130 20.9 23 0.00078 38.7 0.4 9 207-215 107-115 (373)
230 1c4o_A DNA nucleotide excision 20.9 29 0.00098 40.9 1.3 25 248-272 55-79 (664)
231 2chq_A Replication factor C sm 20.8 37 0.0013 35.1 2.0 29 186-215 24-52 (319)
232 4a14_A Kinesin, kinesin-like p 20.8 23 0.00079 38.2 0.3 9 207-215 90-98 (344)
233 3bfn_A Kinesin-like protein KI 20.7 23 0.00079 38.8 0.3 9 207-215 105-113 (388)
234 2rep_A Kinesin-like protein KI 20.6 23 0.0008 38.6 0.4 9 207-215 122-130 (376)
235 1sxj_C Activator 1 40 kDa subu 20.5 33 0.0011 36.4 1.6 28 187-215 33-60 (340)
236 2zts_A Putative uncharacterize 20.5 48 0.0017 32.8 2.7 11 205-215 34-44 (251)
237 4etp_A Kinesin-like protein KA 20.3 24 0.00082 38.9 0.3 9 207-215 147-155 (403)
238 1d2n_A N-ethylmaleimide-sensit 20.3 28 0.00095 35.6 0.8 18 200-217 63-80 (272)
239 3lw7_A Adenylate kinase relate 20.2 23 0.0008 32.8 0.2 11 205-215 5-15 (179)
240 3gbj_A KIF13B protein; kinesin 20.1 23 0.0008 38.3 0.2 9 207-215 99-107 (354)
241 2cdn_A Adenylate kinase; phosp 20.1 34 0.0011 33.1 1.4 23 199-221 18-40 (201)
242 1qf9_A UMP/CMP kinase, protein 20.1 31 0.001 32.7 1.1 21 200-220 5-25 (194)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=7.2e-85 Score=793.39 Aligned_cols=552 Identities=30% Similarity=0.492 Sum_probs=488.8
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
++|+|||||| +++|.+...... ..|. ...+++++|+|++|.|++++++++++..+|.. +||.+
T Consensus 114 i~gpTGSGKT-------tllp~ll~~~~~----~~~~---g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~---vG~~i 176 (773)
T 2xau_A 114 FVGETGSGKT-------TQIPQFVLFDEM----PHLE---NTQVACTQPRRVAAMSVAQRVAEEMDVKLGEE---VGYSI 176 (773)
T ss_dssp EECCTTSSHH-------HHHHHHHHHHHC----GGGG---TCEEEEEESCHHHHHHHHHHHHHHTTCCBTTT---EEEEE
T ss_pred EECCCCCCHH-------HHHHHHHHHhcc----ccCC---CceEEecCchHHHHHHHHHHHHHHhCCchhhe---eccee
Confidence 5799999999 456655322111 1111 12479999999999999999999999999999 99999
Q ss_pred eccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEe
Q psy2470 286 RKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISS 357 (858)
Q Consensus 286 r~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~S 357 (858)
++++.....++|+|+|||++++ +..+..+.++.+| |+++ .|+++++++.+. ..+++.|+++||
T Consensus 177 ~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld----~d~~~~~l~~l~-----~~~~~~~iIl~S 247 (773)
T 2xau_A 177 RFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLA----TDILMGLLKQVV-----KRRPDLKIIIMS 247 (773)
T ss_dssp TTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHH----HHHHHHHHHHHH-----HHCTTCEEEEEE
T ss_pred ccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccc----hHHHHHHHHHHH-----HhCCCceEEEEe
Confidence 9988877889999999999999 7777888888877 7999 999999999987 445789999999
Q ss_pred cccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHH
Q psy2470 358 ATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGI 437 (858)
Q Consensus 358 AT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~ 437 (858)
||++.+.+++||. +++++.++++.+|++++|...+..++.+..+..+.+++...+.|++|||++|+++|+.+++.
T Consensus 248 AT~~~~~l~~~~~-----~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~ 322 (773)
T 2xau_A 248 ATLDAEKFQRYFN-----DAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRK 322 (773)
T ss_dssp SCSCCHHHHHHTT-----SCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHH
T ss_pred ccccHHHHHHHhc-----CCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHH
Confidence 9999999999998 68999999999999999998888888888888888888887789999999999999999999
Q ss_pred HHHhcc----CCCCcceEEEeccCCCCHHHHHHhcCCCC-----CCcEEEEEecCcccccCCCCCeeEEEcCCCccceec
Q psy2470 438 LKQYHN----QREDLKLLILPMHGSLPNNEQIKVFRPTP-----RAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWF 508 (858)
Q Consensus 438 L~~~~~----~~~~~~~~v~~LHg~l~q~~r~~v~~~f~-----~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~y 508 (858)
|++... .....++.+.++||+|++++|.++++.|+ +|.++||||||+||+|||||+|++|||+|+++.+.|
T Consensus 323 L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~y 402 (773)
T 2xau_A 323 ISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVY 402 (773)
T ss_dssp HHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEE
T ss_pred HHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceee
Confidence 985210 00124899999999999999999999999 999999999999999999999999999999999999
Q ss_pred cCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh--hhH-hhhhhhhhccCCCCCCCCCCCccccCcccchhhhHH
Q psy2470 509 NPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN--FMY-NRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSF 585 (858)
Q Consensus 509 d~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~--~~~-~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~ 585 (858)
|++.|++.|.+.|+|+++|.||+|||||.++|.||+|| ++| +.+++ + +. |||++++|.
T Consensus 403 d~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~-----~---~~---pEi~r~~L~-------- 463 (773)
T 2xau_A 403 NPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIE-----Q---SY---PEILRSNLS-------- 463 (773)
T ss_dssp ETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCS-----S---CC---CGGGGSCCH--------
T ss_pred ccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccc-----c---CC---CccccCcHH--------
Confidence 99999999999999999999999999999899999999 566 45666 6 66 999999999
Q ss_pred HHHHHhhhHhHhHhhhCCCCCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhccc
Q psy2470 586 FQYLLEAGWCYDTKLIGITEPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMT 661 (858)
Q Consensus 586 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~ 661 (858)
+.+|+++.+++.++..+.|+++ ++..|++.|..+|++ + +++. +| ++|+.|+++|+
T Consensus 464 -------~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgal-----d-~~~~---lT-----~lG~~~a~~pl 522 (773)
T 2xau_A 464 -------STVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACL-----D-DEGN---LT-----PLGRLASQFPL 522 (773)
T ss_dssp -------HHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSB-----C-TTSC---BC-----HHHHHHTTSSS
T ss_pred -------HHHHHHHHcCCCChhhccccCCCcHHHHHHHHHHHHHcCCc-----c-cCCC---cC-----hhhhhhccccC
Confidence 9999999999999988988876 789999999999999 6 5555 88 99999999999
Q ss_pred CcccccceeEeecccccccchhhHHHHHHHHHHhhhccccCCchhhHHHHhhcccCccccCCCChhhHHHHHHHHhcccc
Q psy2470 662 DPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEV 741 (858)
Q Consensus 662 dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~f~~ 741 (858)
||.++++ ++. +..++|.+++++|+|+|+++++|+.|.+.+ .+++.+|++|.+
T Consensus 523 ~p~~~~~------------------------l~~--~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~--~~~~~~~~~f~~ 574 (773)
T 2xau_A 523 DPMLAVM------------------------LIG--SFEFQCSQEILTIVAMLSVPNVFIRPTKDK--KRADDAKNIFAH 574 (773)
T ss_dssp CHHHHHH------------------------HHH--GGGGTCHHHHHHHHHHHTSCCCBCCCTTCH--HHHHHHHHTTCC
T ss_pred CHHHHHH------------------------HHh--hcccCchhHHHHHHHhcccCCcccCChHHH--HHHHHHHHhccC
Confidence 9999999 888 889999999999999999999999998877 778888999999
Q ss_pred CCCchhhHHHHHHHHHHcc---ch-HHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCC----CChHHHHHHHHh
Q psy2470 742 EQGDLLTLLNIFKFYEKQE---NK-KQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSP----RNTNAVLKCLTN 813 (858)
Q Consensus 742 ~~gDhltlLnif~~w~~~~---~~-~~wC~~~~Ln~~~L~~a~~ir~QL~~~l~~~~~~~~~~~----~~~~~i~k~l~a 813 (858)
..|||+++||+|++|.+.+ .+ ++||++||||+++|++|.++|.||.++|++.|++..++. .++..|++|||+
T Consensus 575 ~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 654 (773)
T 2xau_A 575 PDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALAS 654 (773)
T ss_dssp TTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSTTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCchhhHHHHHHHHHH
Confidence 9999999999999997655 44 789999999999999999999999999999998876543 345789999999
Q ss_pred cccccchhhccCCc-EEeecCCceEEEcCCCCCCCCCCCCeEEecC
Q psy2470 814 GFFSNAAYLHYSGV-YRTVRGNEDLYIHPSSVLYTLQQPQCTHLEG 858 (858)
Q Consensus 814 G~~~nvA~~~~~~~-Y~t~~~~~~v~iHPsS~L~~~~~P~wvvy~~ 858 (858)
|||+|||++.++|+ |.++.+++.|+|||+|+|. +.|+||||+.
T Consensus 655 g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~--~~~~~~v~~e 698 (773)
T 2xau_A 655 GFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLG--HDAEWVIYNE 698 (773)
T ss_dssp HHTTSEEEECCC--CEEETTTCCEEEECTTCCCC--TTCSEEEEEE
T ss_pred hChHhheeeccCCCcceEeeCCCEEEECCCcccC--CCCCEEEEEE
Confidence 99999999988876 9999999999999999995 3589999973
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.6e-42 Score=421.70 Aligned_cols=516 Identities=13% Similarity=0.104 Sum_probs=328.1
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHH--HHhCCcCccEeeeeeE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFL--TEMGCRMDFEYISRGY 283 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~--~e~g~~~g~~~~~vG~ 283 (858)
+.|+|||||| .++.+|.+.... .. ...+++++|+|+||.|+++++. .++|.+++.. +|+
T Consensus 51 v~apTGsGKT-----~~~~l~il~~~~------~~-----~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~---~G~ 111 (715)
T 2va8_A 51 LTSPTGSGKT-----LIAEMGIISFLL------KN-----GGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMT---SGD 111 (715)
T ss_dssp EECCTTSCHH-----HHHHHHHHHHHH------HS-----CSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEEC---CSC
T ss_pred EEcCCCCcHH-----HHHHHHHHHHHH------HC-----CCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEE---eCC
Confidence 5799999999 333333222111 01 1257999999999999999882 3456777666 676
Q ss_pred EEeccceeecceeEEEeecCcccc-CCCccC-CCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-SGVEPI-SQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~-L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
..+.+... ..++|+|+|||+|.+ +..++. ++++++| ..+. .+.....++.+...+ ++.|+|+|
T Consensus 112 ~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~----~~~~~~~l~~i~~~~-----~~~~ii~l 181 (715)
T 2va8_A 112 YDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN----DPERGPVVESVTIRA-----KRRNLLAL 181 (715)
T ss_dssp SSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG----CTTTHHHHHHHHHHH-----HTSEEEEE
T ss_pred CCCchhhc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC----CcccchHHHHHHHhc-----ccCcEEEE
Confidence 65555433 368999999999999 555554 7788777 3333 222233444444222 27899999
Q ss_pred eccc-CHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCC--------------ccch--HHHHHHHHHHHHhhCCCC
Q psy2470 357 SATV-DAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDP--------------VVNY--VQGVVDTAIKIHESMPVG 419 (858)
Q Consensus 357 SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~--------------~~~~--~~~~~~~l~~i~~~~~~g 419 (858)
|||+ +.+.+++|++ ++.+..+++.+|++..+.... .... ...+...+.+.+. +.+
T Consensus 182 SATl~n~~~~~~~l~------~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 253 (715)
T 2va8_A 182 SATISNYKQIAKWLG------AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNG 253 (715)
T ss_dssp ESCCTTHHHHHHHHT------CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTC
T ss_pred cCCCCCHHHHHHHhC------CCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCC
Confidence 9999 6999999997 566777777777765432111 0000 1344555555554 468
Q ss_pred CEEEEcCCHHHHHHHHHHHHHhccC---CC--------------------------CcceEEEeccCCCCHHHHHHhcCC
Q psy2470 420 DILAFVIGLEQIEHIIGILKQYHNQ---RE--------------------------DLKLLILPMHGSLPNNEQIKVFRP 470 (858)
Q Consensus 420 ~iLVFl~t~~~i~~l~~~L~~~~~~---~~--------------------------~~~~~v~~LHg~l~q~~r~~v~~~ 470 (858)
++|||++|+++++.+++.|.+.... .. ..+..+.++||+|++++|..+++.
T Consensus 254 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~ 333 (715)
T 2va8_A 254 QVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEG 333 (715)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHH
Confidence 9999999999999999999854210 00 001248889999999999999999
Q ss_pred CCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC---CceEEEeh-
Q psy2470 471 TPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR---SGHVYRKN- 546 (858)
Q Consensus 471 f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g---~G~~~rL~- 546 (858)
|++|.++||||||++|+|||||++++|||+ ...||++.+.. ..|+|.++|.||+|||||.| +|.||+++
T Consensus 334 f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 406 (715)
T 2va8_A 334 FRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVR 406 (715)
T ss_dssp HHTTCSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEEEEECS
T ss_pred HHcCCCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEEEeC
Confidence 999999999999999999999999999996 34588766543 57999999999999999999 79999999
Q ss_pred -hh-HhhhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHHHHhhhHhH---hHhhhCCCCCcccccC---CchHHH
Q psy2470 547 -FM-YNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLEAGWCY---DTKLIGITEPRRISVT---SLANRV 618 (858)
Q Consensus 547 -~~-~~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l~~~~~~l---~~~~~~~~~~~~~~~l---~~a~~~ 618 (858)
.+ +..+.++++ .++||+++++|.....++..+..+...+.+. ....+ .+ ..+.+. ...+..
T Consensus 407 ~~~~~~~~~~~~l--------~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~-l~--~~~~~~~~~~~~~~~ 475 (715)
T 2va8_A 407 DKEDVDRVFKKYV--------LSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENF-AY--ESLLAKQLVDVYFDR 475 (715)
T ss_dssp CGGGHHHHHHHTT--------SSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHH-HT--TSSSCHHHHHHHHHH
T ss_pred CchHHHHHHHHHH--------cCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHH-HH--hhHHHhhcchHHHHH
Confidence 22 334444222 2349999999986556665554444332110 00001 00 001111 125889
Q ss_pred HHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHHhhhc
Q psy2470 619 SEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKE 698 (858)
Q Consensus 619 a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~~~~ 698 (858)
|++.|..+|++ + .++....+| ++|+.++.+|+||.++++ ++. +
T Consensus 476 al~~L~~~g~i-----~-~~~~~~~~t-----~lG~~~~~~~~~~~~~~~------------------------~~~--~ 518 (715)
T 2va8_A 476 AIRWLLEHSFI-----K-EEGNTFALT-----NFGKRVADLYINPFTADI------------------------IRK--G 518 (715)
T ss_dssp HHHHHHHTTSE-----E-ECSSEEEEC-----HHHHHHHHHTCCHHHHHH------------------------HHH--H
T ss_pred HHHHHHHCcCE-----e-ecCCeEeeC-----hHHHHHHHHcCCHhHHHH------------------------HHH--H
Confidence 99999999999 5 222222356 999999999999999998 544 3
Q ss_pred ccc---CCchhhHHHHhhcc-cCccccCCCChhhHHHHHHHHh----c-ccc-C-CC-------chhhHHHHHHHHHHcc
Q psy2470 699 RDF---ECSDEIASILSLLQ-VQDIFIKPSSGALSLKARVLRR----N-FEV-E-QG-------DLLTLLNIFKFYEKQE 760 (858)
Q Consensus 699 ~~~---~c~~~~~~i~a~l~-~~~~f~~~~~~~~~~~~~~~~~----~-f~~-~-~g-------DhltlLnif~~w~~~~ 760 (858)
... .|..+++.++|+.+ .+++|+++.+.. ....... . +.. + .. .|+-..-+.++|.+..
T Consensus 519 ~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~ 595 (715)
T 2va8_A 519 LEGHKASCELAYLHLLAFTPDGPLVSVGRNEEE---ELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEV 595 (715)
T ss_dssp HHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHH---HHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhccCCCHHHHHHHhhcCcccccCccChHHHH---HHHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCC
Confidence 232 78889999887766 577887664332 1111100 0 100 0 00 2444455667788777
Q ss_pred chHHHHHhccCCHHHHHHHHHH----HHHHHHHHHhcCCCCCCCCCChHHHHHHHHhccccc
Q psy2470 761 NKKQFCHKYFFNYKVLKRAAEL----KNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSN 818 (858)
Q Consensus 761 ~~~~wC~~~~Ln~~~L~~a~~i----r~QL~~~l~~~~~~~~~~~~~~~~i~k~l~aG~~~n 818 (858)
.-..+|++..+....|....+. -..+.+++..+|.... ......+.+.|..|..+.
T Consensus 596 ~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~~~~~~~--~~~l~~l~~rl~~gv~~e 655 (715)
T 2va8_A 596 DEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNEH--ADKLRILNLRVRDGIKEE 655 (715)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTCCGG
T ss_pred CHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHhCcHHH--HHHHHHHHHHHHcCCChh
Confidence 6678999998876665555544 4444445555543200 011223455666666544
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=3.3e-41 Score=409.15 Aligned_cols=517 Identities=13% Similarity=0.068 Sum_probs=337.2
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHH--HHhCCcCccEeeeee
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFL--TEMGCRMDFEYISRG 282 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~--~e~g~~~g~~~~~vG 282 (858)
-+.|+|||||| .++.+|.+.. +.. ...+++++|+|+||.|+++++. .++|.+++.. +|
T Consensus 44 lv~apTGsGKT-----~~~~l~il~~----~~~--------~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~---~G 103 (702)
T 2p6r_A 44 LLAMPTAAGKT-----LLAEMAMVRE----AIK--------GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGIS---TG 103 (702)
T ss_dssp EEECSSHHHHH-----HHHHHHHHHH----HHT--------TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEE---CS
T ss_pred EEEcCCccHHH-----HHHHHHHHHH----HHh--------CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEE---eC
Confidence 35799999999 3333332221 100 1257999999999999999883 2345666666 66
Q ss_pred EEEeccceeecceeEEEeecCcccc-CCCccC-CCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 283 YMFRKGRMKILVSKIFKMSQGKPSD-SGVEPI-SQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 283 ~~vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~-L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
+..+.+... ..++|+|+|||++.+ +..++. ++++++| ..+..+.-...+..++..+. ..+++.|+|+
T Consensus 104 ~~~~~~~~~-~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~-----~~~~~~~ii~ 177 (702)
T 2p6r_A 104 DYESRDEHL-GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMR-----RMNKALRVIG 177 (702)
T ss_dssp SCBCCSSCS-TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHH-----HHCTTCEEEE
T ss_pred CCCcchhhc-cCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHH-----hcCcCceEEE
Confidence 655554433 368999999999998 555544 7777776 22220000111122222222 2356899999
Q ss_pred Eeccc-CHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHH---------HHHHHHHHHHhhCCCCCEEEEc
Q psy2470 356 SSATV-DAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQ---------GVVDTAIKIHESMPVGDILAFV 425 (858)
Q Consensus 356 ~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~---------~~~~~l~~i~~~~~~g~iLVFl 425 (858)
||||+ +.+.+++|++ ++++..+++..|++..+.......+.+ .....+.+.+. +.+++|||+
T Consensus 178 lSATl~n~~~~~~~l~------~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~ 249 (702)
T 2p6r_A 178 LSATAPNVTEIAEWLD------ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFE 249 (702)
T ss_dssp EECCCTTHHHHHHHTT------CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEEC
T ss_pred ECCCcCCHHHHHHHhC------CCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEc
Confidence 99999 5999999987 577778888888877654322111110 03444555543 468999999
Q ss_pred CCHHHHHHHHHHHHHhccC--CC---------------------CcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEec
Q psy2470 426 IGLEQIEHIIGILKQYHNQ--RE---------------------DLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIAT 482 (858)
Q Consensus 426 ~t~~~i~~l~~~L~~~~~~--~~---------------------~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvAT 482 (858)
+|+++++.+++.|.+.... .. ..+..+.++||+|++++|..+++.|++|.++|||||
T Consensus 250 ~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT 329 (702)
T 2p6r_A 250 STRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVAT 329 (702)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEEC
Confidence 9999999999999853110 00 001347789999999999999999999999999999
Q ss_pred CcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC---CceEEEeh--hhHhhhhhhhh
Q psy2470 483 NIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR---SGHVYRKN--FMYNRLFIHFC 557 (858)
Q Consensus 483 dvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g---~G~~~rL~--~~~~~l~~~~~ 557 (858)
+++|+|||+|++++||++ ...|| |. ..|.|.++|.||+|||||.| +|.||.++ .+++.+.+++
T Consensus 330 ~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~- 397 (702)
T 2p6r_A 330 PTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRY- 397 (702)
T ss_dssp STTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTT-
T ss_pred cHHhccCCCCceEEEEcC----ceeeC---CC----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHH-
Confidence 999999999999999995 35587 22 48999999999999999999 69999999 4444444422
Q ss_pred ccCCCCCCCCCCCccccCcccchhhhHHHHHHHhhhHhH---hHhhh-CCCCC-ccc-ccCCchHHHHHHHHHhcCCeee
Q psy2470 558 VSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLEAGWCY---DTKLI-GITEP-RRI-SVTSLANRVSEELRTTLGHTVG 631 (858)
Q Consensus 558 ~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l~~~~~~l---~~~~~-~~~~~-~~~-~~l~~a~~~a~~~L~~lg~lv~ 631 (858)
..++||+++++|.....++..+..+...+.+. ....+ ..+-+ ++. ......+..+++.|..+|++
T Consensus 398 -------l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i-- 468 (702)
T 2p6r_A 398 -------IFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMV-- 468 (702)
T ss_dssp -------TSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSE--
T ss_pred -------hcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCe--
Confidence 23449999999986556665444433322110 00000 00000 000 12233788999999999999
Q ss_pred eeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHHhhhcccc--CCchhhHH
Q psy2470 632 YTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDF--ECSDEIAS 709 (858)
Q Consensus 632 y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~~~~~~~--~c~~~~~~ 709 (858)
+ .+ ....+| ++|+.++.+|+||.++++ ++. +... .|...++.
T Consensus 469 ---~-~~-~~~~~t-----~lG~~~~~~~~~~~~~~~------------------------~~~--~~~~~~~~~~~~l~ 512 (702)
T 2p6r_A 469 ---V-EA-AHLAPT-----KLGSLVSRLYIDPLTGFI------------------------FHD--VLSRMELSDIGALH 512 (702)
T ss_dssp ---E-ES-SSEEEC-----HHHHHHHHTTCCHHHHHH------------------------HHH--HTTTCCCCHHHHHH
T ss_pred ---e-EC-CeeccC-----hHHHHHHHHhCCHHHHHH------------------------HHH--HhhcccCCHHHHHH
Confidence 5 22 112357 999999999999999998 666 4444 78888999
Q ss_pred HHhhccc-CccccCCCChhhHHHHHHHHhcc-ccC--CC-------chhhHHHHHHHHHHccchHHHHHhccCCHHH---
Q psy2470 710 ILSLLQV-QDIFIKPSSGALSLKARVLRRNF-EVE--QG-------DLLTLLNIFKFYEKQENKKQFCHKYFFNYKV--- 775 (858)
Q Consensus 710 i~a~l~~-~~~f~~~~~~~~~~~~~~~~~~f-~~~--~g-------DhltlLnif~~w~~~~~~~~wC~~~~Ln~~~--- 775 (858)
++|+.+. +++++++.+.............+ ..+ .. .|+-..-+.++|.+...-...|.++++...-
T Consensus 513 ~i~~~~e~~~i~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~ 592 (702)
T 2p6r_A 513 LICRTPDMERLTVRKTDSWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRR 592 (702)
T ss_dssp HHHHSTTSCCCCCCTTTHHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHH
T ss_pred HhhCCcccccCCCCCchHHHHHHHHhccccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHH
Confidence 8887764 67888876622111111111122 111 11 3555556778888766667788888875544
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhccccc
Q psy2470 776 -LKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSN 818 (858)
Q Consensus 776 -L~~a~~ir~QL~~~l~~~~~~~~~~~~~~~~i~k~l~aG~~~n 818 (858)
+..|..+-.-+.+++...|.. ....+.+.+..|.+..
T Consensus 593 i~~~a~~l~~a~~~i~~~~g~~------~l~~l~~ri~~gv~~~ 630 (702)
T 2p6r_A 593 IVETAEWLSNAMNRIAEEVGNT------SVSGLTERIKHGVKEE 630 (702)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC------SSTTHHHHHHHTCCGG
T ss_pred HHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHcCCCcc
Confidence 444555555566666666654 2223455566665543
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3e-39 Score=393.02 Aligned_cols=519 Identities=12% Similarity=0.040 Sum_probs=321.9
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHH--HHhCCcCccEeeeeeE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFL--TEMGCRMDFEYISRGY 283 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~--~e~g~~~g~~~~~vG~ 283 (858)
+.|+|||||| .++.+|.+..... . ...+++++|+|+||.|+++++. .++|.+++.. +|
T Consensus 44 v~apTGsGKT-----~~~~l~il~~~~~------~-----~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~---~G- 103 (720)
T 2zj8_A 44 ISIPTASGKT-----LIAEIAMVHRILT------Q-----GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMA---TG- 103 (720)
T ss_dssp EECCGGGCHH-----HHHHHHHHHHHHH------H-----CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEE---CS-
T ss_pred EEcCCccHHH-----HHHHHHHHHHHHh------C-----CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEe---cC-
Confidence 5799999999 4444443321110 0 1257999999999999999985 2345555555 33
Q ss_pred EEeccceeecceeEEEeecCcccc-CCCccC-CCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-SGVEPI-SQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~-L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
...........++|+|+|||++.. +..++. ++++++| ..+.. .+.-.. +..+...+ +++.|+|+|
T Consensus 104 ~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~---~~r~~~-~~~ll~~l----~~~~~ii~l 175 (720)
T 2zj8_A 104 DYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGS---RDRGAT-LEVILAHM----LGKAQIIGL 175 (720)
T ss_dssp CSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC---TTTHHH-HHHHHHHH----BTTBEEEEE
T ss_pred CCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCC---CcccHH-HHHHHHHh----hcCCeEEEE
Confidence 223333333578999999999988 544443 6777766 33220 222222 22222222 237999999
Q ss_pred eccc-CHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccch-------HHHHHHHHHHHHhhCCCCCEEEEcCCH
Q psy2470 357 SATV-DAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNY-------VQGVVDTAIKIHESMPVGDILAFVIGL 428 (858)
Q Consensus 357 SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~-------~~~~~~~l~~i~~~~~~g~iLVFl~t~ 428 (858)
|||+ +.+.+++|++ ++.+..+.+..|++..+.......+ ...+...+.+.+. +.+++|||++|+
T Consensus 176 SATl~n~~~~~~~l~------~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr 247 (720)
T 2zj8_A 176 SATIGNPEELAEWLN------AELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMR 247 (720)
T ss_dssp ECCCSCHHHHHHHTT------EEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCH
T ss_pred cCCcCCHHHHHHHhC------CcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCH
Confidence 9999 8899999987 4556666666666654322111000 1123344444443 368999999999
Q ss_pred HHHHHHHHHHHHhccC-CC-------------------------CcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEec
Q psy2470 429 EQIEHIIGILKQYHNQ-RE-------------------------DLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIAT 482 (858)
Q Consensus 429 ~~i~~l~~~L~~~~~~-~~-------------------------~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvAT 482 (858)
++++.+++.|.+.... .. .-...+.++||+|++++|..+++.|++|.++|||||
T Consensus 248 ~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT 327 (720)
T 2zj8_A 248 RKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVAT 327 (720)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEEC
T ss_pred HHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEEC
Confidence 9999999999853110 00 001238899999999999999999999999999999
Q ss_pred CcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC---CceEEEeh--hhHhhhhhhhh
Q psy2470 483 NIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR---SGHVYRKN--FMYNRLFIHFC 557 (858)
Q Consensus 483 dvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g---~G~~~rL~--~~~~~l~~~~~ 557 (858)
+++|+|||+|++++||+.+ ..|| ..| ..|.|.++|.||+|||||.| +|.||.++ .+++...++++
T Consensus 328 ~~l~~Gvdip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~ 397 (720)
T 2zj8_A 328 PTLSAGINTPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYI 397 (720)
T ss_dssp STTGGGCCCCBSEEEECCS----EECC-SSS-----CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHT
T ss_pred cHhhccCCCCceEEEEcCC----eeec-CCC-----CccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHh
Confidence 9999999999999999954 4477 233 26999999999999999998 59999999 33333333222
Q ss_pred ccCCCCCCCCCCCccccCcccchhhhHHHHHHHhhhHh------HhH--hhhCCCCCcccccCCchHHHHHHHHHhcCCe
Q psy2470 558 VSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLEAGWC------YDT--KLIGITEPRRISVTSLANRVSEELRTTLGHT 629 (858)
Q Consensus 558 ~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l~~~~~~------l~~--~~~~~~~~~~~~~l~~a~~~a~~~L~~lg~l 629 (858)
. ++||.+++.+.....++..+......+.. ... ..+...+...-..+...+..+++.|...|++
T Consensus 398 ~--------~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i 469 (720)
T 2zj8_A 398 F--------GKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFI 469 (720)
T ss_dssp T--------SCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSE
T ss_pred c--------CCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHHCCCe
Confidence 1 23777888887555666555444332211 000 0011001111111223678899999999998
Q ss_pred eeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHHhhhccc----cCCch
Q psy2470 630 VGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERD----FECSD 705 (858)
Q Consensus 630 v~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~~~~~~----~~c~~ 705 (858)
+.+++.....| ++|+.++.+|+||.++++ ++. +.. ..|..
T Consensus 470 -----~~~~~~~~~~t-----~lG~~~~~~~~~~~~~~~------------------------~~~--~~~~~~~~~~~~ 513 (720)
T 2zj8_A 470 -----EISLEDKIRPL-----SLGIRTAKLYIDPYTAKM------------------------FKD--KMEEVVKDPNPI 513 (720)
T ss_dssp -----EECTTSCEEEC-----HHHHHHHHHTCCHHHHHH------------------------HHH--HHHHHHHSCCHH
T ss_pred -----eECCCCcEeeC-----hHHHHHHHHcCCHHHHHH------------------------HHH--HHHhhccCCCHH
Confidence 41222222356 999999999999999998 443 222 37999
Q ss_pred hhHHHHhhccc-CccccCCCChhhHHHHHHH-Hh--cc----ccCCC----------chhhHHHHHHHHHHccchHHHHH
Q psy2470 706 EIASILSLLQV-QDIFIKPSSGALSLKARVL-RR--NF----EVEQG----------DLLTLLNIFKFYEKQENKKQFCH 767 (858)
Q Consensus 706 ~~~~i~a~l~~-~~~f~~~~~~~~~~~~~~~-~~--~f----~~~~g----------DhltlLnif~~w~~~~~~~~wC~ 767 (858)
+++.|+|+.+. +++|+++.+... -.+.. +. ++ .-..+ .|+-..-+.++|.+...-..-|.
T Consensus 514 ~~l~i~~~~~e~~~i~~r~~e~~~--l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~ 591 (720)
T 2zj8_A 514 GIFHLISLTPDITPFNYSKREFER--LEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVE 591 (720)
T ss_dssp HHHHHHHTSTTCCCCCCCHHHHHH--HHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHhccCccccccccCHHHHHH--HHHHHHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999885 778887644331 11111 10 01 00111 23334445567766554445566
Q ss_pred hccCCHH----HHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhccccc
Q psy2470 768 KYFFNYK----VLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSN 818 (858)
Q Consensus 768 ~~~Ln~~----~L~~a~~ir~QL~~~l~~~~~~~~~~~~~~~~i~k~l~aG~~~n 818 (858)
+..+... .+..|..+-..+.+++..+|... .......+.++|..|....
T Consensus 592 ~~~~~~gdl~~~~~~a~~l~~a~~~i~~~~g~~~--~~~~l~~l~~rl~~gv~~e 644 (720)
T 2zj8_A 592 KYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYE--IVDYLETLRVRVKYGIREE 644 (720)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCGG--GHHHHHHHHHHHHHTCCGG
T ss_pred HhCCChHhHHHHHHHHHHHHHHHHHHHHHcCcHH--HHHHHHHHHHHHHcCCCcc
Confidence 6655443 34555555566666666666521 0111223556666666543
No 5
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.5e-39 Score=342.42 Aligned_cols=200 Identities=30% Similarity=0.509 Sum_probs=188.8
Q ss_pred hHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHH
Q psy2470 615 ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKIL 694 (858)
Q Consensus 615 a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll 694 (858)
++..|++.|..+|++ + +++. +| ++|+.|++||+||+++++ ++
T Consensus 19 ~l~~A~~~L~~LgAl-----d-~~g~---lT-----~lG~~ma~lPl~P~lakm------------------------Ll 60 (270)
T 3i4u_A 19 TLITAMEQLYTLGAL-----D-DEGL---LT-----RLGRRMAEFPLEPMLCKM------------------------LI 60 (270)
T ss_dssp HHHHHHHHHHHHTSB-----C-TTSC---BC-----HHHHHHTTSCSCHHHHHH------------------------HH
T ss_pred HHHHHHHHHHHcCCc-----C-CCCC---cc-----HHHHHHHhCCCCHHHHHH------------------------HH
Confidence 889999999999999 6 5555 89 999999999999999999 88
Q ss_pred hhhccccCCchhhHHHHhhcccCccccCCCChhhHHHHHHHHhccccCCCchhhHHHHHHHHHHccchHHHHHhccCCHH
Q psy2470 695 KDKERDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTLLNIFKFYEKQENKKQFCHKYFFNYK 774 (858)
Q Consensus 695 ~~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~f~~~~gDhltlLnif~~w~~~~~~~~wC~~~~Ln~~ 774 (858)
. +..++|.+++++|+|+|+++++|+.|.+++ ++++..|++|.+..|||+++||+|++|++.+.+++||++||||++
T Consensus 61 ~--a~~~~c~~~~l~iaA~Ls~~~~f~~p~~~~--~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~ 136 (270)
T 3i4u_A 61 M--SVHLGCSEEMLTIVSMLSVQNVFYRPKDKQ--ALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQAR 136 (270)
T ss_dssp H--HHHTTCHHHHHHHHHHHTSSCCBCCCGGGH--HHHHHHHHTTCBTTBHHHHHHHHHHHHHHTTTCHHHHHHTTBCHH
T ss_pred H--hhhcCCHHHHHHHHHHHCCCccccCCchhH--HHHHHHHHHccCCCChHHHHHHHHHHHHHcCchhhHHHHhcCCHH
Confidence 8 888999999999999999999999998776 778889999999999999999999999998888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhcccccchhhccCCcEEeecCCceEEEcCCCCCCCCCCCCeE
Q psy2470 775 VLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNAAYLHYSGVYRTVRGNEDLYIHPSSVLYTLQQPQCT 854 (858)
Q Consensus 775 ~L~~a~~ir~QL~~~l~~~~~~~~~~~~~~~~i~k~l~aG~~~nvA~~~~~~~Y~t~~~~~~v~iHPsS~L~~~~~P~wv 854 (858)
+|++|.++|+||.+++++.+++.++++.+.+.|++|||+|||+|||++++++.|+++.+++.|+|||||+|++ ++|+||
T Consensus 137 ~l~~~~~ir~QL~~~l~~~~~~~~s~~~~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~~~~v~iHPsS~L~~-~~p~wv 215 (270)
T 3i4u_A 137 SLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFN-RQPEWV 215 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCTTCTHHHHHHHHHHHGGGEEEECSSSSEEETTTCCEEEECTTSTTTT-SCCSEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCcchHHHHHHHHHHHhHHHHheeCCCCceEEccCCCEEEECchhhhcC-CCCCEE
Confidence 9999999999999999999998888888999999999999999999999888999999999999999999997 578999
Q ss_pred Eec
Q psy2470 855 HLE 857 (858)
Q Consensus 855 vy~ 857 (858)
||+
T Consensus 216 vy~ 218 (270)
T 3i4u_A 216 VYH 218 (270)
T ss_dssp EEE
T ss_pred EEE
Confidence 997
No 6
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=5.3e-36 Score=343.27 Aligned_cols=314 Identities=15% Similarity=0.130 Sum_probs=216.0
Q ss_pred cccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCC
Q psy2470 162 NVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMG 241 (858)
Q Consensus 162 ~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g 241 (858)
.....|..+|...+...+.+.+ +-+.|+|||||| +||.+|.+..... ... .
T Consensus 74 ~g~~~pt~iQ~~ai~~i~~g~d--------------------~i~~a~TGsGKT-----~a~~lpil~~l~~---~~~-~ 124 (434)
T 2db3_A 74 SGYKIPTPIQKCSIPVISSGRD--------------------LMACAQTGSGKT-----AAFLLPILSKLLE---DPH-E 124 (434)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCC--------------------EEEECCTTSSHH-----HHHHHHHHHHHHH---SCC-C
T ss_pred cCCCCCCHHHHHHHHHHhcCCC--------------------EEEECCCCCCch-----HHHHHHHHHHHHh---ccc-c
Confidence 3344566666666665554421 224699999999 6666665543221 111 0
Q ss_pred CCCCccCEEEccchHHHHHHHHHHHHHHh---CCcCccEeeeeeEEEeccceeecceeEEEeecCcccc-CCC-ccCCCc
Q psy2470 242 VGDKARPTIVRSSIDVACSCTVVEFLTEM---GCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-SGV-EPISQS 316 (858)
Q Consensus 242 ~g~~~~~~LVl~PtR~la~qva~~v~~e~---g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~-~~~-~~~L~~ 316 (858)
.......+||++|||+||.|+++++.+.. +.+++..+|+..... .......+++|+|+|||+|++ +.. ...+.+
T Consensus 125 ~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~-~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~ 203 (434)
T 2db3_A 125 LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRH-QNECITRGCHVVIATPGRLLDFVDRTFITFED 203 (434)
T ss_dssp CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHH-HHHHHTTCCSEEEECHHHHHHHHHTTSCCCTT
T ss_pred cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHH-HHHHhhcCCCEEEEChHHHHHHHHhCCccccc
Confidence 11233568999999999999988775432 333433322211100 011112457999999999999 332 334666
Q ss_pred ccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccC--HHHHHHHhhcccCCCCcEEEecC---e
Q psy2470 317 YLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVD--AEEICQFYNISASSNATILSVKG---H 385 (858)
Q Consensus 317 ~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~--~~~~~~~~~~~~~~~~~~i~v~g---~ 385 (858)
+.++ ++++ .+|...+.+.+. .+ ..+++.|+++||||++ ++.++..+.. ++..+.+.. .
T Consensus 204 ~~~lVlDEah~~~~----~gf~~~~~~i~~-~~--~~~~~~q~l~~SAT~~~~~~~~~~~~l~----~~~~i~~~~~~~~ 272 (434)
T 2db3_A 204 TRFVVLDEADRMLD----MGFSEDMRRIMT-HV--TMRPEHQTLMFSATFPEEIQRMAGEFLK----NYVFVAIGIVGGA 272 (434)
T ss_dssp CCEEEEETHHHHTS----TTTHHHHHHHHH-CT--TSCSSCEEEEEESCCCHHHHHHHHTTCS----SCEEEEESSTTCC
T ss_pred CCeEEEccHhhhhc----cCcHHHHHHHHH-hc--CCCCCceEEEEeccCCHHHHHHHHHhcc----CCEEEEecccccc
Confidence 6655 8888 555544444433 11 2367899999999994 4556654442 344444432 2
Q ss_pred ecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHH
Q psy2470 386 LYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQI 465 (858)
Q Consensus 386 ~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~ 465 (858)
...+.+.+......+ +...+.+++.... +++|||++++++++.+++.|++. ++.+..+||++++++|.
T Consensus 273 ~~~i~~~~~~~~~~~----k~~~l~~~l~~~~-~~~lVF~~t~~~a~~l~~~L~~~-------~~~~~~lhg~~~~~~R~ 340 (434)
T 2db3_A 273 CSDVKQTIYEVNKYA----KRSKLIEILSEQA-DGTIVFVETKRGADFLASFLSEK-------EFPTTSIHGDRLQSQRE 340 (434)
T ss_dssp CTTEEEEEEECCGGG----HHHHHHHHHHHCC-TTEEEECSSHHHHHHHHHHHHHT-------TCCEEEESTTSCHHHHH
T ss_pred ccccceEEEEeCcHH----HHHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhC-------CCCEEEEeCCCCHHHHH
Confidence 234555554433222 3344555555544 34999999999999999999977 88999999999999999
Q ss_pred HhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEE
Q psy2470 466 KVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYR 544 (858)
Q Consensus 466 ~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~r 544 (858)
++++.|++|+.+||||||+++||||||+|++||| || .|.+.++|+||+|||||.|. |.|+.
T Consensus 341 ~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~--------~d----------~p~~~~~y~qriGR~gR~g~~G~a~~ 402 (434)
T 2db3_A 341 QALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN--------YD----------MPSKIDDYVHRIGRTGRVGNNGRATS 402 (434)
T ss_dssp HHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE--------SS----------CCSSHHHHHHHHTTSSCTTCCEEEEE
T ss_pred HHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE--------EC----------CCCCHHHHHHHhcccccCCCCCEEEE
Confidence 9999999999999999999999999999999999 76 67889999999999999987 99999
Q ss_pred eh
Q psy2470 545 KN 546 (858)
Q Consensus 545 L~ 546 (858)
++
T Consensus 403 ~~ 404 (434)
T 2db3_A 403 FF 404 (434)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.8e-33 Score=318.11 Aligned_cols=290 Identities=13% Similarity=0.120 Sum_probs=202.8
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+.. + .. +.....+|+++|||+||.|+++++.+......+.. +++..
T Consensus 69 v~apTGsGKT-----~~~~~~~~~~----~---~~--~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~---~~~~~ 131 (412)
T 3fht_A 69 AQSQSGTGKT-----AAFVLAMLSQ----V---EP--ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELK---LAYAV 131 (412)
T ss_dssp EECCTTSCHH-----HHHHHHHHHH----C---CT--TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCC---EEEEC
T ss_pred EECCCCchHH-----HHHHHHHHHH----h---hh--cCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccce---EEEee
Confidence 4699999999 4444443321 1 11 12233689999999999999887755443323444 55544
Q ss_pred ecccee---ecceeEEEeecCcccc-CCC--ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceE
Q psy2470 286 RKGRMK---ILVSKIFKMSQGKPSD-SGV--EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKL 353 (858)
Q Consensus 286 r~~~~~---~~~t~I~v~TpGrLl~-~~~--~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~ 353 (858)
+..... ...++|+|+|||+|++ +.. ...+.++.+| ++++. .++...+..... ..+++.|+
T Consensus 132 ~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~---~~~~~~~~~~~~-----~~~~~~~~ 203 (412)
T 3fht_A 132 RGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIAT---QGHQDQSIRIQR-----MLPRNCQM 203 (412)
T ss_dssp TTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHST---TTTHHHHHHHHH-----TSCTTCEE
T ss_pred cCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhc---CCcHHHHHHHHh-----hCCCCceE
Confidence 433322 2357999999999999 433 2344566665 45440 122222222222 55678999
Q ss_pred EEEecccCH--HHHHHHhhcccCCCCcEEEecCee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCH
Q psy2470 354 IISSATVDA--EEICQFYNISASSNATILSVKGHL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGL 428 (858)
Q Consensus 354 il~SAT~~~--~~~~~~~~~~~~~~~~~i~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~ 428 (858)
++||||++. ..+...+.. ++..+.+.... ..+...+..... ...+...+..++.....+++|||++++
T Consensus 204 i~~SAT~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~lvf~~~~ 276 (412)
T 3fht_A 204 LLFSATFEDSVWKFAQKVVP----DPNVIKLKREEETLDTIKQYYVLCSS---RDEKFQALCNLYGAITIAQAMIFCHTR 276 (412)
T ss_dssp EEEESCCCHHHHHHHHHHSS----SCEEECCCGGGSSCTTEEEEEEECSS---HHHHHHHHHHHHHHHSSSEEEEECSSH
T ss_pred EEEEeecCHHHHHHHHHhcC----CCeEEeeccccccccCceEEEEEcCC---hHHHHHHHHHHHhhcCCCCEEEEeCCH
Confidence 999999954 345544442 44444443322 234444443322 234555566666666678999999999
Q ss_pred HHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceec
Q psy2470 429 EQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWF 508 (858)
Q Consensus 429 ~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~y 508 (858)
++++.+++.|++. ++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||++++|..+.+
T Consensus 277 ~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~ 349 (412)
T 3fht_A 277 KTASWLAAELSKE-------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG 349 (412)
T ss_dssp HHHHHHHHHHHHT-------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSS
T ss_pred HHHHHHHHHHHhC-------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCC
Confidence 9999999999987 788999999999999999999999999999999999999999999999999665444332
Q ss_pred cCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 509 NPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 509 d~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+.|.++|.||+|||||.|. |.|+.++
T Consensus 350 ------------~~s~~~~~Qr~GR~gR~g~~g~~~~~~ 376 (412)
T 3fht_A 350 ------------NPDNETYLHRIGRTGRFGKRGLAVNMV 376 (412)
T ss_dssp ------------SBCHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred ------------CcchheeecccCcccCCCCCceEEEEE
Confidence 2678999999999999987 9999999
No 8
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=335.44 Aligned_cols=315 Identities=12% Similarity=0.117 Sum_probs=101.0
Q ss_pred cccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCC
Q psy2470 162 NVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMG 241 (858)
Q Consensus 162 ~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g 241 (858)
.....|..+|...+...+.+...+ +-+.|+|||||| .+|.+|.+.. + ..
T Consensus 110 ~g~~~p~~~Q~~ai~~il~~~~~~------------------~l~~a~TGsGKT-----~~~~l~il~~----l---~~- 158 (479)
T 3fmp_B 110 MGFNRPSKIQENALPLMLAEPPQN------------------LIAQSQSGTGKT-----AAFVLAMLSQ----V---EP- 158 (479)
T ss_dssp TTCCSCCHHHHHHHHHHTSBSCCE------------------EEEECCSSSSHH-----HHHHHHHHTT----C---CT-
T ss_pred cCCCCCCHHHHHHHHHHHcCCCCc------------------EEEEcCCCCchh-----HHHHHHHHHH----H---hh-
Confidence 334456666666665555542222 224699999999 4444443321 1 11
Q ss_pred CCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccce---eecceeEEEeecCcccc-CCCcc--CCC
Q psy2470 242 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRM---KILVSKIFKMSQGKPSD-SGVEP--ISQ 315 (858)
Q Consensus 242 ~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~---~~~~t~I~v~TpGrLl~-~~~~~--~L~ 315 (858)
+....++||++|||+||.|+++++.+......+.. +++.++.... .....+|+|+|||+|++ +.+.. .+.
T Consensus 159 -~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~ 234 (479)
T 3fmp_B 159 -ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELK---LAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (479)
T ss_dssp -TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCC---EEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGG
T ss_pred -cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCce---EEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcc
Confidence 12234689999999999999887765544333333 4444443322 22346899999999999 44422 345
Q ss_pred cccEE------EecCCCCCc-hhhhhHHHHHHHHhcccCCCCceEEEEecccCH--HHHHHHhhcccCCCCcEEEecCee
Q psy2470 316 SYLVE------LSILAPGGQ-DVIGEDMKAFAEQLKPLKRTQLKLIISSATVDA--EEICQFYNISASSNATILSVKGHL 386 (858)
Q Consensus 316 ~~~vl------R~l~~~~~~-d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~~--~~~~~~~~~~~~~~~~~i~v~g~~ 386 (858)
++.+| ++++ . .+........ ...+++.|+++||||++. ..++..+.. ++..+.+....
T Consensus 235 ~~~~iViDEah~~~~----~~~~~~~~~~i~-----~~~~~~~~~i~~SAT~~~~~~~~~~~~~~----~~~~i~~~~~~ 301 (479)
T 3fmp_B 235 KIKVFVLDEADVMIA----TQGHQDQSIRIQ-----RMLPRNCQMLLFSATFEDSVWKFAQKVVP----DPNVIKLKREE 301 (479)
T ss_dssp GCCEEEECCHHHHHT----STTHHHHHHHHH-----TTSCTTSEEEEEESCCCHHHHHHHHHHSS----SEEEEEEC---
T ss_pred cCCEEEEECHHHHhh----cCCcHHHHHHHH-----hhCCccceEEEEeCCCCHHHHHHHHHHcC----CCeEEeccccc
Confidence 66655 5554 2 2222222222 255678999999999954 455555442 44455554332
Q ss_pred c---ceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHH
Q psy2470 387 Y---PVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNE 463 (858)
Q Consensus 387 ~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~ 463 (858)
. .+.+.+..... ...+...+..++.....+++||||++++.++.+++.|... ++.+..+||++++.+
T Consensus 302 ~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~-------~~~v~~lh~~~~~~~ 371 (479)
T 3fmp_B 302 ETLDTIKQYYVLCSS---RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE-------GHQVALLSGEMMVEQ 371 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcCCceEEEEEeCC---HHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhC-------CccEEEecCCCCHHH
Confidence 2 22223322221 1234445555555556789999999999999999999876 888999999999999
Q ss_pred HHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceE
Q psy2470 464 QIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHV 542 (858)
Q Consensus 464 r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~ 542 (858)
|.++++.|++|+.+|||||+++++|||+|+|++|||+++|....+ +.+..+|.||+|||||.|. |.|
T Consensus 372 R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~------------~~s~~~~~Qr~GRagR~g~~G~~ 439 (479)
T 3fmp_B 372 RAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG------------NPDNETYLHRIGRTGRFGKRGLA 439 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCcc------------CCCHHHHHHHhcccccCCCCceE
Confidence 999999999999999999999999999999999999554432221 2567899999999999987 999
Q ss_pred EEeh
Q psy2470 543 YRKN 546 (858)
Q Consensus 543 ~rL~ 546 (858)
+.++
T Consensus 440 i~~~ 443 (479)
T 3fmp_B 440 VNMV 443 (479)
T ss_dssp ----
T ss_pred EEEE
Confidence 9999
No 9
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1e-33 Score=320.85 Aligned_cols=282 Identities=12% Similarity=0.201 Sum_probs=199.4
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+.. +.. .....++||++|||+||.|+++++.+ ++...+.. ++...
T Consensus 79 v~a~TGsGKT-----~~~~~~~~~~----l~~-----~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~---~~~~~ 140 (410)
T 2j0s_A 79 AQSQSGTGKT-----ATFSISVLQC----LDI-----QVRETQALILAPTRELAVQIQKGLLA-LGDYMNVQ---CHACI 140 (410)
T ss_dssp EECCTTSSHH-----HHHHHHHHHT----CCT-----TSCSCCEEEECSSHHHHHHHHHHHHH-HTTTTTCC---EEEEC
T ss_pred EECCCCCCch-----HHHHHHHHHH----Hhh-----ccCCceEEEEcCcHHHHHHHHHHHHH-HhccCCeE---EEEEE
Confidence 4699999999 4444443321 110 11234689999999999999888754 45444544 44333
Q ss_pred ecccee------ecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCc
Q psy2470 286 RKGRMK------ILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQL 351 (858)
Q Consensus 286 r~~~~~------~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~ 351 (858)
++.... ..+++|+|+|||+|++ +.. ...+..+.++ ++++ .++...+.+.+. ..+++.
