RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2470
(858 letters)
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 97.0 bits (241), Expect = 1e-22
Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 16/151 (10%)
Query: 394 SNDPVVNYVQGVVDTAIK-IHESMPV--GDILAFVIGLEQIEHIIGILKQYHNQREDLKL 450
SN + + + H+ + F+ + + L++
Sbjct: 9 SNGEIEDVQTDIPSEPWNTGHDWILADKRPTAWFLPSIRAANVMAASLRKAG-------K 61
Query: 451 LILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGF-VKARWFN 509
++ ++ E + + P ++AT+IAE + + V+D K +
Sbjct: 62 SVVVLNRKTFEREYPTIKQKKP----DFILATDIAEMGANL-CVERVLDCRTAFKPVLVD 116
Query: 510 PNTLTNSLVVVPISKASAVQRAGRAGRVRSG 540
+ IS +SA QR GR GR +
Sbjct: 117 EGRKVAIKGPLRISASSAAQRRGRIGRNPNR 147
Score = 50.4 bits (120), Expect = 4e-07
Identities = 9/91 (9%), Positives = 24/91 (26%), Gaps = 5/91 (5%)
Query: 54 SQLNECTPPEMQRTE----LSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLG 109
+E + E L + ++ + + + P + +
Sbjct: 156 EPTSENNAHHVCWLEASMLLDNMEVRGGMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFRE 215
Query: 110 AMDVNGNLTKPVGETMAEMPLHPIHAKVLLS 140
+ N +L + +A+ L K
Sbjct: 216 LVR-NCDLPVWLSWQVAKAGLKTNDRKWCFE 245
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 76.5 bits (187), Expect = 1e-15
Identities = 30/181 (16%), Positives = 57/181 (31%), Gaps = 20/181 (11%)
Query: 366 CQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFV 425
++A+ + P+ P ++ G + G + FV
Sbjct: 132 AAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGH------EWVTDFKGKTVWFV 185
Query: 426 IGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIA 485
++ I L++ ++ + ++E IK T V+ T+I+
Sbjct: 186 PSIKAGNDIAACLRK-------NGKKVIQLSRKTFDSEYIK----TRTNDWDFVVTTDIS 234
Query: 486 ETSITIPGIVYVIDPGFVKAR--WFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVY 543
E VIDP + +P++ +SA QR GR GR
Sbjct: 235 EMGANFK-AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNEND 293
Query: 544 R 544
+
Sbjct: 294 Q 294
Score = 60.3 bits (145), Expect = 3e-10
Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 8/115 (6%)
Query: 585 FFQYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDV 644
+ ++ + I P R+ +A + E LR G + Y
Sbjct: 26 YLPAIVREAIKRGLR-TLILAPTRV----VAAEMEEALR---GLPIRYQTPAIRAEHTGR 77
Query: 645 TKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKER 699
+ M +++ + Y++I++DE H + G + ++ E
Sbjct: 78 EIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEMGEA 132
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 59.1 bits (142), Expect = 5e-11
Identities = 10/109 (9%), Positives = 23/109 (21%), Gaps = 13/109 (11%)
Query: 587 QYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDVTK 646
G+ + + P + +S+ G
Sbjct: 27 AAYAAQGYK-----VLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTITTGS------- 74
Query: 647 IKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILK 695
Y +I+ DE H + + +G + +
Sbjct: 75 -PITYSTYGKFLADGGCSGGAYDIIICDECHSTDATSILGIGTVLDQAE 122
Score = 31.0 bits (69), Expect = 0.29
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 9 NDDHDPSVEKYSVIMLDKVHERTIFTDILMECSRK 43
D S Y +I+ D+ H + + +
Sbjct: 85 LADGGCSGGAYDIIICDECHSTDATSILGIGTVLD 119
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 38.1 bits (87), Expect = 0.001
Identities = 11/70 (15%), Positives = 20/70 (28%)
Query: 632 YTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLK 691
+ + I M L M+ + + VI++DE H + G
Sbjct: 63 FHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAA 122
Query: 692 KILKDKERDF 701
+ E
Sbjct: 123 HRARANESAT 132
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 36.8 bits (85), Expect = 0.007
Identities = 13/70 (18%), Positives = 18/70 (25%), Gaps = 21/70 (30%)
Query: 477 KIVIATNIAETS---ITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGR 533
VI N T ++ + +P S QR GR
Sbjct: 98 DSVIDCNTCVTQTVDFSLDPTFTIETTT------------------LPQDAVSRTQRRGR 139
Query: 534 AGRVRSGHVY 543
GR + G
Sbjct: 140 TGRGKPGIYR 149
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 36.4 bits (83), Expect = 0.010
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 18/89 (20%)
Query: 456 HGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTN 515
L EQ + R +++AT++ E + +P + V+ ++ P
Sbjct: 200 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVV--------FYEP----- 246
Query: 516 SLVVVPISKASAVQRAGRAGRVRSGHVYR 544
S ++QR GR GR G V
Sbjct: 247 -----VPSAIRSIQRRGRTGRHMPGRVII 270
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 31.4 bits (70), Expect = 0.32
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 11/97 (11%)
Query: 440 QYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVID 499
E ++ H L N ++ V R K+V+AT + +P +
Sbjct: 85 MSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVI-- 142
