BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2472
(571 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VSS2|SRP68_DROME Signal recognition particle 68 kDa protein OS=Drosophila
melanogaster GN=Srp68 PE=2 SV=1
Length = 604
Score = 602 bits (1553), Expect = e-171, Method: Compositional matrix adjust.
Identities = 319/578 (55%), Positives = 411/578 (71%), Gaps = 22/578 (3%)
Query: 7 IAENEDNAVKVQPK-ET-PAAKPKVVYTIEILKIIKDAQQQHGLRHGDYQRYRGYCTRRI 64
+ E+ N VQ K ET P A+P ++T+EIL +IKDAQQQHGLRHGD+QRYRGYC+RRI
Sbjct: 3 VQEDNPNTGDVQEKTETAPVAEPSKIFTVEILHMIKDAQQQHGLRHGDFQRYRGYCSRRI 62
Query: 65 RRLRKTLHLPQGDKRHFKKREVTEQHLK----DEKFIYIPLMLAERAWGYAMQLRQEANT 120
RRLRK L PQGDKRHFK+R+VT L DE+FI+IPL+ AERAW YAMQL+QE+NT
Sbjct: 63 RRLRKALKYPQGDKRHFKRRDVTIGQLTGKKADERFIHIPLICAERAWAYAMQLKQESNT 122
Query: 121 EPRKKFHLVSRLRKAASYAVQLQTLCEAEVCDARTKLEAQAYVSWIVGVLHFELKLWKSA 180
EPRK+FHLV++LR+A YA+QLQ LC E DARTKLE +AYV+W+ G LHFEL+LWK+A
Sbjct: 123 EPRKRFHLVNKLRRACFYALQLQELCNTEAFDARTKLECEAYVAWMHGTLHFELQLWKTA 182
Query: 181 MKNLKEAQVVYEKLMSALNEEDALLYKQKVEELTPSLRYCAYNI-GDQAG--IEDLMQLR 237
++LK AQVVYE L AL E++ LY+ KV E TP+LRYCAYNI G +G I+++++LR
Sbjct: 183 GEHLKRAQVVYENLGKALPEDEQELYRAKVNEFTPNLRYCAYNISGGASGGKIDEILELR 242
Query: 238 SQTHGDLLHSLDSLMIQSKEHSAEVLSEVSWRGRSVAVRSERVRVFLLAERSLDASLGQA 297
+Q +L +LD L+ Q+K S+E L + WRGR V VR E+VR+FLL+ + LD SL +
Sbjct: 243 AQ---GVLENLDVLVSQTKTESSEGLQTIDWRGRKVTVRPEKVRLFLLSAQELDKSLAKT 299
Query: 298 GAD--KIELLESHLMDCKDAIQVIKEEVKQDPNSKNRTQGSGLSSLQYLHSYLMYIRLER 355
KIEL+E LMDCKDAIQ +++E+KQDP ++ T G +S +QYL +YL YIR R
Sbjct: 300 TKQDAKIELIERILMDCKDAIQAVRDEIKQDPKLRSLTTGQTVSGVQYLLAYLSYIRHSR 359
Query: 356 TIQRNLLLAQQAKDNLKTAG--NGQQPSEGKKTRPQDLVRLYEIILQNLGELQQLSGMED 413
T+QRNL L +QAK N + Q +GK+ RPQDL RLYEIILQN+ E+QQ++G+ED
Sbjct: 360 TLQRNLCLVEQAKLNFYDPNLQSQQNVGDGKRVRPQDLARLYEIILQNVTEMQQINGLED 419
Query: 414 DAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASSLPSSGEL 473
DA YQ VE T+KAFRC+YIA +L +++W++ VALY RA+ YA++A SS E
Sbjct: 420 DATYQSEVENLAITFKAFRCYYIALTLIDIKKWKEAVALYERASNYATEALKG-KSSPEF 478
Query: 474 ATLKPELATLEAAIDSNKYSALAYSVLGTEGTPDTEPGTVAKPGAKLKKVPLAERLGEYY 533
L+ EL + +AID K+SA AYSVL E E GT K ++ PL ERL Y
Sbjct: 479 -QLQEELKKVVSAIDGCKFSAHAYSVL--EDDNSEESGTTTK--SQKTTKPLYERLSLYK 533
Query: 534 EDPSLASKSPNVIKLPPDMQPIPAKPLFFDLAQNQLEF 571
ED SL +K+PNV KL PDM+PIP KP+FFDLA +E
Sbjct: 534 EDQSLHTKAPNVFKLTPDMEPIPCKPIFFDLAMTYVEL 571
>sp|Q8BMA6|SRP68_MOUSE Signal recognition particle 68 kDa protein OS=Mus musculus GN=Srp68
PE=2 SV=2
Length = 625
Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust.