T Consensus 141 g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~----~~~~~~~~~i~~-----~~~~~~ 211 (410)
T 2j0s_A 141 GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLN----KGFKEQIYDVYR-----YLPPAT 211 (410)
T ss_dssp TTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTS----TTTHHHHHHHHT-----TSCTTC
T ss_pred CCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHh----hhhHHHHHHHHH-----hCccCc
Confidence 332211 1357999999999998 333 3345556655 6777 554443333332 556789
Q ss_pred eEEEEecccCHH--HHHHHhhcccCCCCcEEEecCee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcC
Q psy2470 352 KLIISSATVDAE--EICQFYNISASSNATILSVKGHL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVI 426 (858)
Q Consensus 352 q~il~SAT~~~~--~~~~~~~~~~~~~~~~i~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~ 426 (858)
|+++||||+..+ .+...+.. ++..+.+.... ..+..++......+ .+...+..++.....+++|||++
T Consensus 212 ~~i~~SAT~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~~~~~~~~~~lVf~~ 284 (410)
T 2j0s_A 212 QVVLISATLPHEILEMTNKFMT----DPIRILVKRDELTLEGIKQFFVAVEREE---WKFDTLCDLYDTLTITQAVIFCN 284 (410)
T ss_dssp EEEEEESCCCHHHHTTGGGTCS----SCEEECCCGGGCSCTTEEEEEEEESSTT---HHHHHHHHHHHHHTSSEEEEECS
T ss_pred eEEEEEcCCCHHHHHHHHHHcC----CCEEEEecCccccCCCceEEEEEeCcHH---hHHHHHHHHHHhcCCCcEEEEEc
Confidence 999999999543 22222221 33334333221 23445544433222 23445555555555679999999
Q ss_pred CHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccce
Q psy2470 427 GLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKAR 506 (858)
Q Consensus 427 t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~ 506 (858)
++++++.+++.|++. ++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 285 ~~~~~~~l~~~L~~~-------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~------- 350 (410)
T 2j0s_A 285 TKRKVDWLTEKMREA-------NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN------- 350 (410)
T ss_dssp SHHHHHHHHHHHHHT-------TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE-------
T ss_pred CHHHHHHHHHHHHhC-------CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEE-------
Confidence 999999999999977 788999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 507 WFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 507 ~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|| .|.+.++|.||+|||||.|. |.|+.++
T Consensus 351 -~~----------~p~s~~~~~Qr~GR~gR~g~~g~~~~~~ 380 (410)
T 2j0s_A 351 -YD----------LPNNRELYIHRIGRSGRYGRKGVAINFV 380 (410)
T ss_dssp -SS----------CCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred -EC----------CCCCHHHHHHhcccccCCCCceEEEEEe
Confidence 66 57889999999999999986 9999999
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.2e-34 Score=323.78 Aligned_cols=282 Identities=15% Similarity=0.200 Sum_probs=187.5
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+.. +.. .....++||++|||+|+.|+++++.+ ++...+.. ++...
T Consensus 82 v~a~TGsGKT-----~~~~~~~~~~----~~~-----~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~---~~~~~ 143 (414)
T 3eiq_A 82 AQAQSGTGKT-----ATFAISILQQ----IEL-----DLKATQALVLAPTRELAQQIQKVVMA-LGDYMGAS---CHACI 143 (414)
T ss_dssp ECCCSCSSSH-----HHHHHHHHHH----CCT-----TSCSCCEEEECSSHHHHHHHHHHHHH-HGGGSCCC---EEECC
T ss_pred EECCCCCccc-----HHHHHHHHHH----Hhh-----cCCceeEEEEeChHHHHHHHHHHHHH-HhcccCce---EEEEE
Confidence 4699999999 4444432221 111 01223589999999999999887754 33334444 33333
Q ss_pred ecccee-------ecceeEEEeecCcccc-CCCc-cCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCC
Q psy2470 286 RKGRMK-------ILVSKIFKMSQGKPSD-SGVE-PISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 286 r~~~~~-------~~~t~I~v~TpGrLl~-~~~~-~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~ 350 (858)
+..... ...++|+|+|||+|++ +..+ ..+..+.+| ++++ .++...+.+.+. ..+++
T Consensus 144 ~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~----~~~~~~~~~~~~-----~~~~~ 214 (414)
T 3eiq_A 144 GGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS----RGFKDQIYDIFQ-----KLNSN 214 (414)
T ss_dssp CCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHH----TTTHHHHHHHHT-----TSCTT
T ss_pred CCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhc----cCcHHHHHHHHH-----hCCCC
Confidence 322221 1457999999999999 4332 345555555 5666 444444444433 56778
Q ss_pred ceEEEEecccCH--HHHHHHhhcccCCCCcEEEecCee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEc
Q psy2470 351 LKLIISSATVDA--EEICQFYNISASSNATILSVKGHL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFV 425 (858)
Q Consensus 351 ~q~il~SAT~~~--~~~~~~~~~~~~~~~~~i~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl 425 (858)
.|+++||||++. ..+...+.. ++..+.+.... ..+...+......+ .+...+..++.....+++|||+
T Consensus 215 ~~~i~~SAT~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~lvf~ 287 (414)
T 3eiq_A 215 TQVVLLSATMPSDVLEVTKKFMR----DPIRILVKKEELTLEGIRQFYINVEREE---WKLDTLCDLYETLTITQAVIFI 287 (414)
T ss_dssp CEEEEECSCCCHHHHHHHTTTCS----SCEEECCCCCCCCTTSCCEEEEECSSST---THHHHHHHHHHSSCCSSCEEEC
T ss_pred CeEEEEEEecCHHHHHHHHHHcC----CCEEEEecCCccCCCCceEEEEEeChHH---hHHHHHHHHHHhCCCCcEEEEe
Confidence 999999999954 333333331 34444443322 23344444433222 2455667777777788999999
Q ss_pred CCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccc
Q psy2470 426 IGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKA 505 (858)
Q Consensus 426 ~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~ 505 (858)
+++++++.+++.|.+. ++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 288 ~~~~~~~~l~~~l~~~-------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~------ 354 (414)
T 3eiq_A 288 NTRRKVDWLTEKMHAR-------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN------ 354 (414)
T ss_dssp SCHHHHHHHHHHHHTT-------TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEE------
T ss_pred CCHHHHHHHHHHHHhc-------CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEE------
Confidence 9999999999999876 788999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 506 RWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 506 ~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+ .|.+..+|.||+|||||.|. |.||.++
T Consensus 355 --~~----------~p~s~~~~~Qr~GR~gR~g~~g~~~~~~ 384 (414)
T 3eiq_A 355 --YD----------LPTNRENYIHRIGRGGRFGRKGVAINMV 384 (414)
T ss_dssp --SS----------CCSSTHHHHHHSCCC-------CEEEEE
T ss_pred --eC----------CCCCHHHhhhhcCcccCCCCCceEEEEE
Confidence 66 57788999999999999986 9999999
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.98 E-value=5.6e-32 Score=303.68 Aligned_cols=289 Identities=17% Similarity=0.164 Sum_probs=199.1
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+||||||+ ++.+|.+.. +... .....+|+++||++|+.|+++++. +++...+.. ++...
T Consensus 49 v~a~TGsGKT~-----~~~~~~~~~----~~~~-----~~~~~~lil~P~~~L~~q~~~~~~-~~~~~~~~~---~~~~~ 110 (395)
T 3pey_A 49 AQSQSGTGKTA-----AFSLTMLTR----VNPE-----DASPQAICLAPSRELARQTLEVVQ-EMGKFTKIT---SQLIV 110 (395)
T ss_dssp EECCTTSCHHH-----HHHHHHHHH----CCTT-----CCSCCEEEECSSHHHHHHHHHHHH-HHTTTSCCC---EEEES
T ss_pred EECCCCCcHHH-----HHHHHHHHH----hccC-----CCCccEEEECCCHHHHHHHHHHHH-HHhcccCee---EEEEe
Confidence 46999999993 333332221 1111 123368999999999999998774 444444433 33222
Q ss_pred e--ccceeecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 286 R--KGRMKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 286 r--~~~~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
. ........++|+|+|||+|++ +.. ...+.++.+| ++.+ ..++...+.+... ..+++.|+++
T Consensus 111 ~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~---~~~~~~~~~~~~~-----~~~~~~~~i~ 182 (395)
T 3pey_A 111 PDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLD---QQGLGDQCIRVKR-----FLPKDTQLVL 182 (395)
T ss_dssp TTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHH---STTHHHHHHHHHH-----TSCTTCEEEE
T ss_pred cCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcC---ccccHHHHHHHHH-----hCCCCcEEEE
Confidence 2 222223468999999999998 433 3346666665 3333 0122222222222 5567899999
Q ss_pred EecccCH--HHHHHHhhcccCCCCcEEEecCee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHH
Q psy2470 356 SSATVDA--EEICQFYNISASSNATILSVKGHL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQ 430 (858)
Q Consensus 356 ~SAT~~~--~~~~~~~~~~~~~~~~~i~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~ 430 (858)
||||+.. ..+...+.. ++..+.+.... ..+...+.... ....+...+..+......+++|||++++++
T Consensus 183 ~SAT~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~ 255 (395)
T 3pey_A 183 FSATFADAVRQYAKKIVP----NANTLELQTNEVNVDAIKQLYMDCK---NEADKFDVLTELYGLMTIGSSIIFVATKKT 255 (395)
T ss_dssp EESCCCHHHHHHHHHHSC----SCEEECCCGGGCSCTTEEEEEEECS---SHHHHHHHHHHHHTTTTSSEEEEECSCHHH
T ss_pred EEecCCHHHHHHHHHhCC----CCeEEEccccccccccccEEEEEcC---chHHHHHHHHHHHHhccCCCEEEEeCCHHH
Confidence 9999943 455554442 34444433322 22334443322 223455566666666677899999999999
Q ss_pred HHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccC
Q psy2470 431 IEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNP 510 (858)
Q Consensus 431 i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~ 510 (858)
++.+++.|++. ++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+++++..
T Consensus 256 ~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~----- 323 (395)
T 3pey_A 256 ANVLYGKLKSE-------GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTL----- 323 (395)
T ss_dssp HHHHHHHHHHT-------TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBC-----
T ss_pred HHHHHHHHHhc-------CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCC-----
Confidence 99999999977 788999999999999999999999999999999999999999999999999554321
Q ss_pred CCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 511 NTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 511 ~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
...+.|.++|.||+|||||.|. |.|+.++
T Consensus 324 -------~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~ 353 (395)
T 3pey_A 324 -------ANGQADPATYIHRIGRTGRFGRKGVAISFV 353 (395)
T ss_dssp -------TTSSBCHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred -------CcCCCCHHHhhHhccccccCCCCceEEEEE
Confidence 1134699999999999999987 9999998
No 12
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.98 E-value=1.6e-32 Score=323.78 Aligned_cols=264 Identities=17% Similarity=0.095 Sum_probs=186.0
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .+|.+|.+. . ..++||++|||++|.|++++++++++..++.. +|+..
T Consensus 237 v~ApTGSGKT-----~a~~l~ll~----------~-----g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~---vG~~~ 293 (666)
T 3o8b_A 237 LHAPTGSGKS-----TKVPAAYAA----------Q-----GYKVLVLNPSVAATLGFGAYMSKAHGIDPNIR---TGVRT 293 (666)
T ss_dssp EECCTTSCTT-----THHHHHHHH----------T-----TCCEEEEESCHHHHHHHHHHHHHHHSCCCEEE---CSSCE
T ss_pred EEeCCchhHH-----HHHHHHHHH----------C-----CCeEEEEcchHHHHHHHHHHHHHHhCCCeeEE---ECcEe
Confidence 4699999999 444443221 1 12589999999999999999999999888777 66533
Q ss_pred eccceeecceeEEEeecCccccCCCccCCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCce--EEEEec
Q psy2470 286 RKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLK--LIISSA 358 (858)
Q Consensus 286 r~~~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q--~il~SA 358 (858)
...+++|+|+|||||+. .....++++++| ++++ .++...+.+.+. ..+...| +++|||
T Consensus 294 -----~~~~~~IlV~TPGrLl~-~~~l~l~~l~~lVlDEAH~l~----~~~~~~l~~Il~-----~l~~~~~~llil~SA 358 (666)
T 3o8b_A 294 -----ITTGAPVTYSTYGKFLA-DGGCSGGAYDIIICDECHSTD----STTILGIGTVLD-----QAETAGARLVVLATA 358 (666)
T ss_dssp -----ECCCCSEEEEEHHHHHH-TTSCCTTSCSEEEETTTTCCS----HHHHHHHHHHHH-----HTTTTTCSEEEEEES
T ss_pred -----ccCCCCEEEECcHHHHh-CCCcccCcccEEEEccchhcC----ccHHHHHHHHHH-----hhhhcCCceEEEECC
Confidence 34568999999999976 112345556655 8888 666544443333 3333344 778899
Q ss_pred ccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHH
Q psy2470 359 TVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGIL 438 (858)
Q Consensus 359 T~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L 438 (858)
|++.. +.. ..+.+..+.-...+ ...+.... .. ......+++|||++|+++++.+++.|
T Consensus 359 T~~~~-----i~~---~~p~i~~v~~~~~~-~i~~~~~~-~~------------l~~~~~~~vLVFv~Tr~~ae~la~~L 416 (666)
T 3o8b_A 359 TPPGS-----VTV---PHPNIEEVALSNTG-EIPFYGKA-IP------------IEAIRGGRHLIFCHSKKKCDELAAKL 416 (666)
T ss_dssp SCTTC-----CCC---CCTTEEEEECBSCS-SEEETTEE-EC------------GGGSSSSEEEEECSCHHHHHHHHHHH
T ss_pred CCCcc-----ccc---CCcceEEEeecccc-hhHHHHhh-hh------------hhhccCCcEEEEeCCHHHHHHHHHHH
Confidence 99532 110 01222222111000 01111000 00 11235789999999999999999999
Q ss_pred HHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCcccee----ccCCCCC
Q psy2470 439 KQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARW----FNPNTLT 514 (858)
Q Consensus 439 ~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~----yd~~~g~ 514 (858)
++. ++.+.++||+|+|++ |+++..+||||||+|||||||| |++|||+|+.+... |||+.++
T Consensus 417 ~~~-------g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl 481 (666)
T 3o8b_A 417 SGL-------GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTI 481 (666)
T ss_dssp HTT-------TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEE
T ss_pred HhC-------CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccc
Confidence 976 889999999999986 3446669999999999999997 99999999888665 6677777
Q ss_pred CcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 515 NSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 515 ~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
... ..|+|.++|+||+|||||.++|. |+||
T Consensus 482 ~~~-~~P~s~~syiQRiGRtGRg~~G~-i~lv 511 (666)
T 3o8b_A 482 ETT-TVPQDAVSRSQRRGRTGRGRRGI-YRFV 511 (666)
T ss_dssp EEE-EEECBHHHHHHHHTTBCSSSCEE-EEES
T ss_pred ccc-cCcCCHHHHHHHhccCCCCCCCE-EEEE
Confidence 554 58999999999999999955599 9998
No 13
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.98 E-value=1.1e-32 Score=312.59 Aligned_cols=294 Identities=13% Similarity=0.058 Sum_probs=193.5
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccC---------CCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCcc
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIG---------QPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDF 276 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~---------~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~ 276 (858)
+.|+|||||| .++.+|.+........ ....+.......+||++|||+||.|+++++.+. +...+.
T Consensus 57 v~a~TGsGKT-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~ 130 (417)
T 2i4i_A 57 ACAQTGSGKT-----AAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKF-SYRSRV 130 (417)
T ss_dssp EECCTTSCHH-----HHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHH-HTTSSC
T ss_pred EEcCCCCHHH-----HHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHH-hCcCCc
Confidence 4699999999 5555554432211000 000011122346899999999999999887543 323333
Q ss_pred EeeeeeEEEeccce------eecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHH
Q psy2470 277 EYISRGYMFRKGRM------KILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQ 342 (858)
Q Consensus 277 ~~~~vG~~vr~~~~------~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~ 342 (858)
. ++...+.... ...+++|+|+|||+|++ +.. ...+..+.+| ++++ .++...+...+. .
T Consensus 131 ~---~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~----~~~~~~~~~i~~-~ 202 (417)
T 2i4i_A 131 R---PCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD----MGFEPQIRRIVE-Q 202 (417)
T ss_dssp C---EEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHH----TTCHHHHHHHHT-S
T ss_pred e---EEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhc----cCcHHHHHHHHH-h
Confidence 3 2222222111 12457999999999998 433 2346666655 5555 333332222211 1
Q ss_pred hcccCCCCceEEEEecccC--HHHHHHHhhcccCCCCcEEEecCe---ecceeEEEecCCccchHHHHHHHHHHHHhhC-
Q psy2470 343 LKPLKRTQLKLIISSATVD--AEEICQFYNISASSNATILSVKGH---LYPVSVYYSNDPVVNYVQGVVDTAIKIHESM- 416 (858)
Q Consensus 343 l~~~~~~~~q~il~SAT~~--~~~~~~~~~~~~~~~~~~i~v~g~---~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~- 416 (858)
.........|+++||||+. .+.+...+.. ++..+.+... ...+...+......+ +...+.+++...
T Consensus 203 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~l~~~l~~~~ 274 (417)
T 2i4i_A 203 DTMPPKGVRHTMMFSATFPKEIQMLARDFLD----EYIFLAVGRVGSTSENITQKVVWVEESD----KRSFLLDLLNATG 274 (417)
T ss_dssp SSCCCBTTBEEEEEESCCCHHHHHHHHHHCS----SCEEEEEC----CCSSEEEEEEECCGGG----HHHHHHHHHHTCC
T ss_pred ccCCCcCCcEEEEEEEeCCHHHHHHHHHHcC----CCEEEEeCCCCCCccCceEEEEEeccHh----HHHHHHHHHHhcC
Confidence 1001123689999999994 3455554442 3333333221 123344443333222 334455555544
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeE
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVY 496 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~ 496 (858)
..+++|||++++++++.+++.|++. ++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|+|++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~-------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~ 347 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE-------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKH 347 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC-------CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCE
Confidence 4678999999999999999999976 888999999999999999999999999999999999999999999999
Q ss_pred EEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 497 VIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 497 VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
||+ || .|.|..+|.||+|||||.|. |.||.++
T Consensus 348 Vi~--------~~----------~p~s~~~~~Qr~GR~gR~g~~g~~~~~~ 380 (417)
T 2i4i_A 348 VIN--------FD----------LPSDIEEYVHRIGRTGRVGNLGLATSFF 380 (417)
T ss_dssp EEE--------SS----------CCSSHHHHHHHHTTBCC--CCEEEEEEE
T ss_pred EEE--------Ec----------CCCCHHHHHHhcCccccCCCCceEEEEE
Confidence 999 66 57889999999999999987 9999999
No 14
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1e-32 Score=346.36 Aligned_cols=298 Identities=14% Similarity=0.078 Sum_probs=207.8
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
+-+.|+||||||+ ++.+|.+... . ...++++++|||+||.|.+.++.+.++ . +|+
T Consensus 202 vLV~ApTGSGKTl-----va~l~i~~~l-------~-----~g~rvlvl~PtraLa~Q~~~~l~~~~~-~-------Vgl 256 (1108)
T 3l9o_A 202 VLVSAHTSAGKTV-----VAEYAIAQSL-------K-----NKQRVIYTSPIKALSNQKYRELLAEFG-D-------VGL 256 (1108)
T ss_dssp EEEECCSSSHHHH-----HHHHHHHHHH-------H-----TTCEEEEEESSHHHHHHHHHHHHHHTS-S-------EEE
T ss_pred EEEECCCCCChHH-----HHHHHHHHHH-------h-----cCCeEEEEcCcHHHHHHHHHHHHHHhC-C-------ccE
Confidence 4567999999994 3334322211 1 112579999999999999999988776 3 454
Q ss_pred EEeccceeecceeEEEeecCcccc-CCCcc-CCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-SGVEP-ISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~~~~~-~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
.. ++......++|+|||||+|++ +..+. .+.++.+| ++.+ .++...+...+. ..+++.|+++
T Consensus 257 lt-Gd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d----~~rg~~~e~ii~-----~l~~~~qvl~ 326 (1108)
T 3l9o_A 257 MT-GDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD----KERGVVWEETII-----LLPDKVRYVF 326 (1108)
T ss_dssp EC-SSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS----HHHHHHHHHHHH-----HSCTTSEEEE
T ss_pred Ee-CccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccc----cchHHHHHHHHH-----hcCCCceEEE
Confidence 22 233344568999999999999 44443 36666666 6766 554444444443 5578899999
Q ss_pred Eeccc-CHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCcc----------c-----h------------------
Q psy2470 356 SSATV-DAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVV----------N-----Y------------------ 401 (858)
Q Consensus 356 ~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~----------~-----~------------------ 401 (858)
||||+ +...+++|+.........++..+.+..|++.++...... . +
T Consensus 327 lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 406 (1108)
T 3l9o_A 327 LSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNST 406 (1108)
T ss_dssp EECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------
T ss_pred EcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhccccccc
Confidence 99999 777888887632222345566666667776655321100 0 0
Q ss_pred ------------------HHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCC-----------------
Q psy2470 402 ------------------VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQRE----------------- 446 (858)
Q Consensus 402 ------------------~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~----------------- 446 (858)
....+..++..+.....+++|||++++++|+.++..|........
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l 486 (1108)
T 3l9o_A 407 DSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALL 486 (1108)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHH
T ss_pred ccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc
Confidence 022233344555556678999999999999999999863200000
Q ss_pred ------Cc---------ceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCC
Q psy2470 447 ------DL---------KLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPN 511 (858)
Q Consensus 447 ------~~---------~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~ 511 (858)
.+ ...+.++||+|++.+|..+++.|++|.++|||||+++++|||||++++||+++. .||..
T Consensus 487 ~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~----~~d~~ 562 (1108)
T 3l9o_A 487 PETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR----KWDGQ 562 (1108)
T ss_dssp HHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSE----EESSS
T ss_pred chhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCc----ccCcc
Confidence 00 011788999999999999999999999999999999999999999999999542 24422
Q ss_pred CCCCcceeeecCHhhHHHhhcccCCCC---CceEEEeh
Q psy2470 512 TLTNSLVVVPISKASAVQRAGRAGRVR---SGHVYRKN 546 (858)
Q Consensus 512 ~g~~~l~~~pis~~~~~qR~GRaGR~g---~G~~~rL~ 546 (858)
. ..|+|..+|+||+|||||.| .|.||.++
T Consensus 563 ~------~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~ 594 (1108)
T 3l9o_A 563 Q------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMI 594 (1108)
T ss_dssp C------EEECCHHHHHHHHHHSCCSSSCSSEEEEEEE
T ss_pred c------cccCCHHHHHHhhcccCCCCCCCceEEEEEe
Confidence 1 26899999999999999999 59999999
No 15
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=3.1e-31 Score=299.22 Aligned_cols=280 Identities=13% Similarity=0.134 Sum_probs=195.5
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+... .. +....++|+++||++++.|+++++.+ ++...+.. ++...
T Consensus 63 i~a~TGsGKT-----~~~~~~~~~~~----~~-----~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~---~~~~~ 124 (400)
T 1s2m_A 63 ARAKNGTGKT-----AAFVIPTLEKV----KP-----KLNKIQALIMVPTRELALQTSQVVRT-LGKHCGIS---CMVTT 124 (400)
T ss_dssp EECCTTSCHH-----HHHHHHHHHHC----CT-----TSCSCCEEEECSSHHHHHHHHHHHHH-HTTTTTCC---EEEEC
T ss_pred EECCCCcHHH-----HHHHHHHHHHH----hh-----ccCCccEEEEcCCHHHHHHHHHHHHH-HhcccCce---EEEEe
Confidence 4699999999 44444433211 10 01223589999999999999887754 33344444 33322
Q ss_pred eccce------eecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCc
Q psy2470 286 RKGRM------KILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQL 351 (858)
Q Consensus 286 r~~~~------~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~ 351 (858)
+.... ....++|+|+|||+|++ +.. ...+.++.++ ++++ .++...+ +.+. ...++..
T Consensus 125 g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~----~~~~~~~-~~i~----~~~~~~~ 195 (400)
T 1s2m_A 125 GGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLS----RDFKTII-EQIL----SFLPPTH 195 (400)
T ss_dssp SSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSS----HHHHHHH-HHHH----TTSCSSC
T ss_pred CCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhh----hchHHHH-HHHH----HhCCcCc
Confidence 22211 12457999999999988 332 2346666665 5666 4433222 2222 2456788
Q ss_pred eEEEEecccCHH--H-HHHHhhcccCCCCcEEEecCe--ecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcC
Q psy2470 352 KLIISSATVDAE--E-ICQFYNISASSNATILSVKGH--LYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVI 426 (858)
Q Consensus 352 q~il~SAT~~~~--~-~~~~~~~~~~~~~~~i~v~g~--~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~ 426 (858)
|+++||||++.. . +..++. ++..+.+... ...+..++......+ +...+..++.....+++|||++
T Consensus 196 ~~i~lSAT~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~----k~~~l~~~~~~~~~~~~lVf~~ 266 (400)
T 1s2m_A 196 QSLLFSATFPLTVKEFMVKHLH-----KPYEINLMEELTLKGITQYYAFVEERQ----KLHCLNTLFSKLQINQAIIFCN 266 (400)
T ss_dssp EEEEEESCCCHHHHHHHHHHCS-----SCEEESCCSSCBCTTEEEEEEECCGGG----HHHHHHHHHHHSCCSEEEEECS
T ss_pred eEEEEEecCCHHHHHHHHHHcC-----CCeEEEeccccccCCceeEEEEechhh----HHHHHHHHHhhcCCCcEEEEEe
Confidence 999999999532 2 233333 2333322221 123444544433322 3344555555566789999999
Q ss_pred CHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccce
Q psy2470 427 GLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKAR 506 (858)
Q Consensus 427 t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~ 506 (858)
++++++.+++.|++. ++.+..+||++++++|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 267 ~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~------- 332 (400)
T 1s2m_A 267 STNRVELLAKKITDL-------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN------- 332 (400)
T ss_dssp SHHHHHHHHHHHHHH-------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE-------
T ss_pred cHHHHHHHHHHHHhc-------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEE-------
Confidence 999999999999987 788999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 507 WFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 507 ~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+ .|.|..+|.||+|||||.|. |.||.++
T Consensus 333 -~~----------~p~s~~~~~Qr~GR~gR~g~~g~~~~l~ 362 (400)
T 1s2m_A 333 -FD----------FPKTAETYLHRIGRSGRFGHLGLAINLI 362 (400)
T ss_dssp -SS----------CCSSHHHHHHHHCBSSCTTCCEEEEEEE
T ss_pred -eC----------CCCCHHHHHHhcchhcCCCCCceEEEEe
Confidence 66 57889999999999999986 9999999
No 16
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.97 E-value=2.2e-32 Score=314.67 Aligned_cols=273 Identities=14% Similarity=0.070 Sum_probs=195.0
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+..... ...++||++|||++|.|+++++. |.. ++|..
T Consensus 24 v~a~TGsGKT-----~~~~~~~l~~~~~-----------~~~~~lvl~Ptr~La~Q~~~~l~-------g~~---v~~~~ 77 (451)
T 2jlq_A 24 MDLHPGAGKT-----KRILPSIVREALL-----------RRLRTLILAPTRVVAAEMEEALR-------GLP---IRYQT 77 (451)
T ss_dssp ECCCTTSSCC-----TTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHTT-------TSC---EEECC
T ss_pred EECCCCCCHh-----hHHHHHHHHHHHh-----------cCCcEEEECCCHHHHHHHHHHhc-------Cce---eeeee
Confidence 3699999999 5555554332111 11358999999999999988762 333 66655
Q ss_pred eccc-eeecceeEEEeecCcccc-CCCccCCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEec
Q psy2470 286 RKGR-MKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSA 358 (858)
Q Consensus 286 r~~~-~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SA 358 (858)
+... ....++.|.++|+|++.+ +..+..+.++++| ..++ ...+..++++... ..+++.|+++|||
T Consensus 78 ~~~~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~--~~~~~~~~~~~~~------~~~~~~~~i~~SA 149 (451)
T 2jlq_A 78 PAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTD--PCSVAARGYISTR------VEMGEAAAIFMTA 149 (451)
T ss_dssp TTCSCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCS--HHHHHHHHHHHHH------HHTTSCEEEEECS
T ss_pred ccccccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCC--cchHHHHHHHHHh------hcCCCceEEEEcc
Confidence 5443 233457899999999998 7777778888777 2113 0123334444322 2346799999999
Q ss_pred ccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHH
Q psy2470 359 TVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGIL 438 (858)
Q Consensus 359 T~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L 438 (858)
|++.+....++. +++++.++ +..|... |. . . ...+.. ..+++|||++++++++.+++.|
T Consensus 150 T~~~~~~~~~~~-----~~~~~~~~-~~~p~~~-~~-----~----~----~~~l~~-~~~~~lVF~~s~~~a~~l~~~L 208 (451)
T 2jlq_A 150 TPPGSTDPFPQS-----NSPIEDIE-REIPERS-WN-----T----G----FDWITD-YQGKTVWFVPSIKAGNDIANCL 208 (451)
T ss_dssp SCTTCCCSSCCC-----SSCEEEEE-CCCCSSC-CS-----S----S----CHHHHH-CCSCEEEECSSHHHHHHHHHHH
T ss_pred CCCccchhhhcC-----CCceEecC-ccCCchh-hH-----H----H----HHHHHh-CCCCEEEEcCCHHHHHHHHHHH
Confidence 995432222222 45555443 2222111 10 0 0 111122 3679999999999999999999
Q ss_pred HHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcce
Q psy2470 439 KQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLV 518 (858)
Q Consensus 439 ~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~ 518 (858)
++. ++.+..+||++. .++++.|++|+.+||||||++|+|||||+ ++|||+|+.+.+.|| ..+.+.+.
T Consensus 209 ~~~-------g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~ 275 (451)
T 2jlq_A 209 RKS-------GKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVI 275 (451)
T ss_dssp HTT-------TCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEE
T ss_pred HHc-------CCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccceee
Confidence 876 788999999754 57899999999999999999999999999 999999999999998 56777777
Q ss_pred e---eecCHhhHHHhhcccCCCC--CceEEEeh
Q psy2470 519 V---VPISKASAVQRAGRAGRVR--SGHVYRKN 546 (858)
Q Consensus 519 ~---~pis~~~~~qR~GRaGR~g--~G~~~rL~ 546 (858)
. .|.|.++|.||+|||||.| +|.||.++
T Consensus 276 ~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~ 308 (451)
T 2jlq_A 276 LAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFS 308 (451)
T ss_dssp EEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ecccccCCHHHHHHhccccCCCCCCCccEEEEe
Confidence 6 9999999999999999999 58998876
No 17
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.97 E-value=1.2e-31 Score=317.01 Aligned_cols=301 Identities=13% Similarity=0.106 Sum_probs=196.8
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++++|.+...... ... +.....+||++|||+||.|+++++.+..+...+.....+....
T Consensus 116 v~apTGsGKT-----l~~~lpil~~l~~~--~~~---~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~ 185 (563)
T 3i5x_A 116 ARAKTGTGKT-----FAFLIPIFQHLINT--KFD---SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLV 185 (563)
T ss_dssp EECCTTSCHH-----HHHHHHHHHHHHHT--TTS---STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEEC
T ss_pred EECCCCCCcc-----HHHHHHHHHHHHhc--ccc---ccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEE
Confidence 4699999999 66666654432221 101 1223468999999999999998886643211111000011111
Q ss_pred eccc-------eeecceeEEEeecCcccc-CCC--ccCCCcccEE------EecCCCCCchhhhhHHHHHH--HHhcccC
Q psy2470 286 RKGR-------MKILVSKIFKMSQGKPSD-SGV--EPISQSYLVE------LSILAPGGQDVIGEDMKAFA--EQLKPLK 347 (858)
Q Consensus 286 r~~~-------~~~~~t~I~v~TpGrLl~-~~~--~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~--~~l~~~~ 347 (858)
+... .....++|+|+|||+|++ +.. ...++.+.+| ++++ .+|...+...+. .......
T Consensus 186 g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~----~~f~~~~~~i~~~l~~~~~~~ 261 (563)
T 3i5x_A 186 GGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLE----IGFRDDLETISGILNEKNSKS 261 (563)
T ss_dssp TTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTS----TTTHHHHHHHHHHHHHHCSSC
T ss_pred CCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhc----cchHHHHHHHHHhhhhccccC
Confidence 1111 112357999999999998 433 2245556555 6776 444332222211 0111223
Q ss_pred CCCceEEEEecccC--HHHHHHHhhcccCCCCcEEEecCe-------ecceeEEEecC-CccchHHHHHHHHHHHHhh-C
Q psy2470 348 RTQLKLIISSATVD--AEEICQFYNISASSNATILSVKGH-------LYPVSVYYSND-PVVNYVQGVVDTAIKIHES-M 416 (858)
Q Consensus 348 ~~~~q~il~SAT~~--~~~~~~~~~~~~~~~~~~i~v~g~-------~~~v~~~~~~~-~~~~~~~~~~~~l~~i~~~-~ 416 (858)
.++.|+++||||++ +..+...+.. ++..+.+... ...+...+... ...+........+...+.. .
T Consensus 262 ~~~~~~l~~SAT~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 337 (563)
T 3i5x_A 262 ADNIKTLLFSATLDDKVQKLANNIMN----KKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERD 337 (563)
T ss_dssp TTCCEEEEEESSCCTHHHHHTTTTCC----SSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTT
T ss_pred ccCceEEEEEccCCHHHHHHHHHhcC----CCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcC
Confidence 45789999999994 4555555442 3333333211 11222222221 1122222333444443333 5
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeE
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVY 496 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~ 496 (858)
+.+++|||+++++.++.+++.|++... .++.+..+||+|++++|.++++.|++|+.+|||||+++++|||+|+|++
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~----~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~ 413 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK----KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHE 413 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT----TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCE
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCE
Confidence 578999999999999999999986421 2788999999999999999999999999999999999999999999999
Q ss_pred EEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 497 VIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 497 VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
||+ || .|.+.++|+||+|||||.|. |.|+.++
T Consensus 414 VI~--------~~----------~p~s~~~y~Qr~GRagR~g~~g~~i~~~ 446 (563)
T 3i5x_A 414 VLQ--------IG----------VPSELANYIHRIGRTARSGKEGSSVLFI 446 (563)
T ss_dssp EEE--------ES----------CCSSTTHHHHHHTTSSCTTCCEEEEEEE
T ss_pred EEE--------EC----------CCCchhhhhhhcCccccCCCCceEEEEE
Confidence 999 66 67788999999999999986 9999998
No 18
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.97 E-value=3.7e-32 Score=322.66 Aligned_cols=297 Identities=13% Similarity=0.104 Sum_probs=196.6
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHh----CCcCccEeeee
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEM----GCRMDFEYISR 281 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~----g~~~g~~~~~v 281 (858)
+.|+|||||| .+|++|.+.....- ... +.....+||++|||+||.|+++++.+.. +......
T Consensus 65 v~apTGsGKT-----l~~~lpil~~l~~~--~~~---~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~---- 130 (579)
T 3sqw_A 65 ARAKTGTGKT-----FAFLIPIFQHLINT--KFD---SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYAC---- 130 (579)
T ss_dssp EECCTTSCHH-----HHHHHHHHHHHHHT--TTS---STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCE----
T ss_pred EEcCCCcHHH-----HHHHHHHHHHHHhc--ccc---ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEE----
Confidence 4599999999 66666654432211 111 1223468999999999999998886643 2221111
Q ss_pred eEEEeccce-------eecceeEEEeecCcccc-CCC--ccCCCcccEE------EecCCCCCchhhhhHHHHHH--HHh
Q psy2470 282 GYMFRKGRM-------KILVSKIFKMSQGKPSD-SGV--EPISQSYLVE------LSILAPGGQDVIGEDMKAFA--EQL 343 (858)
Q Consensus 282 G~~vr~~~~-------~~~~t~I~v~TpGrLl~-~~~--~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~--~~l 343 (858)
......... ....++|+|+|||+|++ +.. ...+..+.+| ++++ .+|...+...+. ...
T Consensus 131 ~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~----~gf~~~~~~i~~~l~~~ 206 (579)
T 3sqw_A 131 VSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLE----IGFRDDLETISGILNEK 206 (579)
T ss_dssp EEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTS----TTTHHHHHHHHHHHHHH
T ss_pred EEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhc----CCCHHHHHHHHHHhhhh
Confidence 111111111 12358999999999998 433 2345555554 6777 444333222221 011
Q ss_pred cccCCCCceEEEEecccC--HHHHHHHhhcccCCCCcEEEecCe-------ecceeEEEecCC-ccchHHHHHHHHHHHH
Q psy2470 344 KPLKRTQLKLIISSATVD--AEEICQFYNISASSNATILSVKGH-------LYPVSVYYSNDP-VVNYVQGVVDTAIKIH 413 (858)
Q Consensus 344 ~~~~~~~~q~il~SAT~~--~~~~~~~~~~~~~~~~~~i~v~g~-------~~~v~~~~~~~~-~~~~~~~~~~~l~~i~ 413 (858)
.....++.|+++||||++ +..+...+.. ++..+.+... ...+...+.... ........+..+....
T Consensus 207 ~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 282 (579)
T 3sqw_A 207 NSKSADNIKTLLFSATLDDKVQKLANNIMN----KKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQI 282 (579)
T ss_dssp CSSCTTCCEEEEEESSCCTHHHHHTTTTCC----SSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHH
T ss_pred hcccccCceEEEEeccCChHHHHHHHHHcC----CCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHH
Confidence 122345789999999994 3455554442 3333333211 112333222211 1222223334444433
Q ss_pred hh-CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCC
Q psy2470 414 ES-MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIP 492 (858)
Q Consensus 414 ~~-~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp 492 (858)
.. .+.+++|||++|++.++.+++.|++... .++.+..+||+|++++|.++++.|++|+.+|||||+++++|||+|
T Consensus 283 ~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~----~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip 358 (579)
T 3sqw_A 283 KERDSNYKAIIFAPTVKFTSFLCSILKNEFK----KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFP 358 (579)
T ss_dssp HHTTTCCEEEEECSSHHHHHHHHHHHHHHHT----TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCT
T ss_pred hhcCCCCcEEEECCcHHHHHHHHHHHHHhhc----CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcc
Confidence 33 4567999999999999999999986421 277899999999999999999999999999999999999999999
Q ss_pred CeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 493 GIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 493 ~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+|++||+ |+ .|.+.++|+||+|||||.|. |.|+.++
T Consensus 359 ~v~~VI~--------~~----------~p~s~~~y~Qr~GRagR~g~~g~~i~~~ 395 (579)
T 3sqw_A 359 NVHEVLQ--------IG----------VPSELANYIHRIGRTARSGKEGSSVLFI 395 (579)
T ss_dssp TCCEEEE--------ES----------CCSSTTHHHHHHTTSSCTTCCEEEEEEE
T ss_pred cCCEEEE--------cC----------CCCCHHHhhhhccccccCCCCceEEEEE
Confidence 9999999 66 67788999999999999996 9999999
No 19
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=2.5e-31 Score=298.66 Aligned_cols=283 Identities=13% Similarity=0.171 Sum_probs=196.2
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+||||||+++ .+|.+.. +.. ......+||++||++++.|+++++.+.....-+.. ++...
T Consensus 50 v~a~TGsGKT~~~-----~~~~~~~----l~~-----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~---~~~~~ 112 (391)
T 1xti_A 50 CQAKSGMGKTAVF-----VLATLQQ----LEP-----VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVK---VAVFF 112 (391)
T ss_dssp EECSSCSSHHHHH-----HHHHHHH----CCC-----CTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCC---EEEEC
T ss_pred EECCCCCcHHHHH-----HHHHHHh----hcc-----cCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeE---EEEEe
Confidence 4699999999444 3332221 111 01223589999999999999888765543221333 33322
Q ss_pred ecccee-------ecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCC
Q psy2470 286 RKGRMK-------ILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 286 r~~~~~-------~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~ 350 (858)
+..... ...++|+|+|||+|++ +.. ...+.++.++ ++.+ ..++...+.+.+. ..+++
T Consensus 113 g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~---~~~~~~~~~~~~~-----~~~~~ 184 (391)
T 1xti_A 113 GGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE---QLDMRRDVQEIFR-----MTPHE 184 (391)
T ss_dssp TTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTS---SHHHHHHHHHHHH-----TSCSS
T ss_pred CCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhh---ccchHHHHHHHHh-----hCCCC
Confidence 222111 1236999999999998 332 2345666655 4433 0133333333322 45668
Q ss_pred ceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCee----cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEE
Q psy2470 351 LKLIISSATV--DAEEICQFYNISASSNATILSVKGHL----YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAF 424 (858)
Q Consensus 351 ~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~----~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF 424 (858)
.|+++||||+ +...+...+.. ++..+.+.... ..+..++......+ +...+..++.....+++|||
T Consensus 185 ~~~i~~SAT~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~~~~lvf 256 (391)
T 1xti_A 185 KQVMMFSATLSKEIRPVCRKFMQ----DPMEIFVDDETKLTLHGLQQYYVKLKDNE----KNRKLFDLLDVLEFNQVVIF 256 (391)
T ss_dssp SEEEEEESSCCSTHHHHHHHHCS----SCEEEECCCCCCCCCTTCEEEEEECCGGG----HHHHHHHHHHHSCCSEEEEE
T ss_pred ceEEEEEeeCCHHHHHHHHHHcC----CCeEEEecCccccCcccceEEEEEcCchh----HHHHHHHHHHhcCCCcEEEE
Confidence 9999999999 34444443332 34444443321 23444554433332 33445555555667899999
Q ss_pred cCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCcc
Q psy2470 425 VIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVK 504 (858)
Q Consensus 425 l~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k 504 (858)
+++.++++.+++.|++. ++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 257 ~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~----- 324 (391)
T 1xti_A 257 VKSVQRCIALAQLLVEQ-------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----- 324 (391)
T ss_dssp CSCHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEE-----
T ss_pred eCcHHHHHHHHHHHHhC-------CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEE-----
Confidence 99999999999999977 788999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 505 ARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 505 ~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+ .|.|..+|.||+||+||.|. |.|+.++
T Consensus 325 ---~~----------~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 354 (391)
T 1xti_A 325 ---YD----------MPEDSDTYLHRVARAGRFGTKGLAITFV 354 (391)
T ss_dssp ---SS----------CCSSHHHHHHHHCBCSSSCCCCEEEEEE
T ss_pred ---eC----------CCCCHHHHHHhcccccCCCCceEEEEEE
Confidence 65 57789999999999999986 9999999
No 20
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=8.2e-31 Score=291.18 Aligned_cols=277 Identities=14% Similarity=0.161 Sum_probs=196.5
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+||||||++++ +|.+.. +. . .....+|+++|+++++.|+++++.+..+. .+.. ++...
T Consensus 49 ~~~~TGsGKT~~~~-----~~~~~~----~~---~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~---v~~~~ 109 (367)
T 1hv8_A 49 AQARTGSGKTASFA-----IPLIEL----VN---E---NNGIEAIILTPTRELAIQVADEIESLKGN-KNLK---IAKIY 109 (367)
T ss_dssp EECCSSSSHHHHHH-----HHHHHH----SC---S---SSSCCEEEECSCHHHHHHHHHHHHHHHCS-SCCC---EEEEC
T ss_pred EECCCCChHHHHHH-----HHHHHH----hc---c---cCCCcEEEEcCCHHHHHHHHHHHHHHhCC-CCce---EEEEE
Confidence 35999999994433 332221 11 0 12235899999999999999988766543 2222 22222
Q ss_pred eccce-----eecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCce
Q psy2470 286 RKGRM-----KILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLK 352 (858)
Q Consensus 286 r~~~~-----~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q 352 (858)
+.... ....++|+|+||++|++ +.. ...+.++.++ ++.+ .++...+.+.+. ..+++.|
T Consensus 110 ~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~----~~~~~~~~~~~~-----~~~~~~~ 180 (367)
T 1hv8_A 110 GGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLN----MGFIKDVEKILN-----ACNKDKR 180 (367)
T ss_dssp TTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHT----TTTHHHHHHHHH-----TSCSSCE
T ss_pred CCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhh----hchHHHHHHHHH-----hCCCCce
Confidence 22111 11357999999999998 333 3346666665 5555 444444444433 5567899
Q ss_pred EEEEecccCHH--H-HHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHH
Q psy2470 353 LIISSATVDAE--E-ICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLE 429 (858)
Q Consensus 353 ~il~SAT~~~~--~-~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~ 429 (858)
+++||||++.+ . +..++. +...+... ....++..+......+. ...+..++. ...+++|||+++.+
T Consensus 181 ~i~~SAT~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~l~~~l~-~~~~~~lvf~~~~~ 249 (367)
T 1hv8_A 181 ILLFSATMPREILNLAKKYMG-----DYSFIKAK-INANIEQSYVEVNENER----FEALCRLLK-NKEFYGLVFCKTKR 249 (367)
T ss_dssp EEEECSSCCHHHHHHHHHHCC-----SEEEEECC-SSSSSEEEEEECCGGGH----HHHHHHHHC-STTCCEEEECSSHH
T ss_pred EEEEeeccCHHHHHHHHHHcC-----CCeEEEec-CCCCceEEEEEeChHHH----HHHHHHHHh-cCCCcEEEEECCHH
Confidence 99999999543 2 334444 33333332 22355555554443333 334444444 45678999999999
Q ss_pred HHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceecc
Q psy2470 430 QIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFN 509 (858)
Q Consensus 430 ~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd 509 (858)
+++.+++.|++. ++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+ |+
T Consensus 250 ~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~--------~~ 314 (367)
T 1hv8_A 250 DTKELASMLRDI-------GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVIN--------YH 314 (367)
T ss_dssp HHHHHHHHHHHT-------TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE--------SS
T ss_pred HHHHHHHHHHhc-------CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEE--------ec
Confidence 999999999977 788999999999999999999999999999999999999999999999999 55
Q ss_pred CCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 510 PNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 510 ~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
.|.|..+|.||+||+||.|. |.|+.++
T Consensus 315 ----------~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 342 (367)
T 1hv8_A 315 ----------LPQNPESYMHRIGRTGRAGKKGKAISII 342 (367)
T ss_dssp ----------CCSCHHHHHHHSTTTCCSSSCCEEEEEE
T ss_pred ----------CCCCHHHhhhcccccccCCCccEEEEEE
Confidence 57889999999999999985 9999999
No 21
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.97 E-value=3.2e-31 Score=305.52 Aligned_cols=271 Identities=17% Similarity=0.106 Sum_probs=185.6
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .+|.+|.+..... ....+||++|||+||.|+++++. | .. +++..
T Consensus 26 v~a~TGsGKT-----~~~~l~il~~~~~-----------~~~~~lvl~Ptr~La~Q~~~~l~---g----~~---v~~~~ 79 (459)
T 2z83_A 26 LDLHPGSGKT-----RKILPQIIKDAIQ-----------QRLRTAVLAPTRVVAAEMAEALR---G----LP---VRYQT 79 (459)
T ss_dssp ECCCTTSCTT-----TTHHHHHHHHHHH-----------TTCCEEEEECSHHHHHHHHHHTT---T----SC---EEECC
T ss_pred EECCCCCCHH-----HHHHHHHHHHHHh-----------CCCcEEEECchHHHHHHHHHHhc---C----ce---EeEEe
Confidence 4699999999 5555554432111 11358999999999999988774 2 22 44433
Q ss_pred eccce-eecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 286 RKGRM-KILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 286 r~~~~-~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
+.... .++...+.++|.|.+.+ +..++.++++.+| +... .++.+++++... .+++.|+++|
T Consensus 80 ~~~~~~~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~----~~~~~~~~~~~~------~~~~~~~il~ 149 (459)
T 2z83_A 80 SAVQREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPA----SIAARGYIATKV------ELGEAAAIFM 149 (459)
T ss_dssp --------CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHH----HHHHHHHHHHHH------HTTSCEEEEE
T ss_pred cccccCCCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCch----hhHHHHHHHHHh------ccCCccEEEE
Confidence 32221 22345677888888887 6667778887777 3222 355577776654 2367999999
Q ss_pred ecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHH
Q psy2470 357 SATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIG 436 (858)
Q Consensus 357 SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~ 436 (858)
|||++.+. ..+.. .+.|+..+... .| ...+. .... .+.. ..+++|||++++++++.+++
T Consensus 150 SAT~~~~~-~~~~~----~~~pi~~~~~~-~~---------~~~~~-~~~~----~l~~-~~~~~LVF~~s~~~~~~l~~ 208 (459)
T 2z83_A 150 TATPPGTT-DPFPD----SNAPIHDLQDE-IP---------DRAWS-SGYE----WITE-YAGKTVWFVASVKMGNEIAM 208 (459)
T ss_dssp CSSCTTCC-CSSCC----CSSCEEEEECC-CC---------SSCCS-SCCH----HHHH-CCSCEEEECSCHHHHHHHHH
T ss_pred EcCCCcch-hhhcc----CCCCeEEeccc-CC---------cchhH-HHHH----HHHh-cCCCEEEEeCChHHHHHHHH
Confidence 99995321 11111 13444433211 11 11110 0011 1122 26899999999999999999
Q ss_pred HHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCc
Q psy2470 437 ILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNS 516 (858)
Q Consensus 437 ~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~ 516 (858)
.|++. ++.+..+||+ +|.++++.|++|+.+||||||++|+|||||+ ++|||+|..+.+.|+ ..+.+.
T Consensus 209 ~L~~~-------g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~-~~~~~~ 275 (459)
T 2z83_A 209 CLQRA-------GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTIL-EEGEGR 275 (459)
T ss_dssp HHHHT-------TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEE-CSSSCE
T ss_pred HHHhc-------CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccc-cccccc
Confidence 99987 8889999984 7889999999999999999999999999999 999999988888765 234455
Q ss_pred cee---eecCHhhHHHhhcccCCCC--CceEEEeh
Q psy2470 517 LVV---VPISKASAVQRAGRAGRVR--SGHVYRKN 546 (858)
Q Consensus 517 l~~---~pis~~~~~qR~GRaGR~g--~G~~~rL~ 546 (858)
+.. .|.|.++|.||+|||||.| +|.||.++
T Consensus 276 ~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~ 310 (459)
T 2z83_A 276 VILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYG 310 (459)
T ss_dssp EEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred cccccCCCCCHHHHHHhccccCCCCCCCCeEEEEE
Confidence 544 8999999999999999998 69999988
No 22
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.96 E-value=1.5e-31 Score=300.57 Aligned_cols=281 Identities=16% Similarity=0.208 Sum_probs=85.5
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+.. +... ....++|+++||++++.|+++++.+. ....+.. ++...
T Consensus 63 v~~~TGsGKT-----~~~~~~~~~~----l~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~-~~~~~~~---~~~~~ 124 (394)
T 1fuu_A 63 AQAQSGTGKT-----GTFSIAALQR----IDTS-----VKAPQALMLAPTRELALQIQKVVMAL-AFHMDIK---VHACI 124 (394)
T ss_dssp ECCCSSHHHH-----HHHHHHHHHH----CCTT-----CCSCCEEEECSSHHHHHHHHHHHHHH-TTTSCCC---EEEEC
T ss_pred EECCCCChHH-----HHHHHHHHHH----hhcc-----CCCCCEEEEcCCHHHHHHHHHHHHHH-hccCCee---EEEEe
Confidence 4699999999 4444443321 1111 12346899999999999998887543 3233333 33222
Q ss_pred eccce-----eecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCce
Q psy2470 286 RKGRM-----KILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLK 352 (858)
Q Consensus 286 r~~~~-----~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q 352 (858)
+.... ....++|+|+|||+|++ +.. ...+.++.++ ++.+ .++...+.+.+. ..++..|
T Consensus 125 g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~----~~~~~~~~~~~~-----~~~~~~~ 195 (394)
T 1fuu_A 125 GGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLS----SGFKEQIYQIFT-----LLPPTTQ 195 (394)
T ss_dssp SSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHH----TTCHHHHHHHHH-----HSCTTCE
T ss_pred CCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhC----CCcHHHHHHHHH-----hCCCCce
Confidence 22111 11257899999999998 432 3345566655 5555 444444444333 5567899
Q ss_pred EEEEecccCH--HHHH-HHhhcccCCCCcEEEecCeec---ceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcC
Q psy2470 353 LIISSATVDA--EEIC-QFYNISASSNATILSVKGHLY---PVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVI 426 (858)
Q Consensus 353 ~il~SAT~~~--~~~~-~~~~~~~~~~~~~i~v~g~~~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~ 426 (858)
+++||||++. ..+. .++. ++..+.+..... .+..++......+ .+...+..+......+++|||++
T Consensus 196 ~i~~SAT~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~lVf~~ 267 (394)
T 1fuu_A 196 VVLLSATMPNDVLEVTTKFMR-----NPVRILVKKDELTLEGIKQFYVNVEEEE---YKYECLTDLYDSISVTQAVIFCN 267 (394)
T ss_dssp EEEECSSCCHHHHHHHHHHCC-----SCEEEEECC---------------------------------------------
T ss_pred EEEEEEecCHHHHHHHHHhcC-----CCeEEEecCccccCCCceEEEEEcCchh---hHHHHHHHHHhcCCCCcEEEEEC
Confidence 9999999953 2333 4444 344444433222 1222222222111 12334444554555689999999
Q ss_pred CHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccce
Q psy2470 427 GLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKAR 506 (858)
Q Consensus 427 t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~ 506 (858)
++++++.+++.|++. ++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 268 ~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~------- 333 (394)
T 1fuu_A 268 TRRKVEELTTKLRND-------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN------- 333 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHc-------CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEE-------
Confidence 999999999999876 888999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 507 WFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 507 ~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+ .|.|..+|.||+||+||.|. |.|+.++
T Consensus 334 -~~----------~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 363 (394)
T 1fuu_A 334 -YD----------LPANKENYIHRIGRGGRFGRKGVAINFV 363 (394)
T ss_dssp -----------------------------------------
T ss_pred -eC----------CCCCHHHHHHHcCcccCCCCCceEEEEE
Confidence 55 57788999999999999986 9999999
No 23
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.96 E-value=8.2e-31 Score=311.29 Aligned_cols=271 Identities=15% Similarity=0.092 Sum_probs=189.1
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .+|.+|.+..... ...++||++|||+||.|+++++. |.. ++|..