Query: 500 PGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGR 536
F+ + I + Q AGRAGR
Sbjct: 143 --VRSLYRFDGYS-------KRIKVSEYKQMAGRAGR 170
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 30.3 bits (67), Expect = 0.67
Identities = 10/86 (11%), Positives = 25/86 (29%), Gaps = 18/86 (20%)
Query: 455 MHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLT 514
+ E+ ++ + ++++ + + I +P + +
Sbjct: 118 ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGV--------IMSG---- 165
Query: 515 NSLVVVPISKASAVQRAGRAGRVRSG 540
S +QR GR R G
Sbjct: 166 ------SGSAREYIQRLGRILRPSKG 185
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 29.7 bits (66), Expect = 0.77
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 521 PISKASAVQRAGRAGRVRSG 540
P S QR GR GR + G
Sbjct: 109 PQDAVSRTQRRGRTGRGKPG 128
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 29.2 bits (64), Expect = 2.1
Identities = 34/263 (12%), Positives = 71/263 (26%), Gaps = 25/263 (9%)
Query: 502 FVKARWFNPNTLTNSLVVVPISKA----SAVQRAGRAGRVRSGHVYRKNF--MYNRLFIH 555
++K NP S+ K S + A + G ++ G V +
Sbjct: 27 WLKLEGNNP---AGSV------KDRAALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAM 77
Query: 556 FCVSRNIPT-IPNDPKDVKCDVMFHKVFFSFFQYLLEAGWCYDTKLIGITEPRRISVTSL 614
+ + + + + + + + + + + R L
Sbjct: 78 IAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGKLL 137
Query: 615 ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLD 674
+ + T G I T G + K I+
Sbjct: 138 DQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGL 197
Query: 675 EVHERTIF-------TDILMGLLKKILKDKERDFECSDEIASILSLLQVQDIFIKPSSGA 727
+ E + T+ L G+ L D+ D D ++ L + IF SSG
Sbjct: 198 QPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGG 257
Query: 728 LSLKARVLRRNFEVEQGDLLTLL 750
A + + ++ ++
Sbjct: 258 AVAGALRVAK--ANPDAVVVAII 278
>d1eu1a1 b.52.2.2 (A:626-780) Dimethylsulfoxide reductase (DMSO
reductase) {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 155
Score = 28.1 bits (62), Expect = 2.6
Identities = 9/73 (12%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 459 LPNNEQIKVFRPTPRAMRKIVIATNIAETSITIP--GIVYVIDPGFVKA--RWFNPNTLT 514
+ + + ++VF + + ++ + +I I G +DP ++ + N L+
Sbjct: 56 IADGDVLRVFNDRGQILVGAKVSDAVMPGAIQIYEGGWYDPLDPSEEGTLDKYGDVNVLS 115
Query: 515 NSLVVVPISKASA 527
+ +++ +
Sbjct: 116 LDVGTSKLAQGNC 128
>d2id4a1 b.18.1.20 (A:461-601) Kexin, C-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 141
Score = 27.7 bits (61), Expect = 3.3
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 385 HLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQ 444
++ + +Y P + Q T + + + + ++IEH+ +
Sbjct: 1 NVNAQTWFYL--PTLYVSQSTNSTEETLESVITISEKSLQDANFKRIEHVTVTVDIDTEI 58
Query: 445 REDLKL-LILPM 455
R + LI P
Sbjct: 59 RGTTTVDLISPA 70
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 27.9 bits (61), Expect = 5.8
Identities = 27/226 (11%), Positives = 53/226 (23%), Gaps = 19/226 (8%)
Query: 539 SGHVYRKNFMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLEAGWCYDT 598
SG+ + + ++ + + + V + + A +
Sbjct: 73 SGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEE 132
Query: 599 KLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMRE 658
L + TT G I D T G +
Sbjct: 133 ILAKTPNGYMLQQFENPANPKIHYETT-----GPEIWKGTGGKIDGFVSGIGTGGTITGA 187
Query: 659 MMTDPLLRKYSVIMLDEVHE--------------RTIFTDILMGLLKKILKDKERDFECS 704
+ E E + I + +L L D+
Sbjct: 188 GKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSD 247
Query: 705 DEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTLL 750
+ I L + + + SSGA + A L + E + +
Sbjct: 248 ESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIF 293
>d1o5ha_ a.191.1.1 (A:) Hypothetical protein TM1560 {Thermotoga
maritima [TaxId: 2336]}
Length = 200
Score = 27.2 bits (60), Expect = 6.7
Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 293 LVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLKRTQLK 352
L + ++ K VEP + + + D+ +DM+AF + +K K + +
Sbjct: 37 LAEMVANFTRKKKGYEDVEPEMERIVEAMEEARLKLFDLAKKDMEAFEKVMKAYKSS--E 94
Query: 353 LIISSATVDAEEI 365
+ +A +A +
Sbjct: 95 GELQNALKEAASV 107
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.404
Gapped
Lambda K H
0.267 0.0455 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,187,184
Number of extensions: 154089
Number of successful extensions: 388
Number of sequences better than 10.0: 1
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 20
Length of query: 858
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 765
Effective length of database: 1,130,706
Effective search space: 864990090
Effective search space used: 864990090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.4 bits)