T Consensus 191 v~a~TGSGKT-----~~~~lpil~~l~~-----------~~~~vLvl~PtreLa~Qi~~~l~-------~~~---v~~~~ 244 (618)
T 2whx_A 191 MDLHPGAGKT-----KRILPSIVREALK-----------RRLRTLILAPTRVVAAEMEEALR-------GLP---IRYQT 244 (618)
T ss_dssp ECCCTTSSTT-----TTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHTT-------TSC---EEECC
T ss_pred EEcCCCCCHH-----HHHHHHHHHHHHh-----------CCCeEEEEcChHHHHHHHHHHhc-------CCc---eeEec
Confidence 4699999999 6665664432211 11358999999999999987663 333 66655
Q ss_pred ec-cceeecceeEEEeecCcccc-CCCccCCCcccEE------EecCCCCCchhh--hhHHHHHHHHhcccCCCCceEEE
Q psy2470 286 RK-GRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE------LSILAPGGQDVI--GEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 286 r~-~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl------R~l~~~~~~d~l--l~~lk~~~~~l~~~~~~~~q~il 355 (858)
+. +.....+..+.++|.|.+.+ +..++.++++++| ++ + .++. ++.+.... .+++.|+++
T Consensus 245 ~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~----~~~~~~~~~i~~~l------~~~~~q~il 313 (618)
T 2whx_A 245 PAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-D----PCSVAARGYISTRV------EMGEAAAIF 313 (618)
T ss_dssp TTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-S----HHHHHHHHHHHHHH------HHTSCEEEE
T ss_pred ccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-C----ccHHHHHHHHHHHh------cccCccEEE
Confidence 43 22333455677777777776 5566678888777 33 5 3333 22222211 136799999
Q ss_pred EecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHH
Q psy2470 356 SSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHII 435 (858)
Q Consensus 356 ~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~ 435 (858)
||||++.. ...++. .+++.+.++.. +|. ..... +...+.. ..+++|||++|+++++.++
T Consensus 314 ~SAT~~~~-~~~~~~----~~~~~~~v~~~-~~~------~~~~~--------ll~~l~~-~~~~~LVF~~s~~~a~~l~ 372 (618)
T 2whx_A 314 MTATPPGS-TDPFPQ----SNSPIEDIERE-IPE------RSWNT--------GFDWITD-YQGKTVWFVPSIKAGNDIA 372 (618)
T ss_dssp ECSSCTTC-CCSSCC----CSSCEEEEECC-CCS------SCCSS--------SCHHHHH-CCSCEEEECSSHHHHHHHH
T ss_pred EECCCchh-hhhhhc----cCCceeeeccc-CCH------HHHHH--------HHHHHHh-CCCCEEEEECChhHHHHHH
Confidence 99999432 111222 13455544432 111 11111 1112222 2679999999999999999
Q ss_pred HHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceec--cCCCC
Q psy2470 436 GILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWF--NPNTL 513 (858)
Q Consensus 436 ~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~y--d~~~g 513 (858)
+.|++. ++.+..+||+ +|.++++.|++|+.+||||||+|||||||| |++|||+|+++.+.+ +...+
T Consensus 373 ~~L~~~-------g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~ 440 (618)
T 2whx_A 373 NCLRKS-------GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPER 440 (618)
T ss_dssp HHHHHT-------TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCE
T ss_pred HHHHHc-------CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCc
Confidence 999987 8889999984 788899999999999999999999999997 999999999877665 33334
Q ss_pred CCcceeeecCHhhHHHhhcccCCCC--CceEEEeh
Q psy2470 514 TNSLVVVPISKASAVQRAGRAGRVR--SGHVYRKN 546 (858)
Q Consensus 514 ~~~l~~~pis~~~~~qR~GRaGR~g--~G~~~rL~ 546 (858)
+......|.|.++|+||+|||||.| +|.||.++
T Consensus 441 ~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~ 475 (618)
T 2whx_A 441 VILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFS 475 (618)
T ss_dssp EEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred eEEcccccCCHHHHHHhccccCCCCCCCCeEEEEc
Confidence 5556668999999999999999996 69999987
No 24
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.96 E-value=3.3e-30 Score=320.91 Aligned_cols=299 Identities=14% Similarity=0.099 Sum_probs=209.8
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHh-CCcCccEeeeee
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEM-GCRMDFEYISRG 282 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~-g~~~g~~~~~vG 282 (858)
+-+.|+||||||+++..+ ++... . ....++|++||++|+.|+++++.+.+ +..++..
T Consensus 57 vlv~apTGsGKTlv~~~~---i~~~~---------~-----~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l----- 114 (997)
T 4a4z_A 57 VFVAAHTSAGKTVVAEYA---IAMAH---------R-----NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLI----- 114 (997)
T ss_dssp EEEECCTTSCSHHHHHHH---HHHHH---------H-----TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEE-----
T ss_pred EEEEECCCCcHHHHHHHH---HHHHH---------h-----cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEE-----
Confidence 446799999999433222 11111 1 11257999999999999999987655 3333333
Q ss_pred EEEeccceeecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEE
Q psy2470 283 YMFRKGRMKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLI 354 (858)
Q Consensus 283 ~~vr~~~~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~i 354 (858)
.+ +......++|+|+|||+|++ +.. ...+.++.+| ++.+ .++...+.+.+. ..+++.|+|
T Consensus 115 --~G-~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d----~~~g~~~e~ii~-----~l~~~v~iI 182 (997)
T 4a4z_A 115 --TG-DVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVND----QDRGVVWEEVII-----MLPQHVKFI 182 (997)
T ss_dssp --CS-SCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCT----TCTTCCHHHHHH-----HSCTTCEEE
T ss_pred --eC-CCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccc----cchHHHHHHHHH-----hcccCCCEE
Confidence 22 22334568999999999988 433 3356677766 7777 666555655555 567889999
Q ss_pred EEeccc-CHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCc--------cch------------------------
Q psy2470 355 ISSATV-DAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPV--------VNY------------------------ 401 (858)
Q Consensus 355 l~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~--------~~~------------------------ 401 (858)
+||||+ +...|++|+......+..++..+.+..|+++++..... ..+
T Consensus 183 lLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 262 (997)
T 4a4z_A 183 LLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKT 262 (997)
T ss_dssp EEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----------
T ss_pred EEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccc
Confidence 999999 88899999974332244566667777777765432100 000
Q ss_pred ---------------------------------------------------------HHHHHHHHHHHHhhCCCCCEEEE
Q psy2470 402 ---------------------------------------------------------VQGVVDTAIKIHESMPVGDILAF 424 (858)
Q Consensus 402 ---------------------------------------------------------~~~~~~~l~~i~~~~~~g~iLVF 424 (858)
....+..+...+.....+++|||
T Consensus 263 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF 342 (997)
T 4a4z_A 263 DNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVF 342 (997)
T ss_dssp ------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEE
Confidence 00123345566666667899999
Q ss_pred cCCHHHHHHHHHHHHHhccCC--------------------------------CCcceEEEeccCCCCHHHHHHhcCCCC
Q psy2470 425 VIGLEQIEHIIGILKQYHNQR--------------------------------EDLKLLILPMHGSLPNNEQIKVFRPTP 472 (858)
Q Consensus 425 l~t~~~i~~l~~~L~~~~~~~--------------------------------~~~~~~v~~LHg~l~q~~r~~v~~~f~ 472 (858)
++++++|+.+++.|....-.. ......+.++||+|++.+|..+++.|+
T Consensus 343 ~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~ 422 (997)
T 4a4z_A 343 VFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFS 422 (997)
T ss_dssp CSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHH
Confidence 999999999999886420000 000114788999999999999999999
Q ss_pred CCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC---CceEEEeh
Q psy2470 473 RAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR---SGHVYRKN 546 (858)
Q Consensus 473 ~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g---~G~~~rL~ 546 (858)
+|.++|||||+++++|||+|++.+|| ++.++ ||... ..|+|.++|.||+|||||.| .|.||.++
T Consensus 423 ~G~~kVLvAT~~~a~GIDiP~~~VVi-~~~~k---~dg~~------~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 423 KGFIKVLFATETFAMGLNLPTRTVIF-SSIRK---HDGNG------LRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp TTCCSEEEECTHHHHSCCCCCSEEEE-SCSEE---EETTE------EEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred CCCCcEEEEchHhhCCCCCCCceEEE-ecccc---ccCcc------CCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 99999999999999999999966655 44444 55332 27999999999999999988 59999988
No 25
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.96 E-value=3.2e-30 Score=305.20 Aligned_cols=286 Identities=14% Similarity=0.099 Sum_probs=193.3
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
++++|||||| +++++|.+.. . ..+||++|+++|+.|.+.++.+ +|..++.. .|...
T Consensus 64 v~~pTGsGKT-----l~~~lpal~~---------~------g~~lVisP~~~L~~q~~~~l~~-~gi~~~~l---~~~~~ 119 (591)
T 2v1x_A 64 LVMPTGGGKS-----LCYQLPALCS---------D------GFTLVICPLISLMEDQLMVLKQ-LGISATML---NASSS 119 (591)
T ss_dssp EECCTTSCTT-----HHHHHHHHTS---------S------SEEEEECSCHHHHHHHHHHHHH-HTCCEEEC---CSSCC
T ss_pred EEECCCChHH-----HHHHHHHHHc---------C------CcEEEEeCHHHHHHHHHHHHHh-cCCcEEEE---eCCCC
Confidence 4699999999 5555554331 1 1479999999999999888754 56654433 22111
Q ss_pred eccce--------eecceeEEEeecCcccc-------CCCccCCCcccEE------EecCCCCCchhhhhH--HHHHHHH
Q psy2470 286 RKGRM--------KILVSKIFKMSQGKPSD-------SGVEPISQSYLVE------LSILAPGGQDVIGED--MKAFAEQ 342 (858)
Q Consensus 286 r~~~~--------~~~~t~I~v~TpGrLl~-------~~~~~~L~~~~vl------R~l~~~~~~d~ll~~--lk~~~~~ 342 (858)
..+.. .....+|+|+||++|.. +.....+..+.++ ++.+ .|.||...+ +..+.
T Consensus 120 ~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~--~g~dfr~~~~~l~~l~-- 195 (591)
T 2v1x_A 120 KEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQ--WGHDFRPDYKALGILK-- 195 (591)
T ss_dssp HHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGST--TCTTCCGGGGGGGHHH--
T ss_pred HHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccc--cccccHHHHHHHHHHH--
Confidence 11000 12457999999998853 1122234455544 3332 112232221 11222
Q ss_pred hcccCCCCceEEEEecccCHH---HHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhh-CCC
Q psy2470 343 LKPLKRTQLKLIISSATVDAE---EICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHES-MPV 418 (858)
Q Consensus 343 l~~~~~~~~q~il~SAT~~~~---~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~-~~~ 418 (858)
...++.|+++||||++.. .+.+++.. ..+.+...+-. ....+|...............+..++.. ...
T Consensus 196 ---~~~~~~~ii~lSAT~~~~v~~~i~~~l~~----~~~~~~~~~~~-r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~ 267 (591)
T 2v1x_A 196 ---RQFPNASLIGLTATATNHVLTDAQKILCI----EKCFTFTASFN-RPNLYYEVRQKPSNTEDFIEDIVKLINGRYKG 267 (591)
T ss_dssp ---HHCTTSEEEEEESSCCHHHHHHHHHHTTC----CSCEEEECCCC-CTTEEEEEEECCSSHHHHHHHHHHHHTTTTTT
T ss_pred ---HhCCCCcEEEEecCCCHHHHHHHHHHhCC----CCcEEEecCCC-CcccEEEEEeCCCcHHHHHHHHHHHHHHhccC
Confidence 223578999999999653 44556552 22333222211 1122332222222233455556666643 356
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEE
Q psy2470 419 GDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVI 498 (858)
Q Consensus 419 g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VI 498 (858)
+++|||++++++++.+++.|+.. ++.+..+||+|++++|.++++.|++|+.+|||||+++++|||+|+|++||
T Consensus 268 ~~~IVf~~sr~~~e~la~~L~~~-------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI 340 (591)
T 2v1x_A 268 QSGIIYCFSQKDSEQVTVSLQNL-------GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVI 340 (591)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEE
T ss_pred CCeEEEeCcHHHHHHHHHHHHHC-------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEE
Confidence 78999999999999999999987 88999999999999999999999999999999999999999999999999
Q ss_pred cCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh--hhHhhh
Q psy2470 499 DPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN--FMYNRL 552 (858)
Q Consensus 499 d~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~--~~~~~l 552 (858)
+ |+ .|-|.++|.||+|||||.|. |.|+.+| .+...+
T Consensus 341 ~--------~~----------~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~ 379 (591)
T 2v1x_A 341 H--------HS----------MSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRI 379 (591)
T ss_dssp E--------SS----------CCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHH
T ss_pred E--------eC----------CCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHH
Confidence 9 66 67789999999999999986 9999999 444443
No 26
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.96 E-value=5.3e-30 Score=305.54 Aligned_cols=262 Identities=16% Similarity=0.142 Sum_probs=178.9
Q ss_pred EEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccceeecceeEEEeecCcccc-CCCc----cCCCcccEE---
Q psy2470 249 TIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-SGVE----PISQSYLVE--- 320 (858)
Q Consensus 249 ~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~-~~~~----~~L~~~~vl--- 320 (858)
.++++|||+||.|+++++. ++|.+++.. +| +..++++||||+.+ +... .....++++
T Consensus 182 gl~l~PtR~LA~Qi~~~l~-~~g~~v~ll---tG-----------~~~~iv~TpGr~~~il~~T~e~~~l~~~v~lvVID 246 (677)
T 3rc3_A 182 GVYCGPLKLLAHEIFEKSN-AAGVPCDLV---TG-----------EERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVID 246 (677)
T ss_dssp EEEEESSHHHHHHHHHHHH-HTTCCEEEE---CS-----------SCEECCSTTCCCCSEEEEEGGGCCSSSCEEEEEEC
T ss_pred eEEEeCHHHHHHHHHHHHH-hcCCcEEEE---EC-----------CeeEEecCCCcccceeEecHhHhhhcccCCEEEEe
Confidence 3888999999999999984 456654443 22 23346678887777 3222 233455555
Q ss_pred ---EecCCCCCchhhhhHHHHHHHHhcccCC-CCceEEEEeccc-CHHHHHHHhhcccCCCCcEEEecCeecceeEEEec
Q psy2470 321 ---LSILAPGGQDVIGEDMKAFAEQLKPLKR-TQLKLIISSATV-DAEEICQFYNISASSNATILSVKGHLYPVSVYYSN 395 (858)
Q Consensus 321 ---R~l~~~~~~d~ll~~lk~~~~~l~~~~~-~~~q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~ 395 (858)
++++ .++...+.+.+. ..+ ++.|++++|||. ..+.+....+ ....+.-..+ .....+..
T Consensus 247 EaH~l~d----~~~g~~~~~~l~-----~l~~~~i~il~~SAT~~~i~~l~~~~~-----~~~~v~~~~r--~~~l~~~~ 310 (677)
T 3rc3_A 247 EIQMIRD----PARGWAWTRALL-----GLCAEEVHLCGEPAAIDLVMELMYTTG-----EEVEVRDYKR--LTPISVLD 310 (677)
T ss_dssp SGGGGGC----TTTHHHHHHHHH-----HCCEEEEEEEECGGGHHHHHHHHHHHT-----CCEEEEECCC--SSCEEECS
T ss_pred cceecCC----ccchHHHHHHHH-----ccCccceEEEeccchHHHHHHHHHhcC-----CceEEEEeee--cchHHHHH
Confidence 6677 667666666655 344 678999999996 3344444433 1111111111 11112211
Q ss_pred CCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCC--
Q psy2470 396 DPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPR-- 473 (858)
Q Consensus 396 ~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~-- 473 (858)
.... .+.....|+ +||++++++++.+++.|++. ++.+.++||+|++++|.++++.|++
T Consensus 311 ~~l~------------~l~~~~~g~-iIf~~s~~~ie~la~~L~~~-------g~~v~~lHG~L~~~~R~~~~~~F~~~~ 370 (677)
T 3rc3_A 311 HALE------------SLDNLRPGD-CIVCFSKNDIYSVSRQIEIR-------GLESAVIYGSLPPGTKLAQAKKFNDPN 370 (677)
T ss_dssp SCCC------------SGGGCCTTE-EEECSSHHHHHHHHHHHHHT-------TCCCEEECTTSCHHHHHHHHHHHHCTT
T ss_pred HHHH------------HHHhcCCCC-EEEEcCHHHHHHHHHHHHhc-------CCCeeeeeccCCHHHHHHHHHHHHccC
Confidence 1111 111223454 78889999999999999976 7889999999999999999999998
Q ss_pred CcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC----CceEEEeh-hh
Q psy2470 474 AMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR----SGHVYRKN-FM 548 (858)
Q Consensus 474 g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g----~G~~~rL~-~~ 548 (858)
|+++||||||++|+|||| +|++|||+|++|. .||+..+. . ..|+|.++|.||+|||||.| +|.||+++ ++
T Consensus 371 g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~-~--~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d 445 (677)
T 3rc3_A 371 DPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER-E--LEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHED 445 (677)
T ss_dssp SSCCEEEECGGGGSSCCC-CBSEEEESCSBC---------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTH
T ss_pred CCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc-c--cccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecch
Confidence 999999999999999999 9999999999887 78877443 2 46999999999999999999 48999999 33
Q ss_pred ---HhhhhhhhhccCCCCCCCCCCCccccCcc
Q psy2470 549 ---YNRLFIHFCVSRNIPTIPNDPKDVKCDVM 577 (858)
Q Consensus 549 ---~~~l~~~~~~~~~~p~~~~~Pei~r~~L~ 577 (858)
+..+.. . .. |++.+.++.
T Consensus 446 ~~~~~~~~~-----~---~~---~~i~~~~l~ 466 (677)
T 3rc3_A 446 LSLLKEILK-----R---PV---DPIRAAGLH 466 (677)
T ss_dssp HHHHHHHHH-----S---CC---CCCCCEEEC
T ss_pred HHHHHHHHh-----c---Cc---chhhhccCC
Confidence 344444 4 44 888888887
No 27
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.6e-30 Score=303.60 Aligned_cols=290 Identities=12% Similarity=0.090 Sum_probs=174.7
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCC-cCccEeeeeeEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGC-RMDFEYISRGYM 284 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~-~~g~~~~~vG~~ 284 (858)
+.|+||||||++++ +|.+. .+.. +....++|+++|+++|+.|+++++.+..+. .+... .+++
T Consensus 163 l~apTGsGKT~~~~-----~~il~----~l~~-----~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~---~~~~ 225 (508)
T 3fho_A 163 GQSQSGTGKTAAFA-----LTMLS----RVDA-----SVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTA---FGIK 225 (508)
T ss_dssp EECCSSTTSHHHHH-----HHHHH----HSCT-----TCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEE---C---
T ss_pred EECCCCccHHHHHH-----HHHHH----HHHh-----CCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEE---EEeC
Confidence 46999999994333 33222 1111 122346899999999999999988654332 22222 2222
Q ss_pred EeccceeecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 285 FRKGRMKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 285 vr~~~~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
..........++|+|+|||+|++ +.. ...+..+.+| +..+ ..++...+.+... ..+++.|+++|
T Consensus 226 ~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~---~~~~~~~~~~i~~-----~~~~~~~~i~l 297 (508)
T 3fho_A 226 DSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLD---QQGLGDQSMRIKH-----LLPRNTQIVLF 297 (508)
T ss_dssp -------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTT---C--CHHHHHHHHH-----HSCTTCEEEEE
T ss_pred CcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcc---cCCcHHHHHHHHH-----hCCcCCeEEEE
Confidence 22222223368999999999998 333 3345666655 3332 0122222322222 45678999999
Q ss_pred ecccC--HHHHHHHhhcccCCCCcEEEecCeecc---eeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHH
Q psy2470 357 SATVD--AEEICQFYNISASSNATILSVKGHLYP---VSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQI 431 (858)
Q Consensus 357 SAT~~--~~~~~~~~~~~~~~~~~~i~v~g~~~~---v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i 431 (858)
|||++ .+.+...+.. ++..+.+.....+ +...+.... ....+...+..++.....+++|||+++++.+
T Consensus 298 SAT~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a 370 (508)
T 3fho_A 298 SATFSERVEKYAERFAP----NANEIRLKTEELSVEGIKQLYMDCQ---SEEHKYNVLVELYGLLTIGQSIIFCKKKDTA 370 (508)
T ss_dssp ESCCSTHHHHHHHHHST----TCEEECCCCCC----CCCCEEEEC-----CHHHHHHHHHHHC---CCCEEEBCSSTTTT
T ss_pred eCCCCHHHHHHHHHhcC----CCeEEEeccccCCcccceEEEEECC---chHHHHHHHHHHHHhcCCCcEEEEECCHHHH
Confidence 99994 6666666653 3444444433322 222222221 1123455566666666678999999999999
Q ss_pred HHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCC
Q psy2470 432 EHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPN 511 (858)
Q Consensus 432 ~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~ 511 (858)
+.+++.|.+. ++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+++.+....
T Consensus 371 ~~l~~~L~~~-------~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~---- 439 (508)
T 3fho_A 371 EEIARRMTAD-------GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQA---- 439 (508)
T ss_dssp THHHHHHTTT-------TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC------
T ss_pred HHHHHHHHhC-------CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCccc----
Confidence 9999999865 78899999999999999999999999999999999999999999999999944332111
Q ss_pred CCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 512 TLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 512 ~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
...|..+|.||+|||||.|. |.|+.++
T Consensus 440 --------~~~s~~~~~Qr~GRagR~g~~g~~i~l~ 467 (508)
T 3fho_A 440 --------GRPDPQTYLHRIGRTGRFGRVGVSINFV 467 (508)
T ss_dssp -----------CTHHHHHTTSCCC-----CEEEEEE
T ss_pred --------CCCCHHHHHHHhhhcCCCCCCcEEEEEE
Confidence 12578899999999999986 9999998
No 28
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.96 E-value=2.2e-29 Score=326.46 Aligned_cols=427 Identities=10% Similarity=0.052 Sum_probs=261.6
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
+-+.|+|||||| .++.+|.+.... +. ....+++++|+|+||.|.+..+.+.++...|.. ||.
T Consensus 945 vlv~APTGSGKT-----liaelail~~l~----~~------~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~---V~~ 1006 (1724)
T 4f92_B 945 VFVGAPTGSGKT-----ICAEFAILRMLL----QS------SEGRCVYITPMEALAEQVYMDWYEKFQDRLNKK---VVL 1006 (1724)
T ss_dssp EEEECCTTSCCH-----HHHHHHHHHHHH----HC------TTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCC---EEE
T ss_pred EEEEeCCCCCch-----HHHHHHHHHHHH----hC------CCCEEEEEcChHHHHHHHHHHHHHHhchhcCCE---EEE
Confidence 445799999999 444444322111 10 112479999999999999999988887777776 554
Q ss_pred EEeccc---eeecceeEEEeecCcccc----CCCccCCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCc
Q psy2470 284 MFRKGR---MKILVSKIFKMSQGKPSD----SGVEPISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQL 351 (858)
Q Consensus 284 ~vr~~~---~~~~~t~I~v~TpGrLl~----~~~~~~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~ 351 (858)
..+... .....++|+|||||++.. ......++++.++ .++.. +.-..+..++..+. .+....+++.
T Consensus 1007 ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~-~i~~~~~~~~ 1084 (1724)
T 4f92_B 1007 LTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMR-YISSQIERPI 1084 (1724)
T ss_dssp CCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHH-HHHHTTSSCC
T ss_pred EECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-CCCccHHHHHHHHH-HHHhhcCCCc
Confidence 333211 122458999999999744 2233345666655 44441 11112222333222 1112456789
Q ss_pred eEEEEeccc-CHHHHHHHhhcccCCCCcEEEecCee--cceeEEEecCCccchHH---HHHHHHHH-HHhhCCCCCEEEE
Q psy2470 352 KLIISSATV-DAEEICQFYNISASSNATILSVKGHL--YPVSVYYSNDPVVNYVQ---GVVDTAIK-IHESMPVGDILAF 424 (858)
Q Consensus 352 q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~--~~v~~~~~~~~~~~~~~---~~~~~l~~-i~~~~~~g~iLVF 424 (858)
|+|+||||+ |++.+++|++.. ......+.... .|.+.+........... .....+.. +....+.+++|||
T Consensus 1085 riI~lSATl~N~~dla~WL~~~---~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF 1161 (1724)
T 4f92_B 1085 RIVALSSSLSNAKDVAHWLGCS---ATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVF 1161 (1724)
T ss_dssp EEEEEESCBTTHHHHHHHHTCC---STTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEE
T ss_pred eEEEEeCCCCCHHHHHHHhCCC---CCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeee
Confidence 999999999 999999999742 23344443333 34444433222222111 11111222 2233456899999
Q ss_pred cCCHHHHHHHHHHHHHhccCC-C--------------------------CcceEEEeccCCCCHHHHHHhcCCCCCCcEE
Q psy2470 425 VIGLEQIEHIIGILKQYHNQR-E--------------------------DLKLLILPMHGSLPNNEQIKVFRPTPRAMRK 477 (858)
Q Consensus 425 l~t~~~i~~l~~~L~~~~~~~-~--------------------------~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~k 477 (858)
++++.+++.++..|....... . .-...|..+||+|++++|..+++.|++|.++
T Consensus 1162 ~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~ 1241 (1724)
T 4f92_B 1162 VPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQ 1241 (1724)
T ss_dssp ESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBC
T ss_pred CCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCe
Confidence 999999999998875321100 0 0122377899999999999999999999999
Q ss_pred EEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh-hhHhhhh
Q psy2470 478 IVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN-FMYNRLF 553 (858)
Q Consensus 478 VlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~-~~~~~l~ 553 (858)
|||||+++|+|||+|++.+||.+. ..||.... ...|.+..+|.||+|||||.|. |.|+.+. ..-....
T Consensus 1242 VLvaT~tlA~GVnlPa~~VVI~~~----~~~dg~~~----~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~ 1313 (1724)
T 4f92_B 1242 VVVASRSLCWGMNVAAHLVIIMDT----QYYNGKIH----AYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFF 1313 (1724)
T ss_dssp EEEEEGGGSSSCCCCBSEEEEECS----EEEETTTT----EEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHH
T ss_pred EEEEChHHHcCCCCCccEEEEecC----ccccCccc----ccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHH
Confidence 999999999999999999999632 34764432 3368999999999999999984 9999988 2211222
Q ss_pred hhhhccCCCCCCCCCCCccccCcccchhhhHHH----------------HHHHhhhHhHhHhh---h-CCCCCccc---c
Q psy2470 554 IHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFF----------------QYLLEAGWCYDTKL---I-GITEPRRI---S 610 (858)
Q Consensus 554 ~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~----------------~~l~~~~~~l~~~~---~-~~~~~~~~---~ 610 (858)
.. . -++|+.+++.|. ..+..++ +|+..+-..-.... . +....... .
T Consensus 1314 ~~----l-----l~~~~pveS~L~--~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~ 1382 (1724)
T 4f92_B 1314 KK----F-----LYEPLPVESHLD--HCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSD 1382 (1724)
T ss_dssp HH----H-----TTSCBCCCCCGG--GSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHH
T ss_pred HH----H-----hCCCCceeeecc--cchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccccccchhhHHH
Confidence 21 1 123777888875 3343332 23322211100000 0 00000000 1
Q ss_pred cCCchHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhH
Q psy2470 611 VTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDI 685 (858)
Q Consensus 611 ~l~~a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ 685 (858)
+++..+..+++.|.+.|++ ..++......| ++|+.++.++++|..+++ +.+++.+.....++
T Consensus 1383 ~l~~lv~~~l~~L~~~~~I-----~~~~~~~l~~T-----~lG~i~s~~yi~~~t~~~---~~~~l~~~~~~~~~ 1444 (1724)
T 4f92_B 1383 HLSELVEQTLSDLEQSKCI-----SIEDEMDVAPL-----NLGMIAAYYYINYTTIEL---FSMSLNAKTKVRGL 1444 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTSE-----EEETTTEEEEC-----HHHHHHHHTTCCHHHHHH---HHHHCCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHCCCE-----EEcCCCCEeec-----HHHHHHHHHCCCHHHHHH---HHHhccccCCHHHH
Confidence 1222456788999999998 32222222245 999999999999999887 56666555444443
No 29
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.96 E-value=5.3e-30 Score=304.70 Aligned_cols=102 Identities=22% Similarity=0.172 Sum_probs=94.4
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCC-----
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIP----- 492 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp----- 492 (858)
+.++|||++|++.++.+++.|.+. |+.+..|||++.+.+|..+.+.++.| +|+||||+|+||+||+
T Consensus 432 ~~pvLVft~s~~~se~Ls~~L~~~-------gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V 502 (844)
T 1tf5_A 432 GQPVLVGTVAVETSELISKLLKNK-------GIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGV 502 (844)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHTT-------TCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTS
T ss_pred CCcEEEEECCHHHHHHHHHHHHHC-------CCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchh
Confidence 457999999999999999999977 89999999999999998888888877 5999999999999999
Q ss_pred ---CeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 493 ---GIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 493 ---~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+.|||| || .|.|...|.||+|||||.|. |.++.++
T Consensus 503 ~~~ggl~VIn--------~d----------~p~s~r~y~hr~GRTGRqG~~G~s~~~v 542 (844)
T 1tf5_A 503 KELGGLAVVG--------TE----------RHESRRIDNQLRGRSGRQGDPGITQFYL 542 (844)
T ss_dssp GGGTSEEEEE--------SS----------CCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred hhcCCcEEEE--------ec----------CCCCHHHHHhhcCccccCCCCCeEEEEe
Confidence 8999999 76 78999999999999999997 9998877
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.4e-29 Score=310.01 Aligned_cols=298 Identities=15% Similarity=0.098 Sum_probs=203.6
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
+-+.|+||||||+++ .+|.... + .. ..++++++||++|+.|.+.++.+.++ .+|..
T Consensus 104 vLV~apTGSGKTlva-----~lai~~~----l---~~-----g~rvL~l~PtkaLa~Q~~~~l~~~~~-~vgll------ 159 (1010)
T 2xgj_A 104 VLVSAHTSAGKTVVA-----EYAIAQS----L---KN-----KQRVIYTSPIKALSNQKYRELLAEFG-DVGLM------ 159 (1010)
T ss_dssp EEEECCTTSCHHHHH-----HHHHHHH----H---HT-----TCEEEEEESSHHHHHHHHHHHHHHHS-CEEEE------
T ss_pred EEEECCCCCChHHHH-----HHHHHHH----h---cc-----CCeEEEECChHHHHHHHHHHHHHHhC-CEEEE------
Confidence 456799999999433 2222211 1 11 13589999999999999999988777 43333
Q ss_pred EEeccceeecceeEEEeecCcccc-CC-CccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-SG-VEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~~-~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
. ++......++|+|+|||+|.+ +. ....+.++.+| ++.+ .+.-..+...+. ..+++.|+++
T Consensus 160 -t-Gd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d----~~rg~~~e~il~-----~l~~~~~il~ 228 (1010)
T 2xgj_A 160 -T-GDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD----KERGVVWEETII-----LLPDKVRYVF 228 (1010)
T ss_dssp -C-SSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC----TTTHHHHHHHHH-----HSCTTCEEEE
T ss_pred -e-CCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcc----cchhHHHHHHHH-----hcCCCCeEEE
Confidence 2 222333468999999999988 33 33456677766 5555 332222222222 4567899999
Q ss_pred Eeccc-CHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCc----------cc-----hH-----------------
Q psy2470 356 SSATV-DAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPV----------VN-----YV----------------- 402 (858)
Q Consensus 356 ~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~----------~~-----~~----------------- 402 (858)
||||+ +...|++|+.........++..+.+..|++.++..... .. +.
T Consensus 229 LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 308 (1010)
T 2xgj_A 229 LSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNST 308 (1010)
T ss_dssp EECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----------
T ss_pred EcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccccc
Confidence 99999 78889998763211123455556666676665543110 00 00
Q ss_pred -------------------HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhcc-------------------C
Q psy2470 403 -------------------QGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHN-------------------Q 444 (858)
Q Consensus 403 -------------------~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~-------------------~ 444 (858)
...+..+...+.....+++|||++++..++.+++.|....- +
T Consensus 309 ~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l 388 (1010)
T 2xgj_A 309 DSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALL 388 (1010)
T ss_dssp --------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTS
T ss_pred ccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhc
Confidence 11122234444444456899999999999999998864200 0
Q ss_pred CC-C------------cceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCC
Q psy2470 445 RE-D------------LKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPN 511 (858)
Q Consensus 445 ~~-~------------~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~ 511 (858)
.+ . ....+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+. ...||..
T Consensus 389 ~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~ 464 (1010)
T 2xgj_A 389 PETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQ 464 (1010)
T ss_dssp CGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----SEEECSS
T ss_pred chhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----CcccCCc
Confidence 00 0 01227889999999999999999999999999999999999999999999993 2336633
Q ss_pred CCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh
Q psy2470 512 TLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN 546 (858)
Q Consensus 512 ~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~ 546 (858)
. ..|.|..+|.||+|||||.|. |.||.++
T Consensus 465 ~------~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~ 496 (1010)
T 2xgj_A 465 Q------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMI 496 (1010)
T ss_dssp C------EEECCHHHHHHHHTTBCCTTTCSSEEEEEEE
T ss_pred C------CccCCHHHHhHhhhhcccCCCCCceEEEEEE
Confidence 2 269999999999999999985 9999999
No 31
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.96 E-value=3e-29 Score=287.38 Aligned_cols=265 Identities=16% Similarity=0.074 Sum_probs=171.0
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+.... . ...++++++|||+||.|+++.+. +. . +++..
T Consensus 13 v~a~TGSGKT-----~~~l~~~l~~~~------~-----~~~~~lil~Ptr~La~Q~~~~l~---~~----~---v~~~~ 66 (440)
T 1yks_A 13 LDFHPGAGKT-----RRFLPQILAECA------R-----RRLRTLVLAPTRVVLSEMKEAFH---GL----D---VKFHT 66 (440)
T ss_dssp ECCCTTSSTT-----TTHHHHHHHHHH------H-----TTCCEEEEESSHHHHHHHHHHTT---TS----C---EEEES
T ss_pred EEcCCCCCHH-----HHHHHHHHHHHH------h-----cCCeEEEEcchHHHHHHHHHHHh---cC----C---eEEec
Confidence 5699999999 444444332111 1 11368999999999999988763 11 2 44332
Q ss_pred eccceeecceeEEEeecCcccc-CCC---------ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCC
Q psy2470 286 RKGRMKILVSKIFKMSQGKPSD-SGV---------EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRT 349 (858)
Q Consensus 286 r~~~~~~~~t~I~v~TpGrLl~-~~~---------~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~ 349 (858)
+... .++|||++++ +.. ...+.++.++ ++ + .+.++.++++..+. .++
T Consensus 67 ~~~~--------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~--~~~~~~~~~~~~~~------~~~ 129 (440)
T 1yks_A 67 QAFS--------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-D--PASIAARGWAAHRA------RAN 129 (440)
T ss_dssp SCCC--------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-S--HHHHHHHHHHHHHH------HTT
T ss_pred ccce--------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-C--cchHHHHHHHHHHh------ccC
Confidence 2110 3789999887 332 1235666665 43 3 11234456666554 146
Q ss_pred CceEEEEecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHH
Q psy2470 350 QLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLE 429 (858)
Q Consensus 350 ~~q~il~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~ 429 (858)
+.|+++||||+... ...+... +.++..+.. .+........ +..+ .. ..+++|||||+++
T Consensus 130 ~~~~l~~SAT~~~~-~~~~~~~----~~~~~~~~~-------~~~~~~~~~~----~~~l----~~-~~~~~lVF~~s~~ 188 (440)
T 1yks_A 130 ESATILMTATPPGT-SDEFPHS----NGEIEDVQT-------DIPSEPWNTG----HDWI----LA-DKRPTAWFLPSIR 188 (440)
T ss_dssp SCEEEEECSSCTTC-CCSSCCC----SSCEEEEEC-------CCCSSCCSSS----CHHH----HH-CCSCEEEECSCHH
T ss_pred CceEEEEeCCCCch-hhhhhhc----CCCeeEeee-------ccChHHHHHH----HHHH----Hh-cCCCEEEEeCCHH
Confidence 78999999999432 1111110 122222111 1111111111 1111 12 2689999999999
Q ss_pred HHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceec-
Q psy2470 430 QIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWF- 508 (858)
Q Consensus 430 ~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~y- 508 (858)
+++.+++.|++. ++.+..+|| ++|.++++.|++|+.+||||||++|+||||| |++|||+|+.+.+.|
T Consensus 189 ~a~~l~~~L~~~-------~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~ 256 (440)
T 1yks_A 189 AANVMAASLRKA-------GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLV 256 (440)
T ss_dssp HHHHHHHHHHHT-------TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEE
T ss_pred HHHHHHHHHHHc-------CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeec
Confidence 999999999987 788999999 5688999999999999999999999999999 999999999888875
Q ss_pred cCCCCCCcceeeecCHhhHHHhhcccCCCC--CceEEEeh
Q psy2470 509 NPNTLTNSLVVVPISKASAVQRAGRAGRVR--SGHVYRKN 546 (858)
Q Consensus 509 d~~~g~~~l~~~pis~~~~~qR~GRaGR~g--~G~~~rL~ 546 (858)
+...++......|.+.++|.||+|||||.| +|.||.++
T Consensus 257 ~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~ 296 (440)
T 1yks_A 257 DEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 296 (440)
T ss_dssp TTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEe
Confidence 444445555568999999999999999984 59999996
No 32
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=5.5e-29 Score=273.36 Aligned_cols=268 Identities=15% Similarity=0.175 Sum_probs=184.4
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+||||||+++ .+|.+. . ...+|+++|+++++.|.++++.+ ++...+.. ++...
T Consensus 36 v~~~TGsGKT~~~-----~~~~~~----------~-----~~~~liv~P~~~L~~q~~~~~~~-~~~~~~~~---~~~~~ 91 (337)
T 2z0m_A 36 VRAKTGSGKTAAY-----AIPILE----------L-----GMKSLVVTPTRELTRQVASHIRD-IGRYMDTK---VAEVY 91 (337)
T ss_dssp EECCTTSSHHHHH-----HHHHHH----------H-----TCCEEEECSSHHHHHHHHHHHHH-HTTTSCCC---EEEEC
T ss_pred EEcCCCCcHHHHH-----HHHHHh----------h-----cCCEEEEeCCHHHHHHHHHHHHH-HhhhcCCc---EEEEE
Confidence 4699999999443 333221 0 12479999999999999988854 33333333 33222
Q ss_pred eccce-----eecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCce
Q psy2470 286 RKGRM-----KILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLK 352 (858)
Q Consensus 286 r~~~~-----~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q 352 (858)
+.... ....++|+|+|||+|++ +.. ...+.++.++ ++.+ .++...+...+. ..+...|
T Consensus 92 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~----~~~~~~~~~~~~-----~~~~~~~ 162 (337)
T 2z0m_A 92 GGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFE----MGFIDDIKIILA-----QTSNRKI 162 (337)
T ss_dssp TTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHH----TTCHHHHHHHHH-----HCTTCSE
T ss_pred CCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhc----cccHHHHHHHHh-----hCCcccE
Confidence 22111 11347899999999998 333 2345666655 4444 333332222222 4556789
Q ss_pred EEEEecccCHH---HHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHH
Q psy2470 353 LIISSATVDAE---EICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLE 429 (858)
Q Consensus 353 ~il~SAT~~~~---~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~ 429 (858)
+++||||++.. .+..++. ++..+.......+++..+....... .. ....+.....+++|||+++.+
T Consensus 163 ~~~~SAT~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~lvf~~~~~ 231 (337)
T 2z0m_A 163 TGLFSATIPEEIRKVVKDFIT-----NYEEIEACIGLANVEHKFVHVKDDW--RS----KVQALRENKDKGVIVFVRTRN 231 (337)
T ss_dssp EEEEESCCCHHHHHHHHHHSC-----SCEEEECSGGGGGEEEEEEECSSSS--HH----HHHHHHTCCCSSEEEECSCHH
T ss_pred EEEEeCcCCHHHHHHHHHhcC-----CceeeecccccCCceEEEEEeChHH--HH----HHHHHHhCCCCcEEEEEcCHH
Confidence 99999999543 3444554 3444443333334555444332221 11 123344556789999999999
Q ss_pred HHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceecc
Q psy2470 430 QIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFN 509 (858)
Q Consensus 430 ~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd 509 (858)
+++.+++.|+ .+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+ |+
T Consensus 232 ~~~~l~~~l~-----------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~--------~~ 292 (337)
T 2z0m_A 232 RVAKLVRLFD-----------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN--------FD 292 (337)
T ss_dssp HHHHHHTTCT-----------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE--------SS
T ss_pred HHHHHHHHhh-----------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEE--------ec
Confidence 9999887765 2567899999999999999999999999999999999999999999999 65
Q ss_pred CCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 510 PNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 510 ~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
.|.|.++|.||+||+||.|. |.|+.++
T Consensus 293 ----------~~~s~~~~~Q~~GR~gR~g~~g~~~~~~ 320 (337)
T 2z0m_A 293 ----------APQDLRTYIHRIGRTGRMGRKGEAITFI 320 (337)
T ss_dssp ----------CCSSHHHHHHHHTTBCGGGCCEEEEEEE
T ss_pred ----------CCCCHHHhhHhcCccccCCCCceEEEEE
Confidence 56789999999999999986 9999988
No 33
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.95 E-value=1.8e-29 Score=286.79 Aligned_cols=275 Identities=14% Similarity=0.071 Sum_probs=175.0
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.... . . ....+||++|||+||.|+++++.+. +. .|.. ++...
T Consensus 41 v~apTGsGKT-----~~~l~~~~~~----~---~-----~~~~~lil~Pt~~L~~q~~~~~~~~-~~-~~~~---v~~~~ 98 (414)
T 3oiy_A 41 MVAPTGVGKT-----TFGMMTALWL----A---R-----KGKKSALVFPTVTLVKQTLERLQKL-AD-EKVK---IFGFY 98 (414)
T ss_dssp CCSCSSSSHH-----HHHHHHHHHH----H---T-----TTCCEEEEESSHHHHHHHHHHHHHH-CC-SSCC---EEECC
T ss_pred EEeCCCCCHH-----HHHHHHHHHH----h---c-----CCCEEEEEECCHHHHHHHHHHHHHH-cc-CCce---EEEEE
Confidence 5799999999 3444442221 1 1 1236899999999999999988653 33 4444 44333
Q ss_pred eccce----------eecceeEEEeecCccccCCCccCCCcccEE------EecCCCCC-------chhhhhHHHHHHHH
Q psy2470 286 RKGRM----------KILVSKIFKMSQGKPSDSGVEPISQSYLVE------LSILAPGG-------QDVIGEDMKAFAEQ 342 (858)
Q Consensus 286 r~~~~----------~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl------R~l~~~~~-------~d~ll~~lk~~~~~ 342 (858)
+..+. ....++|+|+|||+|++......+.++.+| +..+.+.+ .+|....++.+...
T Consensus 99 g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~ 178 (414)
T 3oiy_A 99 SSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFST 178 (414)
T ss_dssp TTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHh
Confidence 22221 112389999999999883333444555555 11110000 01111212222222
Q ss_pred hc-----ccCC--CCceEEEEeccc-CH---HHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHH
Q psy2470 343 LK-----PLKR--TQLKLIISSATV-DA---EEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIK 411 (858)
Q Consensus 343 l~-----~~~~--~~~q~il~SAT~-~~---~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~ 411 (858)
+. ...+ ++.|+++||||+ +. ..+...+.. ..+.........+...+.... ..+. +..
T Consensus 179 ~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~---~~~~----l~~ 246 (414)
T 3oiy_A 179 IKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-----FTVGRLVSVARNITHVRISSR---SKEK----LVE 246 (414)
T ss_dssp HHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS-----CCSSCCCCCCCSEEEEEESSC---CHHH----HHH
T ss_pred cccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc-----cCcCccccccccchheeeccC---HHHH----HHH
Confidence 11 1111 678999999994 21 133333321 010001111234455554432 2222 333
Q ss_pred HHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEE-eccCCCCHHHHHHhcCCCCCCcEEEEEe----cCccc
Q psy2470 412 IHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLIL-PMHGSLPNNEQIKVFRPTPRAMRKIVIA----TNIAE 486 (858)
Q Consensus 412 i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~-~LHg~l~q~~r~~v~~~f~~g~~kVlvA----TdvAe 486 (858)
++.. .++++|||+++++.++.+++.|++. ++.+. .+||+ +| + ++.|++|+.+|||| ||+++
T Consensus 247 ~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~~h~~----~r-~-~~~f~~g~~~vLvat~s~T~~~~ 312 (414)
T 3oiy_A 247 LLEI-FRDGILIFAQTEEEGKELYEYLKRF-------KFNVGETWSEF----EK-N-FEDFKVGKINILIGVQAYYGKLT 312 (414)
T ss_dssp HHHH-HCSSEEEEESSHHHHHHHHHHHHHT-------TCCEEESSSCH----HH-H-HHHHHTTSCSEEEEECCTTCCCC
T ss_pred HHHH-cCCCEEEEECCHHHHHHHHHHHHHc-------CCceehhhcCc----ch-H-HHHHhCCCCeEEEEecCcCchhh
Confidence 3333 2478999999999999999999987 88888 99985 34 3 89999999999999 99999
Q ss_pred ccCCCCC-eeEEEcCCCccceeccCCCCCCcceeee--cCHhhHHHhhcccCCCC-----CceEEEeh
Q psy2470 487 TSITIPG-IVYVIDPGFVKARWFNPNTLTNSLVVVP--ISKASAVQRAGRAGRVR-----SGHVYRKN 546 (858)
Q Consensus 487 rgldIp~-V~~VId~g~~k~~~yd~~~g~~~l~~~p--is~~~~~qR~GRaGR~g-----~G~~~rL~ 546 (858)
+|+|||+ |++||+ || .| .+.++|.||+|||||.| +|.|+.++
T Consensus 313 ~GiDip~~v~~VI~--------~~----------~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 313 RGVDLPERIKYVIF--------WG----------TPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp CCCCCTTTCCEEEE--------ES----------CCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred ccCccccccCEEEE--------EC----------CCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 9999999 999999 66 56 78999999999999987 59999998
No 34
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.95 E-value=6.8e-29 Score=290.45 Aligned_cols=276 Identities=16% Similarity=0.143 Sum_probs=188.3
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++++|.+.. . ..+||++|+++|+.|..+++. .+|..+... .|...
T Consensus 45 v~apTGsGKT-----l~~~lp~l~~---------~------g~~lvi~P~~aL~~q~~~~l~-~~gi~~~~l---~~~~~ 100 (523)
T 1oyw_A 45 VVMPTGGGKS-----LCYQIPALLL---------N------GLTVVVSPLISLMKDQVDQLQ-ANGVAAACL---NSTQT 100 (523)
T ss_dssp EECSCHHHHH-----HHHHHHHHHS---------S------SEEEEECSCHHHHHHHHHHHH-HTTCCEEEE---CTTSC
T ss_pred EECCCCcHHH-----HHHHHHHHHh---------C------CCEEEECChHHHHHHHHHHHH-HcCCcEEEE---eCCCC
Confidence 4699999999 5555664431 0 136999999999999988874 456544332 11110
Q ss_pred ec------cceeecceeEEEeecCcccc-CC-CccCCCcccEE------EecCCCCCchhhhhH--HHHHHHHhcccCCC
Q psy2470 286 RK------GRMKILVSKIFKMSQGKPSD-SG-VEPISQSYLVE------LSILAPGGQDVIGED--MKAFAEQLKPLKRT 349 (858)
Q Consensus 286 r~------~~~~~~~t~I~v~TpGrLl~-~~-~~~~L~~~~vl------R~l~~~~~~d~ll~~--lk~~~~~l~~~~~~ 349 (858)
.. ........+|+|+||++|+. .. ......++.++ ...+ -|.||...+ +..+. ...+
T Consensus 101 ~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~--~g~~fr~~~~~l~~l~-----~~~~ 173 (523)
T 1oyw_A 101 REQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQ--WGHDFRPEYAALGQLR-----QRFP 173 (523)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCT--TSSCCCHHHHGGGGHH-----HHCT
T ss_pred HHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCc--CCCccHHHHHHHHHHH-----HhCC
Confidence 00 01112347999999999975 21 11122344444 2222 112232111 11222 2235
Q ss_pred CceEEEEecccCHH---HHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcC
Q psy2470 350 QLKLIISSATVDAE---EICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVI 426 (858)
Q Consensus 350 ~~q~il~SAT~~~~---~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~ 426 (858)
+.+++++|||.+.. .+.++++. ..+.+.+.+...|. ..|......+ ....+..++...+.+++|||++
T Consensus 174 ~~~~i~lSAT~~~~~~~~i~~~l~~----~~~~~~~~~~~r~~-l~~~v~~~~~----~~~~l~~~l~~~~~~~~IVf~~ 244 (523)
T 1oyw_A 174 TLPFMALTATADDTTRQDIVRLLGL----NDPLIQISSFDRPN-IRYMLMEKFK----PLDQLMRYVQEQRGKSGIIYCN 244 (523)
T ss_dssp TSCEEEEESCCCHHHHHHHHHHHTC----CSCEEEECCCCCTT-EEEEEEECSS----HHHHHHHHHHHTTTCCEEEECS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhCC----CCCeEEeCCCCCCc-eEEEEEeCCC----HHHHHHHHHHhcCCCcEEEEeC
Confidence 68999999999553 45555542 34555454432221 2222212222 2234555555556679999999
Q ss_pred CHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccce
Q psy2470 427 GLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKAR 506 (858)
Q Consensus 427 t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~ 506 (858)
|+++++.+++.|++. ++.+..+||+|++++|.++++.|++|+.+|||||+++++|||+|+|++||+
T Consensus 245 sr~~~e~l~~~L~~~-------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~------- 310 (523)
T 1oyw_A 245 SRAKVEDTAARLQSK-------GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH------- 310 (523)
T ss_dssp SHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE-------
T ss_pred CHHHHHHHHHHHHHC-------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEE-------
Confidence 999999999999987 888999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 507 WFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 507 ~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+ .|.|.++|.||+|||||.|. |.|+.+|
T Consensus 311 -~~----------~p~s~~~y~Qr~GRaGR~g~~~~~~l~~ 340 (523)
T 1oyw_A 311 -FD----------IPRNIESYYQETGRAGRDGLPAEAMLFY 340 (523)
T ss_dssp -SS----------CCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred -EC----------CCCCHHHHHHHhccccCCCCCceEEEEe
Confidence 66 57899999999999999995 9999999
No 35
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.95 E-value=6.3e-29 Score=284.10 Aligned_cols=272 Identities=16% Similarity=0.045 Sum_probs=181.9
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+.... +. ..++++++|||+||.|+++.+. |. . +++..
T Consensus 7 v~a~TGsGKT-----~~~l~~~l~~~~------~~-----g~~~lvl~Pt~~La~Q~~~~~~---~~----~---v~~~~ 60 (431)
T 2v6i_A 7 LDLHPGAGKT-----RRVLPQLVREAV------KK-----RLRTVILAPTRVVASEMYEALR---GE----P---IRYMT 60 (431)
T ss_dssp EECCTTSCTT-----TTHHHHHHHHHH------HT-----TCCEEEEESSHHHHHHHHHHTT---TS----C---EEEC-
T ss_pred EEcCCCCCHH-----HHHHHHHHHHHH------hC-----CCCEEEECcHHHHHHHHHHHhC---CC----e---EEEEe
Confidence 5799999999 333333221111 11 1368999999999999887663 32 3 44443
Q ss_pred ec-cceeecceeEEEeecCcccc-CCCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEe
Q psy2470 286 RK-GRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISS 357 (858)
Q Consensus 286 r~-~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~S 357 (858)
+. .....++..+.++|.|.+.+ +..+..+.++.+| ++ + ...+...+.++.+. .+++.|+++||
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~-~--~~~~~~~~~l~~~~------~~~~~~~l~~S 131 (431)
T 2v6i_A 61 PAVQSERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFL-D--PASVAARGYIETRV------SMGDAGAIFMT 131 (431)
T ss_dssp --------CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCC-S--HHHHHHHHHHHHHH------HTTSCEEEEEE
T ss_pred cCccccCCCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccC-C--ccHHHHHHHHHHHh------hCCCCcEEEEe
Confidence 33 22233345677888888877 5556667777766 32 3 00223344444433 24679999999
Q ss_pred cccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHH
Q psy2470 358 ATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGI 437 (858)
Q Consensus 358 AT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~ 437 (858)
||+... +..+.. .+.++..+... +....... +...+.. ..|++|||+|++++++.+++.
T Consensus 132 AT~~~~-~~~~~~----~~~~i~~~~~~-------~~~~~~~~--------~~~~l~~-~~~~~lVF~~~~~~~~~l~~~ 190 (431)
T 2v6i_A 132 ATPPGT-TEAFPP----SNSPIIDEETR-------IPDKAWNS--------GYEWITE-FDGRTVWFVHSIKQGAEIGTC 190 (431)
T ss_dssp SSCTTC-CCSSCC----CSSCCEEEECC-------CCSSCCSS--------CCHHHHS-CSSCEEEECSSHHHHHHHHHH
T ss_pred CCCCcc-hhhhcC----CCCceeecccc-------CCHHHHHH--------HHHHHHc-CCCCEEEEeCCHHHHHHHHHH
Confidence 999432 111111 12333333221 10111111 1122222 368999999999999999999
Q ss_pred HHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcc
Q psy2470 438 LKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSL 517 (858)
Q Consensus 438 L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l 517 (858)
|++. ++.+..+||+ +|.++++.|++|+.+||||||++|+||||| +.+|||+|..+.+.|| ..++...
T Consensus 191 L~~~-------~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~ 257 (431)
T 2v6i_A 191 LQKA-------GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQ 257 (431)
T ss_dssp HHHT-------TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEE
T ss_pred HHHc-------CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeec
Confidence 9977 7889999997 578899999999999999999999999999 9999999999988888 5666667
Q ss_pred eeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 518 VVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 518 ~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
...|.+.++|.||+|||||.|. +.|+-+|
T Consensus 258 ~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 258 GPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp EEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred ccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 7799999999999999999985 3344333
No 36
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.95 E-value=1.4e-28 Score=291.69 Aligned_cols=117 Identities=21% Similarity=0.147 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhh--CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEE
Q psy2470 403 QGVVDTAIKIHES--MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVI 480 (858)
Q Consensus 403 ~~~~~~l~~i~~~--~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlv 480 (858)
..+...+...+.. ..+.++|||++|++.++.+++.|++. |+.+..|||++.+.++..+.++|++| .|+|
T Consensus 424 ~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~-------gi~~~vLnak~~~rEa~iia~agr~G--~VtI 494 (853)
T 2fsf_A 424 AEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKA-------GIKHNVLNAKFHANEAAIVAQAGYPA--AVTI 494 (853)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHT-------TCCCEECCTTCHHHHHHHHHTTTSTT--CEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHC-------CCCEEEecCChhHHHHHHHHhcCCCC--eEEE
Confidence 3455555554422 33567999999999999999999987 89999999999999999999999998 5999
Q ss_pred ecCcccccCCCCC--------------------------------e-----eEEEcCCCccceeccCCCCCCcceeeecC
Q psy2470 481 ATNIAETSITIPG--------------------------------I-----VYVIDPGFVKARWFNPNTLTNSLVVVPIS 523 (858)
Q Consensus 481 ATdvAergldIp~--------------------------------V-----~~VId~g~~k~~~yd~~~g~~~l~~~pis 523 (858)
|||+|+||+||+. | .|||| |+ .|.|
T Consensus 495 ATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~--------te----------~pes 556 (853)
T 2fsf_A 495 ATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIG--------TE----------RHES 556 (853)
T ss_dssp EESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEE--------SS----------CCSS
T ss_pred ecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEE--------cc----------CCCC
Confidence 9999999999997 4 69999 66 7889
Q ss_pred HhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 524 KASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 524 ~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
...|.||+|||||.|. |.+..+.
T Consensus 557 ~riy~qr~GRTGRqGd~G~s~~fl 580 (853)
T 2fsf_A 557 RRIDNQLRGRSGRQGDAGSSRFYL 580 (853)
T ss_dssp HHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred HHHHHhhccccccCCCCeeEEEEe
Confidence 9999999999999997 9988776
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.95 E-value=9.4e-28 Score=311.33 Aligned_cols=415 Identities=12% Similarity=0.085 Sum_probs=246.5
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHh---CCcCccEeee
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEM---GCRMDFEYIS 280 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~---g~~~g~~~~~ 280 (858)
+-+.|||||||| .++.+|.+........... ........++.++|+|.||.|+...+.+.+ |.+++..
T Consensus 98 ~lv~APTGsGKT-----lva~l~il~~l~~~~~~~~-~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~--- 168 (1724)
T 4f92_B 98 LLLCAPTGAGKT-----NVALMCMLREIGKHINMDG-TINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAEL--- 168 (1724)
T ss_dssp EEEECCTTSCCH-----HHHHHHHHHHHGGGCCTTS-SCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEEC---
T ss_pred EEEEeCCcchHH-----HHHHHHHHHHHHhhccccc-cccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEE---
Confidence 557899999999 3333432221111111100 011123357999999999999998886654 3343333
Q ss_pred eeEEEeccceeecceeEEEeecCccccCCCc----cCCCcccEE-----EecCCCCCch---hhhhHHHHHHHHhcccCC
Q psy2470 281 RGYMFRKGRMKILVSKIFKMSQGKPSDSGVE----PISQSYLVE-----LSILAPGGQD---VIGEDMKAFAEQLKPLKR 348 (858)
Q Consensus 281 vG~~vr~~~~~~~~t~I~v~TpGrLl~~~~~----~~L~~~~vl-----R~l~~~~~~d---~ll~~lk~~~~~l~~~~~ 348 (858)
.| ...........++|+|+||+++--+... ..++.+.+| .+++ ++ .+..++..+.... ...+
T Consensus 169 tG-d~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~----d~RG~~lE~~l~rl~~~~-~~~~ 242 (1724)
T 4f92_B 169 TG-DHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLH----DDRGPVLEALVARAIRNI-EMTQ 242 (1724)
T ss_dssp CS-SCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGG----STTHHHHHHHHHHHHHHH-HHHT
T ss_pred EC-CCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcC----CccHHHHHHHHHHHHHHH-HhCC
Confidence 22 1111112224689999999996333221 235666655 6776 33 1222222211111 1345
Q ss_pred CCceEEEEeccc-CHHHHHHHhhcccCCCCcEEEecCeecce--eEEEecCCccchH---HHHHHHHHHHH-hhCCCCCE
Q psy2470 349 TQLKLIISSATV-DAEEICQFYNISASSNATILSVKGHLYPV--SVYYSNDPVVNYV---QGVVDTAIKIH-ESMPVGDI 421 (858)
Q Consensus 349 ~~~q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v--~~~~~~~~~~~~~---~~~~~~l~~i~-~~~~~g~i 421 (858)
++.|+|.+|||+ |.+.+++|++..+ ......+.....|| +.++......... ......+.... .....+++
T Consensus 243 ~~~riI~LSATl~N~~dvA~wL~~~~--~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 320 (1724)
T 4f92_B 243 EDVRLIGLSATLPNYEDVATFLRVDP--AKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQV 320 (1724)
T ss_dssp CCCEEEEEECSCTTHHHHHHHTTCCH--HHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCE
T ss_pred CCCcEEEEecccCCHHHHHHHhCCCC--CCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcE
Confidence 678999999999 8999999997311 01233444333344 4333322222111 11122222322 22346789
Q ss_pred EEEcCCHHHHHHHHHHHHHhccCCC------------------------------CcceEEEeccCCCCHHHHHHhcCCC
Q psy2470 422 LAFVIGLEQIEHIIGILKQYHNQRE------------------------------DLKLLILPMHGSLPNNEQIKVFRPT 471 (858)
Q Consensus 422 LVFl~t~~~i~~l~~~L~~~~~~~~------------------------------~~~~~v~~LHg~l~q~~r~~v~~~f 471 (858)
|||++|+++++.+++.|.+.....+ .-...+..+||+|++++|..+.+.|
T Consensus 321 LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F 400 (1724)
T 4f92_B 321 LVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLF 400 (1724)
T ss_dssp EEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHH
Confidence 9999999999999998874210000 0012367789999999999999999
Q ss_pred CCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh--
Q psy2470 472 PRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN-- 546 (858)
Q Consensus 472 ~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~-- 546 (858)
++|..+|||||+++|.|||+|.+++||.. ...||+..|. ..|+|..+|.||+|||||.|- |.+|-+.
T Consensus 401 ~~G~i~vlvaTsTLa~GVNlPa~~vVI~~----~~~~~~~~~~----~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~ 472 (1724)
T 4f92_B 401 ADKHIQVLVSTATLAWGVNLPAHTVIIKG----TQVYSPEKGR----WTELGALDILQMLGRAGRPQYDTKGEGILITSH 472 (1724)
T ss_dssp HTTCCCEEEECHHHHHHSCCCBSEEEEEC----CEEEETTTTE----EEECCHHHHHHHHTTBSCTTTCSCEEEEEEEES
T ss_pred HCCCCeEEEEcchhHhhCCCCCceEEEeC----CEEecCcCCC----cccCCHHHHHHhhhhccCCCCCCccEEEEEecc
Confidence 99999999999999999999999999962 2458877662 368999999999999999883 9999887
Q ss_pred ---hhHhhhhhhhhccCCCCCCCCCCCccccCcccchhhh----------------HHHHHHHhhhHhHhHhh---hCCC
Q psy2470 547 ---FMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFF----------------SFFQYLLEAGWCYDTKL---IGIT 604 (858)
Q Consensus 547 ---~~~~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~----------------~~~~~l~~~~~~l~~~~---~~~~ 604 (858)
..|..+-. . ++.+++.+. ..+. +..+||..+-...++.. .+-.
T Consensus 473 ~~~~~~~~ll~-----~--------~~pieS~l~--~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~ 537 (1724)
T 4f92_B 473 GELQYYLSLLN-----Q--------QLPIESQMV--SKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGI 537 (1724)
T ss_dssp TTCCHHHHHTT-----T--------CSCCCCCTT--TTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTC
T ss_pred hhHHHHHHHHc-----C--------CCcchhhcc--ccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhcc
Confidence 23344333 2 333444443 1222 33334433322111111 0000
Q ss_pred CC---cccccCCc----hHHHHHHHHHhcCCeeeeeeecCC-CCcccCccceecchhhHHHhcccCcccccc
Q psy2470 605 EP---RRISVTSL----ANRVSEELRTTLGHTVGYTIRFDD-CTTEDVTKIKYMTEGILMREMMTDPLLRKY 668 (858)
Q Consensus 605 ~~---~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~-~~~~~~T~i~~~~~G~lls~L~~dp~l~~~ 668 (858)
.. ...+.+.. .+..++..|.+.|.+ ..+. ......| ++|+.++++|++|...+.
T Consensus 538 ~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li-----~~d~~~~~~~~T-----~lGr~~s~~yi~~~t~~~ 599 (1724)
T 4f92_B 538 SHDDLKGDPLLDQRRLDLVHTAALMLDKNNLV-----KYDKKTGNFQVT-----ELGRIASHYYITNDTVQT 599 (1724)
T ss_dssp CHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSE-----EECTTTCBEEEC-----HHHHHHHHTTCCHHHHHH
T ss_pred CccccccchHHHHHHHHHHHHHHHHHHHCCCe-----eeecCCCccccc-----hHHHHHHHhcCCHHHHHH
Confidence 00 00011111 356788889999988 4322 2223345 999999999999988877
No 38
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.95 E-value=1.7e-28 Score=297.32 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=64.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEec--------cCCCCHHHHHHhcCCCCC-CcEEEEEecCcccc
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPM--------HGSLPNNEQIKVFRPTPR-AMRKIVIATNIAET 487 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~L--------Hg~l~q~~r~~v~~~f~~-g~~kVlvATdvAer 487 (858)
+.+++|||++++++++.+++.|+..... .++.+..+ ||+|++++|.++++.|++ |.++|||||++|++
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~---~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~ 473 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKL---SFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADE 473 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTC---CSCCEEC-----------------------------CCSCSEEEESSCC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCc---cccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhc
Confidence 5689999999999999999999975111 12677777 569999999999999998 99999999999999
Q ss_pred cCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 488 SITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 488 gldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|||||+|++||+ || .|.+.++|.||+|| ||.++|.||.++
T Consensus 474 GiDip~v~~VI~--------~d----------~p~s~~~~~Qr~GR-GR~~~g~~~~l~ 513 (696)
T 2ykg_A 474 GIDIAQCNLVIL--------YE----------YVGNVIKMIQTRGR-GRARGSKCFLLT 513 (696)
T ss_dssp C---CCCSEEEE--------ES----------CC--CCCC----------CCCEEEEEE
T ss_pred CCcCccCCEEEE--------eC----------CCCCHHHHHHhhcc-CcCCCceEEEEe
Confidence 999999999999 77 56777889999999 999889999999
No 39
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.95 E-value=1.7e-28 Score=293.40 Aligned_cols=266 Identities=17% Similarity=0.091 Sum_probs=176.8
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-+.|+|||||| .++.+|.+.... . ...+++|++|||+||.|+++++. +.. +++.
T Consensus 245 lv~apTGSGKT-----l~~ll~il~~l~------~-----~~~~~lilaPTr~La~Q~~~~l~---~~~-------i~~~ 298 (673)
T 2wv9_A 245 VLDLHPGAGKT-----RRILPQIIKDAI------Q-----KRLRTAVLAPTRVVAAEMAEALR---GLP-------VRYL 298 (673)
T ss_dssp EECCCTTTTTT-----TTHHHHHHHHHH------H-----TTCCEEEEESSHHHHHHHHHHTT---TSC-------CEEC
T ss_pred EEEeCCCCCHH-----HHHHHHHHHHHH------h-----CCCcEEEEccHHHHHHHHHHHHh---cCC-------eeee
Confidence 35799999999 444444332111 1 11368999999999999988763 111 3332
Q ss_pred EeccceeecceeEEEeecCcccc-C---------CCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCC
Q psy2470 285 FRKGRMKILVSKIFKMSQGKPSD-S---------GVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKR 348 (858)
Q Consensus 285 vr~~~~~~~~t~I~v~TpGrLl~-~---------~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~ 348 (858)
.+... .++|||++++ + ..+..+.++.++ ++ + ...+..+++++.+. .+
T Consensus 299 ~~~l~--------~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~-~--~~~~~~~~~l~~~~------~~ 361 (673)
T 2wv9_A 299 TPAVQ--------REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFT-D--PASIAARGYIATRV------EA 361 (673)
T ss_dssp CC-----------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCC-C--HHHHHHHHHHHHHH------HT
T ss_pred ccccc--------ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCccc-C--ccHHHHHHHHHHhc------cc
Confidence 22111 1567777665 2 223356777766 33 2 00234466666554 13
Q ss_pred CCceEEEEecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCH
Q psy2470 349 TQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGL 428 (858)
Q Consensus 349 ~~~q~il~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~ 428 (858)
++.|+++||||+... +.++.. .+.++..+... +........ +. .+.. ..+++||||+++
T Consensus 362 ~~~~vl~~SAT~~~~-i~~~~~----~~~~i~~v~~~-------~~~~~~~~~----l~----~l~~-~~~~~lVF~~s~ 420 (673)
T 2wv9_A 362 GEAAAIFMTATPPGT-SDPFPD----TNSPVHDVSSE-------IPDRAWSSG----FE----WITD-YAGKTVWFVASV 420 (673)
T ss_dssp TSCEEEEECSSCTTC-CCSSCC----CSSCEEEEECC-------CCSSCCSSC----CH----HHHS-CCSCEEEECSSH
T ss_pred cCCcEEEEcCCCChh-hhhhcc----cCCceEEEeee-------cCHHHHHHH----HH----HHHh-CCCCEEEEECCH
Confidence 678999999999432 111111 12333333221 001111111 11 1122 478999999999
Q ss_pred HHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCcccee-
Q psy2470 429 EQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARW- 507 (858)
Q Consensus 429 ~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~- 507 (858)
++++.+++.|++. ++.+..+|| ++|.++++.|++|+.+||||||++|+||||| |++|||+|....+.
T Consensus 421 ~~~e~la~~L~~~-------g~~v~~lHg----~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~v 488 (673)
T 2wv9_A 421 KMSNEIAQCLQRA-------GKRVIQLNR----KSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTI 488 (673)
T ss_dssp HHHHHHHHHHHTT-------TCCEEEECS----SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEE
T ss_pred HHHHHHHHHHHhC-------CCeEEEeCh----HHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCccccee
Confidence 9999999999976 788999999 4889999999999999999999999999999 99999999776654
Q ss_pred -ccCCCCCCcceeeecCHhhHHHhhcccCCC-C-CceEEEeh
Q psy2470 508 -FNPNTLTNSLVVVPISKASAVQRAGRAGRV-R-SGHVYRKN 546 (858)
Q Consensus 508 -yd~~~g~~~l~~~pis~~~~~qR~GRaGR~-g-~G~~~rL~ 546 (858)
||...++..+...|.|.++|.||+|||||. | +|.||.++
T Consensus 489 i~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 489 LDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp ECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred eecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 565444444445899999999999999999 4 49999986
No 40
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.94 E-value=2.7e-27 Score=278.27 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=54.9
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhccCC-----CCcceEEEeccCCCCHHHHHHhcCCCCC-CcEEEEEecCcccccC
Q psy2470 416 MPVGDILAFVIGLEQIEHIIGILKQYHNQR-----EDLKLLILPMHGSLPNNEQIKVFRPTPR-AMRKIVIATNIAETSI 489 (858)
Q Consensus 416 ~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~-----~~~~~~v~~LHg~l~q~~r~~v~~~f~~-g~~kVlvATdvAergl 489 (858)
.+.+++|||+++++.++.+++.|++..... ...|.....+||+|++++|.++++.|++ |..+||||||++++||
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gi 467 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 467 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCC
Confidence 557899999999999999999997531110 0124556677899999999999999999 9999999999999999
Q ss_pred CCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 490 TIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 490 dIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|+|+|++||+ || .|-+...|+||+|| ||.++|.||.|+
T Consensus 468 Dip~v~~VI~--------~d----------~p~s~~~~~Qr~GR-gR~~~g~~~~l~ 505 (556)
T 4a2p_A 468 DIVQCNLVVL--------YE----------YSGNVTKMIQVRGR-GRAAGSKCILVT 505 (556)
T ss_dssp -----CEEEE--------ET----------CCSCHHHHHHC---------CCEEEEE
T ss_pred CchhCCEEEE--------eC----------CCCCHHHHHHhcCC-CCCCCceEEEEE
Confidence 9999999999 87 67899999999999 999889999999
No 41
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.94 E-value=3.2e-27 Score=280.18 Aligned_cols=102 Identities=19% Similarity=0.145 Sum_probs=93.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCe---
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGI--- 494 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V--- 494 (858)
+.++|||++|++.++.+++.|++. |+.+..|||+..+.++..+.+.|++| +|+||||+|+||+||+.+
T Consensus 460 gqpvLVft~Sie~sE~Ls~~L~~~-------Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~ 530 (922)
T 1nkt_A 460 GQPVLIGTTSVERSEYLSRQFTKR-------RIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNV 530 (922)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHT-------TCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHC-------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCH
Confidence 457999999999999999999987 89999999999999998888999988 599999999999999975
Q ss_pred -------------------------------------------------eEEEcCCCccceeccCCCCCCcceeeecCHh
Q psy2470 495 -------------------------------------------------VYVIDPGFVKARWFNPNTLTNSLVVVPISKA 525 (858)
Q Consensus 495 -------------------------------------------------~~VId~g~~k~~~yd~~~g~~~l~~~pis~~ 525 (858)
.|||| |+ .|.|+.
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~--------te----------~pes~r 592 (922)
T 1nkt_A 531 DFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLG--------TE----------RHESRR 592 (922)
T ss_dssp HHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEE--------CS----------CCSSHH
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEe--------cc----------CCCCHH
Confidence 69999 66 788999
Q ss_pred hHHHhhcccCCCCC-ceEEEeh
Q psy2470 526 SAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 526 ~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
.|.||+|||||.|. |.+..+.
T Consensus 593 iy~qr~GRTGRqGdpG~s~ffl 614 (922)
T 1nkt_A 593 IDNQLRGRSGRQGDPGESRFYL 614 (922)
T ss_dssp HHHHHHHTSSGGGCCEEEEEEE
T ss_pred HHHHHhcccccCCCCeeEEEEe
Confidence 99999999999997 9988776
No 42
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.93 E-value=2.3e-26 Score=269.95 Aligned_cols=112 Identities=18% Similarity=0.150 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhccCC-----CCcceEEEeccCCCCHHHHHHhcCCCCC-CcEEEEEecCcccccC
Q psy2470 416 MPVGDILAFVIGLEQIEHIIGILKQYHNQR-----EDLKLLILPMHGSLPNNEQIKVFRPTPR-AMRKIVIATNIAETSI 489 (858)
Q Consensus 416 ~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~-----~~~~~~v~~LHg~l~q~~r~~v~~~f~~-g~~kVlvATdvAergl 489 (858)
.+.+++|||+++++.++.+++.|+...... ...|.....+||+|++++|.++++.|++ |..+||||||++++||
T Consensus 387 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gl 466 (555)
T 3tbk_A 387 KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGI 466 (555)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCE
T ss_pred CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCC
Confidence 456899999999999999999998642100 0113455566789999999999999999 9999999999999999
Q ss_pred CCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 490 TIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 490 dIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|+|+|++||+ || .|-+..+|+||+|| ||...|.||.|+
T Consensus 467 Dlp~v~~VI~--------~d----------~p~s~~~~~Qr~GR-gR~~~g~~~~l~ 504 (555)
T 3tbk_A 467 DIAECNLVIL--------YE----------YVGNVIKMIQTRGR-GRARDSKCFLLT 504 (555)
T ss_dssp ETTSCSEEEE--------ES----------CCSSCCCEECSSCC-CTTTSCEEEEEE
T ss_pred ccccCCEEEE--------eC----------CCCCHHHHHHhcCc-CcCCCceEEEEE
Confidence 9999999999 77 56677788899999 999889999999
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.93 E-value=2.6e-27 Score=297.31 Aligned_cols=252 Identities=13% Similarity=0.047 Sum_probs=156.5
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-+.|+|||||| .++.+|... .+ . ...++||++|||+||.|+++++.+ ++ ..+.. ++..
T Consensus 97 lv~ApTGSGKT-----l~~l~~il~-~~------~-----~~~~~Lil~PtreLa~Q~~~~l~~-l~-~~~i~---v~~l 154 (1104)
T 4ddu_A 97 TMVAPTGVGKT-----TFGMMTALW-LA------R-----KGKKSALVFPTVTLVKQTLERLQK-LA-DEKVK---IFGF 154 (1104)
T ss_dssp EECCSTTCCHH-----HHHHHHHHH-HH------T-----TTCCEEEEESSHHHHHHHHHHHHT-TS-CTTSC---EEEE
T ss_pred EEEeCCCCcHH-----HHHHHHHHH-HH------h-----cCCeEEEEechHHHHHHHHHHHHH-hh-CCCCe---EEEE
Confidence 35799999999 333333221 11 1 123589999999999999998865 55 44545 5544
Q ss_pred Eeccce---------ee-cceeEEEeecCccccCCCccCCCcccEE------EecCCCCCchhh---hhH----HHHHHH
Q psy2470 285 FRKGRM---------KI-LVSKIFKMSQGKPSDSGVEPISQSYLVE------LSILAPGGQDVI---GED----MKAFAE 341 (858)
Q Consensus 285 vr~~~~---------~~-~~t~I~v~TpGrLl~~~~~~~L~~~~vl------R~l~~~~~~d~l---l~~----lk~~~~ 341 (858)
.++.+. .. ..++|+|+|||+|++......+.++.+| .......+.|-+ +|+ ++.+..
T Consensus 155 ~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~ 234 (1104)
T 4ddu_A 155 YSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFS 234 (1104)
T ss_dssp CTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHH
Confidence 443332 11 2389999999999884333445555555 111100000222 222 222221
Q ss_pred Hhc-----ccCC--CCceEEEEecccCH---H-HHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHH
Q psy2470 342 QLK-----PLKR--TQLKLIISSATVDA---E-EICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAI 410 (858)
Q Consensus 342 ~l~-----~~~~--~~~q~il~SAT~~~---~-~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~ 410 (858)
.+. ...+ ++.|+++||||+.. . .+...+. ...+.........+...|... +.... +.
T Consensus 235 ~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l-----~i~v~~~~~~~~~i~~~~~~~---~k~~~----L~ 302 (1104)
T 4ddu_A 235 TIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLL-----NFTVGRLVSVARNITHVRISS---RSKEK----LV 302 (1104)
T ss_dssp HHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHT-----CCCCCBCCCCCCCEEEEEESC---CCHHH----HH
T ss_pred hcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcce-----eEEeccCCCCcCCceeEEEec---CHHHH----HH
Confidence 111 0111 67899999999522 1 2223222 111111111123455555543 22222 23
Q ss_pred HHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEE-eccCCCCHHHHHHhcCCCCCCcEEEEEe----cCcc
Q psy2470 411 KIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLIL-PMHGSLPNNEQIKVFRPTPRAMRKIVIA----TNIA 485 (858)
Q Consensus 411 ~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~-~LHg~l~q~~r~~v~~~f~~g~~kVlvA----TdvA 485 (858)
+++.. .++++||||++++.++.+++.|+.. ++.+. .+||+ |.+ ++.|++|+.+|||| ||++
T Consensus 303 ~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~-------g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~Tdvl 368 (1104)
T 4ddu_A 303 ELLEI-FRDGILIFAQTEEEGKELYEYLKRF-------KFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKL 368 (1104)
T ss_dssp HHHHH-HCSSEEEEESSSHHHHHHHHHHHHT-------TCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHH
T ss_pred HHHHh-cCCCEEEEECcHHHHHHHHHHHHhC-------CCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCee
Confidence 33333 2489999999999999999999987 88898 99992 555 99999999999999 9999
Q ss_pred cccCCCCC-eeEEEcCCCcc
Q psy2470 486 ETSITIPG-IVYVIDPGFVK 504 (858)
Q Consensus 486 ergldIp~-V~~VId~g~~k 504 (858)
+||||||+ |++|||+|+|+
T Consensus 369 arGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 369 TRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp CCSCCCTTTCCEEEEESCCE
T ss_pred EecCcCCCCCCEEEEECCCC
Confidence 99999999 99999999998
No 44
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.93 E-value=5.5e-26 Score=279.25 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=60.9
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhccCC-----CCcceEEEeccCCCCHHHHHHhcCCCCC-CcEEEEEecCcccccC
Q psy2470 416 MPVGDILAFVIGLEQIEHIIGILKQYHNQR-----EDLKLLILPMHGSLPNNEQIKVFRPTPR-AMRKIVIATNIAETSI 489 (858)
Q Consensus 416 ~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~-----~~~~~~v~~LHg~l~q~~r~~v~~~f~~-g~~kVlvATdvAergl 489 (858)
.+.+++|||+++++.++.+++.|++..... ...|..+..+||+|++++|.++++.|++ |..+|||||+++++||
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GI 708 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCC
Confidence 556899999999999999999998631110 0125566778999999999999999999 9999999999999999
Q ss_pred CCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 490 TIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 490 dIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|+|+|++||+ || .|-|...|+||+|| ||..+|.||+|+
T Consensus 709 Dlp~v~~VI~--------yd----------~p~s~~~~iQr~GR-GR~~~g~~i~l~ 746 (797)
T 4a2q_A 709 DIVQCNLVVL--------YE----------YSGNVTKMIQVRGR-GRAAGSKCILVT 746 (797)
T ss_dssp --CCCSEEEE--------ES----------CCSCHHHHHTC--------CCCEEEEE
T ss_pred CchhCCEEEE--------eC----------CCCCHHHHHHhcCC-CCCCCceEEEEE
Confidence 9999999999 87 67889999999999 999889999999
No 45
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.92 E-value=4.4e-26 Score=261.56 Aligned_cols=106 Identities=23% Similarity=0.305 Sum_probs=97.2
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccC--------CCCHHHHHHhcCCCCCCcEEEEEecCcccc
Q psy2470 416 MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHG--------SLPNNEQIKVFRPTPRAMRKIVIATNIAET 487 (858)
Q Consensus 416 ~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg--------~l~q~~r~~v~~~f~~g~~kVlvATdvAer 487 (858)
.+.+++|||+++.+.++.+++.|+.. ++.+..+|| ++++++|.++++.|++|..+|||||+++++
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~ 431 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVKD-------GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEE 431 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHT-------TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGG
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHHc-------CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCcccc
Confidence 56789999999999999999999987 788999999 999999999999999999999999999999
Q ss_pred cCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 488 SITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 488 gldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|||+|++++||+ || .|-+.+.|.||+||+||.|+|.||+|+
T Consensus 432 Gldl~~~~~Vi~--------~d----------~~~~~~~~~Qr~GR~~R~g~g~~~~l~ 472 (494)
T 1wp9_A 432 GLDVPEVDLVVF--------YE----------PVPSAIRSIQRRGRTGRHMPGRVIILM 472 (494)
T ss_dssp GGGSTTCCEEEE--------SS----------CCHHHHHHHHHHTTSCSCCCSEEEEEE
T ss_pred CCCchhCCEEEE--------eC----------CCCCHHHHHHHHhhccCCCCceEEEEE
Confidence 999999999999 66 567888999999999999999999999
No 46
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.92 E-value=1.3e-26 Score=291.04 Aligned_cols=247 Identities=11% Similarity=-0.051 Sum_probs=147.1
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHh---CC----cCccEe
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEM---GC----RMDFEY 278 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~---g~----~~g~~~ 278 (858)
+.|+|||||| + +.+|.+..... ...++||++|||+||.|+++++.+.. +. .++..+
T Consensus 76 v~apTGSGKT-----l-~~lp~l~~~~~-----------~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~ 138 (1054)
T 1gku_B 76 ATAPTGVGKT-----S-FGLAMSLFLAL-----------KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYH 138 (1054)
T ss_dssp CCCCBTSCSH-----H-HHHHHHHHHHT-----------TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECC
T ss_pred EEcCCCCCHH-----H-HHHHHHHHHhh-----------cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEe
Confidence 4699999999 4 55554442211 12368999999999999988775433 33 333331
Q ss_pred eeeeEEEe--ccceeecceeEEEeecCccccCCCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhc------
Q psy2470 279 ISRGYMFR--KGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLK------ 344 (858)
Q Consensus 279 ~~vG~~vr--~~~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~------ 344 (858)
|+.....+ ....... ++|+|+|||+|++.... |+++.++ ++++ . ...+...+. .+.
T Consensus 139 Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~--L~~l~~lViDEah~~l~----~--~~~~~~i~~-~lgf~~~~~ 208 (1054)
T 1gku_B 139 GRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE--LGHFDFIFVDDVDAILK----A--SKNVDKLLH-LLGFHYDLK 208 (1054)
T ss_dssp SSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT--SCCCSEEEESCHHHHHT----S--THHHHHHHH-HTTEEEETT
T ss_pred CCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH--hccCCEEEEeChhhhhh----c--cccHHHHHH-HhCcchhhh
Confidence 11111000 0111123 89999999999993333 5666655 4444 1 111111111 110
Q ss_pred -ccCCCCceEEEEecccCH-HHHHHHhhcccCCCCcEEEecCee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCC
Q psy2470 345 -PLKRTQLKLIISSATVDA-EEICQFYNISASSNATILSVKGHL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVG 419 (858)
Q Consensus 345 -~~~~~~~q~il~SAT~~~-~~~~~~~~~~~~~~~~~i~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g 419 (858)
...++..|+++||||+.. ..+...+.. ++..+.+.... .++.+.+...... ..+..++... .+
T Consensus 209 ~~~~~~~~q~~l~SAT~t~~~~~~~~~~~----~~~~i~v~~~~~~~~~i~~~~~~~~k~-------~~L~~ll~~~-~~ 276 (1054)
T 1gku_B 209 TKSWVGEARGCLMVSTATAKKGKKAELFR----QLLNFDIGSSRITVRNVEDVAVNDESI-------STLSSILEKL-GT 276 (1054)
T ss_dssp TTEEEECCSSEEEECCCCSCCCTTHHHHH----HHHCCCCSCCEECCCCEEEEEESCCCT-------TTTHHHHTTS-CS
T ss_pred hhhcccCCceEEEEecCCCchhHHHHHhh----cceEEEccCcccCcCCceEEEechhHH-------HHHHHHHhhc-CC
Confidence 012356789999999932 322222221 11122222222 2355555532222 2233444433 57
Q ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEe----cCcccccCCCCCe-
Q psy2470 420 DILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIA----TNIAETSITIPGI- 494 (858)
Q Consensus 420 ~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvA----TdvAergldIp~V- 494 (858)
++||||+++++++.+++.|+.. +.+..+||++. ++++.|++|+.+|||| ||++++|||||+|
T Consensus 277 ~~LVF~~t~~~a~~l~~~L~~~--------~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI 343 (1054)
T 1gku_B 277 GGIIYARTGEEAEEIYESLKNK--------FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERI 343 (1054)
T ss_dssp CEEEEESSHHHHHHHHHTTTTS--------SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTC
T ss_pred CEEEEEcCHHHHHHHHHHHhhc--------cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcc
Confidence 8999999999999999988642 56899999983 6677899999999999 9999999999995
Q ss_pred eEEEcCCCcc
Q psy2470 495 VYVIDPGFVK 504 (858)
Q Consensus 495 ~~VId~g~~k 504 (858)
++|||+|+|+
T Consensus 344 ~~VI~~~~P~ 353 (1054)
T 1gku_B 344 RFAVFVGCPS 353 (1054)
T ss_dssp CEEEEESCCE
T ss_pred cEEEEeCCCc
Confidence 9999999984
No 47
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.92 E-value=7e-25 Score=272.85 Aligned_cols=112 Identities=15% Similarity=0.111 Sum_probs=61.8
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhccCCC-----CcceEEEeccCCCCHHHHHHhcCCCCC-CcEEEEEecCcccccC
Q psy2470 416 MPVGDILAFVIGLEQIEHIIGILKQYHNQRE-----DLKLLILPMHGSLPNNEQIKVFRPTPR-AMRKIVIATNIAETSI 489 (858)
Q Consensus 416 ~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~-----~~~~~v~~LHg~l~q~~r~~v~~~f~~-g~~kVlvATdvAergl 489 (858)
.+.+++|||+++++.++.+++.|++.....+ ..|..+..+||+|++.+|.++++.|++ |..+|||||+++++||
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGI 708 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCC
Confidence 3468999999999999999999986421110 125556677999999999999999999 9999999999999999
Q ss_pred CCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 490 TIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 490 dIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|||+|++||+ || .|-|..+|+||+|| ||.+.|.||.|+
T Consensus 709 Dlp~v~~VI~--------yD----------~p~s~~~~iQr~GR-GR~~~g~vi~Li 746 (936)
T 4a2w_A 709 DIVQCNLVVL--------YE----------YSGNVTKMIQVRGR-GRAAGSKCILVT 746 (936)
T ss_dssp -CCCCSEEEE--------ES----------CCSCSHHHHCC--------CCCEEEEE
T ss_pred cchhCCEEEE--------eC----------CCCCHHHHHHhcCC-CCCCCCEEEEEE
Confidence 9999999999 87 57788999999999 999889999998
No 48
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.92 E-value=6.5e-26 Score=274.75 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=88.2
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCC--------CCHHHHHHhcCCCCCCcEEEEEecCcccccC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGS--------LPNNEQIKVFRPTPRAMRKIVIATNIAETSI 489 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~--------l~q~~r~~v~~~f~~g~~kVlvATdvAergl 489 (858)
.+++|||+++++.++.+++.|+....+. ..|+.+..+||+ |++++|.++++.|++|..+|||||+++++||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~-~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GI 478 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFA-EVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGL 478 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTS
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCcccc-ccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Confidence 6899999999999999999998542111 237899999999 9999999999999999999999999999999
Q ss_pred CCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 490 TIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 490 dIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|+|+|++||+ || .|-|.++|.||+|||||.| .++.++
T Consensus 479 Dip~v~~VI~--------~d----------~p~s~~~~~Qr~GRArr~g--~~~~l~ 515 (699)
T 4gl2_A 479 DIKECNIVIR--------YG----------LVTNEIAMVQARGRARADE--STYVLV 515 (699)
T ss_dssp CCCSCCCCEE--------ES----------CCCCHHHHHHHHTTSCSSS--CEEEEE
T ss_pred ccccCCEEEE--------eC----------CCCCHHHHHHHcCCCCCCC--ceEEEE
Confidence 9999999999 87 6788999999999988765 444444
No 49
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.92 E-value=8.1e-25 Score=276.31 Aligned_cols=275 Identities=14% Similarity=0.088 Sum_probs=185.8
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-+.|+||||||.+++++|+... .. | .+++|++||++||.|.++++.+.++ ..+.. ++..
T Consensus 628 ll~~~TGsGKT~val~aa~~~~------------~~--g---~~vlvlvPt~~La~Q~~~~~~~~~~-~~~i~---v~~l 686 (1151)
T 2eyq_A 628 LVCGDVGFGKTEVAMRAAFLAV------------DN--H---KQVAVLVPTTLLAQQHYDNFRDRFA-NWPVR---IEMI 686 (1151)
T ss_dssp EEECCCCTTTHHHHHHHHHHHH------------TT--T---CEEEEECSSHHHHHHHHHHHHHHST-TTTCC---EEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHH------------Hh--C---CeEEEEechHHHHHHHHHHHHHHhh-cCCCe---EEEE
Confidence 4568999999977777666532 11 1 2689999999999999999876654 22333 4433
Q ss_pred Eecccee----------ecceeEEEeecCccccCCCccCCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCC
Q psy2470 285 FRKGRMK----------ILVSKIFKMSQGKPSDSGVEPISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRT 349 (858)
Q Consensus 285 vr~~~~~----------~~~t~I~v~TpGrLl~~~~~~~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~ 349 (858)
.++.... ....+|+|+||+.|.. +..+.++.+| ..+. ....+.+. ..++
T Consensus 687 ~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~---~~~~~~l~lvIiDEaH~~g--------~~~~~~l~-----~l~~ 750 (1151)
T 2eyq_A 687 SRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS---DVKFKDLGLLIVDEEHRFG--------VRHKERIK-----AMRA 750 (1151)
T ss_dssp STTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS---CCCCSSEEEEEEESGGGSC--------HHHHHHHH-----HHHT
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC---CccccccceEEEechHhcC--------hHHHHHHH-----HhcC
Confidence 3322211 1247999999987744 2334555544 1222 22222222 2245
Q ss_pred CceEEEEecccCHHHHHHHhhcccCCCCcEEEe-cCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCH
Q psy2470 350 QLKLIISSATVDAEEICQFYNISASSNATILSV-KGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGL 428 (858)
Q Consensus 350 ~~q~il~SAT~~~~~~~~~~~~~~~~~~~~i~v-~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~ 428 (858)
+.++++||||+....+...+... .+..++.. +....++..++..... ......+...+ ..+++++||+++.
T Consensus 751 ~~~vl~lSATp~p~~l~~~~~~~--~~~~~i~~~~~~r~~i~~~~~~~~~----~~i~~~il~~l--~~g~qvlvf~~~v 822 (1151)
T 2eyq_A 751 NVDILTLTATPIPRTLNMAMSGM--RDLSIIATPPARRLAVKTFVREYDS----MVVREAILREI--LRGGQVYYLYNDV 822 (1151)
T ss_dssp TSEEEEEESSCCCHHHHHHHTTT--SEEEECCCCCCBCBCEEEEEEECCH----HHHHHHHHHHH--TTTCEEEEECCCS
T ss_pred CCCEEEEcCCCChhhHHHHHhcC--CCceEEecCCCCccccEEEEecCCH----HHHHHHHHHHH--hcCCeEEEEECCH
Confidence 78999999998655554433310 01112211 1223455555443221 12222233222 2468999999999
Q ss_pred HHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceec
Q psy2470 429 EQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWF 508 (858)
Q Consensus 429 ~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~y 508 (858)
++++.+++.|++. .+++.+..+||+|++++|.++++.|++|+.+|||||+++++|||||++++||. +
T Consensus 823 ~~~~~l~~~L~~~-----~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi--------~ 889 (1151)
T 2eyq_A 823 ENIQKAAERLAEL-----VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII--------E 889 (1151)
T ss_dssp SCHHHHHHHHHHH-----CTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE--------T
T ss_pred HHHHHHHHHHHHh-----CCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEE--------e
Confidence 9999999999976 24788999999999999999999999999999999999999999999999997 4
Q ss_pred cCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 509 NPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 509 d~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
++. +-+.++|.||+||+||.|. |.||.++
T Consensus 890 ~~~---------~~~l~~l~Qr~GRvgR~g~~g~~~ll~ 919 (1151)
T 2eyq_A 890 RAD---------HFGLAQLHQLRGRVGRSHHQAYAWLLT 919 (1151)
T ss_dssp TTT---------SSCHHHHHHHHTTCCBTTBCEEEEEEE
T ss_pred CCC---------CCCHHHHHHHHhccCcCCCceEEEEEE
Confidence 421 2345789999999999986 9999988
No 50
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.91 E-value=7.3e-26 Score=273.85 Aligned_cols=279 Identities=14% Similarity=0.069 Sum_probs=174.3
Q ss_pred cchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeee
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRG 282 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG 282 (858)
..-+.|+||||||++++.+++.. . +. ..++++++||++||.|.++++.+.++ ..|.. ++
T Consensus 391 ~~Ll~a~TGSGKTlvall~il~~-----l-------~~-----g~qvlvlaPtr~La~Q~~~~l~~~~~-~~gi~---v~ 449 (780)
T 1gm5_A 391 NRLLQGDVGSGKTVVAQLAILDN-----Y-------EA-----GFQTAFMVPTSILAIQHYRRTVESFS-KFNIH---VA 449 (780)
T ss_dssp CCEEECCSSSSHHHHHHHHHHHH-----H-------HH-----TSCEEEECSCHHHHHHHHHHHHHHHT-CSSCC---EE
T ss_pred cEEEEcCCCCCHHHHHHHHHHHH-----H-------Hc-----CCeEEEEeCcHHHHHHHHHHHHHHhh-hcCce---EE
Confidence 34567999999994444433221 1 11 13689999999999999998876552 22333 33
Q ss_pred EEEeccce----------eecceeEEEeecCccccCCCccCCCcccEE--EecCCCCCchhhhhHHHHHHHHhcccCCCC
Q psy2470 283 YMFRKGRM----------KILVSKIFKMSQGKPSDSGVEPISQSYLVE--LSILAPGGQDVIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 283 ~~vr~~~~----------~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl--R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~ 350 (858)
...+.... ....++|+|+|||++.+ +..+.++.++ --.+ . ++.... ..+. ....+
T Consensus 450 ~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~---~~~~~~l~lVVIDEaH-----r--~g~~qr--~~l~-~~~~~ 516 (780)
T 1gm5_A 450 LLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE---DVHFKNLGLVIIDEQH-----R--FGVKQR--EALM-NKGKM 516 (780)
T ss_dssp ECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH---CCCCSCCCEEEEESCC-----C--C-------CCCC-SSSSC
T ss_pred EEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh---hhhccCCceEEecccc-----h--hhHHHH--HHHH-HhCCC
Confidence 22222111 11348999999998865 2234455444 1111 0 111110 0111 22346
Q ss_pred ceEEEEecccCHHHHHHHhhcccCCCCcEEEe---cCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCC
Q psy2470 351 LKLIISSATVDAEEICQFYNISASSNATILSV---KGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIG 427 (858)
Q Consensus 351 ~q~il~SAT~~~~~~~~~~~~~~~~~~~~i~v---~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t 427 (858)
.|+++||||...+.++..+.. +..+..+ +....|+..++.... ........+.+.. ...++++||||+
T Consensus 517 ~~vL~mSATp~p~tl~~~~~g----~~~~s~i~~~p~~r~~i~~~~~~~~---~~~~l~~~i~~~l--~~g~qvlVf~~~ 587 (780)
T 1gm5_A 517 VDTLVMSATPIPRSMALAFYG----DLDVTVIDEMPPGRKEVQTMLVPMD---RVNEVYEFVRQEV--MRGGQAFIVYPL 587 (780)
T ss_dssp CCEEEEESSCCCHHHHHHHTC----CSSCEEECCCCSSCCCCEECCCCSS---THHHHHHHHHHHT--TTSCCBCCBCCC
T ss_pred CCEEEEeCCCCHHHHHHHHhC----CcceeeeeccCCCCcceEEEEeccc---hHHHHHHHHHHHH--hcCCcEEEEecc
Confidence 899999999966666543321 2222222 222345554443322 2223333333322 236789999997
Q ss_pred HHH--------HHHHHHHHHH-hccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEE
Q psy2470 428 LEQ--------IEHIIGILKQ-YHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVI 498 (858)
Q Consensus 428 ~~~--------i~~l~~~L~~-~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VI 498 (858)
.++ ++.+++.|.+ . .+++.+..+||+|++++|.++++.|++|+.+|||||+++|+|||||++++||
T Consensus 588 ie~se~l~~~~a~~l~~~L~~~~-----~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VI 662 (780)
T 1gm5_A 588 IEESDKLNVKSAVEMYEYLSKEV-----FPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV 662 (780)
T ss_dssp C--------CHHHHHHHSGGGSC-----C---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHhhh-----cCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEE
Confidence 654 5556665554 2 2378899999999999999999999999999999999999999999999999
Q ss_pred cCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 499 DPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 499 d~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+ ||+.. .+.+++.||+||+||.|. |.||.++
T Consensus 663 i--------~d~~r---------~~l~~l~Qr~GRaGR~g~~g~~ill~ 694 (780)
T 1gm5_A 663 I--------ENPER---------FGLAQLHQLRGRVGRGGQEAYCFLVV 694 (780)
T ss_dssp B--------CSCSS---------SCTTHHHHHHHTSCCSSTTCEEECCC
T ss_pred E--------eCCCC---------CCHHHHHHHhcccCcCCCCCEEEEEE
Confidence 9 55321 245678899999999886 9999988
No 51
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.89 E-value=6.3e-24 Score=219.31 Aligned_cols=118 Identities=20% Similarity=0.325 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 404 GVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 404 ~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
.+...+.+++...+++++|||++++++++.+++.|.+. ++.+.++||+|++++|.++++.|++|.++||||||
T Consensus 17 ~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 17 GRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL-------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD 89 (212)
T ss_dssp SHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH-------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT
T ss_pred HHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc-------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC
Confidence 35566677776667899999999999999999999987 88999999999999999999999999999999999
Q ss_pred cccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 484 IAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 484 vAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+|++|+|||+|++||| || .|.+.++|.||+|||||.|. |.||.++
T Consensus 90 ~~~~Gidi~~v~~Vi~--------~~----------~p~~~~~~~qr~GR~gR~g~~g~~~~l~ 135 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVH--------YR----------LPDRAEAYQHRSGRTGRAGRGGRVVLLY 135 (212)
T ss_dssp TTTCSSSCCCBSEEEE--------SS----------CCSSHHHHHHHHTTBCCCC--BEEEEEE
T ss_pred hhhcCCCCccCcEEEE--------CC----------CCcCHHHHHHHhcccCCCCCCCeEEEEE
Confidence 9999999999999999 65 57889999999999999985 9999999
No 52
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.88 E-value=2.6e-23 Score=242.63 Aligned_cols=276 Identities=9% Similarity=-0.000 Sum_probs=172.6
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-+.|+||||||++++.++...- ..+ + .++||++||++|+.|..+++ +.++...+.. ++..
T Consensus 132 ll~~~tGsGKT~~~~~~~~~~~------------~~~--~--~~vlvl~P~~~L~~Q~~~~~-~~~~~~~~~~---v~~~ 191 (510)
T 2oca_A 132 ILNLPTSAGRSLIQALLARYYL------------ENY--E--GKILIIVPTTALTTQMADDF-VDYRLFSHAM---IKKI 191 (510)
T ss_dssp EEECCSTTTHHHHHHHHHHHHH------------HHC--S--SEEEEEESSHHHHHHHHHHH-HHTTSSCGGG---EEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHH------------hCC--C--CeEEEEECcHHHHHHHHHHH-HHhhcCCccc---eEEE
Confidence 4579999999955554433211 011 1 25899999999999999988 4444333333 3322
Q ss_pred Eeccce---eecceeEEEeecCccccCCCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 285 FRKGRM---KILVSKIFKMSQGKPSDSGVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 285 vr~~~~---~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
.++... .....+|+|+||+.|.+. ....+.++.+| +... ..+ ..+. ...++..++++
T Consensus 192 ~~~~~~~~~~~~~~~I~i~T~~~l~~~-~~~~~~~~~liIiDE~H~~~~--------~~~-~~il----~~~~~~~~~l~ 257 (510)
T 2oca_A 192 GGGASKDDKYKNDAPVVVGTWQTVVKQ-PKEWFSQFGMMMNDECHLATG--------KSI-SSII----SGLNNCMFKFG 257 (510)
T ss_dssp GGGCCTTGGGCTTCSEEEEEHHHHTTS-CGGGGGGEEEEEEETGGGCCH--------HHH-HHHG----GGCTTCCEEEE
T ss_pred ecCCccccccccCCcEEEEeHHHHhhc-hhhhhhcCCEEEEECCcCCCc--------ccH-HHHH----HhcccCcEEEE
Confidence 222221 124689999999998762 12345556555 3222 111 1221 14456779999
Q ss_pred EecccCH-----HHHHHHhhcccCCCCcEEEecCe-------ecceeEE--EecCCc--------cchHH---------H
Q psy2470 356 SSATVDA-----EEICQFYNISASSNATILSVKGH-------LYPVSVY--YSNDPV--------VNYVQ---------G 404 (858)
Q Consensus 356 ~SAT~~~-----~~~~~~~~~~~~~~~~~i~v~g~-------~~~v~~~--~~~~~~--------~~~~~---------~ 404 (858)
||||+.. ..+..+++ +.++.++.. ..+.... ....+. ..+.. .
T Consensus 258 lSATp~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (510)
T 2oca_A 258 LSGSLRDGKANIMQYVGMFG------EIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSK 331 (510)
T ss_dssp EESCGGGCSSCHHHHHHHHC------SEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHH
T ss_pred EEeCCCCCcccHHHhHHhhC------CeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHH
Confidence 9999921 12333443 222222211 1111111 111100 11111 1
Q ss_pred HHHHHHHHHhh---CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEe
Q psy2470 405 VVDTAIKIHES---MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIA 481 (858)
Q Consensus 405 ~~~~l~~i~~~---~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvA 481 (858)
....+.+++.. .....++||++ .++++.+++.|.+. +..+..+||++++++|.++++.|++|+.+||||
T Consensus 332 ~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~-------~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~ 403 (510)
T 2oca_A 332 RNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNE-------YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVA 403 (510)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTT-------CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHc-------CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEE
Confidence 12223333222 23445666666 88899999999865 447889999999999999999999999999999
Q ss_pred c-CcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCce-EEEeh
Q psy2470 482 T-NIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGH-VYRKN 546 (858)
Q Consensus 482 T-dvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~-~~rL~ 546 (858)
| +++++|+|+|++++||. |+ .|.+.++|.||+||+||.|.|. ++.+|
T Consensus 404 T~~~~~~GiDip~v~~vi~--------~~----------~~~s~~~~~Q~~GR~gR~g~~~~~v~i~ 452 (510)
T 2oca_A 404 SYGVFSTGISVKNLHHVVL--------AH----------GVKSKIIVLQTIGRVLRKHGSKTIATVW 452 (510)
T ss_dssp EHHHHHHSCCCCSEEEEEE--------SS----------CCCSCCHHHHHHHHHHTTTCCCCCCEEE
T ss_pred EcChhhcccccccCcEEEE--------eC----------CCCCHHHHHHHHhcccccCCCCceEEEE
Confidence 9 99999999999999999 65 4566789999999999999854 66666
No 53
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.87 E-value=2.5e-23 Score=225.56 Aligned_cols=129 Identities=19% Similarity=0.275 Sum_probs=109.5
Q ss_pred eeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhc
Q psy2470 389 VSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVF 468 (858)
Q Consensus 389 v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~ 468 (858)
++++|......+ +.+.+.+++....++++|||++|+++++.+++.|.+. ++.+.++||+|++++|.+++
T Consensus 3 v~~~~i~~~~~~----K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~-------g~~~~~lhg~l~~~~r~~~~ 71 (300)
T 3i32_A 3 YEEEAVPAPVRG----RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL-------GHPAQALHGDMSQGERERVM 71 (300)
T ss_dssp SEEEEEECCSSS----HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT-------TCCEEEECSCCCTHHHHHHH
T ss_pred eEEEEEECCHHH----HHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC-------CCCEEEEeCCCCHHHHHHHH
Confidence 455666555444 4455566666556899999999999999999999876 88999999999999999999
Q ss_pred CCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 469 RPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 469 ~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+.|++|+++||||||+|++|+|||+|++||| || .|.+.++|.||+|||||.|. |.||.++
T Consensus 72 ~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~--------~d----------~p~s~~~y~Qr~GRagR~g~~G~~i~l~ 132 (300)
T 3i32_A 72 GAFRQGEVRVLVATDVAARGLDIPQVDLVVH--------YR----------MPDRAEAYQHRSGRTGRAGRGGRVVLLY 132 (300)
T ss_dssp HHHHHTSCCEEEECSTTTCSTTCCCCSEEEE--------SS----------CCSSTTHHHHHHTCCC-----CEEEEEE
T ss_pred HHhhcCCceEEEEechhhcCccccceeEEEE--------cC----------CCCCHHHHHHHccCcCcCCCCceEEEEe
Confidence 9999999999999999999999999999999 55 57788999999999999985 9999999
No 54
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.86 E-value=5.7e-23 Score=237.42 Aligned_cols=261 Identities=11% Similarity=0.084 Sum_probs=172.0
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCc-CccEeeeee
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCR-MDFEYISRG 282 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~-~g~~~~~vG 282 (858)
.-+.|+||||||++++.++... ..++||++|+++|+.|.++++.+ +|.+ ++.. .|
T Consensus 111 ~ll~~~TGsGKT~~~l~~i~~~--------------------~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~~v~~~---~g 166 (472)
T 2fwr_A 111 GCIVLPTGSGKTHVAMAAINEL--------------------STPTLIVVPTLALAEQWKERLGI-FGEEYVGEF---SG 166 (472)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH--------------------CSCEEEEESSHHHHHHHHHHGGG-GCGGGEEEB---SS
T ss_pred EEEEeCCCCCHHHHHHHHHHHc--------------------CCCEEEEECCHHHHHHHHHHHHh-CCCcceEEE---CC
Confidence 4457999999995554443221 12579999999999999998876 6655 4433 11
Q ss_pred EEEeccceeecceeEEEeecCccccCCCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 283 YMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 283 ~~vr~~~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
. .....+|+|+|++++...... ...++.+| +..+ ..+ .+ +. ..-+..+++++
T Consensus 167 ----~---~~~~~~Ivv~T~~~l~~~~~~-~~~~~~liIvDEaH~~~~----~~~----~~-~~-----~~~~~~~~l~l 224 (472)
T 2fwr_A 167 ----R---IKELKPLTVSTYDSAYVNAEK-LGNRFMLLIFDEVHHLPA----ESY----VQ-IA-----QMSIAPFRLGL 224 (472)
T ss_dssp ----S---CBCCCSEEEEEHHHHHHTHHH-HTTTCSEEEEETGGGTTS----TTT----HH-HH-----HTCCCSEEEEE
T ss_pred ----C---cCCcCCEEEEEcHHHHHHHHH-hcCCCCEEEEECCcCCCC----hHH----HH-HH-----HhcCCCeEEEE
Confidence 1 112478999999999872211 11234444 4444 222 22 23 12245789999
Q ss_pred ecccC-----HHHHHHHhhcccCCCCcEEEec-----Ce-eccee--EEEecCC--------------------------
Q psy2470 357 SATVD-----AEEICQFYNISASSNATILSVK-----GH-LYPVS--VYYSNDP-------------------------- 397 (858)
Q Consensus 357 SAT~~-----~~~~~~~~~~~~~~~~~~i~v~-----g~-~~~v~--~~~~~~~-------------------------- 397 (858)
|||+. ...+..+++ +.+.... +. ..+.. .......
T Consensus 225 SATp~~~~~~~~~l~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (472)
T 2fwr_A 225 TATFEREDGRHEILKEVVG------GKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLR 298 (472)
T ss_dssp ESCCCCTTSGGGSHHHHTC------CEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTT
T ss_pred ecCccCCCCHHHHHHHHhC------CeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 99994 112444443 1111110 00 00000 0000000
Q ss_pred ----ccc--------------------------hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCC
Q psy2470 398 ----VVN--------------------------YVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQRED 447 (858)
Q Consensus 398 ----~~~--------------------------~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~ 447 (858)
... ....+...+.+++.....+++|||+++.+.++.+++.|.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-------- 370 (472)
T 2fwr_A 299 RAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-------- 370 (472)
T ss_dssp CCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------
T ss_pred chhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------
Confidence 000 001234556666666667899999999999999988773
Q ss_pred cceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhH
Q psy2470 448 LKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASA 527 (858)
Q Consensus 448 ~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~ 527 (858)
+..+||++++++|.++++.|++|..+|||||+++++|+|+|++++||+ || .|-+...|
T Consensus 371 ----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~--------~~----------~~~s~~~~ 428 (472)
T 2fwr_A 371 ----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI--------MS----------GSGSAREY 428 (472)
T ss_dssp ----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE--------EC----------CSSCCHHH
T ss_pred ----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEE--------EC----------CCCCHHHH
Confidence 335899999999999999999999999999999999999999999999 66 45678899
Q ss_pred HHhhcccCCCCCc----eEEEeh
Q psy2470 528 VQRAGRAGRVRSG----HVYRKN 546 (858)
Q Consensus 528 ~qR~GRaGR~g~G----~~~rL~ 546 (858)
.||+||+||.|+| .+|.++
T Consensus 429 ~Q~~GR~~R~g~~k~~~~i~~lv 451 (472)
T 2fwr_A 429 IQRLGRILRPSKGKKEAVLYELI 451 (472)
T ss_dssp HHHHHHSBCCCTTTCCEEEEEEE
T ss_pred HHHHhhccCCCCCCceEEEEEEE
Confidence 9999999999977 445555
No 55
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.85 E-value=1.7e-21 Score=231.49 Aligned_cols=281 Identities=12% Similarity=0.088 Sum_probs=151.0
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHH-HHHHHHhCCcCccEeeeeeE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTV-VEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva-~~v~~e~g~~~g~~~~~vG~ 283 (858)
-+.++||||||++.+..+..+-...|. ..+ .....++|+++||++|+.|.. +.+ +.++..++..
T Consensus 202 ll~~~TGsGKT~~~~~~~~~l~~~~~~-------~~~-~~~~~~vlil~P~~~L~~Q~~~~~~-~~~~~~~~~~------ 266 (590)
T 3h1t_A 202 LITMATGTGKTVVAFQISWKLWSARWN-------RTG-DYRKPRILFLADRNVLVDDPKDKTF-TPFGDARHKI------ 266 (590)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTTCC-------SSC-SSSCCCEEEEEC-----------CC-TTTCSSEEEC------
T ss_pred EEEecCCCChHHHHHHHHHHHHhcccc-------ccc-ccCCCeEEEEeCCHHHHHHHHHHHH-Hhcchhhhhh------
Confidence 456999999995544433222111110 000 012346899999999999997 433 3333222111
Q ss_pred EEeccceeecceeEEEeecCcccc-CC-----CccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCc
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-SG-----VEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQL 351 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~~-----~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~ 351 (858)
. ........+|+|+||++|.+ .. .......+.+| |+.. .+. ...+.+.+. . +..
T Consensus 267 --~-~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~----~~~--~~~~~il~~----~-~~~ 332 (590)
T 3h1t_A 267 --E-GGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSA----RDN--SNWREILEY----F-EPA 332 (590)
T ss_dssp --C-C--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------------CHHHHHH----S-TTS
T ss_pred --h-ccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccc----cch--HHHHHHHHh----C-Ccc
Confidence 1 11223457999999999987 32 12223345444 6554 211 122333322 1 346
Q ss_pred eEEEEeccc---CHHHHHHHhhcccCCCCcEEEec-------CeecceeEEEecC-------------------------
Q psy2470 352 KLIISSATV---DAEEICQFYNISASSNATILSVK-------GHLYPVSVYYSND------------------------- 396 (858)
Q Consensus 352 q~il~SAT~---~~~~~~~~~~~~~~~~~~~i~v~-------g~~~~v~~~~~~~------------------------- 396 (858)
++++||||. +...+..+|+. ++.... +-..|...+....
T Consensus 333 ~~l~lTATP~~~~~~~~~~~f~~------~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (590)
T 3h1t_A 333 FQIGMTATPLREDNRDTYRYFGN------PIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGE 406 (590)
T ss_dssp EEEEEESSCSCTTTHHHHHHSCS------CSEEECHHHHHHHTSSCCEEEEEEEETTCC---------------------
T ss_pred eEEEeccccccccchhHHHHcCC------ceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccccccc
Confidence 899999998 23445666652 111110 0001111110000
Q ss_pred -Cccc---------hHHHHHHHHHHHHhh-CCCCCEEEEcCCHHHHHHHHHHHHHhccC-CCCcceEEEeccCCCCHHHH
Q psy2470 397 -PVVN---------YVQGVVDTAIKIHES-MPVGDILAFVIGLEQIEHIIGILKQYHNQ-REDLKLLILPMHGSLPNNEQ 464 (858)
Q Consensus 397 -~~~~---------~~~~~~~~l~~i~~~-~~~g~iLVFl~t~~~i~~l~~~L~~~~~~-~~~~~~~v~~LHg~l~q~~r 464 (858)
...+ ......+.+...... .+.+++|||+++++.++.+++.|++.... ....+-.+..+||++++ +|
T Consensus 407 ~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r 485 (590)
T 3h1t_A 407 YQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IG 485 (590)
T ss_dssp --CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HH
T ss_pred CCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HH
Confidence 0000 011122223332322 34589999999999999999999854110 00011236778999864 79
Q ss_pred HHhcCCCCCCcEE---EEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC
Q psy2470 465 IKVFRPTPRAMRK---IVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS 539 (858)
Q Consensus 465 ~~v~~~f~~g~~k---VlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~ 539 (858)
.++++.|++|..+ |++||+++++|+|+|++++||+ |+ .|-|...|.||+||+||.++
T Consensus 486 ~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~--------~~----------~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 486 KGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVL--------AR----------VVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEE--------ES----------CCCCHHHHHHHHTTSCCCBG
T ss_pred HHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEE--------Ee----------cCCChHHHHHHHhhhcccCc
Confidence 9999999998766 8999999999999999999999 66 56788999999999999875
No 56
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=5.3e-21 Score=191.15 Aligned_cols=137 Identities=15% Similarity=0.217 Sum_probs=111.5
Q ss_pred ceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHh
Q psy2470 388 PVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKV 467 (858)
Q Consensus 388 ~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v 467 (858)
.++++|...... +.+...+..++...+.+++|||+++++.++.+++.|.+. ++.+..+||+|++.+|.++
T Consensus 7 ~i~q~~~~~~~~---~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~~g~~~~~~R~~~ 76 (175)
T 2rb4_A 7 NIRQYYVLCEHR---KDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD-------GHQVSLLSGELTVEQRASI 76 (175)
T ss_dssp CEEEEEEECSSH---HHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT-------TCCEEEECSSCCHHHHHHH
T ss_pred CceEEEEEcCCh---HhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc-------CCcEEEEeCCCCHHHHHHH
Confidence 466777654432 336667777877777889999999999999999999976 8889999999999999999
Q ss_pred cCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 468 FRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 468 ~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
++.|++|..+|||||+++++|+|+|++++||++++|... + ...+.++|.||+|||||.|. |.||.++
T Consensus 77 ~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~------~------~~~~~~~~~qr~GR~gR~g~~g~~~~~~ 144 (175)
T 2rb4_A 77 IQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQ------G------EEPDYETYLHRIGRTGRFGKKGLAFNMI 144 (175)
T ss_dssp HHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--------C------CSCCHHHHHHHHCBC----CCEEEEEEE
T ss_pred HHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCc------c------ccCCHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999999994432110 0 11789999999999999986 9999998
No 57
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.84 E-value=5.1e-21 Score=189.00 Aligned_cols=130 Identities=20% Similarity=0.297 Sum_probs=113.9
Q ss_pred ceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHh
Q psy2470 388 PVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKV 467 (858)
Q Consensus 388 ~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v 467 (858)
.++++|......+ +...+.+++....++++|||+++++.++.+++.|.+. ++.+..+||+|++.+|.++
T Consensus 9 ~i~~~~~~~~~~~----K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~hg~~~~~~r~~~ 77 (163)
T 2hjv_A 9 NIEHAVIQVREEN----KFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDL-------GYPCDKIHGGMIQEDRFDV 77 (163)
T ss_dssp CEEEEEEECCGGG----HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHH
T ss_pred cceEEEEECChHH----HHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHc-------CCcEEEEeCCCCHHHHHHH
Confidence 4666666554433 4455556665556789999999999999999999987 8899999999999999999
Q ss_pred cCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 468 FRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 468 ~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
++.|++|..+|||||+++++|+|+|++++||+ || .|.+.++|.||+||+||.|. |.|+.++
T Consensus 78 ~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~--------~~----------~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 139 (163)
T 2hjv_A 78 MNEFKRGEYRYLVATDVAARGIDIENISLVIN--------YD----------LPLEKESYVHRTGRTGRAGNKGKAISFV 139 (163)
T ss_dssp HHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE--------SS----------CCSSHHHHHHHTTTSSCTTCCEEEEEEE
T ss_pred HHHHHcCCCeEEEECChhhcCCchhcCCEEEE--------eC----------CCCCHHHHHHhccccCcCCCCceEEEEe
Confidence 99999999999999999999999999999999 66 57889999999999999986 9999998
No 58
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.84 E-value=4.6e-21 Score=223.06 Aligned_cols=157 Identities=21% Similarity=0.233 Sum_probs=118.9
Q ss_pred eEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCeecce-e-----EEEecCCccchHHHHHHHHHHHHhhCCCCCEEE
Q psy2470 352 KLIISSATV--DAEEICQFYNISASSNATILSVKGHLYPV-S-----VYYSNDPVVNYVQGVVDTAIKIHESMPVGDILA 423 (858)
Q Consensus 352 q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~~~v-~-----~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLV 423 (858)
++..||+|. ..+.|.+.++ ..++.+|... |+ . .+|. ...++....+..+...+. .+.++||
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~------l~vv~IPtnk-p~~R~d~~d~vy~--t~~eK~~al~~~I~~~~~--~gqpVLV 479 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYG------MEVVVIPTHK-PMIRKDHDDLVFR--TQKEKYEKIVEEIEKRYK--KGQPVLV 479 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSC------CCEEECCCSS-CCCCEECCCEEES--SHHHHHHHHHHHHHHHHH--HTCCEEE
T ss_pred HHeEECCCCchHHHHHHHHhC------CeEEEECCCC-CcceeecCcEEEe--cHHHHHHHHHHHHHHHhh--CCCCEEE
Confidence 678899999 5567777775 5677776432 21 1 1222 112222333333333332 2567999
Q ss_pred EcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCC--------Cee
Q psy2470 424 FVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIP--------GIV 495 (858)
Q Consensus 424 Fl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp--------~V~ 495 (858)
|++|++.++.+++.|.+. |+.+..|||+..+.++..+.+++++| .|+||||+|+||+||+ |+.
T Consensus 480 Ft~S~e~sE~Ls~~L~~~-------Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~Ggl 550 (822)
T 3jux_A 480 GTTSIEKSELLSSMLKKK-------GIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGL 550 (822)
T ss_dssp EESSHHHHHHHHHHHHTT-------TCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSC
T ss_pred EECCHHHHHHHHHHHHHC-------CCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCC
Confidence 999999999999999977 88999999997777776666677777 5999999999999998 778
Q ss_pred EEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 496 YVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 496 ~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+||| |+ .|.|...|.||+|||||.|. |.++.+.
T Consensus 551 hVIn--------te----------~Pes~r~y~qriGRTGRqG~~G~a~~fv 584 (822)
T 3jux_A 551 CIIG--------TE----------RHESRRIDNQLRGRAGRQGDPGESIFFL 584 (822)
T ss_dssp EEEE--------SS----------CCSSHHHHHHHHTTSSCSSCCCEEEEEE
T ss_pred EEEe--------cC----------CCCCHHHHHHhhCccccCCCCeeEEEEe
Confidence 9999 66 78899999999999999997 9998877
No 59
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.84 E-value=4.5e-21 Score=189.79 Aligned_cols=130 Identities=19% Similarity=0.358 Sum_probs=109.5
Q ss_pred eeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhc
Q psy2470 389 VSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVF 468 (858)
Q Consensus 389 v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~ 468 (858)
++++|......+ .+...+.+++...+.+++|||+++++.++.+++.|++. ++.+..+||++++.+|.+++
T Consensus 4 i~~~~~~~~~~~---~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~ 73 (165)
T 1fuk_A 4 IKQFYVNVEEEE---YKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND-------KFTVSAIYSDLPQQERDTIM 73 (165)
T ss_dssp CEEEEEEEESGG---GHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHH
T ss_pred cEEEEEECCcch---hHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc-------CCCEEEEECCCCHHHHHHHH
Confidence 455555443333 24555666666667789999999999999999999976 78899999999999999999
Q ss_pred CCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 469 RPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 469 ~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+.|++|..+|||||+++++|+|+|++++||+ || .|.+.++|.||+|||||.|. |.|+.++
T Consensus 74 ~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~--------~~----------~p~~~~~~~qr~GR~gR~g~~g~~~~~~ 134 (165)
T 1fuk_A 74 KEFRSGSSRILISTDLLARGIDVQQVSLVIN--------YD----------LPANKENYIHRIGRGGRFGRKGVAINFV 134 (165)
T ss_dssp HHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE--------SS----------CCSSGGGGGGSSCSCC-----CEEEEEE
T ss_pred HHHHcCCCEEEEEcChhhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999999999 66 57788999999999999986 9999998
No 60
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.83 E-value=8.8e-21 Score=189.14 Aligned_cols=130 Identities=16% Similarity=0.331 Sum_probs=115.2
Q ss_pred ceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHh
Q psy2470 388 PVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKV 467 (858)
Q Consensus 388 ~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v 467 (858)
.++++|......+ +...+.+++...+.+++|||+++++.++.+++.|... ++.+..+||+|++.+|.++
T Consensus 5 ~i~q~~~~~~~~~----K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~hg~~~~~~r~~~ 73 (172)
T 1t5i_A 5 GLQQYYVKLKDNE----KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ-------NFPAIAIHRGMPQEERLSR 73 (172)
T ss_dssp CCEEEEEECCGGG----HHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHH
T ss_pred CeEEEEEECChHH----HHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc-------CCCEEEEECCCCHHHHHHH
Confidence 4666776654433 4556666776667789999999999999999999977 8889999999999999999
Q ss_pred cCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 468 FRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 468 ~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
++.|++|..+||||||++++|+|+|++++||+ || .|.+.++|.||+|||||.|. |.|+.++
T Consensus 74 ~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~--------~d----------~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 135 (172)
T 1t5i_A 74 YQQFKDFQRRILVATNLFGRGMDIERVNIAFN--------YD----------MPEDSDTYLHRVARAGRFGTKGLAITFV 135 (172)
T ss_dssp HHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE--------SS----------CCSSHHHHHHHHHHHTGGGCCCEEEEEE
T ss_pred HHHHHCCCCcEEEECCchhcCcchhhCCEEEE--------EC----------CCCCHHHHHHHhcccccCCCCcEEEEEE
Confidence 99999999999999999999999999999999 66 67889999999999999986 9999998
No 61
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.82 E-value=1.7e-20 Score=190.37 Aligned_cols=141 Identities=17% Similarity=0.201 Sum_probs=110.1
Q ss_pred CCcEEEecCee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEE
Q psy2470 376 NATILSVKGHL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLI 452 (858)
Q Consensus 376 ~~~~i~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v 452 (858)
+|..+.+.... ..++++|...... .+...+.+++... .+++|||+++++.++.+++.|+.. ++.+
T Consensus 14 ~p~~i~v~~~~~~~~~i~q~~~~~~~~----~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~-------g~~~ 81 (191)
T 2p6n_A 14 GTENLYFQSMGAASLDVIQEVEYVKEE----AKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLK-------GVEA 81 (191)
T ss_dssp --------------CCSEEEEEECCGG----GHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHH-------TCCE
T ss_pred CCEEEEECCCCCCCcCceEEEEEcChH----HHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHc-------CCcE
Confidence 34445543221 3456666544433 3455566666554 568999999999999999999977 8889
Q ss_pred EeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhc
Q psy2470 453 LPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAG 532 (858)
Q Consensus 453 ~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~G 532 (858)
..+||++++++|.++++.|++|+.+||||||++++|+|+|++++||| || .|.+.++|.||+|
T Consensus 82 ~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~--------~d----------~p~~~~~~~qr~G 143 (191)
T 2p6n_A 82 VAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVIN--------YD----------MPEEIENYVHRIG 143 (191)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE--------SS----------CCSSHHHHHHHHT
T ss_pred EEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999 77 6788999999999
Q ss_pred ccCCCCC-ceEEEeh
Q psy2470 533 RAGRVRS-GHVYRKN 546 (858)
Q Consensus 533 RaGR~g~-G~~~rL~ 546 (858)
||||.|. |.|+.++
T Consensus 144 R~gR~g~~g~~i~l~ 158 (191)
T 2p6n_A 144 RTGCSGNTGIATTFI 158 (191)
T ss_dssp TSCC---CCEEEEEE
T ss_pred ccccCCCCcEEEEEE
Confidence 9999986 9999998
No 62
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.81 E-value=3e-20 Score=187.53 Aligned_cols=131 Identities=18% Similarity=0.210 Sum_probs=99.6
Q ss_pred cceeEEEecCCccchHHHHHHHHHHHHhhC-CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHH
Q psy2470 387 YPVSVYYSNDPVVNYVQGVVDTAIKIHESM-PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQI 465 (858)
Q Consensus 387 ~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~-~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~ 465 (858)
..++++|......+ +...+.+++... +.+++|||+++++.++.+++.|+.. ++.+..+||++++.+|.
T Consensus 18 ~~i~q~~~~v~~~~----K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-------g~~~~~lhg~~~~~~r~ 86 (185)
T 2jgn_A 18 ENITQKVVWVEESD----KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE-------GYACTSIHGDRSQRDRE 86 (185)
T ss_dssp TTEEEEEEECCGGG----HHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT-------TCCEEEEC--------C
T ss_pred CCceEEEEEeCcHH----HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc-------CCceEEEeCCCCHHHHH
Confidence 35666666554443 344555555554 4678999999999999999999976 88999999999999999
Q ss_pred HhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEE
Q psy2470 466 KVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYR 544 (858)
Q Consensus 466 ~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~r 544 (858)
++++.|++|..+||||||++++|+|+|++++||+ || .|.+.++|.||+|||||.|. |.|+.
T Consensus 87 ~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~--------~d----------~p~s~~~~~Qr~GR~~R~g~~g~~~~ 148 (185)
T 2jgn_A 87 EALHQFRSGKSPILVATAVAARGLDISNVKHVIN--------FD----------LPSDIEEYVHRIGRTGRVGNLGLATS 148 (185)
T ss_dssp HHHHHHHHTSSSEEEEEC------CCCSBSEEEE--------SS----------CCSSHHHHHHHHTTBCCTTSCEEEEE
T ss_pred HHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHccccCCCCCCcEEEE
Confidence 9999999999999999999999999999999999 76 67889999999999999985 99999
Q ss_pred eh
Q psy2470 545 KN 546 (858)
Q Consensus 545 L~ 546 (858)
++
T Consensus 149 ~~ 150 (185)
T 2jgn_A 149 FF 150 (185)
T ss_dssp EE
T ss_pred EE
Confidence 99
No 63
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.80 E-value=4.4e-20 Score=221.17 Aligned_cols=110 Identities=20% Similarity=0.232 Sum_probs=99.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeE
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVY 496 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~ 496 (858)
..+++|||++|+..++.+++.|++. |+.+..+||++++.+|.++++.|++|+.+|+||||++++|+|+|+|++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~-------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~l 516 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI-------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSL 516 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc-------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCE
Confidence 3578999999999999999999987 888999999999999999999999999999999999999999999999
Q ss_pred EEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 497 VIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 497 VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
||+++..+ .| .|.|..+|+||+|||||.++|.|+.++
T Consensus 517 Vi~~d~d~-------~G------~p~s~~~~iQr~GRagR~~~G~~i~~~ 553 (661)
T 2d7d_A 517 VAILDADK-------EG------FLRSERSLIQTIGRAARNAEGRVIMYA 553 (661)
T ss_dssp EEETTTTC-------CT------TTTSHHHHHHHHHTTTTSTTCEEEEEC
T ss_pred EEEeCccc-------cc------CCCCHHHHHHHhCcccCCCCCEEEEEE
Confidence 99944211 12 378999999999999999889999988
No 64
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.79 E-value=2.5e-20 Score=226.63 Aligned_cols=134 Identities=36% Similarity=0.529 Sum_probs=122.7
Q ss_pred cccceeeccCHHHH-hccccCCCcccccCChhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccCCCcc
Q psy2470 40 CSRKFSRLYTEASF-SQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVNGNLT 118 (858)
Q Consensus 40 ~~g~c~rLy~~~~~-~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~~lt 118 (858)
.+|+||+||++++| +.|.+++.|||+|++|++++|++|+||++++..|+|+|||+.+++.+|++.|+.+||||++|+||
T Consensus 432 ~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald~~~~lT 511 (773)
T 2xau_A 432 RPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLT 511 (773)
T ss_dssp SSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBCTTSCBC
T ss_pred CCCEEEEEecHHHhcccccccCCCccccCcHHHHHHHHHHcCCCChhhccccCCCcHHHHHHHHHHHHHcCCcccCCCcC
Confidence 38999999999999 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhcCCCCchhhhHHhhccccc----------chHHHHHHHhhhhhcccccCCCCcccccc
Q psy2470 119 KPVGETMAEMPLHPIHAKVLLSSGSVL----------DSAVEILLHRLRGLCDNVDSGPETFHDHE 174 (858)
Q Consensus 119 ~~lG~~ma~lp~~p~~~~~l~~s~s~~----------~~~~~~~~~r~~~~~~~~~~~~~~f~~~e 174 (858)
++|+.||+||++|++|+||+.+..+. +++++++|.+|.+..+.++..+..|.+.+
T Consensus 512 -~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~~~~ 576 (773)
T 2xau_A 512 -PLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPD 576 (773)
T ss_dssp -HHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTCCTT
T ss_pred -hhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhccCCC
Confidence 79999999999999999999887764 34467788999998888887777776544
No 65
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.65 E-value=1.2e-20 Score=187.61 Aligned_cols=117 Identities=17% Similarity=0.304 Sum_probs=106.2
Q ss_pred HHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCc
Q psy2470 405 VVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNI 484 (858)
Q Consensus 405 ~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdv 484 (858)
+...+.+++...+.+++|||+++++.++.+++.|+.. ++.+..+||++++.+|.++++.|++|..+|||||++
T Consensus 17 k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~-------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~ 89 (170)
T 2yjt_D 17 KTALLVHLLKQPEATRSIVFVRKRERVHELANWLREA-------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDV 89 (170)
Confidence 4455666666556789999999999999999999876 889999999999999999999999999999999999
Q ss_pred ccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 485 AETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 485 AergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+++|+|+|++++||+ || .|.+.++|.||+|||||.|. |.|+.++
T Consensus 90 ~~~Gid~~~~~~Vi~--------~~----------~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 134 (170)
T 2yjt_D 90 AARGIDIPDVSHVFN--------FD----------MPRSGDTYLHRIGRTARAGRKGTAISLV 134 (170)
Confidence 999999999999999 66 67888999999999999985 9999988
No 66
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.74 E-value=7e-18 Score=202.18 Aligned_cols=109 Identities=19% Similarity=0.182 Sum_probs=99.7
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYV 497 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~V 497 (858)
.+++|||++|+..++.+++.|.+. ++.+..+||++++.+|.++++.|++|+.+||||||++++|+|+|+|++|
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~-------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lV 511 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH-------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLV 511 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc-------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEE
Confidence 578999999999999999999987 8889999999999999999999999999999999999999999999999
Q ss_pred EcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 498 IDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 498 Id~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|+++..+ .| .|.|..+|+||+|||||.++|.|+.++
T Consensus 512 I~~d~d~-------~G------~p~s~~~~iQr~GRagR~~~G~~i~~~ 547 (664)
T 1c4o_A 512 AILDADK-------EG------FLRSERSLIQTIGRAARNARGEVWLYA 547 (664)
T ss_dssp EETTTTS-------CS------GGGSHHHHHHHHGGGTTSTTCEEEEEC
T ss_pred EEeCCcc-------cC------CCCCHHHHHHHHCccCcCCCCEEEEEE
Confidence 9944211 12 478999999999999999999999988
No 67
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.74 E-value=1.8e-18 Score=215.58 Aligned_cols=119 Identities=12% Similarity=0.111 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCc--EEEEEe
Q psy2470 404 GVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAM--RKIVIA 481 (858)
Q Consensus 404 ~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~--~kVlvA 481 (858)
.+...+..++...+.+++|||+++++.++.+++.|... .|+.+..+||+|++++|.++++.|++|+ .+||||
T Consensus 489 ~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~------~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLva 562 (968)
T 3dmq_A 489 PRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER------EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLC 562 (968)
T ss_dssp HHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT------TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEEC
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH------cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEe
Confidence 35666777777677889999999999999999999842 1788999999999999999999999998 999999
Q ss_pred cCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-c--eEEEeh
Q psy2470 482 TNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-G--HVYRKN 546 (858)
Q Consensus 482 TdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G--~~~rL~ 546 (858)
|+++++|+|+|++++||+ || .|-+.+.|.||+||+||.|. | .+|+++
T Consensus 563 T~v~~~GlDl~~~~~VI~--------~d----------~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~ 612 (968)
T 3dmq_A 563 SEIGSEGRNFQFASHMVM--------FD----------LPFNPDLLEQRIGRLDRIGQAHDIQIHVPY 612 (968)
T ss_dssp SCCTTCSSCCTTCCEEEC--------SS----------CCSSHHHHHHHHHTTSCSSSCSCCEEEEEE
T ss_pred cchhhcCCCcccCcEEEE--------ec----------CCCCHHHHHHHhhccccCCCCceEEEEEec
Confidence 999999999999999999 77 56788999999999999987 5 455555
No 68
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.69 E-value=1.9e-17 Score=205.51 Aligned_cols=285 Identities=11% Similarity=0.036 Sum_probs=168.3
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
.-+.++||||||++++..+ . .+.. .+ ...++||++||++|+.|+.+.+.+-....+. .+.
T Consensus 303 gli~~~TGSGKT~t~~~l~------~----ll~~--~~---~~~rvLvlvpr~eL~~Q~~~~f~~f~~~~v~-----~~~ 362 (1038)
T 2w00_A 303 GYIWHTTGSGKTLTSFKAA------R----LATE--LD---FIDKVFFVVDRKDLDYQTMKEYQRFSPDSVN-----GSE 362 (1038)
T ss_dssp EEEEECTTSSHHHHHHHHH------H----HHTT--CT---TCCEEEEEECGGGCCHHHHHHHHTTSTTCSS-----SSC
T ss_pred EEEEecCCCCHHHHHHHHH------H----HHHh--cC---CCceEEEEeCcHHHHHHHHHHHHHhcccccc-----ccc
Confidence 3456899999994432211 1 1111 11 1135899999999999998877432211110 011
Q ss_pred EEec--cceeecceeEEEeecCcccc-CCCc---cCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCc
Q psy2470 284 MFRK--GRMKILVSKIFKMSQGKPSD-SGVE---PISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQL 351 (858)
Q Consensus 284 ~vr~--~~~~~~~t~I~v~TpGrLl~-~~~~---~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~ 351 (858)
.... ........+|+|+|+++|.+ +... +.+..+.+| |+.. . ++.+.+.+. -++.
T Consensus 363 s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~----~----~~~~~I~~~-----~p~a 429 (1038)
T 2w00_A 363 NTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF----G----EAQKNLKKK-----FKRY 429 (1038)
T ss_dssp CCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH----H----HHHHHHHHH-----CSSE
T ss_pred CHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc----h----HHHHHHHHh-----CCcc
Confidence 1100 00112357999999999987 3221 233444444 6655 2 334444321 2457
Q ss_pred eEEEEecccCH-------HHHHHHhhcccCCCCcEEEe-------cCeecceeEEEecCCc---------c---------
Q psy2470 352 KLIISSATVDA-------EEICQFYNISASSNATILSV-------KGHLYPVSVYYSNDPV---------V--------- 399 (858)
Q Consensus 352 q~il~SAT~~~-------~~~~~~~~~~~~~~~~~i~v-------~g~~~~v~~~~~~~~~---------~--------- 399 (858)
+++.||||... .....+|+ .++... .|-..|+.+.|..... .
T Consensus 430 ~~lgfTATP~~~~~~~~~~~t~~~FG------~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~ 503 (1038)
T 2w00_A 430 YQFGFTGTPIFPENALGSETTASVFG------RELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAEN 503 (1038)
T ss_dssp EEEEEESSCCCSTTCTTSCCHHHHHC------SEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCS
T ss_pred cEEEEeCCccccccchhhhHHHHHhC------CeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHH
Confidence 99999999821 24556776 222221 1333355544442100 0
Q ss_pred -------chHHHHHHHHHHHH-hh-------CCCCCEEEEcCCHHHHHHHHHHHHHhcc-----CCCCcceEE-EeccCC
Q psy2470 400 -------NYVQGVVDTAIKIH-ES-------MPVGDILAFVIGLEQIEHIIGILKQYHN-----QREDLKLLI-LPMHGS 458 (858)
Q Consensus 400 -------~~~~~~~~~l~~i~-~~-------~~~g~iLVFl~t~~~i~~l~~~L~~~~~-----~~~~~~~~v-~~LHg~ 458 (858)
+........+..-. .. ..++++||||++++.+..+++.|.+... ..+..++.+ +.+||+
T Consensus 504 ~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~ 583 (1038)
T 2w00_A 504 QQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFA 583 (1038)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCC
Confidence 00111122222211 11 1245799999999999999999986521 001123444 556653
Q ss_pred ----------C----------CH-----------------------------HHHHHhcCCCCCCcEEEEEecCcccccC
Q psy2470 459 ----------L----------PN-----------------------------NEQIKVFRPTPRAMRKIVIATNIAETSI 489 (858)
Q Consensus 459 ----------l----------~q-----------------------------~~r~~v~~~f~~g~~kVlvATdvAergl 489 (858)
+ ++ .+|..++++|++|..+|||+||++.||+
T Consensus 584 ~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGf 663 (1038)
T 2w00_A 584 ANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGF 663 (1038)
T ss_dssp C------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSC
T ss_pred CccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCc
Confidence 2 22 2477888999999999999999999999
Q ss_pred CCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-----ceEEEeh
Q psy2470 490 TIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-----GHVYRKN 546 (858)
Q Consensus 490 dIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-----G~~~rL~ 546 (858)
|+|.+ .|++ +| .|.+...|+||+||+||.++ |.++.+.
T Consensus 664 DiP~l-~tly--------lD----------kpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~ 706 (1038)
T 2w00_A 664 DAPTL-NTLF--------VD----------KNLRYHGLMQAFSRTNRIYDATKTFGNIVTFR 706 (1038)
T ss_dssp CCTTE-EEEE--------EE----------SCCCHHHHHHHHHTTCCCCCTTCCSEEEEESS
T ss_pred Ccccc-cEEE--------Ec----------cCCCccceeehhhccCcCCCCCCCcEEEEEcc
Confidence 99999 6777 66 67788999999999999875 6666655
No 69
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.64 E-value=4.4e-17 Score=170.58 Aligned_cols=148 Identities=14% Similarity=0.113 Sum_probs=112.4
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
+-+.|+|||||| .++.++.+.... ..+. .....++++.|+|++|.|++++++++++..+|.. +||
T Consensus 79 ~~i~g~TGsGKT-----t~~~~~~~~~~~------~~~~-~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~---~g~ 143 (235)
T 3llm_A 79 VIIRGATGCGKT-----TQVPQFILDDFI------QNDR-AAECNIVVTQPRRISAVSVAERVAFERGEEPGKS---CGY 143 (235)
T ss_dssp EEEECCTTSSHH-----HHHHHHHHHHHH------HTTC-GGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS---EEE
T ss_pred EEEEeCCCCCcH-----HhHHHHHhcchh------hcCC-CCceEEEEeccchHHHHHHHHHHHHHhccccCce---EEE
Confidence 346799999999 222222111110 0111 1234579999999999999999999999999988 999
Q ss_pred EEeccceee-cceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEE
Q psy2470 284 MFRKGRMKI-LVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLI 354 (858)
Q Consensus 284 ~vr~~~~~~-~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~i 354 (858)
.+++++... ..++|+|+|||+|++ +.. .++++++| |+++ +|+.+..++.+. ...++.|++
T Consensus 144 ~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~----~~~~~~~l~~i~-----~~~~~~~~i 212 (235)
T 3llm_A 144 SVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDIN----TDFLLVVLRDVV-----QAYPEVRIV 212 (235)
T ss_dssp EETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHH----HHHHHHHHHHHH-----HHCTTSEEE
T ss_pred eechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcc----hHHHHHHHHHHH-----hhCCCCeEE
Confidence 999887765 568999999999999 543 46777766 4688 888888888877 445789999
Q ss_pred EEecccCHHHHHHHhhcccCCCCcEEEe
Q psy2470 355 ISSATVDAEEICQFYNISASSNATILSV 382 (858)
Q Consensus 355 l~SAT~~~~~~~~~~~~~~~~~~~~i~v 382 (858)
+||||++.+.|++||+ ++|++.|
T Consensus 213 l~SAT~~~~~~~~~~~-----~~pvi~v 235 (235)
T 3llm_A 213 LMSATIDTSMFCEYFF-----NCPIIEV 235 (235)
T ss_dssp EEECSSCCHHHHHHTT-----SCCCEEC
T ss_pred EEecCCCHHHHHHHcC-----CCCEEeC
Confidence 9999998888999998 5776653
No 70
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.61 E-value=5.1e-16 Score=180.45 Aligned_cols=106 Identities=18% Similarity=0.117 Sum_probs=88.0
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCC-cEE-EEEecCcccccCCCCCe
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRA-MRK-IVIATNIAETSITIPGI 494 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g-~~k-VlvATdvAergldIp~V 494 (858)
+..++|||+.....++.+++.|.+.. ++.+..+||++++++|.++++.|++| ..+ +|+||+++++|+|++++
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~ 413 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKEL------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSA 413 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHH------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTC
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhh------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhC
Confidence 46789999999999999999998531 66788899999999999999999887 454 89999999999999999
Q ss_pred eEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh
Q psy2470 495 VYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN 546 (858)
Q Consensus 495 ~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~ 546 (858)
++||+ || .|-+.+.+.||+||++|.|. ..+|+++
T Consensus 414 ~~vi~--------~d----------~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv 450 (500)
T 1z63_A 414 NRVIH--------FD----------RWWNPAVEDQATDRVYRIGQTRNVIVHKLI 450 (500)
T ss_dssp SEEEE--------SS----------CCSCC---CHHHHTTTTTTTTSCEEEEEEE
T ss_pred CEEEE--------eC----------CCCCcchHHHHHHHHHHcCCCCeeEEEEEE
Confidence 99999 66 45667788899999999886 4567776
No 71
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.49 E-value=2e-14 Score=156.11 Aligned_cols=174 Identities=11% Similarity=0.060 Sum_probs=104.1
Q ss_pred ccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCC
Q psy2470 163 VDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGV 242 (858)
Q Consensus 163 ~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~ 242 (858)
....|..+|...+...+.++..+ +-+.|+|||||| .||.+|.+... ..
T Consensus 111 g~~~pt~iQ~~ai~~il~~~~~~------------------~l~~a~TGsGKT-----~a~~lp~l~~l----~~----- 158 (300)
T 3fmo_B 111 GFNRPSKIQENALPLMLAEPPQN------------------LIAQSQSGTGKT-----AAFVLAMLSQV----EP----- 158 (300)
T ss_dssp TCCSCCHHHHHHHHHHTSSSCCC------------------EEEECCTTSSHH-----HHHHHHHHHHC----CT-----
T ss_pred CCCCCCHHHHHHHHHHHcCCCCe------------------EEEECCCCCCcc-----HHHHHHHHHhh----hc-----
Confidence 34456666666665555542222 224699999999 66666644321 11
Q ss_pred CCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccce---eecceeEEEeecCcccc-CCC--ccCCCc
Q psy2470 243 GDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRM---KILVSKIFKMSQGKPSD-SGV--EPISQS 316 (858)
Q Consensus 243 g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~---~~~~t~I~v~TpGrLl~-~~~--~~~L~~ 316 (858)
....+++||++|||+||.|++..+.+......+.. +++.++.... ....++|+|+|||+|++ +.. ...+++
T Consensus 159 ~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 159 ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELK---LAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCC---EEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcE---EEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 12234689999999999999887744332222333 3333333222 23457899999999999 433 234556
Q ss_pred ccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEec
Q psy2470 317 YLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVK 383 (858)
Q Consensus 317 ~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~ 383 (858)
+.++ ++++ .. ++...+. .+....+++.|+++||||+ ++..+++.+.. +|.++.+.
T Consensus 236 l~~lVlDEad~l~~----~~---~~~~~~~-~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~----~p~~i~~~ 298 (300)
T 3fmo_B 236 IKVFVLDEADVMIA----TQ---GHQDQSI-RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVP----DPNVIKLK 298 (300)
T ss_dssp CSEEEETTHHHHHH----ST---THHHHHH-HHHTTSCTTCEEEEEESCCCHHHHHHHHHHSS----SCEEEEEC
T ss_pred ceEEEEeCHHHHhh----cc---CcHHHHH-HHHHhCCCCCEEEEEeccCCHHHHHHHHHHCC----CCeEEEec
Confidence 6655 6665 22 2222222 2223557789999999999 56778776663 55555553
No 72
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.46 E-value=1.8e-13 Score=163.88 Aligned_cols=105 Identities=10% Similarity=0.167 Sum_probs=94.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcE---EEEEecCcccccCCCCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMR---KIVIATNIAETSITIPG 493 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~---kVlvATdvAergldIp~ 493 (858)
+..++|||+.....++.+.+.|... ++.+..+||++++++|.++++.|.+|.. .+|+||++++.|||+++
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~-------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~ 487 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNR-------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIG 487 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHH-------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTT
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHC-------CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCccccc
Confidence 4678999999999999999999877 8889999999999999999999988754 58999999999999999
Q ss_pred eeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh
Q psy2470 494 IVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN 546 (858)
Q Consensus 494 V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~ 546 (858)
+++||+ || .|-+++.+.||+||++|.|. ..+|+++
T Consensus 488 a~~Vi~--------~d----------~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 488 ANRLVM--------FD----------PDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp EEEEEE--------CS----------CCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred CCEEEE--------EC----------CCCCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 999999 77 56789999999999999986 5677777
No 73
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=99.43 E-value=8.8e-15 Score=155.43 Aligned_cols=93 Identities=32% Similarity=0.428 Sum_probs=76.4
Q ss_pred CCCCCC-CCCCCHHHHHHHHHHHHhcCccccCCCcchHHHhhhhcCCCCchhhhHHhhccccc----------chHHHHH
Q psy2470 84 ILRFSF-PSPPPAQNLRVALELLYSLGAMDVNGNLTKPVGETMAEMPLHPIHAKVLLSSGSVL----------DSAVEIL 152 (858)
Q Consensus 84 ~~~f~~-~~~P~~~~l~~a~~~L~~l~ald~~~~lt~~lG~~ma~lp~~p~~~~~l~~s~s~~----------~~~~~~~ 152 (858)
...|+| +||||.+++.+|++.|+.|||||++|+|| ++|++||+||+||++||||+.+..+. .++++++
T Consensus 5 ~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT-~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~ 83 (270)
T 3i4u_A 5 GPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLT-RLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNV 83 (270)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTSBCTTSCBC-HHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCC
T ss_pred hhccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCcc-HHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCcc
Confidence 457999 99999999999999999999999999999 79999999999999999999987765 3457789
Q ss_pred HHhhhhhcccccCCCCcccccccch
Q psy2470 153 LHRLRGLCDNVDSGPETFHDHEMCF 177 (858)
Q Consensus 153 ~~r~~~~~~~~~~~~~~f~~~e~~~ 177 (858)
|.+|.+..+.+++++..|.+.+.++
T Consensus 84 f~~p~~~~~~a~~~~~~f~~~~sD~ 108 (270)
T 3i4u_A 84 FYRPKDKQALADQKKAKFHQTEGDH 108 (270)
T ss_dssp BCCCGGGHHHHHHHHHTTCBTTBHH
T ss_pred ccCCchhHHHHHHHHHHccCCCChH
Confidence 9999999999998888888765443
No 74
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.38 E-value=7e-13 Score=162.64 Aligned_cols=105 Identities=15% Similarity=0.151 Sum_probs=93.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCc---EEEEEecCcccccCCCCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAM---RKIVIATNIAETSITIPG 493 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~---~kVlvATdvAergldIp~ 493 (858)
...++|||+.....++.+.+.|... ++.+..+||++++++|.++++.|.+|. ..+|+||.+++.|||+++
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~-------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~ 643 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIK-------GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMT 643 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH-------TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTT
T ss_pred CCCeEEEEechHHHHHHHHHHHHhC-------CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccc
Confidence 3568999999999999999999876 888999999999999999999998754 359999999999999999
Q ss_pred eeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh
Q psy2470 494 IVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN 546 (858)
Q Consensus 494 V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~ 546 (858)
+++||. || .|-++..+.||.||++|.|. ..+|+|+
T Consensus 644 a~~VI~--------~D----------~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv 681 (800)
T 3mwy_W 644 ADTVVI--------FD----------SDWNPQADLQAMARAHRIGQKNHVMVYRLV 681 (800)
T ss_dssp CCEEEE--------SS----------CCSCSHHHHHHHTTTSCSSCCSCEEEEEEE
T ss_pred cceEEE--------ec----------CCCChhhHHHHHHHHHhcCCCceEEEEEEe
Confidence 999999 77 45677889999999999885 6778887
No 75
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.37 E-value=1.2e-13 Score=143.34 Aligned_cols=147 Identities=14% Similarity=-0.020 Sum_probs=86.4
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHh--CCcCccEeeeeeE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEM--GCRMDFEYISRGY 283 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~--g~~~g~~~~~vG~ 283 (858)
+.|+|||||| .++.+|.+..... +...........+|+++|||++|.|+++++.+.. +..+...+++...
T Consensus 62 ~~apTGsGKT-----~~~~l~~~~~l~~---~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~ 133 (228)
T 3iuy_A 62 VVAQTGTGKT-----LSYLMPGFIHLDS---QPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNR 133 (228)
T ss_dssp EECCTTSCHH-----HHHHHHHHHHHC------------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC----
T ss_pred EECCCCChHH-----HHHHHHHHHHHHh---ccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCCh
Confidence 4699999999 5555554432211 1000011233468999999999999999886643 2232222111111
Q ss_pred EEeccceeecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
... ......+++|+|+|||+|++ +.. ...+.++.++ ++++ .++...+.+.+. ..+++.|+++
T Consensus 134 ~~~-~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~----~~~~~~~~~i~~-----~~~~~~~~l~ 203 (228)
T 3iuy_A 134 NGQ-IEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLD----MEFEPQIRKILL-----DVRPDRQTVM 203 (228)
T ss_dssp --C-HHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHH----TTCHHHHHHHHH-----HSCSSCEEEE
T ss_pred HHH-HHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhc----cchHHHHHHHHH-----hCCcCCeEEE
Confidence 100 01112457999999999998 333 3346666655 6777 555555555444 5677899999
Q ss_pred EecccC--HHHHHHHhh
Q psy2470 356 SSATVD--AEEICQFYN 370 (858)
Q Consensus 356 ~SAT~~--~~~~~~~~~ 370 (858)
||||++ ++.+...+.
T Consensus 204 ~SAT~~~~~~~~~~~~l 220 (228)
T 3iuy_A 204 TSATWPDTVRQLALSYL 220 (228)
T ss_dssp EESCCCHHHHHHHHTTC
T ss_pred EEeeCCHHHHHHHHHHC
Confidence 999994 456666554
No 76
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.37 E-value=1.5e-13 Score=144.21 Aligned_cols=155 Identities=10% Similarity=-0.050 Sum_probs=90.4
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHH---HhCCcCccEeeeee
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLT---EMGCRMDFEYISRG 282 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~---e~g~~~g~~~~~vG 282 (858)
+.|+|||||| .+|.+|.+..... +... .......+||++|||+||.|+++.+.+ ..+..++..+|+..
T Consensus 71 ~~apTGsGKT-----~~~~l~~l~~l~~---~~~~-~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~ 141 (242)
T 3fe2_A 71 GVAQTGSGKT-----LSYLLPAIVHINH---QPFL-ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAP 141 (242)
T ss_dssp EEECTTSCHH-----HHHHHHHHHHHHT---SCCC-CTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred EECCCcCHHH-----HHHHHHHHHHHHh---cccc-ccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCC
Confidence 4699999999 5555554432211 1111 112234689999999999999776543 33444333311111
Q ss_pred EEEeccceeecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEE
Q psy2470 283 YMFRKGRMKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLI 354 (858)
Q Consensus 283 ~~vr~~~~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~i 354 (858)
.... ......+++|+|+|||+|++ +.. ...+.++.++ ++++ .+|...+.+.+. ..+++.|++
T Consensus 142 ~~~~-~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~----~~~~~~~~~i~~-----~~~~~~q~~ 211 (242)
T 3fe2_A 142 KGPQ-IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD----MGFEPQIRKIVD-----QIRPDRQTL 211 (242)
T ss_dssp HHHH-HHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHH----TTCHHHHHHHHT-----TSCSSCEEE
T ss_pred hHHH-HHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhh----hCcHHHHHHHHH-----hCCccceEE
Confidence 0000 00111357999999999998 432 2345666555 6666 444433333332 567789999
Q ss_pred EEeccc--CHHHHHHHhhcccCCCCcEEEec
Q psy2470 355 ISSATV--DAEEICQFYNISASSNATILSVK 383 (858)
Q Consensus 355 l~SAT~--~~~~~~~~~~~~~~~~~~~i~v~ 383 (858)
+||||+ +++.+++.+.. ++..+.+.
T Consensus 212 ~~SAT~~~~~~~~~~~~l~----~~~~i~~~ 238 (242)
T 3fe2_A 212 MWSATWPKEVRQLAEDFLK----DYIHINIG 238 (242)
T ss_dssp EEESCCCHHHHHHHHHHCS----SCEEEEEC
T ss_pred EEEeecCHHHHHHHHHHCC----CCEEEEec
Confidence 999999 46677776653 45555554
No 77
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.36 E-value=3.6e-13 Score=143.81 Aligned_cols=106 Identities=18% Similarity=0.117 Sum_probs=81.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCC-cEE-EEEecCcccccCCCCCe
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRA-MRK-IVIATNIAETSITIPGI 494 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g-~~k-VlvATdvAergldIp~V 494 (858)
...++|||+.....++.+.+.|.+.. |+.+..+||++++++|.++++.|++| ..+ +|+||+++++|||++++
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a 184 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKEL------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSA 184 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH------CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTC
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhc------CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccC
Confidence 46789999999999999999998521 67788899999999999999999888 666 78999999999999999
Q ss_pred eEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh
Q psy2470 495 VYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN 546 (858)
Q Consensus 495 ~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~ 546 (858)
++||+ || .|-+++.+.||+||++|.|. -.+|+++
T Consensus 185 ~~VI~--------~d----------~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li 221 (271)
T 1z5z_A 185 NRVIH--------FD----------RWWNPAVEDQATDRVYRIGQTRNVIVHKLI 221 (271)
T ss_dssp SEEEE--------CS----------CCSCTTTC--------------CCEEEEEE
T ss_pred CEEEE--------EC----------CCCChhHHHHHHHhccccCCCCceEEEEEe
Confidence 99999 77 56677888999999999886 4467777
No 78
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.33 E-value=3.7e-13 Score=143.10 Aligned_cols=142 Identities=12% Similarity=0.020 Sum_probs=88.8
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+.......... ....++|+++|||+||.|+++++.+ ++...+.. ++...
T Consensus 96 v~a~TGsGKT-----~~~~l~~l~~l~~~~~~~-----~~~~~~lil~Pt~~La~q~~~~~~~-~~~~~~~~---~~~~~ 161 (262)
T 3ly5_A 96 AAAKTGSGKT-----LAFLIPAVELIVKLRFMP-----RNGTGVLILSPTRELAMQTFGVLKE-LMTHHVHT---YGLIM 161 (262)
T ss_dssp ECCCTTSCHH-----HHHHHHHHHHHHHTTCCG-----GGCCCEEEECSSHHHHHHHHHHHHH-HTTTCCSC---EEEEC
T ss_pred EEccCCCCch-----HHHHHHHHHHHHhccccc-----cCCceEEEEeCCHHHHHHHHHHHHH-HHhhcCce---EEEEE
Confidence 4699999999 555555443221110000 1223589999999999999887754 44444444 33322
Q ss_pred ecccee------ecceeEEEeecCcccc-CCCc--cCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCC
Q psy2470 286 RKGRMK------ILVSKIFKMSQGKPSD-SGVE--PISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 286 r~~~~~------~~~t~I~v~TpGrLl~-~~~~--~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~ 350 (858)
+..... ..+++|+|+|||++++ +... ..+.++.++ ++++ .++...+.+.+. ..+++
T Consensus 162 g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~----~~~~~~l~~i~~-----~~~~~ 232 (262)
T 3ly5_A 162 GGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILD----VGFEEELKQIIK-----LLPTR 232 (262)
T ss_dssp SSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHH----TTCHHHHHHHHH-----HSCSS
T ss_pred CCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhh----hhHHHHHHHHHH-----hCCCC
Confidence 222211 1347999999999998 4333 345666655 7777 555444444433 55678
Q ss_pred ceEEEEeccc--CHHHHHHHhh
Q psy2470 351 LKLIISSATV--DAEEICQFYN 370 (858)
Q Consensus 351 ~q~il~SAT~--~~~~~~~~~~ 370 (858)
.|+++||||+ +++.+++.+.
T Consensus 233 ~q~l~~SAT~~~~v~~~~~~~l 254 (262)
T 3ly5_A 233 RQTMLFSATQTRKVEDLARISL 254 (262)
T ss_dssp SEEEEECSSCCHHHHHHHHHHC
T ss_pred CeEEEEEecCCHHHHHHHHHHc
Confidence 9999999999 5667777554
No 79
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.32 E-value=5.9e-13 Score=138.78 Aligned_cols=152 Identities=12% Similarity=0.047 Sum_probs=92.6
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+......- . ......++||++|||++|.|+++++. .++...+.. ++...
T Consensus 67 i~a~TGsGKT-----~~~~~~~l~~l~~~~--~---~~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~---~~~~~ 132 (236)
T 2pl3_A 67 GAAKTGSGKT-----LAFLVPVLEALYRLQ--W---TSTDGLGVLIISPTRELAYQTFEVLR-KVGKNHDFS---AGLII 132 (236)
T ss_dssp EECCTTSCHH-----HHHHHHHHHHHHHTT--C---CGGGCCCEEEECSSHHHHHHHHHHHH-HHTTTSSCC---EEEEC
T ss_pred EEeCCCCcHH-----HHHHHHHHHHHHhhc--c---cccCCceEEEEeCCHHHHHHHHHHHH-HHhCCCCee---EEEEE
Confidence 4699999999 555555443221110 0 01123468999999999999988774 444444444 33222
Q ss_pred eccce-----eecceeEEEeecCcccc-CCCc--cCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCc
Q psy2470 286 RKGRM-----KILVSKIFKMSQGKPSD-SGVE--PISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQL 351 (858)
Q Consensus 286 r~~~~-----~~~~t~I~v~TpGrLl~-~~~~--~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~ 351 (858)
+.... ....++|+|+|||+|++ +... ..+.++.++ ++++ .++...+.+.+. ..+++.
T Consensus 133 g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~----~~~~~~~~~i~~-----~~~~~~ 203 (236)
T 2pl3_A 133 GGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILD----MGFADTMNAVIE-----NLPKKR 203 (236)
T ss_dssp CC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHH----TTTHHHHHHHHH-----TSCTTS
T ss_pred CCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhc----CCcHHHHHHHHH-----hCCCCC
Confidence 22111 11357999999999998 4332 345566555 6666 555444444433 566789
Q ss_pred eEEEEeccc--CHHHHHHHhhcccCCCCcEEEecC
Q psy2470 352 KLIISSATV--DAEEICQFYNISASSNATILSVKG 384 (858)
Q Consensus 352 q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g 384 (858)
|+++||||+ +++.+++.+.. +|..+.+.+
T Consensus 204 ~~l~~SAT~~~~~~~~~~~~~~----~p~~i~~~~ 234 (236)
T 2pl3_A 204 QTLLFSATQTKSVKDLARLSLK----NPEYVWVHE 234 (236)
T ss_dssp EEEEEESSCCHHHHHHHHHSCS----SCEEEECCC
T ss_pred eEEEEEeeCCHHHHHHHHHhCC----CCEEEEeCC
Confidence 999999999 45667776653 566665544
No 80
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.32 E-value=4.1e-12 Score=150.99 Aligned_cols=81 Identities=11% Similarity=0.005 Sum_probs=52.7
Q ss_pred ccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHH---HHhCCcCccEeeeeeE
Q psy2470 207 IGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFL---TEMGCRMDFEYISRGY 283 (858)
Q Consensus 207 ~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~---~e~g~~~g~~~~~vG~ 283 (858)
.++|||||| +++.+|.++..+ .| .+++|++|||+||.|.++.+. +.+|.+++..+||..
T Consensus 98 eakTGeGKT-----Lvf~Lp~~L~aL-------~G-----~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~- 159 (997)
T 2ipc_A 98 EMKTGEGKT-----LVATLAVALNAL-------TG-----KGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHAST- 159 (997)
T ss_dssp ECCSTHHHH-----HHHHHHHHHHHT-------TC-----SCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCC-
T ss_pred eccCCCchH-----HHHHHHHHHHHH-------hC-----CCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCC-
Confidence 489999999 666666544221 11 247999999999999987653 445666555522211
Q ss_pred EEeccceeecceeEEEeecCcc-cc
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKP-SD 307 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrL-l~ 307 (858)
.........++|+|+|||+| +|
T Consensus 160 --~~~r~~ay~~DIvyGTpgrlgfD 182 (997)
T 2ipc_A 160 --PAERRKAYLADVTYVTNSELGFD 182 (997)
T ss_dssp --HHHHHHHHTSSEEEEEHHHHHHH
T ss_pred --HHHHHHHcCCCEEEECchhhhhH
Confidence 11122223579999999999 44
No 81
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.31 E-value=3.2e-13 Score=141.64 Aligned_cols=153 Identities=14% Similarity=0.048 Sum_probs=91.0
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+... ... ......+|+++|||+||.|+++++.+ ++...+.. ++...
T Consensus 71 ~~a~TGsGKT-----~~~~l~~l~~l----~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~---~~~~~ 133 (245)
T 3dkp_A 71 ASAPTGSGKT-----LAFSIPILMQL----KQP----ANKGFRALIISPTRELASQIHRELIK-ISEGTGFR---IHMIH 133 (245)
T ss_dssp EECCTTSCHH-----HHHHHHHHHHH----CSC----CSSSCCEEEECSSHHHHHHHHHHHHH-HTTTSCCC---EECCC
T ss_pred EECCCCCcHH-----HHHHHHHHHHH----hhc----ccCCceEEEEeCCHHHHHHHHHHHHH-HhcccCce---EEEEe
Confidence 4699999999 55555543321 111 11234689999999999999887744 33333433 22111
Q ss_pred -------eccceeecceeEEEeecCcccc-CCCc---cCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCC
Q psy2470 286 -------RKGRMKILVSKIFKMSQGKPSD-SGVE---PISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKR 348 (858)
Q Consensus 286 -------r~~~~~~~~t~I~v~TpGrLl~-~~~~---~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~ 348 (858)
+........++|+|+|||+|++ +..+ ..+.++.++ ++++ . ...++...+...+....+
T Consensus 134 ~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~----~-~~~~~~~~~~~i~~~~~~ 208 (245)
T 3dkp_A 134 KAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFE----D-GKTGFRDQLASIFLACTS 208 (245)
T ss_dssp HHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHH----H-C--CHHHHHHHHHHHCCC
T ss_pred cCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcc----c-ccccHHHHHHHHHHhcCC
Confidence 1122233567999999999998 4333 345566655 3333 1 112344444433333445
Q ss_pred CCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecC
Q psy2470 349 TQLKLIISSATV--DAEEICQFYNISASSNATILSVKG 384 (858)
Q Consensus 349 ~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g 384 (858)
++.|+++||||+ +++.+.+.+.. ++..+.+.+
T Consensus 209 ~~~~~~~~SAT~~~~v~~~~~~~l~----~p~~i~~~~ 242 (245)
T 3dkp_A 209 HKVRRAMFSATFAYDVEQWCKLNLD----NVISVSIGA 242 (245)
T ss_dssp TTCEEEEEESSCCHHHHHHHHHHSS----SCEEEEECC
T ss_pred CCcEEEEEeccCCHHHHHHHHHhCC----CCEEEEeCC
Confidence 688999999999 45667665553 566666654
No 82
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.30 E-value=7.5e-13 Score=138.39 Aligned_cols=141 Identities=12% Similarity=0.039 Sum_probs=81.6
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccE----eeee
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFE----YISR 281 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~----~~~v 281 (858)
+.|+|||||| .++.+|.+... ... ....++||++|||+++.|+++++.+ ++...+.. +++.
T Consensus 72 i~apTGsGKT-----~~~~l~~l~~l----~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~g~~ 136 (237)
T 3bor_A 72 AQAQSGTGKT-----ATFAISILQQL----EIE-----FKETQALVLAPTRELAQQIQKVILA-LGDYMGATCHACIGGT 136 (237)
T ss_dssp ECCCSSHHHH-----HHHHHHHHHHC----CTT-----SCSCCEEEECSSHHHHHHHHHHHHH-HTTTTTCCEEEECC--
T ss_pred EECCCCCcHH-----HHHHHHHHHHH----Hhc-----CCCceEEEEECcHHHHHHHHHHHHH-HhhhcCceEEEEECCC
Confidence 4699999999 44444433311 110 1224689999999999999887754 44333333 1111
Q ss_pred eEEEeccceeecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceE
Q psy2470 282 GYMFRKGRMKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKL 353 (858)
Q Consensus 282 G~~vr~~~~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~ 353 (858)
.............++|+|+|||+|++ +.. ...+..+.++ ++++ .++...+.+.+. ..+++.|+
T Consensus 137 ~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~----~~~~~~l~~i~~-----~~~~~~~~ 207 (237)
T 3bor_A 137 NVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS----RGFKDQIYEIFQ-----KLNTSIQV 207 (237)
T ss_dssp -----------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHH----TTCHHHHHHHHH-----HSCTTCEE
T ss_pred chHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhc----cCcHHHHHHHHH-----hCCCCCeE
Confidence 11111111112237999999999998 332 2345555555 6666 444433333333 45678999
Q ss_pred EEEeccc--CHHHHHHHhh
Q psy2470 354 IISSATV--DAEEICQFYN 370 (858)
Q Consensus 354 il~SAT~--~~~~~~~~~~ 370 (858)
++||||+ +++.+.+.+.
T Consensus 208 i~~SAT~~~~~~~~~~~~l 226 (237)
T 3bor_A 208 VLLSATMPTDVLEVTKKFM 226 (237)
T ss_dssp EEECSSCCHHHHHHHHHHC
T ss_pred EEEEEecCHHHHHHHHHHC
Confidence 9999999 4566666555
No 83
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.30 E-value=9.9e-13 Score=138.68 Aligned_cols=138 Identities=12% Similarity=0.013 Sum_probs=87.6
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+..... +....++||++|||++|.|+++++.+. +...+.. ++...
T Consensus 85 v~a~TGsGKT-----~~~~~~il~~l~~---------~~~~~~~lil~Ptr~L~~q~~~~~~~~-~~~~~~~---~~~~~ 146 (249)
T 3ber_A 85 GLAETGSGKT-----GAFALPILNALLE---------TPQRLFALVLTPTRELAFQISEQFEAL-GSSIGVQ---SAVIV 146 (249)
T ss_dssp EECCTTSCHH-----HHHHHHHHHHHHH---------SCCSSCEEEECSSHHHHHHHHHHHHHH-HGGGTCC---EEEEC
T ss_pred EEcCCCCCch-----hHhHHHHHHHHhc---------CCCCceEEEEeCCHHHHHHHHHHHHHH-hccCCee---EEEEE
Confidence 4699999999 5555554332111 012346899999999999998877443 2222333 22222
Q ss_pred eccce------eecceeEEEeecCcccc-CCC--ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCC
Q psy2470 286 RKGRM------KILVSKIFKMSQGKPSD-SGV--EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 286 r~~~~------~~~~t~I~v~TpGrLl~-~~~--~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~ 350 (858)
+.... ....++|+|+|||+|++ +.. ...+..+.++ ++++ .++...+.+.+. ..+++
T Consensus 147 g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~----~~~~~~l~~i~~-----~~~~~ 217 (249)
T 3ber_A 147 GGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILN----MDFETEVDKILK-----VIPRD 217 (249)
T ss_dssp TTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHH----TTCHHHHHHHHH-----SSCSS
T ss_pred CCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhc----cChHHHHHHHHH-----hCCCC
Confidence 22111 12457999999999998 433 2346666655 7777 666655555554 56778
Q ss_pred ceEEEEeccc--CHHHHHHHhh
Q psy2470 351 LKLIISSATV--DAEEICQFYN 370 (858)
Q Consensus 351 ~q~il~SAT~--~~~~~~~~~~ 370 (858)
.|+++||||+ +++++++.+.
T Consensus 218 ~~~l~~SAT~~~~v~~~~~~~l 239 (249)
T 3ber_A 218 RKTFLFSATMTKKVQKLQRAAL 239 (249)
T ss_dssp SEEEEEESSCCHHHHHHHHHHC
T ss_pred CeEEEEeccCCHHHHHHHHHHC
Confidence 9999999999 4566666555
No 84
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.29 E-value=1.7e-12 Score=133.98 Aligned_cols=153 Identities=12% Similarity=0.043 Sum_probs=86.0
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeee-eeEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYIS-RGYM 284 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~-vG~~ 284 (858)
+.|+|||||| .++.+|.+... .. ......+|+++|||+++.|+++++.+ ++...+...+. .|..
T Consensus 56 v~~pTGsGKT-----~~~~~~~l~~l----~~-----~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~g~~ 120 (224)
T 1qde_A 56 AQAQSGTGKT-----GTFSIAALQRI----DT-----SVKAPQALMLAPTRELALQIQKVVMA-LAFHMDIKVHACIGGT 120 (224)
T ss_dssp EECCTTSSHH-----HHHHHHHHHHC----CT-----TCCSCCEEEECSSHHHHHHHHHHHHH-HTTTSCCCEEEECC--
T ss_pred EECCCCCcHH-----HHHHHHHHHHH----hc-----cCCCceEEEEECCHHHHHHHHHHHHH-HhcccCceEEEEeCCc
Confidence 4699999999 44444433321 11 11234689999999999999887754 33233332000 2221
Q ss_pred Eeccc-eeecceeEEEeecCcccc-CC-CccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 285 FRKGR-MKILVSKIFKMSQGKPSD-SG-VEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 285 vr~~~-~~~~~t~I~v~TpGrLl~-~~-~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
...+. .....++|+|+|||+|++ +. ....+.++.++ ++++ .++...+.+.+. ..+++.|+++
T Consensus 121 ~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~----~~~~~~l~~i~~-----~~~~~~~~i~ 191 (224)
T 1qde_A 121 SFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLS----SGFKEQIYQIFT-----LLPPTTQVVL 191 (224)
T ss_dssp --------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHH----TTCHHHHHHHHH-----HSCTTCEEEE
T ss_pred chHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhh----hhhHHHHHHHHH-----hCCccCeEEE
Confidence 11111 111348999999999998 33 33345666655 5555 444444444433 4567899999
Q ss_pred EecccC--HHHHHHHhhcccCCCCcEEEecCee
Q psy2470 356 SSATVD--AEEICQFYNISASSNATILSVKGHL 386 (858)
Q Consensus 356 ~SAT~~--~~~~~~~~~~~~~~~~~~i~v~g~~ 386 (858)
||||++ ++.+.+.+.. ++..+.+++..
T Consensus 192 lSAT~~~~~~~~~~~~~~----~p~~i~~~~~~ 220 (224)
T 1qde_A 192 LSATMPNDVLEVTTKFMR----NPVRILVKKDE 220 (224)
T ss_dssp EESSCCHHHHHHHHHHCS----SCEEEC-----
T ss_pred EEeecCHHHHHHHHHHCC----CCEEEEecCCc
Confidence 999994 4556554442 56666665443
No 85
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.24 E-value=3.1e-12 Score=134.80 Aligned_cols=158 Identities=8% Similarity=-0.040 Sum_probs=87.2
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+.....--.............+||++|||+||.|+++++.+. +...+.. ++...
T Consensus 65 ~~a~TGsGKT-----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~~---~~~~~ 135 (253)
T 1wrb_A 65 ACAQTGSGKT-----AAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKF-SLNTPLR---SCVVY 135 (253)
T ss_dssp EECCTTSSHH-----HHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHH-HTTSSCC---EEEEC
T ss_pred EECCCCChHH-----HHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHH-hccCCce---EEEEE
Confidence 4699999999 5555553332111000000000122346899999999999998877543 3333333 22222
Q ss_pred eccce------eecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCC--
Q psy2470 286 RKGRM------KILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRT-- 349 (858)
Q Consensus 286 r~~~~------~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~-- 349 (858)
++.+. ...+++|+|+|||+|++ +.. ...+..+.++ ++++ .++...+.+.+. .+ ..+.
T Consensus 136 g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~----~~~~~~~~~i~~-~~--~~~~~~ 208 (253)
T 1wrb_A 136 GGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLD----MGFEPQIRKIIE-ES--NMPSGI 208 (253)
T ss_dssp SSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHH----TTCHHHHHHHHH-SS--CCCCGG
T ss_pred CCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHh----CchHHHHHHHHh-hc--cCCCCC
Confidence 21111 11357999999999998 433 2345555555 6666 443333322222 11 1222
Q ss_pred CceEEEEeccc--CHHHHHHHhhcccCCCCcEEEec
Q psy2470 350 QLKLIISSATV--DAEEICQFYNISASSNATILSVK 383 (858)
Q Consensus 350 ~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~ 383 (858)
+.|+++||||+ +++.+++.+.. ++..+.+.
T Consensus 209 ~~q~l~~SAT~~~~~~~~~~~~l~----~~~~i~~~ 240 (253)
T 1wrb_A 209 NRQTLMFSATFPKEIQKLAADFLY----NYIFMTVG 240 (253)
T ss_dssp GCEEEEEESSCCHHHHHHHHHHCS----SCEEEEEC
T ss_pred CcEEEEEEEeCCHHHHHHHHHHcC----CCEEEEEC
Confidence 68999999999 45667765553 45555554
No 86
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.24 E-value=1.7e-12 Score=133.72 Aligned_cols=139 Identities=13% Similarity=0.021 Sum_probs=82.9
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCc---CccEeeeee
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCR---MDFEYISRG 282 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~---~g~~~~~vG 282 (858)
+.|+|||||| .++.+|.+... ... .....+||++|||++|.|+++++.+..... .+.. ++
T Consensus 46 v~a~TGsGKT-----~~~~~~~l~~l----~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~---~~ 108 (219)
T 1q0u_A 46 GQSQTGTGKT-----HAYLLPIMEKI----KPE-----RAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIV---AR 108 (219)
T ss_dssp EECCSSHHHH-----HHHHHHHHHHC----CTT-----SCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCC---EE
T ss_pred EECCCCChHH-----HHHHHHHHHHH----HhC-----cCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceE---EE
Confidence 4699999999 55555533321 110 122468999999999999988775543211 0222 22
Q ss_pred EEEeccc------eeecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCC
Q psy2470 283 YMFRKGR------MKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKR 348 (858)
Q Consensus 283 ~~vr~~~------~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~ 348 (858)
...+..+ .....++|+|+|||+|.+ +.. ...+.++.++ ++.+ .++...+.+.+. ..+
T Consensus 109 ~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~----~~~~~~l~~i~~-----~~~ 179 (219)
T 1q0u_A 109 CLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLD----MGFITDVDQIAA-----RMP 179 (219)
T ss_dssp EECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHH----TTCHHHHHHHHH-----TSC
T ss_pred EEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhh----hChHHHHHHHHH-----hCC
Confidence 2222211 112357899999999998 333 2345555555 5555 444333333333 556
Q ss_pred CCceEEEEeccc--CHHHHHHHhh
Q psy2470 349 TQLKLIISSATV--DAEEICQFYN 370 (858)
Q Consensus 349 ~~~q~il~SAT~--~~~~~~~~~~ 370 (858)
++.|+++||||+ ++..+.+.+.
T Consensus 180 ~~~~~l~~SAT~~~~~~~~~~~~~ 203 (219)
T 1q0u_A 180 KDLQMLVFSATIPEKLKPFLKKYM 203 (219)
T ss_dssp TTCEEEEEESCCCGGGHHHHHHHC
T ss_pred cccEEEEEecCCCHHHHHHHHHHc
Confidence 789999999999 4556665554
No 87
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.23 E-value=7.8e-12 Score=127.15 Aligned_cols=138 Identities=9% Similarity=-0.077 Sum_probs=83.8
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcC-ccEeeeeeEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRM-DFEYISRGYM 284 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~-g~~~~~vG~~ 284 (858)
+.|+|||||| .++.+|.+... .. .....++++++|||+++.|+++.+.+.. ... +.. ++..
T Consensus 45 v~apTGsGKT-----~~~~~~~~~~~----~~-----~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~---~~~~ 106 (206)
T 1vec_A 45 ARAKNGTGKS-----GAYLIPLLERL----DL-----KKDNIQAMVIVPTRELALQVSQICIQVS-KHMGGAK---VMAT 106 (206)
T ss_dssp EECCSSSTTH-----HHHHHHHHHHC----CT-----TSCSCCEEEECSCHHHHHHHHHHHHHHT-TTSSSCC---EEEE
T ss_pred EECCCCCchH-----HHHHHHHHHHh----cc-----cCCCeeEEEEeCcHHHHHHHHHHHHHHH-hhcCCce---EEEE
Confidence 4699999999 44444433311 11 1123468999999999999988875443 222 333 3322
Q ss_pred Eeccce------eecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCC
Q psy2470 285 FRKGRM------KILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 285 vr~~~~------~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~ 350 (858)
.+.... ....++|+|+|||+|.+ +.. ...+.++.++ ++++ .++...+.+.+. ..+++
T Consensus 107 ~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~----~~~~~~l~~i~~-----~~~~~ 177 (206)
T 1vec_A 107 TGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLS----QDFVQIMEDIIL-----TLPKN 177 (206)
T ss_dssp CSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTS----TTTHHHHHHHHH-----HSCTT
T ss_pred eCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHh----hCcHHHHHHHHH-----hCCcc
Confidence 222211 12357899999999988 333 2345566555 6666 555443333333 45668
Q ss_pred ceEEEEeccc--CHHHHHHHhh
Q psy2470 351 LKLIISSATV--DAEEICQFYN 370 (858)
Q Consensus 351 ~q~il~SAT~--~~~~~~~~~~ 370 (858)
.|+++||||+ ++..+.+.+.
T Consensus 178 ~~~l~~SAT~~~~~~~~~~~~l 199 (206)
T 1vec_A 178 RQILLYSATFPLSVQKFMNSHL 199 (206)
T ss_dssp CEEEEEESCCCHHHHHHHHHHC
T ss_pred ceEEEEEeeCCHHHHHHHHHHc
Confidence 9999999999 4455555444
No 88
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.20 E-value=3.5e-12 Score=131.36 Aligned_cols=140 Identities=10% Similarity=0.029 Sum_probs=81.1
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+||||||+ ++.+|.+... .. .....++||++|||+++.|+++++.+.....-+.. ++...
T Consensus 56 i~~~TGsGKT~-----~~~~~~~~~~----~~-----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~---v~~~~ 118 (220)
T 1t6n_A 56 CQAKSGMGKTA-----VFVLATLQQL----EP-----VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVK---VAVFF 118 (220)
T ss_dssp EECCTTSCHHH-----HHHHHHHHHC----CC-----CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCC---EEEES
T ss_pred EECCCCCchhh-----hhhHHHHHhh----hc-----cCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCce---EEEEe
Confidence 46999999994 4444433211 11 11223689999999999999888754432111333 33222
Q ss_pred eccce-------eecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCC
Q psy2470 286 RKGRM-------KILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 286 r~~~~-------~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~ 350 (858)
+..+. ....++|+|+|||++++ +.. ...+.++.++ ++++ . .++...+...+ ...+++
T Consensus 119 g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~----~---~~~~~~~~~i~-~~~~~~ 190 (220)
T 1t6n_A 119 GGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE----Q---LDMRRDVQEIF-RMTPHE 190 (220)
T ss_dssp CCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHS----S---HHHHHHHHHHH-HTSCSS
T ss_pred CCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhc----c---cCcHHHHHHHH-HhCCCc
Confidence 21111 11246999999999998 332 2345666655 4443 2 12223322111 245668
Q ss_pred ceEEEEeccc--CHHHHHHHhh
Q psy2470 351 LKLIISSATV--DAEEICQFYN 370 (858)
Q Consensus 351 ~q~il~SAT~--~~~~~~~~~~ 370 (858)
.|+++||||+ +.+.+.+.+.
T Consensus 191 ~~~i~~SAT~~~~~~~~~~~~~ 212 (220)
T 1t6n_A 191 KQVMMFSATLSKEIRPVCRKFM 212 (220)
T ss_dssp SEEEEEESCCCTTTHHHHHTTC
T ss_pred CeEEEEEeecCHHHHHHHHHHc
Confidence 9999999999 5667776555
No 89
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.18 E-value=7.1e-12 Score=130.25 Aligned_cols=130 Identities=8% Similarity=-0.009 Sum_probs=78.1
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcC-ccEeeeeeEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRM-DFEYISRGYM 284 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~-g~~~~~vG~~ 284 (858)
+.|+|||||| .++.+|.+.... .. ....++||++|||+++.|+++++.+. +... +.. ++..
T Consensus 66 ~~a~TGsGKT-----~~~~l~~l~~l~----~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~~~---~~~~ 127 (230)
T 2oxc_A 66 VQAKSGTGKT-----CVFSTIALDSLV----LE-----NLSTQILILAPTREIAVQIHSVITAI-GIKMEGLE---CHVF 127 (230)
T ss_dssp EECCTTSSHH-----HHHHHHHHHHCC----TT-----SCSCCEEEECSSHHHHHHHHHHHHHH-TTTSTTCC---EEEE
T ss_pred EECCCCCcHH-----HHHHHHHHHHHH----hc-----CCCceEEEEeCCHHHHHHHHHHHHHH-hcccCCce---EEEE
Confidence 4699999999 444454333111 11 12246899999999999999888544 3222 333 3322
Q ss_pred Eeccce-----eecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCch-hhhhHHHHHHHHhcccCCCC
Q psy2470 285 FRKGRM-----KILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQD-VIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 285 vr~~~~-----~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d-~ll~~lk~~~~~l~~~~~~~ 350 (858)
.+.... ....++|+|+|||+|++ +.. ...+.++.++ ++++ .+ +...+.+.+. ..+++
T Consensus 128 ~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~----~~~~~~~~~~i~~-----~~~~~ 198 (230)
T 2oxc_A 128 IGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLE----EGSFQEQINWIYS-----SLPAS 198 (230)
T ss_dssp CTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHS----TTSSHHHHHHHHH-----HSCSS
T ss_pred eCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhc----CcchHHHHHHHHH-----hCCCC
Confidence 222111 11357999999999998 332 2345565554 6666 43 3322222222 45668
Q ss_pred ceEEEEecccCH
Q psy2470 351 LKLIISSATVDA 362 (858)
Q Consensus 351 ~q~il~SAT~~~ 362 (858)
.|+++||||++.
T Consensus 199 ~~~l~lSAT~~~ 210 (230)
T 2oxc_A 199 KQMLAVSATYPE 210 (230)
T ss_dssp CEEEEEESCCCH
T ss_pred CeEEEEEeccCH
Confidence 899999999953
No 90
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.18 E-value=1.4e-11 Score=125.37 Aligned_cols=144 Identities=13% Similarity=0.031 Sum_probs=83.8
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCC-cCccEeeeeeEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGC-RMDFEYISRGYM 284 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~-~~g~~~~~vG~~ 284 (858)
+.|+|||||| .++.+|.+..... ... ......+|+++|||+++.|+++++.+..+. +++..+++..+.
T Consensus 43 i~~~TGsGKT-----~~~~~~~~~~l~~---~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~ 111 (207)
T 2gxq_A 43 GQARTGTGKT-----LAFALPIAERLAP---SQE---RGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYG 111 (207)
T ss_dssp EECCTTSCHH-----HHHHHHHHHHCCC---CCC---TTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSH
T ss_pred EECCCCChHH-----HHHHHHHHHHHhh---ccc---cCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChH
Confidence 4699999999 4444443221110 001 112346899999999999999988665432 222221111100
Q ss_pred EeccceeecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 285 FRKGRMKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 285 vr~~~~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
.. ......+++|+|+|||++++ +.. ...+.++.++ ++++ .++...+.+.+. ..+++.|+++|
T Consensus 112 ~~-~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~----~~~~~~~~~i~~-----~~~~~~~~i~~ 181 (207)
T 2gxq_A 112 KQ-KEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLS----MGFEEEVEALLS-----ATPPSRQTLLF 181 (207)
T ss_dssp HH-HHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHH----TTCHHHHHHHHH-----TSCTTSEEEEE
T ss_pred HH-HHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhc----cchHHHHHHHHH-----hCCccCeEEEE
Confidence 00 00111357999999999988 332 3345666655 5556 444333333333 55678999999
Q ss_pred ecccC--HHHHHHHhh
Q psy2470 357 SATVD--AEEICQFYN 370 (858)
Q Consensus 357 SAT~~--~~~~~~~~~ 370 (858)
|||++ ++.+.+.+.
T Consensus 182 SAT~~~~~~~~~~~~~ 197 (207)
T 2gxq_A 182 SATLPSWAKRLAERYM 197 (207)
T ss_dssp CSSCCHHHHHHHHHHC
T ss_pred EEecCHHHHHHHHHHc
Confidence 99994 566776655
No 91
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.04 E-value=1.7e-10 Score=135.13 Aligned_cols=132 Identities=14% Similarity=0.093 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEE--
Q psy2470 403 QGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVI-- 480 (858)
Q Consensus 403 ~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlv-- 480 (858)
+...+.+..+... .+|.+|||+|+....+.+++.|... . + ..+|.. .+|.++++.|++|. .|++
T Consensus 370 ~~~~~~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~~-------~--~-~~q~~~--~~~~~~l~~f~~~~-~il~~V 435 (540)
T 2vl7_A 370 PIYSILLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSGI-------P--V-IEENKK--TRHEEVLELMKTGK-YLVMLV 435 (540)
T ss_dssp HHHHHHHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTTS-------C--E-EESTTT--CCHHHHHHHHHTSC-CEEEEE
T ss_pred HHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhccC-------c--e-EecCCC--CcHHHHHHHHhcCC-eEEEEE
Confidence 3445555666554 4788999999999999998877532 2 2 235543 45777888887654 5666
Q ss_pred ecCcccccCCCCC----eeEEEcCCCccceeccCC-------------CCCCcceeeecCHhhHHHhhcccCCCCC--ce
Q psy2470 481 ATNIAETSITIPG----IVYVIDPGFVKARWFNPN-------------TLTNSLVVVPISKASAVQRAGRAGRVRS--GH 541 (858)
Q Consensus 481 ATdvAergldIp~----V~~VId~g~~k~~~yd~~-------------~g~~~l~~~pis~~~~~qR~GRaGR~g~--G~ 541 (858)
+|+.+..|||+|| +++||..|+|....-|+. .+...+ ..|...-...|-+||.-|... |.
T Consensus 436 ~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Q~~GR~iR~~~D~g~ 514 (540)
T 2vl7_A 436 MRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSI-IHDLTAIVIKQTIGRAFRDPNDYVK 514 (540)
T ss_dssp C---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHH-HHHHHHHHHHHHHHHHCCSTTCCCE
T ss_pred ecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHH-HHHHHHHHHHHHhCCcccCCCccEE
Confidence 8999999999998 999999999865432221 111111 122335667899999999754 87
Q ss_pred EEEehhhH
Q psy2470 542 VYRKNFMY 549 (858)
Q Consensus 542 ~~rL~~~~ 549 (858)
.+-+=..|
T Consensus 515 v~llD~R~ 522 (540)
T 2vl7_A 515 IYLCDSRY 522 (540)
T ss_dssp EEEESGGG
T ss_pred EEEEcccc
Confidence 66443444
No 92
>3c0t_A Mediator of RNA polymerase II transcription subunit 18; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=98.61 E-value=4.1e-09 Score=103.83 Aligned_cols=178 Identities=17% Similarity=0.232 Sum_probs=116.2
Q ss_pred HHhhcccccchHHHHHHHhhhhhcccccCCCCcccccccchhccCCCChhHH--------HHHHHhc---CCCCccccch
Q psy2470 137 VLLSSGSVLDSAVEILLHRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLL--------LRVRRAL---DFPDMPYQLR 205 (858)
Q Consensus 137 ~l~~s~s~~~~~~~~~~~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~--------~~~~~~~---~~~~~~~~~~ 205 (858)
.+++.||+.+...+++.+||+|+| ++ |++|+||+|+| ++.. .+.. .|++|.+ +..|..|
T Consensus 3 E~lL~gsV~~~~~~~ll~~L~GL~--m~--P~~~le~~mvf--k~~~-~P~~~~r~ggsy~rv~~~v~~~~~~d~~~--- 72 (207)
T 3c0t_A 3 ELYLLGVVPSRRFEAVVNSLSKTL--DG--PKTILEFWVVY--RPKD-VPPNLPRQPDSWLRLCSNIESHDETDTEW--- 72 (207)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHHS--EE--EEEEEEEEEEE--EEC-------CCCGGGSEEEEEEGGGSCTTCTTG---
T ss_pred eEEEEeecchhHHHHHHHHHhhcc--cC--CeeeeEEEEEe--ccCC-CCcccCCCCCceEEEEeeccccccccccc---
Confidence 467789999999999999999999 55 99999999999 4433 3433 5666666 4433111
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchH-HHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSID-VACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR-~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
.+..+|.++|.+++|+| +++.++++.... .+...-.-.+.+++|.+...+|+.-||.
T Consensus 73 -------------------~~~~~W~lr~~g~pEa~---~~~~~~~R~~~~a~~~sgdv~~fl~~lG~~~~~EYv~~G~~ 130 (207)
T 3c0t_A 73 -------------------SKNTQWSMYLEGNSEPK---REDKCGIRPVNRAKLTNGSVTEFVEKMGYEFSHEYIIQGLE 130 (207)
T ss_dssp -------------------GGSSCEEEEEECCCCSS---CTTSCEEEEEEEEEECSSCHHHHHHHTTEEEEEEEEEEEEE
T ss_pred -------------------ccCCceEEEEcCCCcCC---CcCceEEEEeecccccCCCHHHHHHHhCcceEEEEEEeeeE
Confidence 23456777788998874 333456665544 4455555667899999999999999999
Q ss_pred EeccceeecceeEEEee-cCc-cccCCCccC--CCcccEEEecCCCCCchh-----hhhHHHHHHHHhcccCC
Q psy2470 285 FRKGRMKILVSKIFKMS-QGK-PSDSGVEPI--SQSYLVELSILAPGGQDV-----IGEDMKAFAEQLKPLKR 348 (858)
Q Consensus 285 vr~~~~~~~~t~I~v~T-pGr-Ll~~~~~~~--L~~~~vlR~l~~~~~~d~-----ll~~lk~~~~~l~~~~~ 348 (858)
.+..+.+..-.+|.... |.. +..+. +. -.+|-+--++.+++++|. .-.-++.+.++|++...
T Consensus 131 f~~g~~kI~l~ril~~~~p~~~~pp~~--pLd~S~sylle~sv~v~d~~d~~~m~~~~~~L~~f~eqLk~~V~ 201 (207)
T 3c0t_A 131 YFFFDTTVRIYQTLIPSQQRSIKPPFH--PMNEEQPWILHVYTHVADASNQVAMAKAEANLTKVKTLLSAFCD 201 (207)
T ss_dssp EEETTEEEEEEEEEEESSTTCCSSCEE--ESSTTCCEEEEEEEEESCTTCHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred EEeCCEEEEEEeeecCCCCCccCCCcc--ccccCcceEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99998887666777632 222 11100 11 113332244445556666 35566777778876543
No 93
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.39 E-value=2.6e-08 Score=101.32 Aligned_cols=140 Identities=10% Similarity=-0.109 Sum_probs=69.3
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHH-HHHHHHHHhCC--cCccEeee
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSC-TVVEFLTEMGC--RMDFEYIS 280 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~q-va~~v~~e~g~--~~g~~~~~ 280 (858)
+-+.|+||||||++++.++... .... ... ....++|+++|+++++.| ..+.+.+..+. .++..+++
T Consensus 51 ~li~~~tGsGKT~~~~~~~~~~-----~~~~---~~~---~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~ 119 (216)
T 3b6e_A 51 IIICLPTGSGKTRVAVYIAKDH-----LDKK---KKA---SEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGD 119 (216)
T ss_dssp EEEECSCHHHHHHHHHHHHHHH-----HHHH---HHT---TCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC-
T ss_pred EEEEcCCCCCHHHHHHHHHHHH-----Hhhc---ccc---cCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCC
Confidence 3457999999994444433221 1000 000 112358999999999999 55555443332 32222111
Q ss_pred eeEEEeccceeecceeEEEeecCcccc-CCCc-------cCCCcccEE------EecCCCCCchhhhhHHHHHHHHhccc
Q psy2470 281 RGYMFRKGRMKILVSKIFKMSQGKPSD-SGVE-------PISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPL 346 (858)
Q Consensus 281 vG~~vr~~~~~~~~t~I~v~TpGrLl~-~~~~-------~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~ 346 (858)
.....+.. .....++|+|+||++|.+ +... ..+.++.+| ++.+ .++...+++.+.....+.
T Consensus 120 ~~~~~~~~-~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~----~~~~~~~~~~~~~~~~~~ 194 (216)
T 3b6e_A 120 TQLKISFP-EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK----EAVYNNIMRHYLMQKLKN 194 (216)
T ss_dssp --CCCCHH-HHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----------CHHHHHHHHHHHHHHH
T ss_pred cccchhHH-hhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc----CCcHHHHHHHHHHHhccc
Confidence 11100000 111348999999999988 3322 345566555 5555 344444443332111000
Q ss_pred ---------CCCCceEEEEecc
Q psy2470 347 ---------KRTQLKLIISSAT 359 (858)
Q Consensus 347 ---------~~~~~q~il~SAT 359 (858)
..+..|+++||||
T Consensus 195 ~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 195 NRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHTTCCCCCCCEEEEEECC
T ss_pred ccccccccCCCCcceEEEeecC
Confidence 1257899999998
No 94
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.38 E-value=5.1e-08 Score=118.09 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=81.4
Q ss_pred ccceeeccCHHH-Hhcccc---CCCcccccCChhH------HHHHHHHcC-C---CCCCC---CCCCC-CCCHHHHHHHH
Q psy2470 41 SRKFSRLYTEAS-FSQLNE---CTPPEMQRTELSS------AVLQLKALG-I---HNILR---FSFPS-PPPAQNLRVAL 102 (858)
Q Consensus 41 ~g~c~rLy~~~~-~~~~~~---~~~pei~r~~l~~------~~L~lk~lg-~---~~~~~---f~~~~-~P~~~~l~~a~ 102 (858)
+|+||++|++++ ++.+.+ .+.||+++++|.+ .+|.++++| + +++.. ..|+. +|+...+.+|+
T Consensus 398 ~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al 477 (715)
T 2va8_A 398 IGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAI 477 (715)
T ss_dssp CEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred CceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHH
Confidence 899999998876 433222 5789999999876 678888888 3 23333 25554 55667899999
Q ss_pred HHHHhcCccccCC---CcchHHHhhhhcCCCCchhhhHHhhcccc
Q psy2470 103 ELLYSLGAMDVNG---NLTKPVGETMAEMPLHPIHAKVLLSSGSV 144 (858)
Q Consensus 103 ~~L~~l~ald~~~---~lt~~lG~~ma~lp~~p~~~~~l~~s~s~ 144 (858)
+.|..+|++|.++ .+| ++|+.||.+|++|+.++|++.+-+.
T Consensus 478 ~~L~~~g~i~~~~~~~~~t-~lG~~~~~~~~~~~~~~~~~~~~~~ 521 (715)
T 2va8_A 478 RWLLEHSFIKEEGNTFALT-NFGKRVADLYINPFTADIIRKGLEG 521 (715)
T ss_dssp HHHHHTTSEEECSSEEEEC-HHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHCcCEeecCCeEeeC-hHHHHHHHHcCCHhHHHHHHHHhhh
Confidence 9999999999875 799 7999999999999999999865544
No 95
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.36 E-value=1.6e-07 Score=100.28 Aligned_cols=121 Identities=6% Similarity=-0.136 Sum_probs=71.3
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+||||||++++.++... + ..+ . .++|+++||++++.|..+++.+. +...+.. ++...
T Consensus 133 l~~~tGsGKT~~~~~~~~~~---------~---~~~--~--~~~lil~Pt~~L~~q~~~~l~~~-~~~~~~~---~~~~~ 192 (282)
T 1rif_A 133 LNLPTSAGRSLIQALLARYY---------L---ENY--E--GKILIIVPTTALTTQMADDFVDY-RLFSHAM---IKKIG 192 (282)
T ss_dssp ECCCTTSCHHHHHHHHHHHH---------H---HHC--S--SEEEEECSSHHHHHHHHHHHHHH-TSCCGGG---EEECS
T ss_pred EEcCCCCCcHHHHHHHHHHH---------H---HcC--C--CeEEEEECCHHHHHHHHHHHHHh-cccccce---EEEEe
Confidence 47999999994443332211 1 111 1 14799999999999999988654 4333333 22211
Q ss_pred eccce---eecceeEEEeecCccccCCCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 286 RKGRM---KILVSKIFKMSQGKPSDSGVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 286 r~~~~---~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
.+... .....+|+|+|||++.+.. ...+.++.++ ++.+ ..+.+.+ ...++..|+++|
T Consensus 193 ~~~~~~~~~~~~~~I~v~T~~~l~~~~-~~~~~~~~~vIiDEaH~~~~--------~~~~~il-----~~~~~~~~~l~l 258 (282)
T 1rif_A 193 GGASKDDKYKNDAPVVVGTWQTVVKQP-KEWFSQFGMMMNDECHLATG--------KSISSII-----SGLNNCMFKFGL 258 (282)
T ss_dssp TTCSSTTCCCTTCSEEEECHHHHTTSC-GGGGGGEEEEEEETGGGCCH--------HHHHHHT-----TTCTTCCEEEEE
T ss_pred CCCcchhhhccCCcEEEEchHHHHhhH-HHHHhhCCEEEEECCccCCc--------ccHHHHH-----HHhhcCCeEEEE
Confidence 22111 1145899999999998731 2344555555 3332 1222222 244567899999
Q ss_pred eccc
Q psy2470 357 SATV 360 (858)
Q Consensus 357 SAT~ 360 (858)
|||+
T Consensus 259 SATp 262 (282)
T 1rif_A 259 SGSL 262 (282)
T ss_dssp CSSC
T ss_pred eCCC
Confidence 9999
No 96
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.33 E-value=2.6e-06 Score=99.97 Aligned_cols=133 Identities=13% Similarity=0.091 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEe
Q psy2470 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIA 481 (858)
Q Consensus 402 ~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvA 481 (858)
.+...+.+..+.... +|.+|||+|+....+.+++. . +..++.=..+++.++..+.|+ +++ .-|++|
T Consensus 378 ~~~l~~~i~~l~~~~-~g~~lvlF~Sy~~l~~v~~~---~-------~~~v~~q~~~~~~~~~~~~~~--~~~-~~vl~~ 443 (551)
T 3crv_A 378 WKRYADYLLKIYFQA-KANVLVVFPSYEIMDRVMSR---I-------SLPKYVESEDSSVEDLYSAIS--ANN-KVLIGS 443 (551)
T ss_dssp HHHHHHHHHHHHHHC-SSEEEEEESCHHHHHHHHTT---C-------CSSEEECCSSCCHHHHHHHTT--SSS-SCEEEE
T ss_pred HHHHHHHHHHHHHhC-CCCEEEEecCHHHHHHHHHh---c-------CCcEEEcCCCCCHHHHHHHHH--hcC-CeEEEE
Confidence 455666666666553 67899999999999888862 1 333333223556666666665 233 379999
Q ss_pred c--CcccccCCCC---C--eeEEEcCCCcccee----------ccCCCCCCcc---eeeecCHhhHHHhhcccCCCCC--
Q psy2470 482 T--NIAETSITIP---G--IVYVIDPGFVKARW----------FNPNTLTNSL---VVVPISKASAVQRAGRAGRVRS-- 539 (858)
Q Consensus 482 T--dvAergldIp---~--V~~VId~g~~k~~~----------yd~~~g~~~l---~~~pis~~~~~qR~GRaGR~g~-- 539 (858)
| .-..-|||+| | .+.||=.|+|.... |+...|.+.. ...| -.-...|=+||.=|...
T Consensus 444 v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~ 522 (551)
T 3crv_A 444 VGKGKLAEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVNDK 522 (551)
T ss_dssp ESSCCSCCSSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTCE
T ss_pred EecceecccccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCcc
Confidence 8 5677799999 3 67777667765432 2212233121 2344 55567788999988764
Q ss_pred ceEEEehhhH
Q psy2470 540 GHVYRKNFMY 549 (858)
Q Consensus 540 G~~~rL~~~~ 549 (858)
|..+-+=..|
T Consensus 523 G~v~llD~R~ 532 (551)
T 3crv_A 523 CNVWLLDKRF 532 (551)
T ss_dssp EEEEEESGGG
T ss_pred EEEEEeehhc
Confidence 7666543333
No 97
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.32 E-value=1.8e-07 Score=113.15 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=84.5
Q ss_pred cccceeeccCHHHHhcccc---CCCcccccCChhH------HHHHHHHcC-CCC---CCC---CCCC----CCCCHHHHH
Q psy2470 40 CSRKFSRLYTEASFSQLNE---CTPPEMQRTELSS------AVLQLKALG-IHN---ILR---FSFP----SPPPAQNLR 99 (858)
Q Consensus 40 ~~g~c~rLy~~~~~~~~~~---~~~pei~r~~l~~------~~L~lk~lg-~~~---~~~---f~~~----~~P~~~~l~ 99 (858)
.+|+||++|++++++.+.+ .+.||+.+++|.+ .+|.+.++| +.+ +.. ..|+ ++|+.+.+.
T Consensus 377 ~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~ 456 (702)
T 2p6r_A 377 ERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELE 456 (702)
T ss_dssp SCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHH
T ss_pred CCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHH
Confidence 3899999999988765433 5789999999876 667788888 322 222 2343 378999999
Q ss_pred HHHHHHHhcCccccC--CCcchHHHhhhhcCCCCchhhhHHhhcccc
Q psy2470 100 VALELLYSLGAMDVN--GNLTKPVGETMAEMPLHPIHAKVLLSSGSV 144 (858)
Q Consensus 100 ~a~~~L~~l~ald~~--~~lt~~lG~~ma~lp~~p~~~~~l~~s~s~ 144 (858)
+|++.|..+|+++.+ +.+| ++|+.||.+|++|..+++++.+-+.
T Consensus 457 ~al~~L~~~g~i~~~~~~~~t-~lG~~~~~~~~~~~~~~~~~~~~~~ 502 (702)
T 2p6r_A 457 RVVRQLENWGMVVEAAHLAPT-KLGSLVSRLYIDPLTGFIFHDVLSR 502 (702)
T ss_dssp HHHHHHHHTTSEEESSSEEEC-HHHHHHHHTTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHCcCeeECCeeccC-hHHHHHHHHhCCHHHHHHHHHHhhc
Confidence 999999999999987 7899 7999999999999999999876555
No 98
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.77 E-value=1.3e-05 Score=83.28 Aligned_cols=111 Identities=7% Similarity=-0.055 Sum_probs=67.3
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCc-CccEeeeee
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCR-MDFEYISRG 282 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~-~g~~~~~vG 282 (858)
.-+.|+||+|||.+++.++..+ ..++++++|+++++.|..+++.+ ++.. ++.. .|
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~--------------------~~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~~---~g 166 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL--------------------STPTLIVVPTLALAEQWKERLGI-FGEEYVGEF---SG 166 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS--------------------CSCEEEEESSHHHHHHHHHHHGG-GCGGGEEEE---SS
T ss_pred EEEEeCCCCCHHHHHHHHHHHc--------------------CCCEEEEeCCHHHHHHHHHHHHh-CCCCeEEEE---eC
Confidence 5568999999995544433221 12579999999999999888866 6554 3322 11
Q ss_pred EEEeccceeecceeEEEeecCccccCCCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 283 YMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 283 ~~vr~~~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
.. ....+|+|+|++++...... ....+.+| +..+ ..+. .+. ..-+..+++++
T Consensus 167 ----~~---~~~~~i~v~T~~~l~~~~~~-~~~~~~llIiDEaH~l~~--------~~~~-~i~-----~~~~~~~~l~L 224 (237)
T 2fz4_A 167 ----RI---KELKPLTVSTYDSAYVNAEK-LGNRFMLLIFDEVHHLPA--------ESYV-QIA-----QMSIAPFRLGL 224 (237)
T ss_dssp ----SC---BCCCSEEEEEHHHHHHTHHH-HTTTCSEEEEECSSCCCT--------TTHH-HHH-----HTCCCSEEEEE
T ss_pred ----CC---CCcCCEEEEeHHHHHhhHHH-hcccCCEEEEECCccCCC--------hHHH-HHH-----HhccCCEEEEE
Confidence 11 12478999999998772211 11234444 3333 1222 233 12235788999
Q ss_pred eccc
Q psy2470 357 SATV 360 (858)
Q Consensus 357 SAT~ 360 (858)
|||.
T Consensus 225 SATp 228 (237)
T 2fz4_A 225 TATF 228 (237)
T ss_dssp EESC
T ss_pred ecCC
Confidence 9998
No 99
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=97.75 E-value=3.9e-06 Score=101.66 Aligned_cols=104 Identities=16% Similarity=0.071 Sum_probs=75.8
Q ss_pred cccceeeccCHHHHh----ccccCCCcccccC-----ChhHHHHHHHHcCC-------CCCCCCCCC------CCCCHHH
Q psy2470 40 CSRKFSRLYTEASFS----QLNECTPPEMQRT-----ELSSAVLQLKALGI-------HNILRFSFP------SPPPAQN 97 (858)
Q Consensus 40 ~~g~c~rLy~~~~~~----~~~~~~~pei~r~-----~l~~~~L~lk~lg~-------~~~~~f~~~------~~P~~~~ 97 (858)
.+|+||++|+++.++ .+....+|+|... +|...++.+.+.|. .+...+.|+ ++|..+.
T Consensus 376 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 455 (720)
T 2zj8_A 376 EVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEK 455 (720)
T ss_dssp SEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHH
T ss_pred CCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHH
Confidence 378999999987643 4554555555544 45556677777763 222334554 3444578
Q ss_pred HHHHHHHHHhcCccc-cCC---CcchHHHhhhhcCCCCchhhhHHhhcccc
Q psy2470 98 LRVALELLYSLGAMD-VNG---NLTKPVGETMAEMPLHPIHAKVLLSSGSV 144 (858)
Q Consensus 98 l~~a~~~L~~l~ald-~~~---~lt~~lG~~ma~lp~~p~~~~~l~~s~s~ 144 (858)
+.+|++.|..+|+++ +++ .+| ++|+.||.+|++|..+++++.+-+.
T Consensus 456 ~~~~l~~L~~~~~i~~~~~~~~~~t-~lG~~~~~~~~~~~~~~~~~~~~~~ 505 (720)
T 2zj8_A 456 IRNILYFLLENEFIEISLEDKIRPL-SLGIRTAKLYIDPYTAKMFKDKMEE 505 (720)
T ss_dssp HHHHHHHHHHTTSEEECTTSCEEEC-HHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeeECCCCcEeeC-hHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999998 666 699 7999999999999999999865433
No 100
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=96.36 E-value=0.00019 Score=77.21 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=61.8
Q ss_pred ccceeeccCHHH--------------HhccccCCCcccccCChhHHHHHHHHcCCCCCCCC-----CCCCCCCHHHHHHH
Q psy2470 41 SRKFSRLYTEAS--------------FSQLNECTPPEMQRTELSSAVLQLKALGIHNILRF-----SFPSPPPAQNLRVA 101 (858)
Q Consensus 41 ~g~c~rLy~~~~--------------~~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f-----~~~~~P~~~~l~~a 101 (858)
+|+||.+|++++ ++.+...+.|||++.++..+++++++++.+++..| +|+++|+.+.+..|
T Consensus 125 ~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaa 204 (300)
T 3i32_A 125 GGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAAL 204 (300)
T ss_dssp -CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHH
T ss_pred CceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHH
Confidence 899999999877 55677788899999999999999999998888888 68899999999999
Q ss_pred HHHHHhcCc
Q psy2470 102 LELLYSLGA 110 (858)
Q Consensus 102 ~~~L~~l~a 110 (858)
+..|+....
T Consensus 205 l~~l~~~~~ 213 (300)
T 3i32_A 205 LALLLGGAP 213 (300)
T ss_dssp HHHHHTCCC
T ss_pred HHHHhcCCc
Confidence 999977665
No 101
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.34 E-value=0.0016 Score=67.18 Aligned_cols=69 Identities=32% Similarity=0.629 Sum_probs=54.5
Q ss_pred hcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHHh
Q psy2470 625 TLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILK 695 (858)
Q Consensus 625 ~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~ 695 (858)
.+|..+||.+++++.....-+.|.++|.|+++..+-- .+.+++++|+||+|+|+.+.|+.+..++.++.
T Consensus 136 ~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~ 204 (235)
T 3llm_A 136 EPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQ 204 (235)
T ss_dssp CTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred ccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHh
Confidence 4566778877643322112367999999999988754 48899999999999999999999999999887
No 102
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.26 E-value=0.022 Score=67.36 Aligned_cols=183 Identities=12% Similarity=0.081 Sum_probs=101.2
Q ss_pred CceEEEEeccc-CHHHHHHHhhcccCCCCcEEEecCe--ecceeEEEecCC-------ccchHHHHHHHHHHHHhhCCCC
Q psy2470 350 QLKLIISSATV-DAEEICQFYNISASSNATILSVKGH--LYPVSVYYSNDP-------VVNYVQGVVDTAIKIHESMPVG 419 (858)
Q Consensus 350 ~~q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~--~~~v~~~~~~~~-------~~~~~~~~~~~l~~i~~~~~~g 419 (858)
...+|++|||+ ..+.|.+.++- +...+.++.. ......++.... ...+.....+.+..+.... +|
T Consensus 375 ~~~~il~SaTL~p~~~~~~~lGl----~~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~-~g 449 (620)
T 4a15_A 375 ESKTIHMSGTLDPFDFYSDITGF----EIPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKV-KK 449 (620)
T ss_dssp GSEEEEEESSCCSHHHHHHHHCC----CCCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHH-CS
T ss_pred CCeEEEEccCCCcHHHHHHHhCC----CceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhC-CC
Confidence 35789999999 55666666653 1222222211 001112222111 1122344455566666543 67
Q ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC--cccccCCCCC--ee
Q psy2470 420 DILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN--IAETSITIPG--IV 495 (858)
Q Consensus 420 ~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd--vAergldIp~--V~ 495 (858)
.+|||+|+....+.+++.|+.. +.. ..-+++..++..+++.|+ +.-.|+++|. -..-|||+|| .+
T Consensus 450 ~~lvlF~Sy~~l~~v~~~l~~~-------~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~ 518 (620)
T 4a15_A 450 NTIVYFPSYSLMDRVENRVSFE-------HMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELE 518 (620)
T ss_dssp CEEEEESCHHHHHHHTSSCCSC-------CEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCC
T ss_pred CEEEEeCCHHHHHHHHHHHHhc-------chh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceE
Confidence 8999999999999888877511 222 445566678889999998 8888999974 7777999996 45
Q ss_pred EEEcCCCcccee----------ccCC--CCCCcceeeecCHhhHHHhhcccCCCCC--ceEEEehhhH
Q psy2470 496 YVIDPGFVKARW----------FNPN--TLTNSLVVVPISKASAVQRAGRAGRVRS--GHVYRKNFMY 549 (858)
Q Consensus 496 ~VId~g~~k~~~----------yd~~--~g~~~l~~~pis~~~~~qR~GRaGR~g~--G~~~rL~~~~ 549 (858)
.||=.|+|-..- |+.. .+...-...| ..-...|=+||.=|... |..+-+=..|
T Consensus 519 ~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~llD~R~ 585 (620)
T 4a15_A 519 MIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDTGACVILDKRA 585 (620)
T ss_dssp EEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCCEEEEEECGGG
T ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCceEEEEEEccch
Confidence 666667764321 1111 1110001134 34556799999988654 8766554555
No 103
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=95.67 E-value=0.00083 Score=68.29 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=57.0
Q ss_pred cccceeeccCHHH--------------HhccccCCCcccccCChhHHHHHHHHcCCCCCCCC-----CCCCCCCHHHHHH
Q psy2470 40 CSRKFSRLYTEAS--------------FSQLNECTPPEMQRTELSSAVLQLKALGIHNILRF-----SFPSPPPAQNLRV 100 (858)
Q Consensus 40 ~~g~c~rLy~~~~--------------~~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f-----~~~~~P~~~~l~~ 100 (858)
.+|+||.+|++++ +..+...+.|||.+.++..++++++.++.++...| +|+++|+++++..
T Consensus 127 ~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~ 206 (212)
T 3eaq_A 127 RGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAA 206 (212)
T ss_dssp --BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHH
T ss_pred CCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHH
Confidence 3899999999887 55677788899999999999999999999887777 7899999999999
Q ss_pred HHHHH
Q psy2470 101 ALELL 105 (858)
Q Consensus 101 a~~~L 105 (858)
|+..|
T Consensus 207 al~~l 211 (212)
T 3eaq_A 207 LLALL 211 (212)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98766
No 104
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=92.60 E-value=0.024 Score=67.02 Aligned_cols=49 Identities=6% Similarity=-0.058 Sum_probs=35.2
Q ss_pred cchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHH
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFL 267 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~ 267 (858)
.+-+.|+|||||| .|+++|.+.+... . ..++++++||++++.|+.+.+.
T Consensus 24 ~~~~~apTGtGKT-----~a~l~p~l~~~~~------~-----~~kvli~t~T~~l~~Qi~~el~ 72 (620)
T 4a15_A 24 GVALESPTGSGKT-----IMALKSALQYSSE------R-----KLKVLYLVRTNSQEEQVIKELR 72 (620)
T ss_dssp EEEEECCTTSCHH-----HHHHHHHHHHHHH------H-----TCEEEEEESSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHH-----HHHHHHHHHhhhh------c-----CCeEEEECCCHHHHHHHHHHHH
Confidence 3556799999999 6777776554211 1 1257999999999999977653
No 105
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=85.88 E-value=0.29 Score=57.66 Aligned_cols=49 Identities=16% Similarity=0.079 Sum_probs=30.3
Q ss_pred chhccccCCcch--hhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHH
Q psy2470 204 LRYIGQPEMGPL--LLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFL 267 (858)
Q Consensus 204 ~~~~a~TGSGKT--~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~ 267 (858)
+-++|++||||| ++++..++ . ....+ ...++++++||+++|.++.+.+.
T Consensus 167 ~vi~G~pGTGKTt~l~~ll~~l-----~-------~~~~~---~~~~vll~APTg~AA~~L~e~~~ 217 (608)
T 1w36_D 167 SVISGGPGTGKTTTVAKLLAAL-----I-------QMADG---ERCRIRLAAPTGKAAARLTESLG 217 (608)
T ss_dssp EEEECCTTSTHHHHHHHHHHHH-----H-------HTCSS---CCCCEEEEBSSHHHHHHHHHHHT
T ss_pred EEEEeCCCCCHHHHHHHHHHHH-----H-------Hhhhc---CCCeEEEEeCChhHHHHHHHHHH
Confidence 456899999999 22222111 1 00011 12358999999999999877654
No 106
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=84.24 E-value=1.2 Score=50.42 Aligned_cols=51 Identities=16% Similarity=0.267 Sum_probs=44.2
Q ss_pred ccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHHh
Q psy2470 645 TKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILK 695 (858)
Q Consensus 645 T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~ 695 (858)
+.+.+++.|.+..++..++.+.+++++|+||+|+++..+++.+++++++..
T Consensus 90 ~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~ 140 (459)
T 2z83_A 90 EIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE 140 (459)
T ss_dssp CSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH
T ss_pred cEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc
Confidence 456788899999999999999999999999999999989999998888764
No 107
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=83.93 E-value=1.2 Score=50.15 Aligned_cols=84 Identities=14% Similarity=0.247 Sum_probs=54.9
Q ss_pred ccCCchHHHHHHHHHhc-CCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHH
Q psy2470 610 SVTSLANRVSEELRTTL-GHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMG 688 (858)
Q Consensus 610 ~~l~~a~~~a~~~L~~l-g~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~ 688 (858)
-.+.|....|.+....+ |.-++|...........-+.+.+++.|.+..++..++.+.+++++|+||+|+++...+..+.
T Consensus 52 lvl~Ptr~La~Q~~~~l~g~~v~~~~~~~~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~ 131 (451)
T 2jlq_A 52 LILAPTRVVAAEMEEALRGLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARG 131 (451)
T ss_dssp EEEESSHHHHHHHHHHTTTSCEEECCTTCSCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHhcCceeeeeeccccccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHH
Confidence 33444455566665555 44444544311111111245778899999999988999999999999999999776676666
Q ss_pred HHHHH
Q psy2470 689 LLKKI 693 (858)
Q Consensus 689 ~l~~l 693 (858)
++...
T Consensus 132 ~~~~~ 136 (451)
T 2jlq_A 132 YISTR 136 (451)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
No 108
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=82.45 E-value=1.1 Score=54.29 Aligned_cols=79 Identities=13% Similarity=0.061 Sum_probs=64.2
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCc-ccccCCCCCeeE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNI-AETSITIPGIVY 496 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdv-AergldIp~V~~ 496 (858)
+++++|.+||+.=++..++.+++.... .++.+..+||+++..+|...++...+|...|+|+|+- ....+...++.+
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~---~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~l 493 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSK---FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGL 493 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTC---SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhh---cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCce
Confidence 468999999999999998888855321 2688999999999999999888888899999999972 233467888887
Q ss_pred EE-c
Q psy2470 497 VI-D 499 (858)
Q Consensus 497 VI-d 499 (858)
|| |
T Consensus 494 VVID 497 (780)
T 1gm5_A 494 VIID 497 (780)
T ss_dssp EEEE
T ss_pred EEec
Confidence 77 6
No 109
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=82.21 E-value=1.6 Score=51.28 Aligned_cols=86 Identities=14% Similarity=0.252 Sum_probs=58.9
Q ss_pred ccCCchHHHHHHHHHhc-CCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHH
Q psy2470 610 SVTSLANRVSEELRTTL-GHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMG 688 (858)
Q Consensus 610 ~~l~~a~~~a~~~L~~l-g~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~ 688 (858)
-.+.|....|.+....+ |..++|..+........-+.+.+++.|.+..++..++.+.+++++|+||+|+.+...+..+.
T Consensus 219 Lvl~PtreLa~Qi~~~l~~~~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~ 298 (618)
T 2whx_A 219 LILAPTRVVAAEMEEALRGLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARG 298 (618)
T ss_dssp EEEESSHHHHHHHHHHTTTSCEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHH
T ss_pred EEEcChHHHHHHHHHHhcCCceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHH
Confidence 33445555666666666 55566654421111111245778889999999988999999999999999999777777777
Q ss_pred HHHHHHh
Q psy2470 689 LLKKILK 695 (858)
Q Consensus 689 ~l~~ll~ 695 (858)
.+++.+.
T Consensus 299 ~i~~~l~ 305 (618)
T 2whx_A 299 YISTRVE 305 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7766653
No 110
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=77.20 E-value=0.66 Score=55.16 Aligned_cols=64 Identities=11% Similarity=0.232 Sum_probs=50.4
Q ss_pred ccceeeccCHH--HHhccccCCCcccccCChhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccC
Q psy2470 41 SRKFSRLYTEA--SFSQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVN 114 (858)
Q Consensus 41 ~g~c~rLy~~~--~~~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~ 114 (858)
+|.||++|+++ .+..+.....|||++.+|....++++.++.. ++...+.+.++.+..+..+|..
T Consensus 435 ~G~v~~l~~~d~~~~~~~~~~~~~~i~~~~l~p~~~~l~~~~~~----------l~~~~l~ell~~l~~~~~vd~~ 500 (677)
T 3rc3_A 435 EGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYH----------LPDATLSNLIDIFVDFSQVDGQ 500 (677)
T ss_dssp SEEEEESSTTHHHHHHHHHHSCCCCCCCEEECCCHHHHHHHHHH----------STTSCHHHHHHHHHHHCBCCTT
T ss_pred CEEEEEEecchHHHHHHHHhcCcchhhhccCCChHHHHHHHhcc----------CCcchHHHHHHHHHHhhcccch
Confidence 58999999988 6678999999999999999999999999842 2223466666777777766643
No 111
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=77.10 E-value=4.7 Score=40.40 Aligned_cols=76 Identities=14% Similarity=0.063 Sum_probs=55.9
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcc------cccCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIA------ETSIT 490 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvA------ergld 490 (858)
....+||.+|+++-++.+++.+++.... .+++.+..++|+.+..++...++ ...|+|+|+=- ...++
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~-----~~~Iiv~Tp~~l~~~~~~~~~~ 163 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIK--MEGLECHVFIGGTPLSQDKTRLK-----KCHIAVGSPGRIKQLIELDYLN 163 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT--STTCCEEEECTTSCHHHHHHHTT-----SCSEEEECHHHHHHHHHTTSSC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcc--cCCceEEEEeCCCCHHHHHHhcc-----CCCEEEECHHHHHHHHhcCCcc
Confidence 4568999999999999999988865211 23678889999999888877764 25799999721 23456
Q ss_pred CCCeeEEE-c
Q psy2470 491 IPGIVYVI-D 499 (858)
Q Consensus 491 Ip~V~~VI-d 499 (858)
..++++|| |
T Consensus 164 ~~~~~~lViD 173 (230)
T 2oxc_A 164 PGSIRLFILD 173 (230)
T ss_dssp GGGCCEEEES
T ss_pred cccCCEEEeC
Confidence 67776555 6
No 112
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=76.72 E-value=12 Score=40.14 Aligned_cols=103 Identities=9% Similarity=-0.034 Sum_probs=58.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCC-----C
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSIT-----I 491 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergld-----I 491 (858)
.+.+||||....+..+-+.+.+... ++...-+-|....+++ +. +++...|.+.|--+.-|++ .
T Consensus 124 ~~~kVLIfsq~t~~LDilE~~l~~~-------~~~y~RlDG~~~~~~~-k~----~~~~~~i~Lltsag~~gin~~~~nl 191 (328)
T 3hgt_A 124 YETETAIVCRPGRTMDLLEALLLGN-------KVHIKRYDGHSIKSAA-AA----NDFSCTVHLFSSEGINFTKYPIKSK 191 (328)
T ss_dssp SCEEEEEEECSTHHHHHHHHHHTTS-------SCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCCCC
T ss_pred CCCEEEEEECChhHHHHHHHHHhcC-------CCceEeCCCCchhhhh-hc----ccCCceEEEEECCCCCCcCcccccC
Confidence 3578999999999998888888754 8888999988544432 22 2345666665542233343 4
Q ss_pred CCeeEEEcCCCccceeccCCCCCCcceeeecCH-hhHHHhhcccC--CCCCceEEEeh
Q psy2470 492 PGIVYVIDPGFVKARWFNPNTLTNSLVVVPISK-ASAVQRAGRAG--RVRSGHVYRKN 546 (858)
Q Consensus 492 p~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~-~~~~qR~GRaG--R~g~G~~~rL~ 546 (858)
.+.+.||= ||+..+ |-+. -+++.|+-|.| +..+-.+|||.
T Consensus 192 ~~aD~VI~--------~DsdwN-------p~~d~iQa~~r~~R~~~gq~k~v~V~RLv 234 (328)
T 3hgt_A 192 ARFDMLIC--------LDTTVD-------TSQKDIQYLLQYKRERKGLERYAPIVRLV 234 (328)
T ss_dssp SCCSEEEE--------CSTTCC-------TTSHHHHHHHCCC---------CCEEEEE
T ss_pred CCCCEEEE--------ECCCCC-------CCChHHHHHHHHhhhccCCCCcceEEEEe
Confidence 56677775 553322 2222 23444555553 33346899998
No 113
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=75.16 E-value=1.9 Score=47.63 Aligned_cols=80 Identities=11% Similarity=0.099 Sum_probs=60.6
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCccc----ccCCC
Q psy2470 416 MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAE----TSITI 491 (858)
Q Consensus 416 ~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAe----rgldI 491 (858)
...+.+||-+|+++-+..+++.+++... .++.+..+||+.+.+++...++....|...|+|+|+=.- .-+..
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~----~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~ 137 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD----EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQ 137 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC----SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTT
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc----CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcc
Confidence 3467899999999999999999987522 378999999999997776666666667788999997322 01445
Q ss_pred CCeeEEE-c
Q psy2470 492 PGIVYVI-D 499 (858)
Q Consensus 492 p~V~~VI-d 499 (858)
.++++|| |
T Consensus 138 ~~~~~iViD 146 (414)
T 3oiy_A 138 KRFDFVFVD 146 (414)
T ss_dssp CCCSEEEES
T ss_pred ccccEEEEe
Confidence 5777666 5
No 114
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=75.07 E-value=4.5 Score=40.15 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=47.2
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCc------ccccCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNI------AETSIT 490 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdv------Aergld 490 (858)
..+.+||.+|+++-++.+++.+++... ..++.+..++|+.+..++...+.. .+|+|+|+= ....+.
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~-----~~iiv~Tp~~l~~~~~~~~~~ 152 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAF---HMDIKVHACIGGTSFVEDAEGLRD-----AQIVVGTPGRVFDNIQRRRFR 152 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTT---TSCCCEEEECC----------CTT-----CSEEEECHHHHHHHHHTTSSC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhc---ccCceEEEEeCCcchHHHHhcCCC-----CCEEEECHHHHHHHHHhCCcc
Confidence 456899999999999999998886532 126788899999887776655542 579999962 133456
Q ss_pred CCCeeEEE-c
Q psy2470 491 IPGIVYVI-D 499 (858)
Q Consensus 491 Ip~V~~VI-d 499 (858)
..++++|| |
T Consensus 153 ~~~~~~iViD 162 (224)
T 1qde_A 153 TDKIKMFILD 162 (224)
T ss_dssp CTTCCEEEEE
T ss_pred hhhCcEEEEc
Confidence 67777666 5
No 115
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=73.83 E-value=6.8 Score=39.95 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=56.5
Q ss_pred HhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----ccc-
Q psy2470 413 HESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAE- 486 (858)
Q Consensus 413 ~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAe- 486 (858)
........+||.+|+++-++.+++.+++.... .++.+..++|+.+..++...+. +...|+|+|+ ...
T Consensus 106 ~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~ 178 (249)
T 3ber_A 106 LETPQRLFALVLTPTRELAFQISEQFEALGSS---IGVQSAVIVGGIDSMSQSLALA----KKPHIIIATPGRLIDHLEN 178 (249)
T ss_dssp HHSCCSSCEEEECSSHHHHHHHHHHHHHHHGG---GTCCEEEECTTSCHHHHHHHHH----TCCSEEEECHHHHHHHHHH
T ss_pred hcCCCCceEEEEeCCHHHHHHHHHHHHHHhcc---CCeeEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHc
Confidence 33333567999999999999999888754221 2678888999998877666553 2357999995 222
Q ss_pred -ccCCCCCeeEEE-c
Q psy2470 487 -TSITIPGIVYVI-D 499 (858)
Q Consensus 487 -rgldIp~V~~VI-d 499 (858)
.+++..++++|| |
T Consensus 179 ~~~~~l~~~~~lViD 193 (249)
T 3ber_A 179 TKGFNLRALKYLVMD 193 (249)
T ss_dssp STTCCCTTCCEEEEC
T ss_pred CCCcCccccCEEEEc
Confidence 356777887666 5
No 116
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=73.69 E-value=8.3 Score=37.50 Aligned_cols=76 Identities=14% Similarity=0.116 Sum_probs=54.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----ccc-ccCCC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAE-TSITI 491 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAe-rgldI 491 (858)
..++||.+|+++-++.+++.+++.... .++..+..++|+.+..++...+. +...|+|+|+ ... ..+..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~ 144 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKH--MGGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKGVAKV 144 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTT--SSSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTCSCC
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhh--cCCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcCCcCc
Confidence 457999999999999999888865221 23678888999998877665553 2457999997 122 23456
Q ss_pred CCeeEEE-c
Q psy2470 492 PGIVYVI-D 499 (858)
Q Consensus 492 p~V~~VI-d 499 (858)
.++++|| |
T Consensus 145 ~~~~~lViD 153 (206)
T 1vec_A 145 DHVQMIVLD 153 (206)
T ss_dssp TTCCEEEEE
T ss_pred ccCCEEEEE
Confidence 6777666 5
No 117
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=73.03 E-value=5.7 Score=39.26 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=55.9
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCc-----c-cccCCC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNI-----A-ETSITI 491 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdv-----A-ergldI 491 (858)
...+||.+|+++-++.+++.+++.... .+++.+..+||+.+..++.+.+.. +...|+|+|+= . ...+..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~--~~~~~v~~~~g~~~~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~~~~~~ 156 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKY--MPNVKVAVFFGGLSIKKDEEVLKK---NCPHIVVGTPGRILALARNKSLNL 156 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTT--STTCCEEEESCCSCHHHHHHHHHH---SCCSEEEECHHHHHHHHHTTSSCC
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhh--CCCceEEEEeCCCChHHHHHHHhc---CCCCEEEeCHHHHHHHHHhCCCCc
Confidence 348999999999999999888865221 236888999999998877666542 34579999961 1 234667
Q ss_pred CCeeEEE-c
Q psy2470 492 PGIVYVI-D 499 (858)
Q Consensus 492 p~V~~VI-d 499 (858)
.++++|| |
T Consensus 157 ~~~~~lViD 165 (220)
T 1t6n_A 157 KHIKHFILD 165 (220)
T ss_dssp TTCCEEEEE
T ss_pred ccCCEEEEc
Confidence 7887766 5
No 118
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=72.58 E-value=0.9 Score=53.78 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=30.4
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHH
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFL 267 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~ 267 (858)
-|.|++|||||..-+. +... .+ . ...++||.+||-.|+.++++++.
T Consensus 209 lI~GPPGTGKT~ti~~-------~I~~--l~---~-----~~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 209 IIHGPPGTGKTTTVVE-------IILQ--AV---K-----QGLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp EEECCTTSCHHHHHHH-------HHHH--HH---H-----TTCCEEEEESSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHH-------HHHH--HH---h-----CCCeEEEEcCchHHHHHHHHHHH
Confidence 3679999999922111 1111 11 1 11258999999999999999885
No 119
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=72.44 E-value=5 Score=40.43 Aligned_cols=77 Identities=12% Similarity=0.104 Sum_probs=47.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----cccc-cCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAET-SIT 490 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAer-gld 490 (858)
....+||.+|+++-+..+++.+++.... .++.+..++|+.+..++.. ....+...|+|+|+ ...+ .+.
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~---~l~~~~~~Ilv~Tp~~l~~~l~~~~~~ 170 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDY---MGATCHACIGGTNVRNEMQ---KLQAEAPHIVVGTPGRVFDMLNRRYLS 170 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT---TTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSC
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhh---cCceEEEEECCCchHHHHH---HHhcCCCCEEEECHHHHHHHHHhCCcC
Confidence 3568999999999999999998865321 2567788888876655433 33345568999994 3333 356
Q ss_pred CCCeeEEE-c
Q psy2470 491 IPGIVYVI-D 499 (858)
Q Consensus 491 Ip~V~~VI-d 499 (858)
..++++|| |
T Consensus 171 ~~~~~~lViD 180 (237)
T 3bor_A 171 PKWIKMFVLD 180 (237)
T ss_dssp STTCCEEEEE
T ss_pred cccCcEEEEC
Confidence 77777766 5
No 120
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=72.34 E-value=3.9 Score=41.39 Aligned_cols=75 Identities=20% Similarity=0.234 Sum_probs=55.2
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----cccc-cCCC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAET-SITI 491 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAer-gldI 491 (858)
.+.+||.+|+++-++.+.+.+++.... .++.+..++|+.+..++...+.. ...|+|+|+ ...+ .+++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~ 174 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRA---CRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNL 174 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHH---TTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhh---cCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCc
Confidence 567999999999999888888754221 26788899999999888776653 257999995 3332 3567
Q ss_pred CCeeEEE-c
Q psy2470 492 PGIVYVI-D 499 (858)
Q Consensus 492 p~V~~VI-d 499 (858)
.++++|| |
T Consensus 175 ~~~~~lViD 183 (242)
T 3fe2_A 175 RRTTYLVLD 183 (242)
T ss_dssp TTCCEEEET
T ss_pred ccccEEEEe
Confidence 7888766 5
No 121
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=71.93 E-value=3.5 Score=48.14 Aligned_cols=59 Identities=17% Similarity=0.106 Sum_probs=52.0
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCC--CCCcEEEEEecC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPT--PRAMRKIVIATN 483 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f--~~g~~kVlvATd 483 (858)
.|.+||.+|+++-++...+.|++. ++.+..++|+++..++..++... ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~-------gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQL-------GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHH-------TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhc-------CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 678999999999999999999887 78899999999999988877655 567889999998
No 122
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=70.30 E-value=4.2 Score=40.57 Aligned_cols=75 Identities=23% Similarity=0.255 Sum_probs=50.0
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----c-ccccCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----I-AETSIT 490 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----v-Aergld 490 (858)
....+||.+|+++-++.+++.+++.. ..++.+..++|+.+..++...+.. ...|+|+|+ . ....++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~iiv~Tp~~l~~~~~~~~~~ 164 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYS----YKGLKSICIYGGRNRNGQIEDISK----GVDIIIATPGRLNDLQMNNSVN 164 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHC----CTTCCEEEECC------CHHHHHS----CCSEEEECHHHHHHHHHTTCCC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhc----ccCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcC
Confidence 35679999999999999999998753 137788889999887766555432 257999995 2 223466
Q ss_pred CCCeeEEE-c
Q psy2470 491 IPGIVYVI-D 499 (858)
Q Consensus 491 Ip~V~~VI-d 499 (858)
..++++|| |
T Consensus 165 ~~~~~~lViD 174 (228)
T 3iuy_A 165 LRSITYLVID 174 (228)
T ss_dssp CTTCCEEEEC
T ss_pred cccceEEEEE
Confidence 77888766 5
No 123
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=68.68 E-value=6 Score=49.98 Aligned_cols=80 Identities=11% Similarity=0.141 Sum_probs=64.9
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-cccccCCCCCee
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-IAETSITIPGIV 495 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-vAergldIp~V~ 495 (858)
...+++|.+||..-++..++.+++... ..++.+..++|..+..++...++...+|...|+|+|. +....+...++.
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~---~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~ 727 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFA---NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 727 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHST---TTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhh---cCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccc
Confidence 356899999999999999988885422 1257888999999999999888888889999999994 455568888998
Q ss_pred EEE-c
Q psy2470 496 YVI-D 499 (858)
Q Consensus 496 ~VI-d 499 (858)
+|| |
T Consensus 728 lvIiD 732 (1151)
T 2eyq_A 728 LLIVD 732 (1151)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 877 6
No 124
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=68.64 E-value=5.6 Score=38.76 Aligned_cols=74 Identities=14% Similarity=0.101 Sum_probs=52.9
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----ccc-ccCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAE-TSIT 490 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAe-rgld 490 (858)
....+||.+|+++-++.+++.+++.. +++.+..+||+.+..++...+.. ...|+|+|+ ... ..++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~ 141 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVA-----PHLKVVAVYGGTGYGKQKEALLR----GADAVVATPGRALDYLRQGVLD 141 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHC-----TTSCEEEECSSSCSHHHHHHHHH----CCSEEEECHHHHHHHHHHTSSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHh-----hcceEEEEECCCChHHHHHHhhC----CCCEEEECHHHHHHHHHcCCcc
Confidence 35679999999999999999998762 24678888999887665554432 256999996 222 3456
Q ss_pred CCCeeEEE-c
Q psy2470 491 IPGIVYVI-D 499 (858)
Q Consensus 491 Ip~V~~VI-d 499 (858)
..++++|| |
T Consensus 142 ~~~~~~iViD 151 (207)
T 2gxq_A 142 LSRVEVAVLD 151 (207)
T ss_dssp CTTCSEEEEE
T ss_pred hhhceEEEEE
Confidence 67777666 5
No 125
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=64.69 E-value=7.3 Score=43.36 Aligned_cols=87 Identities=13% Similarity=0.225 Sum_probs=54.3
Q ss_pred cccCCchHHHHHHHHHhc-CCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHH
Q psy2470 609 ISVTSLANRVSEELRTTL-GHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILM 687 (858)
Q Consensus 609 ~~~l~~a~~~a~~~L~~l-g~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll 687 (858)
...+.|....|.+....+ |.-++|..+........-+.+.+++.|.+...+..++.+.+++++|+||+|..+...+...
T Consensus 34 ~lvl~Pt~~La~Q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~ 113 (431)
T 2v6i_A 34 TVILAPTRVVASEMYEALRGEPIRYMTPAVQSERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAAR 113 (431)
T ss_dssp EEEEESSHHHHHHHHHHTTTSCEEEC---------CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHH
T ss_pred EEEECcHHHHHHHHHHHhCCCeEEEEecCccccCCCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHH
Confidence 344555445555555555 4334443331011111123466778899888888888899999999999999977777777
Q ss_pred HHHHHHHh
Q psy2470 688 GLLKKILK 695 (858)
Q Consensus 688 ~~l~~ll~ 695 (858)
..++++..
T Consensus 114 ~~l~~~~~ 121 (431)
T 2v6i_A 114 GYIETRVS 121 (431)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 77777753
No 126
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=63.89 E-value=11 Score=38.25 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=53.7
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCc------ccccCCC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNI------AETSITI 491 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdv------AergldI 491 (858)
...+||.+|+++-++.+.+.+++.... .++.+..++|+.+..++.+.+.. ...|+|+|+= -...++.
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~----~~~Ivv~Tp~~l~~~l~~~~~~~ 172 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLN---TPLRSCVVYGGADTHSQIREVQM----GCHLLVATPGRLVDFIEKNKISL 172 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTT---SSCCEEEECSSSCSHHHHHHHSS----CCSEEEECHHHHHHHHHTTSBCC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcc---CCceEEEEECCCCHHHHHHHhCC----CCCEEEECHHHHHHHHHcCCCCh
Confidence 358999999999999999888865321 26778889999887776665542 3579999972 1223566
Q ss_pred CCeeEEE-c
Q psy2470 492 PGIVYVI-D 499 (858)
Q Consensus 492 p~V~~VI-d 499 (858)
.++++|| |
T Consensus 173 ~~~~~lViD 181 (253)
T 1wrb_A 173 EFCKYIVLD 181 (253)
T ss_dssp TTCCEEEEE
T ss_pred hhCCEEEEe
Confidence 7777666 5
No 127
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=63.28 E-value=3.8 Score=48.34 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=37.1
Q ss_pred ccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHHh
Q psy2470 645 TKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILK 695 (858)
Q Consensus 645 T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~ 695 (858)
+.|.|+|.|+++..-. -.+.+++++|+||+|+++...+..+..+.+.+.
T Consensus 298 ~~IlV~TPGrLl~~~~--l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~ 346 (666)
T 3o8b_A 298 APVTYSTYGKFLADGG--CSGGAYDIIICDECHSTDSTTILGIGTVLDQAE 346 (666)
T ss_dssp CSEEEEEHHHHHHTTS--CCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTT
T ss_pred CCEEEECcHHHHhCCC--cccCcccEEEEccchhcCccHHHHHHHHHHhhh
Confidence 5788999999865322 235679999999999999887777766666554
No 128
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=63.23 E-value=9.3 Score=38.22 Aligned_cols=74 Identities=11% Similarity=0.077 Sum_probs=52.0
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCc-----ccc--cCC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNI-----AET--SIT 490 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdv-----Aer--gld 490 (858)
...+||.+|+++-++.+++.+++... ..++.+..+||+.+..++...+. ...|+|+|+= ..+ .++
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~-----~~~iiv~Tp~~l~~~l~~~~~~~ 168 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGK---NHDFSAGLIIGGKDLKHEAERIN-----NINILVCTPGRLLQHMDETVSFH 168 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTT---TSSCCEEEECCC--CHHHHHHHT-----TCSEEEECHHHHHHHHHHCSSCC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhC---CCCeeEEEEECCCCHHHHHHhCC-----CCCEEEECHHHHHHHHHhcCCcc
Confidence 46799999999999999998886532 12578889999988777666553 3579999961 122 356
Q ss_pred CCCeeEEE-c
Q psy2470 491 IPGIVYVI-D 499 (858)
Q Consensus 491 Ip~V~~VI-d 499 (858)
..++++|| |
T Consensus 169 ~~~~~~lViD 178 (236)
T 2pl3_A 169 ATDLQMLVLD 178 (236)
T ss_dssp CTTCCEEEET
T ss_pred cccccEEEEe
Confidence 67776655 5
No 129
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=62.68 E-value=2.3 Score=50.03 Aligned_cols=56 Identities=13% Similarity=0.066 Sum_probs=35.5
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCC
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGC 272 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~ 272 (858)
+.|+|..|||||.+-+..+ .++- ..+ |.+...+|++++|+.+|.++.+++.+.+|.
T Consensus 25 ~lV~a~aGsGKT~~l~~ri----------~~l~--~~~-~~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 25 LLVLAGAGSGKTRVLVHRI----------AWLM--SVE-NCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp EEEEECTTSCHHHHHHHHH----------HHHH--HTS-CCCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred EEEEECCCCCHHHHHHHHH----------HHHH--HhC-CCChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 4577999999992211111 1110 110 112235899999999999999999877653
No 130
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=59.17 E-value=9.7 Score=37.60 Aligned_cols=78 Identities=12% Similarity=0.086 Sum_probs=52.0
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCC-CCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----cccc-cCC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQR-EDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAET-SIT 490 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~-~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAer-gld 490 (858)
...+||.+|+++-++.+++.+++..... ...++.+..++|+.+..++.+.+. +...|+|+|+ ...+ .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLN----VQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCS----SCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcC----CCCCEEEeCHHHHHHHHHcCCCC
Confidence 4689999999999999998887653211 112577888899987665543332 2457999995 2233 345
Q ss_pred CCCeeEEE-c
Q psy2470 491 IPGIVYVI-D 499 (858)
Q Consensus 491 Ip~V~~VI-d 499 (858)
..++++|| |
T Consensus 148 ~~~~~~lViD 157 (219)
T 1q0u_A 148 VHTAHILVVD 157 (219)
T ss_dssp GGGCCEEEEC
T ss_pred cCcceEEEEc
Confidence 66777655 5
No 131
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=58.29 E-value=26 Score=37.93 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=54.3
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----cccc-cCCCC
Q psy2470 419 GDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAET-SITIP 492 (858)
Q Consensus 419 g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAer-gldIp 492 (858)
..+||.+|+++-+..+++.+++... ..++.+..+||+.+..++.+.+.. ...|+|+|+ ...+ .++..
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~ 174 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSY---RSRVRPCVVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLD 174 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHT---TSSCCEEEECSSSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSBCCT
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhC---cCCceEEEEECCCCHHHHHHHhhC----CCCEEEEChHHHHHHHHcCCcChh
Confidence 5699999999999999998886522 136788999999998877666542 357999997 2222 35567
Q ss_pred CeeEEE-c
Q psy2470 493 GIVYVI-D 499 (858)
Q Consensus 493 ~V~~VI-d 499 (858)
++++|| |
T Consensus 175 ~~~~iViD 182 (417)
T 2i4i_A 175 FCKYLVLD 182 (417)
T ss_dssp TCCEEEES
T ss_pred hCcEEEEE
Confidence 777666 5
No 132
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=57.49 E-value=4.3 Score=47.74 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=31.0
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHH
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFL 267 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~ 267 (858)
.-|.|++|||||..-+..+.. +... ....+++++||..++.++.+++.
T Consensus 198 ~li~GppGTGKT~~~~~~i~~---------l~~~-------~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 198 SLIQGPPGTGKTVTSATIVYH---------LARQ-------GNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp EEEECCTTSCHHHHHHHHHHH---------HHTS-------SSCCEEEEESSHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH---------HHHc-------CCCeEEEEeCcHHHHHHHHHHHH
Confidence 347899999999222111110 0100 12358999999999999998885
No 133
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=57.06 E-value=21 Score=39.49 Aligned_cols=75 Identities=19% Similarity=0.152 Sum_probs=55.5
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----cccc-cCCC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAET-SITI 491 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAer-gldI 491 (858)
...+||.+||++-+..+++.+++... ..++.+..+||+.+..++...+.. ...|+|+|+ ...+ .++.
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~---~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ivv~Tp~~l~~~l~~~~~~l 201 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAF---ESYLKIGIVYGGTSFRHQNECITR----GCHVVIATPGRLLDFVDRTFITF 201 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTT---TSSCCCCEECTTSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSCCC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhc---cCCcEEEEEECCCCHHHHHHHhhc----CCCEEEEChHHHHHHHHhCCccc
Confidence 45799999999999999998886532 136778889999998887776642 357999995 2233 3567
Q ss_pred CCeeEEE-c
Q psy2470 492 PGIVYVI-D 499 (858)
Q Consensus 492 p~V~~VI-d 499 (858)
.++++|| |
T Consensus 202 ~~~~~lVlD 210 (434)
T 2db3_A 202 EDTRFVVLD 210 (434)
T ss_dssp TTCCEEEEE
T ss_pred ccCCeEEEc
Confidence 7787766 5
No 134
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=56.77 E-value=6.1 Score=49.69 Aligned_cols=78 Identities=13% Similarity=0.123 Sum_probs=59.0
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCc-----ccccCC
Q psy2470 416 MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNI-----AETSIT 490 (858)
Q Consensus 416 ~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdv-----Aergld 490 (858)
...+.+||.+|+++-+..+++.+++.. ..++.+..+||+.+..+|...++...+|...|+|+|+= ..+ ++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~----~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~ 193 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLA----DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LS 193 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTS----CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HH
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhh----CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hc
Confidence 346789999999999999999998742 23788999999999977776666667777899999962 111 33
Q ss_pred CCCeeEEE
Q psy2470 491 IPGIVYVI 498 (858)
Q Consensus 491 Ip~V~~VI 498 (858)
..++++||
T Consensus 194 ~~~l~~lV 201 (1104)
T 4ddu_A 194 QKRFDFVF 201 (1104)
T ss_dssp TSCCSEEE
T ss_pred ccCcCEEE
Confidence 45666655
No 135
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=55.72 E-value=5 Score=46.03 Aligned_cols=75 Identities=8% Similarity=0.055 Sum_probs=59.1
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCccc------ccCCC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAE------TSITI 491 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAe------rgldI 491 (858)
.|.+||.+|+++-++...+.|++. ++.+..+||+.+.+++..++.....|..+|+++|+=-- ..+..
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~-------gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~ 137 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQAN-------GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAH 137 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTT
T ss_pred CCCEEEECChHHHHHHHHHHHHHc-------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhh
Confidence 578999999999999999999876 78899999999999988888777778889999996211 12333
Q ss_pred CCeeEEE-c
Q psy2470 492 PGIVYVI-D 499 (858)
Q Consensus 492 p~V~~VI-d 499 (858)
.++.+|| |
T Consensus 138 ~~~~~vViD 146 (523)
T 1oyw_A 138 WNPVLLAVD 146 (523)
T ss_dssp SCEEEEEES
T ss_pred CCCCEEEEe
Confidence 5666555 6
No 136
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=54.43 E-value=14 Score=37.85 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=54.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----cccc--cCC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAET--SIT 490 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAer--gld 490 (858)
..++||.+|+++-++..++.+++.... .+..+..++|+....++...+.. | ..|+|+|+ ...+ ++.
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~---~-~~Iiv~Tp~~l~~~~~~~~~~~ 198 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTH---HVHTYGLIMGGSNRSAEAQKLGN---G-INIIVATPGRLLDHMQNTPGFM 198 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTT---CCSCEEEECSSSCHHHHHHHHHH---C-CSEEEECHHHHHHHHHHCTTCC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhh---cCceEEEEECCCCHHHHHHHhcC---C-CCEEEEcHHHHHHHHHccCCcc
Confidence 567999999999999999999865321 25677888999888776655532 2 57999994 2222 467
Q ss_pred CCCeeEEE-c
Q psy2470 491 IPGIVYVI-D 499 (858)
Q Consensus 491 Ip~V~~VI-d 499 (858)
..++++|| |
T Consensus 199 ~~~l~~lViD 208 (262)
T 3ly5_A 199 YKNLQCLVID 208 (262)
T ss_dssp CTTCCEEEEC
T ss_pred cccCCEEEEc
Confidence 77888765 5
No 137
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=53.27 E-value=21 Score=38.28 Aligned_cols=77 Identities=17% Similarity=0.171 Sum_probs=55.7
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcc------cccCCC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIA------ETSITI 491 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvA------ergldI 491 (858)
.+.+||.+|+++-++.+++.+++.... .+++.+..++|+.+..++...+.. +...|+|+|+=. ...++.
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~---~~~~iiv~T~~~l~~~~~~~~~~~ 150 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKY--MPNVKVAVFFGGLSIKKDEEVLKK---NCPHIVVGTPGRILALARNKSLNL 150 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTT--CTTCCEEEECTTSCHHHHHHHHHH---SCCSEEEECHHHHHHHHHTTSSCC
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhh--CCCeEEEEEeCCCCHHHHHHHHhc---CCCCEEEECHHHHHHHHHcCCccc
Confidence 458999999999999999888865321 237889999999998877766542 345799999521 223566
Q ss_pred CCeeEEE-c
Q psy2470 492 PGIVYVI-D 499 (858)
Q Consensus 492 p~V~~VI-d 499 (858)
.++++|| |
T Consensus 151 ~~~~~vViD 159 (391)
T 1xti_A 151 KHIKHFILD 159 (391)
T ss_dssp TTCSEEEEC
T ss_pred cccCEEEEe
Confidence 7777666 5
No 138
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=52.00 E-value=22 Score=38.14 Aligned_cols=75 Identities=16% Similarity=0.109 Sum_probs=54.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcc------cccCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIA------ETSIT 490 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvA------ergld 490 (858)
..+.+||.+|+++-++.+++.+++... ..++.+..++|+.+..++...+. ..+|+|+|+=. ...+.
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~ 159 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAF---HMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFR 159 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTT---TSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhc---cCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcc
Confidence 456899999999999999988876522 13678899999999887766654 34699999421 22345
Q ss_pred CCCeeEEE-c
Q psy2470 491 IPGIVYVI-D 499 (858)
Q Consensus 491 Ip~V~~VI-d 499 (858)
..++++|| |
T Consensus 160 ~~~~~~vIiD 169 (394)
T 1fuu_A 160 TDKIKMFILD 169 (394)
T ss_dssp CTTCCEEEEE
T ss_pred hhhCcEEEEE
Confidence 66777666 5
No 139
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=51.85 E-value=32 Score=37.04 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=54.6
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----cccc-cCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAET-SIT 490 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAer-gld 490 (858)
..+++||.+|++.-++.+++.+++.... .++.+..++|+....++...+. +..+|+|+|+ ...+ ...
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~----~~~~Ivv~T~~~l~~~~~~~~~~ 160 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKH---CGISCMVTTGGTNLRDDILRLN----ETVHILVGTPGRVLDLASRKVAD 160 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT---TTCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTCSC
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcc---cCceEEEEeCCcchHHHHHHhc----CCCCEEEEchHHHHHHHHhCCcc
Confidence 3558999999999999999888865321 2677888999988776655443 3457999994 2333 356
Q ss_pred CCCeeEEE-c
Q psy2470 491 IPGIVYVI-D 499 (858)
Q Consensus 491 Ip~V~~VI-d 499 (858)
..++++|| |
T Consensus 161 ~~~~~~vIiD 170 (400)
T 1s2m_A 161 LSDCSLFIMD 170 (400)
T ss_dssp CTTCCEEEEE
T ss_pred cccCCEEEEe
Confidence 77887766 5
No 140
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=49.51 E-value=5.5 Score=48.25 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=31.7
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHH
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLT 268 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~ 268 (858)
.-|.|++|||||..-+..+..+ . .. ...++|+++||..+|.++.+++.+
T Consensus 378 ~lI~GppGTGKT~~i~~~i~~l---------~-~~------~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 378 SLIQGPPGTGKTVTSATIVYHL---------S-KI------HKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH---------H-HH------HCCCEEEEESSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH---------H-hC------CCCeEEEEcCcHHHHHHHHHHHHh
Confidence 3478999999992222111110 0 00 113589999999999999999854
No 141
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=48.91 E-value=23 Score=36.85 Aligned_cols=74 Identities=20% Similarity=0.230 Sum_probs=53.6
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCc------ccccCCC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNI------AETSITI 491 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdv------AergldI 491 (858)
.+.+||.+|+++-++.+++.+++... ..+..+..+||+.+..++...+.. ..|+|+|+= ....++.
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~v~T~~~l~~~~~~~~~~~ 127 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGR---YMDTKVAEVYGGMPYKAQINRVRN-----ADIVVATPGRLLDLWSKGVIDL 127 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTT---TSCCCEEEECTTSCHHHHHHHHTT-----CSEEEECHHHHHHHHHTTSCCG
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhh---hcCCcEEEEECCcchHHHHhhcCC-----CCEEEECHHHHHHHHHcCCcch
Confidence 56899999999999999999986522 126778899999998887666643 469999952 1223456
Q ss_pred CCeeEEE-c
Q psy2470 492 PGIVYVI-D 499 (858)
Q Consensus 492 p~V~~VI-d 499 (858)
.++++|| |
T Consensus 128 ~~~~~iViD 136 (337)
T 2z0m_A 128 SSFEIVIID 136 (337)
T ss_dssp GGCSEEEEE
T ss_pred hhCcEEEEE
Confidence 6666655 6
No 142
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=48.80 E-value=7 Score=47.31 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=30.5
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHH
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFL 267 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~ 267 (858)
-|.|++|||||..-+..+.. +... ....+++++||..||.++.+++.
T Consensus 375 lI~GppGTGKT~ti~~~i~~---------l~~~-------~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 375 LIQGPPGTGKTVTSATIVYH---------LARQ-------GNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp EEECCTTSCHHHHHHHHHHH---------HHTT-------CSSCEEEEESSHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHH---------HHHc-------CCCcEEEEcCcHHHHHHHHHHHH
Confidence 47899999999222211111 1100 12358999999999999988874
No 143
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=48.30 E-value=12 Score=37.47 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=51.2
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----cccc---cC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAET---SI 489 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAer---gl 489 (858)
...+||.+|+++-++.+++.+++... ..++.+..+||+.....+ +.....+...|+|+|+ ...+ .+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~ 171 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISE---GTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGI 171 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTT---TSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhc---ccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCc
Confidence 34799999999999999999886532 226777777776433322 3333455678999994 2222 46
Q ss_pred CCCCeeEEE-c
Q psy2470 490 TIPGIVYVI-D 499 (858)
Q Consensus 490 dIp~V~~VI-d 499 (858)
+..++++|| |
T Consensus 172 ~~~~~~~lViD 182 (245)
T 3dkp_A 172 DLASVEWLVVD 182 (245)
T ss_dssp CCTTCCEEEES
T ss_pred ccccCcEEEEe
Confidence 777888766 5
No 144
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=47.77 E-value=13 Score=44.11 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=42.5
Q ss_pred cceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHHh
Q psy2470 646 KIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILK 695 (858)
Q Consensus 646 ~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~ 695 (858)
.+.+++.|.+...+..++.+.+++++|+||+|+.+...+..+.++++++.
T Consensus 311 ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~ 360 (673)
T 2wv9_A 311 IVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVE 360 (673)
T ss_dssp CEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhcc
Confidence 45667788888888888889999999999999998888888888888764
No 145
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=47.07 E-value=37 Score=35.70 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=54.4
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcc------cccC
Q psy2470 416 MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIA------ETSI 489 (858)
Q Consensus 416 ~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvA------ergl 489 (858)
.+...+||.+|+++-++.+++.+++.... .++.+..++|+....++...+. ..+|+|+|+=. ...+
T Consensus 72 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~ 143 (367)
T 1hv8_A 72 NNGIEAIILTPTRELAIQVADEIESLKGN---KNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTL 143 (367)
T ss_dssp SSSCCEEEECSCHHHHHHHHHHHHHHHCS---SCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCS
T ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHHhCC---CCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCc
Confidence 34568999999999999999998865322 3677888999998877666554 24799999621 1234
Q ss_pred CCCCeeEEE-c
Q psy2470 490 TIPGIVYVI-D 499 (858)
Q Consensus 490 dIp~V~~VI-d 499 (858)
...++++|| |
T Consensus 144 ~~~~~~~iIiD 154 (367)
T 1hv8_A 144 NLKNVKYFILD 154 (367)
T ss_dssp CTTSCCEEEEE
T ss_pred ccccCCEEEEe
Confidence 566777666 5
No 146
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=46.38 E-value=6 Score=42.65 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.9
Q ss_pred cchhccccCCcchhhhhhhhcCcC
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFP 226 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP 226 (858)
-+-++|+||||||.+.+.+|-.++
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHCC
Confidence 467889999999988888888777
No 147
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=44.36 E-value=6 Score=44.26 Aligned_cols=18 Identities=6% Similarity=-0.136 Sum_probs=15.6
Q ss_pred EEEccchHHHHHHHHHHH
Q psy2470 249 TIVRSSIDVACSCTVVEF 266 (858)
Q Consensus 249 ~LVl~PtR~la~qva~~v 266 (858)
.+|++||++++..+-+++
T Consensus 187 ~lVlTpT~~aa~~l~~kl 204 (446)
T 3vkw_A 187 DLILVPGRQAAEMIRRRA 204 (446)
T ss_dssp CEEEESCHHHHHHHHHHH
T ss_pred eEEEeCCHHHHHHHHHHh
Confidence 599999999998887766
No 148
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=43.27 E-value=19 Score=40.17 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=40.2
Q ss_pred ceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHHh
Q psy2470 647 IKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILK 695 (858)
Q Consensus 647 i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~ 695 (858)
+.++..|.+..++..++.+.+++++|+||+|+.+...++.++++.++..
T Consensus 79 ~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~ 127 (440)
T 1yks_A 79 IDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR 127 (440)
T ss_dssp EEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH
T ss_pred eeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhc
Confidence 4455678777777778889999999999999997777788888887764
No 149
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=41.81 E-value=50 Score=35.50 Aligned_cols=77 Identities=10% Similarity=0.118 Sum_probs=54.9
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----cccc-cCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAET-SIT 490 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAer-gld 490 (858)
..+.+||.+|+++-++.+++.+++.... .+..+..++|+.....+...+. .+...|+|+|+ ...+ .+.
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiv~T~~~l~~~l~~~~~~ 180 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDY---MGASCHACIGGTNVRAEVQKLQ---MEAPHIIVGTPGRVFDMLNRRYLS 180 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGG---SCCCEEECCCCTTHHHHHHHHT---TTCCSEEEECHHHHHHHHHHTSSC
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcc---cCceEEEEECCcchHHHHHHHh---cCCCCEEEECHHHHHHHHHcCCcc
Confidence 4678999999999999999988865322 3677888899888777655543 24468999994 2333 356
Q ss_pred CCCeeEEE-c
Q psy2470 491 IPGIVYVI-D 499 (858)
Q Consensus 491 Ip~V~~VI-d 499 (858)
..++++|| |
T Consensus 181 ~~~~~~vViD 190 (414)
T 3eiq_A 181 PKYIKMFVLD 190 (414)
T ss_dssp STTCCEEEEC
T ss_pred cccCcEEEEE
Confidence 66777665 5
No 150
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=41.67 E-value=6.9 Score=41.66 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=21.1
Q ss_pred CccccchhccccCCcchhhhhhhhcCcC
Q psy2470 199 DMPYQLRYIGQPEMGPLLLRVRRALDFP 226 (858)
Q Consensus 199 ~~~~~~~~~a~TGSGKT~~~~~~a~~lP 226 (858)
.+|--+-+.|+||||||.+...+|-.++
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 3444566789999999988877775555
No 151
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=41.13 E-value=6.3 Score=46.63 Aligned_cols=56 Identities=13% Similarity=0.034 Sum_probs=34.9
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCC
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGC 272 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~ 272 (858)
+.|+|..|||||.+=+. .+.+ .+.. . |-....+|+++.|+-+|.++.+|+.+.++.
T Consensus 18 ~lV~AgaGSGKT~~l~~------ri~~---ll~~--~--~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 18 CLVLAGAGSGKTRVITN------KIAH---LIRG--C--GYQARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp EEECCCTTSCHHHHHHH------HHHH---HHHH--H--CCCGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred EEEEeCCCCChHHHHHH------HHHH---HHHh--c--CCCHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 45679999999911111 0111 1100 0 112235899999999999999999877654
No 152
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=40.27 E-value=32 Score=37.25 Aligned_cols=76 Identities=16% Similarity=0.113 Sum_probs=55.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----cccc-cCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAET-SIT 490 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAer-gld 490 (858)
..+++||.+|+++-+..+++.+++... ..++.+..++|+....++.+.+.. ...|+|+|+ ...+ .+.
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~----~~~ivv~Tp~~l~~~l~~~~~~ 176 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGD---YMNVQCHACIGGTNVGEDIRKLDY----GQHVVAGTPGRVFDMIRRRSLR 176 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTT---TTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHTTSSC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhc---cCCeEEEEEECCCCHHHHHHHhhc----CCCEEEcCHHHHHHHHHhCCcc
Confidence 457899999999999999998886532 236778889999988877666542 237999995 3333 456
Q ss_pred CCCeeEEE-c
Q psy2470 491 IPGIVYVI-D 499 (858)
Q Consensus 491 Ip~V~~VI-d 499 (858)
..++++|| |
T Consensus 177 ~~~~~~vViD 186 (410)
T 2j0s_A 177 TRAIKMLVLD 186 (410)
T ss_dssp CTTCCEEEEE
T ss_pred HhheeEEEEc
Confidence 67777666 6
No 153
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=39.24 E-value=46 Score=36.31 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=55.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCc-c-----cccCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNI-A-----ETSIT 490 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdv-A-----ergld 490 (858)
..+.+||.+|++.-++.+++.+++... .++..+..+||+....++...+. ...|+|+|.= + ...+.
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~---~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~ 122 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFN---LPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRIS 122 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBC---SCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhC---cchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcc
Confidence 467899999999999999999986632 12457889999999988776654 3479999852 1 12356
Q ss_pred CCCeeEEE-c
Q psy2470 491 IPGIVYVI-D 499 (858)
Q Consensus 491 Ip~V~~VI-d 499 (858)
..++++|| |
T Consensus 123 ~~~~~~vIiD 132 (494)
T 1wp9_A 123 LEDVSLIVFD 132 (494)
T ss_dssp TTSCSEEEEE
T ss_pred hhhceEEEEE
Confidence 67777666 6
No 154
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=38.69 E-value=8.4 Score=43.27 Aligned_cols=22 Identities=5% Similarity=0.206 Sum_probs=19.5
Q ss_pred CEEEEcCCHHHHHHHHHHHHHh
Q psy2470 420 DILAFVIGLEQIEHIIGILKQY 441 (858)
Q Consensus 420 ~iLVFl~t~~~i~~l~~~L~~~ 441 (858)
++.|.++|.++++.+.+.|++.
T Consensus 254 ~~aIL~rtN~~~~~~n~~lr~~ 275 (459)
T 3upu_A 254 ENRVMAFTNKSVDKLNSIIRKK 275 (459)
T ss_dssp TEEEEESSHHHHHHHHHHHHHH
T ss_pred ceEEEEehHhHHHHHHHHHHHH
Confidence 8999999999999999998854
No 155
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=38.22 E-value=9.2 Score=45.72 Aligned_cols=56 Identities=11% Similarity=0.059 Sum_probs=34.8
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCC
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGC 272 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~ 272 (858)
+.|+|..|||||.+=+. .+.+. +. +. |-....+|+++.|+-||.++-+|+.+.+|.
T Consensus 27 ~lV~AgAGSGKT~vL~~------ri~~l---l~--~~--~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~ 82 (724)
T 1pjr_A 27 LLIMAGAGSGKTRVLTH------RIAYL---MA--EK--HVAPWNILAITFTNKAAREMRERVQSLLGG 82 (724)
T ss_dssp EEEEECTTSCHHHHHHH------HHHHH---HH--TT--CCCGGGEEEEESSHHHHHHHHHHHHHHHGG
T ss_pred EEEEEcCCCCHHHHHHH------HHHHH---HH--hc--CCCHHHeEEEeccHHHHHHHHHHHHHHhcc
Confidence 45679999999911110 01111 10 01 112235899999999999999999877654
No 156
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=37.83 E-value=9.1 Score=40.82 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=18.9
Q ss_pred chhccccCCcchhhhhhhhcCcCc
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPD 227 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~ 227 (858)
+-+.|+||||||.+...+|-.++.
T Consensus 6 i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTTE
T ss_pred EEEECCCcCCHHHHHHHHHHhCcc
Confidence 457899999999888887766653
No 157
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=37.70 E-value=27 Score=36.53 Aligned_cols=73 Identities=15% Similarity=0.016 Sum_probs=49.4
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcc------c-ccCC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIA------E-TSIT 490 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvA------e-rgld 490 (858)
...+||.+||++-+..+++.++..... .+++.+..++|+.....+. .....|||+|+=. . ..++
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~~l~~~l~~~~~~~ 232 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKF--YPELKLAYAVRGNKLERGQ-------KISEQIVIGTPGTVLDWCSKLKFID 232 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTT--STTCCEEEESTTCCCCTTC-------CCCCSEEEECHHHHHHHHTTTCCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhh--CCCcEEEEEeCCccHhhhh-------cCCCCEEEECHHHHHHHHHhcCCCC
Confidence 347999999999999988888865321 2356777777776543321 2345799999732 1 3567
Q ss_pred CCCeeEEE-c
Q psy2470 491 IPGIVYVI-D 499 (858)
Q Consensus 491 Ip~V~~VI-d 499 (858)
+.++.+|| |
T Consensus 233 l~~l~~lVlD 242 (300)
T 3fmo_B 233 PKKIKVFVLD 242 (300)
T ss_dssp GGGCSEEEET
T ss_pred hhhceEEEEe
Confidence 77888766 5
No 158
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=37.04 E-value=21 Score=44.64 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=48.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcce----EEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKL----LILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~----~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
..+.+||.+||++-+..+++.+++.... .++ .+..+||+.+..+|.+..+..++ ..|+|+|+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~---~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP 163 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEK---AGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTT 163 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTT---TCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEH
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhh---cCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcH
Confidence 3578999999999999999998865321 155 78999999999987666665554 78999996
No 159
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=36.56 E-value=26 Score=39.47 Aligned_cols=75 Identities=17% Similarity=0.309 Sum_probs=51.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcc-----ccc-C-C
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIA-----ETS-I-T 490 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvA-----erg-l-d 490 (858)
.+.+||.+|+++-+..+.+.+++.... .++.+..+||+.+...+...+. +...|+|+|+=. ..+ + .
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~ 124 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFER---LGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPS 124 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHT---TTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhcc---CCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCcccc
Confidence 678999999999999888888855321 2788999999997765543332 135799998522 121 3 4
Q ss_pred CCCeeEEE-c
Q psy2470 491 IPGIVYVI-D 499 (858)
Q Consensus 491 Ip~V~~VI-d 499 (858)
..++++|| |
T Consensus 125 ~~~~~~vViD 134 (555)
T 3tbk_A 125 LSVFTLMIFD 134 (555)
T ss_dssp GGGCSEEEET
T ss_pred cccCCEEEEE
Confidence 56666655 5
No 160
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=34.04 E-value=8.7 Score=35.48 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=11.5
Q ss_pred ccchhccccCCcch
Q psy2470 202 YQLRYIGQPEMGPL 215 (858)
Q Consensus 202 ~~~~~~a~TGSGKT 215 (858)
..+-+.|++|||||
T Consensus 25 ~~vll~G~~GtGKt 38 (145)
T 3n70_A 25 IAVWLYGAPGTGRM 38 (145)
T ss_dssp SCEEEESSTTSSHH
T ss_pred CCEEEECCCCCCHH
Confidence 34667899999999
No 161
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=34.01 E-value=26 Score=41.18 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=32.1
Q ss_pred ccceecchhhHHHhcccCc--ccccceeEeecccccccchhh
Q psy2470 645 TKIKYMTEGILMREMMTDP--LLRKYSVIMLDEVHERTIFTD 684 (858)
Q Consensus 645 T~i~~~~~G~lls~L~~dp--~l~~~~~~iide~her~~~~d 684 (858)
+.|.++|.|++...+-.+. .+..++++|+||+|+.....+
T Consensus 112 ~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~ 153 (696)
T 2ykg_A 112 NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHP 153 (696)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCH
T ss_pred CCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCccc
Confidence 4678889999999887653 478899999999999765443
No 162
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=33.48 E-value=35 Score=38.49 Aligned_cols=75 Identities=12% Similarity=0.169 Sum_probs=48.4
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcc-----ccc-C-C
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIA-----ETS-I-T 490 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvA-----erg-l-d 490 (858)
.+.+||.+|+++-+..+.+.+++.... .++.+..+||+.+..++...+. ....|+|+|+=. .++ + .
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~ 127 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFER---QGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTS 127 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGG---GTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcc---cCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCcccc
Confidence 678999999999999998888865221 2788999999997766543332 135699998522 122 3 5
Q ss_pred CCCeeEEE-c
Q psy2470 491 IPGIVYVI-D 499 (858)
Q Consensus 491 Ip~V~~VI-d 499 (858)
..++++|| |
T Consensus 128 ~~~~~~vViD 137 (556)
T 4a2p_A 128 LSIFTLMIFD 137 (556)
T ss_dssp STTCSEEEEE
T ss_pred cccCCEEEEE
Confidence 66777665 6
No 163
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=32.63 E-value=13 Score=39.86 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=19.8
Q ss_pred ccccchhccccCCcchhhhhhhhcCcC
Q psy2470 200 MPYQLRYIGQPEMGPLLLRVRRALDFP 226 (858)
Q Consensus 200 ~~~~~~~~a~TGSGKT~~~~~~a~~lP 226 (858)
|+--+-++|+||||||.....+|-.++
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 344566789999999977777665554
No 164
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=32.30 E-value=12 Score=38.25 Aligned_cols=20 Identities=15% Similarity=0.120 Sum_probs=15.1
Q ss_pred hhccccCCcchhhhhhhhcC
Q psy2470 205 RYIGQPEMGPLLLRVRRALD 224 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~ 224 (858)
-++|+||||||.....+|-.
T Consensus 5 ~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 5 LIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEECCTTSSHHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHhc
Confidence 46799999999776666533
No 165
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=32.12 E-value=13 Score=35.11 Aligned_cols=16 Identities=31% Similarity=0.333 Sum_probs=12.4
Q ss_pred ccccchhccccCCcch
Q psy2470 200 MPYQLRYIGQPEMGPL 215 (858)
Q Consensus 200 ~~~~~~~~a~TGSGKT 215 (858)
||.-+-+.|.+|||||
T Consensus 1 M~~~I~i~G~~GsGKS 16 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKS 16 (181)
T ss_dssp CCEEEEEECCTTSSHH
T ss_pred CCeEEEEecCCCCCHH
Confidence 3444567899999999
No 166
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=31.86 E-value=11 Score=40.56 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=19.2
Q ss_pred ccchhccccCCcchhhhhhhhcCcC
Q psy2470 202 YQLRYIGQPEMGPLLLRVRRALDFP 226 (858)
Q Consensus 202 ~~~~~~a~TGSGKT~~~~~~a~~lP 226 (858)
--+.|.|+||||||.....+|-.++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3467889999999977777765555
No 167
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=31.76 E-value=15 Score=46.82 Aligned_cols=57 Identities=14% Similarity=0.079 Sum_probs=33.7
Q ss_pred cchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHh
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEM 270 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~ 270 (858)
.+.+.|..|||||.+=+.. +. ..+.... .+-....+|++++|+.+|..+.+++.+.+
T Consensus 25 ~~~v~a~AGSGKT~vl~~r------i~---~ll~~~~--~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 25 DILVAAAAGSGKTAVLVER------MI---RKITAEE--NPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CEEEEECTTCCHHHHHHHH------HH---HHHSCSS--SCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCcHHHHHHHH------HH---HHHhcCC--CCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 3556799999999221111 11 1111100 01122368999999999999988886644
No 168
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=31.66 E-value=12 Score=36.05 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=13.7
Q ss_pred cccchhccccCCcchhh
Q psy2470 201 PYQLRYIGQPEMGPLLL 217 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~ 217 (858)
|.-+.++|.+|||||.+
T Consensus 8 ~~~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTV 24 (203)
T ss_dssp CEEEEEEECTTSCHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 55678899999999933
No 169
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=30.60 E-value=18 Score=35.61 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=20.2
Q ss_pred chhccccCCcchhhhhhhhcCcCc-ccccccc
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPD-MPYQLRY 234 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~-~~~~l~~ 234 (858)
+.++|++|||||...-.++-.+|. +.+...+
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~ 42 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDPETSFDYSISM 42 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHSTTCCCEECCCE
T ss_pred EEEECcCCCCHHHHHHHHHhhCCCcEEEEEec
Confidence 556799999999666666655553 4444333
No 170
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=30.13 E-value=12 Score=43.39 Aligned_cols=47 Identities=9% Similarity=-0.097 Sum_probs=28.2
Q ss_pred cchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHH
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEF 266 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v 266 (858)
-+-++|.+|||||..-.. +.. .+. . ....+++.+||..+|..+.+..
T Consensus 206 ~~~I~G~pGTGKTt~i~~-------l~~---~l~--~-----~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKA-------VAD---LAE--S-----LGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp EEEEECCTTSCHHHHHHH-------HHH---HHH--H-----TTCCEEEEESSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH-------HHH---HHH--h-----cCCeEEEecCcHHHHHHhHhhh
Confidence 456789999999921111 111 110 1 1135789999999987776543
No 171
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=29.20 E-value=44 Score=40.17 Aligned_cols=75 Identities=12% Similarity=0.163 Sum_probs=48.2
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCc-----cccc-C-C
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNI-----AETS-I-T 490 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdv-----Aerg-l-d 490 (858)
.+.+||.+|++.-+....+.+++.... .++.+..+||+.+...+...+. +...|+|+|+= ..++ + .
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~---~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~ 368 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFER---QGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTS 368 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGG---GTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhccc---CCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhccccc
Confidence 678999999999999988888865321 2788999999997776544332 13569999942 1222 3 4
Q ss_pred CCCeeEEE-c
Q psy2470 491 IPGIVYVI-D 499 (858)
Q Consensus 491 Ip~V~~VI-d 499 (858)
..++++|| |
T Consensus 369 ~~~~~~iViD 378 (797)
T 4a2q_A 369 LSIFTLMIFD 378 (797)
T ss_dssp GGGCSEEEET
T ss_pred cccCCEEEEE
Confidence 56677666 5
No 172
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=29.04 E-value=15 Score=35.46 Aligned_cols=26 Identities=8% Similarity=0.011 Sum_probs=17.0
Q ss_pred chhccccCCcchhhhhhhhcCcCccc
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMP 229 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~ 229 (858)
+.++|++|||||...-.++-.+|.+.
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~~~~~~ 35 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKALAEIK 35 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSSSEE
T ss_pred EEEECcCCCCHHHHHHHHHhhCCCeE
Confidence 45789999999855444443356433
No 173
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=28.82 E-value=17 Score=36.09 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=14.3
Q ss_pred chhccccCCcchhhhhhhhc
Q psy2470 204 LRYIGQPEMGPLLLRVRRAL 223 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~ 223 (858)
+-++|+||||||...+.++-
T Consensus 37 ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 37 VLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEECCCTTTTHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45789999999855544443
No 174
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=28.78 E-value=20 Score=34.57 Aligned_cols=29 Identities=21% Similarity=0.480 Sum_probs=19.6
Q ss_pred hHHHHHHHhcCCCCccccchhccccCCcch
Q psy2470 186 PLLLRVRRALDFPDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT 215 (858)
....++++.+.....+. +-+.|++|+|||
T Consensus 24 ~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT 52 (226)
T 2chg_A 24 EVIQRLKGYVERKNIPH-LLFSGPPGTGKT 52 (226)
T ss_dssp HHHHHHHHHHHTTCCCC-EEEECSTTSSHH
T ss_pred HHHHHHHHHHhCCCCCe-EEEECCCCCCHH
Confidence 34445556655544433 778899999999
No 175
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=27.46 E-value=17 Score=35.40 Aligned_cols=21 Identities=14% Similarity=0.090 Sum_probs=14.5
Q ss_pred ccchhccccCCcchhhhhhhh
Q psy2470 202 YQLRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 202 ~~~~~~a~TGSGKT~~~~~~a 222 (858)
.-+.++|..|||||.+.-.+|
T Consensus 3 ~~i~l~G~~GsGKST~~~~La 23 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 346678999999994444333
No 176
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=27.10 E-value=18 Score=35.39 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=19.5
Q ss_pred HHHHHHHhcCCCCccccchhccccCCcch
Q psy2470 187 LLLRVRRALDFPDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~a~TGSGKT 215 (858)
...++.+.+.....|..+-+.|++|+|||
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT 59 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKT 59 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHH
Confidence 33445555544454556678899999999
No 177
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=26.98 E-value=15 Score=34.98 Aligned_cols=14 Identities=29% Similarity=0.686 Sum_probs=11.7
Q ss_pred ccchhccccCCcch
Q psy2470 202 YQLRYIGQPEMGPL 215 (858)
Q Consensus 202 ~~~~~~a~TGSGKT 215 (858)
-.+-+.|++|||||
T Consensus 39 ~~~~l~G~~G~GKT 52 (180)
T 3ec2_A 39 KGLTFVGSPGVGKT 52 (180)
T ss_dssp CEEEECCSSSSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 34667899999999
No 178
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.70 E-value=24 Score=37.48 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=21.9
Q ss_pred hHHHHHHHhc-CCCCccccchhccccCCcch
Q psy2470 186 PLLLRVRRAL-DFPDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 186 ~~~~~~~~~~-~~~~~~~~~~~~a~TGSGKT 215 (858)
.+...+++.+ .....|+ +-+.|++|+|||
T Consensus 21 ~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKT 50 (354)
T 1sxj_E 21 ELTNFLKSLSDQPRDLPH-LLLYGPNGTGKK 50 (354)
T ss_dssp HHHHHHHTTTTCTTCCCC-EEEECSTTSSHH
T ss_pred HHHHHHHHHHhhCCCCCe-EEEECCCCCCHH
Confidence 3445566666 6666677 888999999999
No 179
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=26.39 E-value=15 Score=37.92 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=10.6
Q ss_pred chhccccCCcch
Q psy2470 204 LRYIGQPEMGPL 215 (858)
Q Consensus 204 ~~~~a~TGSGKT 215 (858)
+.++|+||||||
T Consensus 28 v~i~Gp~GsGKS 39 (261)
T 2eyu_A 28 ILVTGPTGSGKS 39 (261)
T ss_dssp EEEECSTTCSHH
T ss_pred EEEECCCCccHH
Confidence 557899999999
No 180
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=26.10 E-value=14 Score=34.04 Aligned_cols=13 Identities=8% Similarity=-0.100 Sum_probs=11.1
Q ss_pred cchhccccCCcch
Q psy2470 203 QLRYIGQPEMGPL 215 (858)
Q Consensus 203 ~~~~~a~TGSGKT 215 (858)
.+-+.|++|||||
T Consensus 29 ~vll~G~~GtGKt 41 (143)
T 3co5_A 29 PVFLTGEAGSPFE 41 (143)
T ss_dssp CEEEEEETTCCHH
T ss_pred cEEEECCCCccHH
Confidence 4567899999999
No 181
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=25.94 E-value=27 Score=32.61 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=18.1
Q ss_pred HHHHHHHhcCCCCccccchhccccCCcch
Q psy2470 187 LLLRVRRALDFPDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~a~TGSGKT 215 (858)
...++.+.+.... +-.+-++|++|||||
T Consensus 30 ~~~~l~~~l~~~~-~~~~ll~G~~G~GKT 57 (195)
T 1jbk_A 30 EIRRTIQVLQRRT-KNNPVLIGEPGVGKT 57 (195)
T ss_dssp HHHHHHHHHTSSS-SCEEEEECCTTSCHH
T ss_pred HHHHHHHHHhcCC-CCceEEECCCCCCHH
Confidence 3444555554433 334567899999999
No 182
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=25.39 E-value=20 Score=33.62 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=14.1
Q ss_pred cchhccccCCcchhhhhhhh
Q psy2470 203 QLRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a 222 (858)
.+.++|++|||||.+.-.+|
T Consensus 6 ~i~l~G~~GsGKSTl~~~La 25 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLA 25 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 46678999999994444433
No 183
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=25.05 E-value=16 Score=34.90 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=12.6
Q ss_pred chhccccCCcchhhhhhh
Q psy2470 204 LRYIGQPEMGPLLLRVRR 221 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~ 221 (858)
+.++|++|||||...-.+
T Consensus 8 i~i~GpsGsGKSTL~~~L 25 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTL 25 (180)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 446799999998444333
No 184
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=24.88 E-value=15 Score=40.50 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=18.3
Q ss_pred chhccccCCcchhhhhhhhcCcC
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFP 226 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP 226 (858)
+-|.|+||||||.+...+|-.++
T Consensus 5 i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEECcchhhHHHHHHHHHHHCC
Confidence 45789999999988887776555
No 185
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=24.70 E-value=17 Score=39.53 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=13.6
Q ss_pred HHhcCCCCccccchhccccCCcch
Q psy2470 192 RRALDFPDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 192 ~~~~~~~~~~~~~~~~a~TGSGKT 215 (858)
...++..+.. +=-.||||||||
T Consensus 98 ~~~l~G~N~t--ifAYGQTGSGKT 119 (359)
T 3nwn_A 98 SQALDGYNGT--IMCYGQTGAGKT 119 (359)
T ss_dssp HHHHTTCCEE--EEEEESTTSSHH
T ss_pred HHHhCCCCEE--EEEeCCCCCCcc
Confidence 3444444422 333699999999
No 186
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=24.66 E-value=21 Score=35.24 Aligned_cols=14 Identities=14% Similarity=0.012 Sum_probs=12.0
Q ss_pred ccchhccccCCcch
Q psy2470 202 YQLRYIGQPEMGPL 215 (858)
Q Consensus 202 ~~~~~~a~TGSGKT 215 (858)
..+.++|++|||||
T Consensus 6 ~~i~i~G~~GsGKS 19 (227)
T 1cke_A 6 PVITIDGPSGAGKG 19 (227)
T ss_dssp CEEEEECCTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 35778999999998
No 187
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=24.41 E-value=17 Score=34.51 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=10.1
Q ss_pred chhccccCCcch
Q psy2470 204 LRYIGQPEMGPL 215 (858)
Q Consensus 204 ~~~~a~TGSGKT 215 (858)
+.++|++|||||
T Consensus 12 ~~l~G~nGsGKS 23 (171)
T 4gp7_A 12 VVLIGSSGSGKS 23 (171)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECCCCCCHH
Confidence 346899999998
No 188
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=24.40 E-value=18 Score=38.75 Aligned_cols=9 Identities=33% Similarity=0.453 Sum_probs=8.5
Q ss_pred ccccCCcch
Q psy2470 207 IGQPEMGPL 215 (858)
Q Consensus 207 ~a~TGSGKT 215 (858)
.||||||||
T Consensus 84 YGqTGSGKT 92 (325)
T 1bg2_A 84 YGQTSSGKT 92 (325)
T ss_dssp ECSTTSSHH
T ss_pred ECCCCCCCc
Confidence 699999999
No 189
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=24.38 E-value=17 Score=33.84 Aligned_cols=11 Identities=36% Similarity=0.341 Sum_probs=9.8
Q ss_pred hhccccCCcch
Q psy2470 205 RYIGQPEMGPL 215 (858)
Q Consensus 205 ~~~a~TGSGKT 215 (858)
.|+|++|||||
T Consensus 27 ~I~G~NGsGKS 37 (149)
T 1f2t_A 27 LIIGQNGSGKS 37 (149)
T ss_dssp EEECCTTSSHH
T ss_pred EEECCCCCCHH
Confidence 36899999999
No 190
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=24.15 E-value=89 Score=37.64 Aligned_cols=72 Identities=10% Similarity=0.112 Sum_probs=53.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----------cc-
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----------IA- 485 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----------vA- 485 (858)
+..++|.+||++=+...++.+...... .|+++..+.|+++.++|..... ..|+++|| ++
T Consensus 124 g~~vlVltptreLA~qd~e~~~~l~~~---lgl~v~~i~gg~~~~~r~~~~~------~dIv~gTpgrlgfD~L~D~m~~ 194 (844)
T 1tf5_A 124 GKGVHVVTVNEYLASRDAEQMGKIFEF---LGLTVGLNLNSMSKDEKREAYA------ADITYSTNNELGFDYLRDNMVL 194 (844)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHH---TTCCEEECCTTSCHHHHHHHHH------SSEEEEEHHHHHHHHHHHTTCS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhh---cCCeEEEEeCCCCHHHHHHhcC------CCEEEECchhhhHHHHHHhhhc
Confidence 457999999999888888877754322 2899999999999988877652 47999997 11
Q ss_pred -cccCCCCCeeEEE
Q psy2470 486 -ETSITIPGIVYVI 498 (858)
Q Consensus 486 -ergldIp~V~~VI 498 (858)
...+...++.|+|
T Consensus 195 ~~~~l~lr~~~~lV 208 (844)
T 1tf5_A 195 YKEQMVQRPLHFAV 208 (844)
T ss_dssp SGGGCCCCCCCEEE
T ss_pred chhhhcccCCCEEE
Confidence 1135667888776
No 191
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=24.13 E-value=18 Score=34.43 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=9.8
Q ss_pred hhccccCCcch
Q psy2470 205 RYIGQPEMGPL 215 (858)
Q Consensus 205 ~~~a~TGSGKT 215 (858)
.++|++|||||
T Consensus 30 ~i~G~NGsGKS 40 (182)
T 3kta_A 30 AIVGANGSGKS 40 (182)
T ss_dssp EEEECTTSSHH
T ss_pred EEECCCCCCHH
Confidence 36899999999
No 192
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=24.03 E-value=18 Score=39.26 Aligned_cols=9 Identities=33% Similarity=0.416 Sum_probs=8.5
Q ss_pred ccccCCcch
Q psy2470 207 IGQPEMGPL 215 (858)
Q Consensus 207 ~a~TGSGKT 215 (858)
.||||||||
T Consensus 91 YGqTGSGKT 99 (360)
T 1ry6_A 91 YGQTGSGKT 99 (360)
T ss_dssp ECCTTSSHH
T ss_pred eCCCCCCCC
Confidence 699999999
No 193
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=23.89 E-value=21 Score=33.87 Aligned_cols=20 Identities=20% Similarity=0.184 Sum_probs=14.5
Q ss_pred cchhccccCCcchhhhhhhh
Q psy2470 203 QLRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a 222 (858)
.+-++|.+|||||...-.+|
T Consensus 7 ~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 34568999999995555544
No 194
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=23.76 E-value=18 Score=38.93 Aligned_cols=9 Identities=33% Similarity=0.416 Sum_probs=8.5
Q ss_pred ccccCCcch
Q psy2470 207 IGQPEMGPL 215 (858)
Q Consensus 207 ~a~TGSGKT 215 (858)
.||||||||
T Consensus 101 YGQTGSGKT 109 (344)
T 3dc4_A 101 YGQTGTGKS 109 (344)
T ss_dssp ESSTTSSHH
T ss_pred ecCCCCCCC
Confidence 699999999
No 195
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=23.70 E-value=19 Score=35.23 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=12.9
Q ss_pred cccchhccccCCcchh
Q psy2470 201 PYQLRYIGQPEMGPLL 216 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~ 216 (858)
.--+.++|++|||||.
T Consensus 22 g~~v~I~G~sGsGKST 37 (208)
T 3c8u_A 22 RQLVALSGAPGSGKST 37 (208)
T ss_dssp CEEEEEECCTTSCTHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4556788999999983
No 196
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=23.48 E-value=90 Score=37.62 Aligned_cols=72 Identities=10% Similarity=0.028 Sum_probs=52.1
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCc------ccc----
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNI------AET---- 487 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdv------Aer---- 487 (858)
..+++|-+||++=+...++.+...... .++++..++|+++.++|..... ..|+|+||= ...
T Consensus 115 g~~vlVltPTreLA~Q~~e~~~~l~~~---lgl~v~~i~GG~~~~~r~~~~~------~dIvvgTpgrl~fDyLrd~~~~ 185 (853)
T 2fsf_A 115 GKGVHVVTVNDYLAQRDAENNRPLFEF---LGLTVGINLPGMPAPAKREAYA------ADITYGTNNEYGFDYLRDNMAF 185 (853)
T ss_dssp SSCCEEEESSHHHHHHHHHHHHHHHHH---TTCCEEECCTTCCHHHHHHHHH------SSEEEEEHHHHHHHHHHHTTCS
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHHh---cCCeEEEEeCCCCHHHHHHhcC------CCEEEECCchhhHHHHHhhhhc
Confidence 457999999999888888777644322 2889999999999887766552 579999971 111
Q ss_pred ---cCCCCCeeEEE
Q psy2470 488 ---SITIPGIVYVI 498 (858)
Q Consensus 488 ---gldIp~V~~VI 498 (858)
.+...++.++|
T Consensus 186 ~~~~~~~~~l~~lV 199 (853)
T 2fsf_A 186 SPEERVQRKLHYAL 199 (853)
T ss_dssp SGGGCCCCSCCEEE
T ss_pred cHhHhcccCCcEEE
Confidence 24557777766
No 197
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=23.27 E-value=20 Score=33.30 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=10.9
Q ss_pred cchhccccCCcch
Q psy2470 203 QLRYIGQPEMGPL 215 (858)
Q Consensus 203 ~~~~~a~TGSGKT 215 (858)
.+.++|++|||||
T Consensus 38 ~~~l~G~~G~GKT 50 (149)
T 2kjq_A 38 FIYVWGEEGAGKS 50 (149)
T ss_dssp EEEEESSSTTTTC
T ss_pred EEEEECCCCCCHH
Confidence 3556899999999
No 198
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=23.20 E-value=23 Score=33.33 Aligned_cols=20 Identities=10% Similarity=-0.067 Sum_probs=13.8
Q ss_pred cchhccccCCcchhhhhhhh
Q psy2470 203 QLRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a 222 (858)
-+-++|.+|||||.+.-.+|
T Consensus 5 ~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35568999999994444443
No 199
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=23.01 E-value=28 Score=36.34 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=13.7
Q ss_pred ccccchhccccCCcch
Q psy2470 200 MPYQLRYIGQPEMGPL 215 (858)
Q Consensus 200 ~~~~~~~~a~TGSGKT 215 (858)
.|..+-+.|++|||||
T Consensus 35 ~p~~lLl~GppGtGKT 50 (293)
T 3t15_A 35 VPLILGIWGGKGQGKS 50 (293)
T ss_dssp CCSEEEEEECTTSCHH
T ss_pred CCeEEEEECCCCCCHH
Confidence 3677778899999999
No 200
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=22.95 E-value=19 Score=39.02 Aligned_cols=13 Identities=15% Similarity=0.118 Sum_probs=11.3
Q ss_pred cchhccccCCcch
Q psy2470 203 QLRYIGQPEMGPL 215 (858)
Q Consensus 203 ~~~~~a~TGSGKT 215 (858)
-+.++|+||||||
T Consensus 125 ~i~I~GptGSGKT 137 (356)
T 3jvv_A 125 LVLVTGPTGSGKS 137 (356)
T ss_dssp EEEEECSTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 4668899999999
No 201
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=22.92 E-value=20 Score=38.77 Aligned_cols=9 Identities=33% Similarity=0.416 Sum_probs=8.5
Q ss_pred ccccCCcch
Q psy2470 207 IGQPEMGPL 215 (858)
Q Consensus 207 ~a~TGSGKT 215 (858)
.||||||||
T Consensus 91 YGqTGSGKT 99 (347)
T 1f9v_A 91 YGQTGSGKT 99 (347)
T ss_dssp ECCTTSSHH
T ss_pred ECCCCCCCc
Confidence 699999999
No 202
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=22.91 E-value=20 Score=38.81 Aligned_cols=9 Identities=33% Similarity=0.442 Sum_probs=8.5
Q ss_pred ccccCCcch
Q psy2470 207 IGQPEMGPL 215 (858)
Q Consensus 207 ~a~TGSGKT 215 (858)
.||||||||
T Consensus 96 YGqTGSGKT 104 (350)
T 2vvg_A 96 YGQTGAGKT 104 (350)
T ss_dssp ECSTTSSHH
T ss_pred ecCCCCCCC
Confidence 699999999
No 203
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=22.91 E-value=20 Score=38.48 Aligned_cols=9 Identities=33% Similarity=0.442 Sum_probs=8.5
Q ss_pred ccccCCcch
Q psy2470 207 IGQPEMGPL 215 (858)
Q Consensus 207 ~a~TGSGKT 215 (858)
.||||||||
T Consensus 87 YGqTGSGKT 95 (330)
T 2h58_A 87 YGQTGAGKT 95 (330)
T ss_dssp ESSTTSSHH
T ss_pred ECCCCCCCc
Confidence 699999999
No 204
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=22.67 E-value=20 Score=38.99 Aligned_cols=9 Identities=33% Similarity=0.453 Sum_probs=8.5
Q ss_pred ccccCCcch
Q psy2470 207 IGQPEMGPL 215 (858)
Q Consensus 207 ~a~TGSGKT 215 (858)
.||||||||
T Consensus 91 YGqTGSGKT 99 (365)
T 2y65_A 91 YGQTSSGKT 99 (365)
T ss_dssp ECSTTSSHH
T ss_pred ecCCCCCCc
Confidence 699999999
No 205
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=22.64 E-value=23 Score=34.85 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=10.8
Q ss_pred hhccccCCcchhh
Q psy2470 205 RYIGQPEMGPLLL 217 (858)
Q Consensus 205 ~~~a~TGSGKT~~ 217 (858)
-++|.+|||||..
T Consensus 9 l~tG~pGsGKT~~ 21 (199)
T 2r2a_A 9 LITGTPGSGKTLK 21 (199)
T ss_dssp EEECCTTSSHHHH
T ss_pred EEEeCCCCCHHHH
Confidence 3799999999943
No 206
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=22.49 E-value=26 Score=34.87 Aligned_cols=25 Identities=8% Similarity=0.004 Sum_probs=11.2
Q ss_pred chhccccCCcchhhhhhhh-cCcCcc
Q psy2470 204 LRYIGQPEMGPLLLRVRRA-LDFPDM 228 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a-~~lP~~ 228 (858)
+.++|++|||||.+.-.++ -.+|.+
T Consensus 30 i~l~Gp~GsGKSTl~~~L~~~~~~~~ 55 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLLEKQKNNI 55 (231)
T ss_dssp EEEECSCC----CHHHHHHC----CE
T ss_pred EEEECCCCCCHHHHHHHHHhcCCCCc
Confidence 4578999999985555555 445543
No 207
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=22.30 E-value=57 Score=31.35 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=36.9
Q ss_pred CCCCEEEEcCCHHHHHH-HHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 417 PVGDILAFVIGLEQIEH-IIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~-l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
..+.+||.+|+.+-++. +.+.+++... .++.+..++|+.....+...+. +...|+|+|+
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~----~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLK----KWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHT----TTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhc----cCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 36789999999988887 6666665422 1577888998865543322211 1356889885
No 208
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=22.30 E-value=26 Score=44.04 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=30.7
Q ss_pred ccceecchhhHHHhcccCcc-cccceeEeecccccc
Q psy2470 645 TKIKYMTEGILMREMMTDPL-LRKYSVIMLDEVHER 679 (858)
Q Consensus 645 T~i~~~~~G~lls~L~~dp~-l~~~~~~iide~her 679 (858)
+.|.++|.|++.+.+.-++. +.++++||+||+|.-
T Consensus 267 ~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l 302 (1108)
T 3l9o_A 267 AGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYM 302 (1108)
T ss_dssp CSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGT
T ss_pred CCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhc
Confidence 57899999999999988765 789999999999954
No 209
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=22.18 E-value=24 Score=33.49 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=13.9
Q ss_pred chhccccCCcchhhhhhhh
Q psy2470 204 LRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a 222 (858)
+.++|.+|||||.+.-.+|
T Consensus 5 I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5678999999995544443
No 210
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=21.94 E-value=24 Score=34.16 Aligned_cols=19 Identities=21% Similarity=0.060 Sum_probs=13.6
Q ss_pred chhccccCCcchhhhhhhh
Q psy2470 204 LRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a 222 (858)
+-++|.+|||||.+.-.+|
T Consensus 28 i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 28 IFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4467999999995554444
No 211
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=21.85 E-value=20 Score=39.53 Aligned_cols=9 Identities=33% Similarity=0.416 Sum_probs=8.5
Q ss_pred ccccCCcch
Q psy2470 207 IGQPEMGPL 215 (858)
Q Consensus 207 ~a~TGSGKT 215 (858)
.||||||||
T Consensus 161 YGQTGSGKT 169 (410)
T 1v8k_A 161 YGQTGSGKT 169 (410)
T ss_dssp EESTTSSHH
T ss_pred ecCCCCCCC
Confidence 699999999
No 212
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=21.80 E-value=21 Score=38.51 Aligned_cols=9 Identities=33% Similarity=0.416 Sum_probs=8.5
Q ss_pred ccccCCcch
Q psy2470 207 IGQPEMGPL 215 (858)
Q Consensus 207 ~a~TGSGKT 215 (858)
.||||||||
T Consensus 92 YGqTGSGKT 100 (349)
T 3t0q_A 92 YGQTGSGKT 100 (349)
T ss_dssp ECSTTSSHH
T ss_pred eCCCCCCCc
Confidence 699999999
No 213
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=21.77 E-value=20 Score=38.81 Aligned_cols=10 Identities=30% Similarity=0.328 Sum_probs=8.9
Q ss_pred hccccCCcch
Q psy2470 206 YIGQPEMGPL 215 (858)
Q Consensus 206 ~~a~TGSGKT 215 (858)
-.||||||||
T Consensus 94 AYGqTGSGKT 103 (359)
T 1x88_A 94 AYGQTGTGKT 103 (359)
T ss_dssp EEECTTSSHH
T ss_pred EeCCCCCCCc
Confidence 3699999999
No 214
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=21.74 E-value=21 Score=39.06 Aligned_cols=9 Identities=33% Similarity=0.416 Sum_probs=8.5
Q ss_pred ccccCCcch
Q psy2470 207 IGQPEMGPL 215 (858)
Q Consensus 207 ~a~TGSGKT 215 (858)
.||||||||
T Consensus 141 YGQTGSGKT 149 (387)
T 2heh_A 141 YGQTGSGKT 149 (387)
T ss_dssp ESCTTSSHH
T ss_pred ecCCCCCCC
Confidence 699999999
No 215
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=21.68 E-value=21 Score=38.75 Aligned_cols=9 Identities=33% Similarity=0.412 Sum_probs=8.5
Q ss_pred ccccCCcch
Q psy2470 207 IGQPEMGPL 215 (858)
Q Consensus 207 ~a~TGSGKT 215 (858)
.||||||||
T Consensus 96 YGqTGSGKT 104 (366)
T 2zfi_A 96 YGQTGAGKS 104 (366)
T ss_dssp ECSTTSSHH
T ss_pred eCCCCCCCc
Confidence 699999999
No 216
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=21.51 E-value=21 Score=34.50 Aligned_cols=14 Identities=21% Similarity=0.131 Sum_probs=11.8
Q ss_pred ccchhccccCCcch
Q psy2470 202 YQLRYIGQPEMGPL 215 (858)
Q Consensus 202 ~~~~~~a~TGSGKT 215 (858)
-.+-+.|++|||||
T Consensus 55 ~~~~l~G~~GtGKT 68 (202)
T 2w58_A 55 KGLYLHGSFGVGKT 68 (202)
T ss_dssp CEEEEECSTTSSHH
T ss_pred CeEEEECCCCCCHH
Confidence 45667899999999
No 217
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=21.46 E-value=22 Score=38.52 Aligned_cols=10 Identities=30% Similarity=0.298 Sum_probs=8.9
Q ss_pred hccccCCcch
Q psy2470 206 YIGQPEMGPL 215 (858)
Q Consensus 206 ~~a~TGSGKT 215 (858)
-.||||||||
T Consensus 86 AYGqTGSGKT 95 (355)
T 1goj_A 86 AYGQTGAGKS 95 (355)
T ss_dssp EECSTTSSHH
T ss_pred EECCCCCCcc
Confidence 3699999999
No 218
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=21.42 E-value=26 Score=32.54 Aligned_cols=18 Identities=6% Similarity=-0.143 Sum_probs=12.5
Q ss_pred chhccccCCcchhhhhhh
Q psy2470 204 LRYIGQPEMGPLLLRVRR 221 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~ 221 (858)
+-++|..|||||.+.-.+
T Consensus 4 i~l~G~~GsGKsT~~~~L 21 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKL 21 (173)
T ss_dssp EEEECSSSSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 346799999999444433
No 219
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=21.35 E-value=19 Score=33.69 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=16.3
Q ss_pred HHHHHhcCCCCccccchhccccCCcch
Q psy2470 189 LRVRRALDFPDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~a~TGSGKT 215 (858)
.++.+.+.... +-.+-+.|++|||||
T Consensus 32 ~~l~~~l~~~~-~~~vll~G~~G~GKT 57 (187)
T 2p65_A 32 RRAIQILSRRT-KNNPILLGDPGVGKT 57 (187)
T ss_dssp HHHHHHHTSSS-SCEEEEESCGGGCHH
T ss_pred HHHHHHHhCCC-CCceEEECCCCCCHH
Confidence 34444443322 334567899999999
No 220
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=21.35 E-value=22 Score=38.50 Aligned_cols=9 Identities=22% Similarity=0.335 Sum_probs=8.5
Q ss_pred ccccCCcch
Q psy2470 207 IGQPEMGPL 215 (858)
Q Consensus 207 ~a~TGSGKT 215 (858)
.||||||||
T Consensus 112 YGqTGSGKT 120 (355)
T 3lre_A 112 YGATGAGKT 120 (355)
T ss_dssp ECCTTSSHH
T ss_pred eCCCCCCce
Confidence 699999999
No 221
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=21.29 E-value=21 Score=38.51 Aligned_cols=9 Identities=33% Similarity=0.446 Sum_probs=8.5
Q ss_pred ccccCCcch
Q psy2470 207 IGQPEMGPL 215 (858)
Q Consensus 207 ~a~TGSGKT 215 (858)
.||||||||
T Consensus 84 YGqTGSGKT 92 (349)
T 1t5c_A 84 YGQTASGKT 92 (349)
T ss_dssp EESTTSSHH
T ss_pred ecCCCCCCC
Confidence 699999999
No 222
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=21.27 E-value=20 Score=34.97 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=14.8
Q ss_pred cccchhccccCCcchhhhhhh
Q psy2470 201 PYQLRYIGQPEMGPLLLRVRR 221 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~~ 221 (858)
+.-+.++|++|||||.+.-..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l 26 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQAL 26 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHH
Confidence 345678899999998544333
No 223
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=21.26 E-value=22 Score=34.28 Aligned_cols=11 Identities=27% Similarity=0.537 Sum_probs=9.8
Q ss_pred hhccccCCcch
Q psy2470 205 RYIGQPEMGPL 215 (858)
Q Consensus 205 ~~~a~TGSGKT 215 (858)
.++|++|||||
T Consensus 4 ~l~G~nGsGKT 14 (178)
T 1ye8_A 4 IITGEPGVGKT 14 (178)
T ss_dssp EEECCTTSSHH
T ss_pred EEECCCCCCHH
Confidence 46899999999
No 224
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=21.24 E-value=21 Score=38.85 Aligned_cols=9 Identities=33% Similarity=0.445 Sum_probs=8.5
Q ss_pred ccccCCcch
Q psy2470 207 IGQPEMGPL 215 (858)
Q Consensus 207 ~a~TGSGKT 215 (858)
.||||||||
T Consensus 108 YGqTGSGKT 116 (372)
T 3b6u_A 108 YGQTGTGKT 116 (372)
T ss_dssp EESTTSSHH
T ss_pred ecCCCCCCC
Confidence 699999999
No 225
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=21.19 E-value=21 Score=38.80 Aligned_cols=9 Identities=33% Similarity=0.416 Sum_probs=8.5
Q ss_pred ccccCCcch
Q psy2470 207 IGQPEMGPL 215 (858)
Q Consensus 207 ~a~TGSGKT 215 (858)
.||||||||
T Consensus 86 YGqTGSGKT 94 (369)
T 3cob_A 86 YGQTGSGKT 94 (369)
T ss_dssp EECTTSSHH
T ss_pred ECCCCCCCe
Confidence 699999999
No 226
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=21.15 E-value=25 Score=33.52 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=13.9
Q ss_pred cchhccccCCcchhhhhhhh
Q psy2470 203 QLRYIGQPEMGPLLLRVRRA 222 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a 222 (858)
-+.++|++|||||...-.++
T Consensus 11 ~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35678999999984444433
No 227
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=21.08 E-value=22 Score=34.69 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=10.3
Q ss_pred chhccccCCcch
Q psy2470 204 LRYIGQPEMGPL 215 (858)
Q Consensus 204 ~~~~a~TGSGKT 215 (858)
+.++|++|||||
T Consensus 7 i~lvGpsGaGKS 18 (198)
T 1lvg_A 7 VVLSGPSGAGKS 18 (198)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 456899999998
No 228
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=21.04 E-value=35 Score=35.29 Aligned_cols=16 Identities=19% Similarity=0.528 Sum_probs=13.1
Q ss_pred cccchhccccCCcchh
Q psy2470 201 PYQLRYIGQPEMGPLL 216 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~ 216 (858)
+..+-+.|++|||||.
T Consensus 67 ~~~vll~G~~GtGKT~ 82 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTT 82 (309)
T ss_dssp CCEEEEEECTTSSHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 4567788999999993
No 229
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=20.94 E-value=23 Score=38.67 Aligned_cols=9 Identities=33% Similarity=0.445 Sum_probs=8.5
Q ss_pred ccccCCcch
Q psy2470 207 IGQPEMGPL 215 (858)
Q Consensus 207 ~a~TGSGKT 215 (858)
.||||||||
T Consensus 107 YGqTGSGKT 115 (373)
T 2wbe_C 107 YGQTGTGKT 115 (373)
T ss_dssp ECSTTSSHH
T ss_pred ecCCCCCcc
Confidence 699999999
No 230
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=20.90 E-value=29 Score=40.94 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=21.3
Q ss_pred CEEEccchHHHHHHHHHHHHHHhCC
Q psy2470 248 PTIVRSSIDVACSCTVVEFLTEMGC 272 (858)
Q Consensus 248 ~~LVl~PtR~la~qva~~v~~e~g~ 272 (858)
++||++|+..+|.|++..+..-++.
T Consensus 55 ~~lvv~~~~~~A~ql~~el~~~~~~ 79 (664)
T 1c4o_A 55 PALVLAPNKILAAQLAAEFRELFPE 79 (664)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHCTT
T ss_pred CEEEEecCHHHHHHHHHHHHHHCCC
Confidence 5899999999999999998766553
No 231
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=20.85 E-value=37 Score=35.07 Aligned_cols=29 Identities=21% Similarity=0.480 Sum_probs=21.9
Q ss_pred hHHHHHHHhcCCCCccccchhccccCCcch
Q psy2470 186 PLLLRVRRALDFPDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT 215 (858)
.....+++.+.....|. +-+.|++|+|||
T Consensus 24 ~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt 52 (319)
T 2chq_A 24 EVIQRLKGYVERKNIPH-LLFSGPPGTGKT 52 (319)
T ss_dssp HHHHHHHTTTTTTCCCC-EEEESSSSSSHH
T ss_pred HHHHHHHHHHhCCCCCe-EEEECcCCcCHH
Confidence 44456677776666666 778999999999
No 232
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=20.80 E-value=23 Score=38.17 Aligned_cols=9 Identities=33% Similarity=0.416 Sum_probs=8.5
Q ss_pred ccccCCcch
Q psy2470 207 IGQPEMGPL 215 (858)
Q Consensus 207 ~a~TGSGKT 215 (858)
.||||||||
T Consensus 90 YGqTGSGKT 98 (344)
T 4a14_A 90 YGQTGSGKT 98 (344)
T ss_dssp ESSTTSSHH
T ss_pred ecccCCCce
Confidence 699999999
No 233
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=20.70 E-value=23 Score=38.80 Aligned_cols=9 Identities=22% Similarity=0.335 Sum_probs=8.5
Q ss_pred ccccCCcch
Q psy2470 207 IGQPEMGPL 215 (858)
Q Consensus 207 ~a~TGSGKT 215 (858)
.||||||||
T Consensus 105 YGqTGSGKT 113 (388)
T 3bfn_A 105 YGPTGAGKT 113 (388)
T ss_dssp ESCTTSSHH
T ss_pred ecCCCCCCC
Confidence 699999999
No 234
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=20.63 E-value=23 Score=38.62 Aligned_cols=9 Identities=33% Similarity=0.416 Sum_probs=8.5
Q ss_pred ccccCCcch
Q psy2470 207 IGQPEMGPL 215 (858)
Q Consensus 207 ~a~TGSGKT 215 (858)
.||||||||
T Consensus 122 YGqTGSGKT 130 (376)
T 2rep_A 122 YGQTGSGKT 130 (376)
T ss_dssp ECSTTSSHH
T ss_pred eCCCCCCCc
Confidence 699999999
No 235
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.54 E-value=33 Score=36.36 Aligned_cols=28 Identities=29% Similarity=0.534 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCCCccccchhccccCCcch
Q psy2470 187 LLLRVRRALDFPDMPYQLRYIGQPEMGPL 215 (858)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~a~TGSGKT 215 (858)
+...+......+..|+ +-+.|++|||||
T Consensus 33 ~~~~L~~~i~~g~~~~-~ll~Gp~G~GKT 60 (340)
T 1sxj_C 33 VITTVRKFVDEGKLPH-LLFYGPPGTGKT 60 (340)
T ss_dssp HHHHHHHHHHTTCCCC-EEEECSSSSSHH
T ss_pred HHHHHHHHHhcCCCce-EEEECCCCCCHH
Confidence 4445666666666676 778999999999
No 236
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=20.51 E-value=48 Score=32.77 Aligned_cols=11 Identities=18% Similarity=0.190 Sum_probs=9.6
Q ss_pred hhccccCCcch
Q psy2470 205 RYIGQPEMGPL 215 (858)
Q Consensus 205 ~~~a~TGSGKT 215 (858)
.+.|.+|||||
T Consensus 34 ~i~G~pG~GKT 44 (251)
T 2zts_A 34 LLTGGTGTGKT 44 (251)
T ss_dssp EEECCTTSSHH
T ss_pred EEEeCCCCCHH
Confidence 45799999999
No 237
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.27 E-value=24 Score=38.93 Aligned_cols=9 Identities=33% Similarity=0.416 Sum_probs=8.5
Q ss_pred ccccCCcch
Q psy2470 207 IGQPEMGPL 215 (858)
Q Consensus 207 ~a~TGSGKT 215 (858)
.||||||||
T Consensus 147 YGqTGSGKT 155 (403)
T 4etp_A 147 YGQTGSGKT 155 (403)
T ss_dssp ESCTTSSHH
T ss_pred ECCCCCCCc
Confidence 699999999
No 238
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=20.27 E-value=28 Score=35.58 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=14.3
Q ss_pred ccccchhccccCCcchhh
Q psy2470 200 MPYQLRYIGQPEMGPLLL 217 (858)
Q Consensus 200 ~~~~~~~~a~TGSGKT~~ 217 (858)
.+..+-+.|++|||||.+
T Consensus 63 ~~~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTAL 80 (272)
T ss_dssp SEEEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCcHHHH
Confidence 466777889999999933
No 239
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=20.20 E-value=23 Score=32.75 Aligned_cols=11 Identities=27% Similarity=0.347 Sum_probs=9.6
Q ss_pred hhccccCCcch
Q psy2470 205 RYIGQPEMGPL 215 (858)
Q Consensus 205 ~~~a~TGSGKT 215 (858)
-+.|.+|||||
T Consensus 5 ~l~G~~GsGKs 15 (179)
T 3lw7_A 5 LITGMPGSGKS 15 (179)
T ss_dssp EEECCTTSCHH
T ss_pred EEECCCCCCHH
Confidence 46799999999
No 240
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=20.11 E-value=23 Score=38.28 Aligned_cols=9 Identities=33% Similarity=0.386 Sum_probs=8.4
Q ss_pred ccccCCcch
Q psy2470 207 IGQPEMGPL 215 (858)
Q Consensus 207 ~a~TGSGKT 215 (858)
.||||||||
T Consensus 99 YGqTGSGKT 107 (354)
T 3gbj_A 99 YGQTGSGKS 107 (354)
T ss_dssp EECTTSSHH
T ss_pred eCCCCCCCc
Confidence 699999999
No 241
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=20.06 E-value=34 Score=33.08 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=16.1
Q ss_pred CccccchhccccCCcchhhhhhh
Q psy2470 199 DMPYQLRYIGQPEMGPLLLRVRR 221 (858)
Q Consensus 199 ~~~~~~~~~a~TGSGKT~~~~~~ 221 (858)
..|.-+-++|.+|||||...-.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 34656778899999999444433
No 242
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=20.05 E-value=31 Score=32.71 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=14.9
Q ss_pred ccccchhccccCCcchhhhhh
Q psy2470 200 MPYQLRYIGQPEMGPLLLRVR 220 (858)
Q Consensus 200 ~~~~~~~~a~TGSGKT~~~~~ 220 (858)
||.-+.++|.+|||||...-.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHH
Confidence 444567789999999944333
Done!