Identities = 258/552 (46%), Positives = 368/552 (66%), Gaps = 23/552 (4%)
Query: 32 TIEILKIIKDAQQQHGLRHGDYQRYRGYCTRRIRRLRKTLHLPQGDKRHFKKREVTEQHL 91
++EIL+IIK++QQQHGLRHGD+QRYRGYC+RR RRLRKTL+ G++ F ++VTE+ L
Sbjct: 58 SLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKKVTEELL 117
Query: 92 KDEKFIYIPLMLAERAWGYAMQLRQEANTEPRKKFHLVSRLRKAASYAVQLQTLCEAEVC 151
D +++ + LM AERAW YAMQL+QEANTEPRK+FHL+SRLRKA +A +L+ LCE+
Sbjct: 118 TDNRYLLLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRV 177
Query: 152 DARTKLEAQAYVSWIVGVLHFELKLWKSAMKNLKEAQVVYEKLMSALNEEDALLYKQKVE 211
DA+TKLEAQAY +++ G+L FE + WKSA++ + + +YEKL SA EE A+LY Q+VE
Sbjct: 178 DAKTKLEAQAYTAYLSGMLRFEHQEWKSAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVE 237
Query: 212 ELTPSLRYCAYNIGDQAGIEDLMQLR---SQTHGDLLHSLDSLMIQSKEHSAEVLSEVSW 268
E++P++RYCAYNIGDQ+ I +LMQ+R T G L L++L+ Q++ A +SEV W
Sbjct: 238 EISPNIRYCAYNIGDQSAINELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEW 297
Query: 269 RGRSVAVRSERVRVFLLAERSLDASLGQAGAD--KIELLESHLMDCKDAIQVIKEEVKQD 326
RGR+V V+ ++VR+FLL +A++ QA ++ K L ES L +C+DA+Q ++EE+K
Sbjct: 298 RGRTVPVKIDKVRIFLLGLADNEAAIVQAESEETKERLFESMLSECRDALQAVREELK-- 355
Query: 327 PNSKNRT-----QGSGLSSLQYLHSYLMYIRLERTIQRNLLLAQQAKDNLKTAGNGQQPS 381
P+ K R + +S+LQYLHSYL YI+L I+RN +A+ L A QQP
Sbjct: 356 PDQKQRDYALDGESGKVSNLQYLHSYLTYIKLSTAIRRNENMAK----GLHRALLQQQPE 411
Query: 382 EGKK--TRPQDLVRLYEIILQNLGELQQLSGMEDDAQYQESVEVRTKTYKAFRCFYIAES 439
+ K RPQDL+RLY+IILQNL EL QL G+E+D +Q+ + ++T +KA+RCF+IA+S
Sbjct: 412 DDSKRSPRPQDLIRLYDIILQNLVELLQLPGLEEDRTFQKEISLKTLVFKAYRCFFIAQS 471
Query: 440 LAALRRWRDCVALYSRATAYASDAASSLPSSGELATLKPELATLEAAIDSNKYSALAYSV 499
+++W + + LY R YA++ +S +S P++ L + S K S A ++
Sbjct: 472 YVLVKKWSEALVLYDRVLKYANEVSSHGGASKNSLKDLPDVQELITQVRSEKCSLQAAAI 531
Query: 500 LGTEGTPDTEPGTVAKPGAKLKKVPLAERLGEYYEDPSLASKSPNVIKLPPDMQPIPAKP 559
L + T+ + K PL ER + DPSL +K N++ PP QPIP KP
Sbjct: 532 LDANDSHQTDTSSQVKDN-----TPLVERFESFCLDPSLVTKQANLVHFPPGFQPIPCKP 586
Query: 560 LFFDLAQNQLEF 571
LFFDLA N + F
Sbjct: 587 LFFDLALNHVAF 598
>sp|Q9UHB9|SRP68_HUMAN Signal recognition particle 68 kDa protein OS=Homo sapiens GN=SRP68
PE=1 SV=2
Length = 627
Score = 504 bits (1297), Expect = e-142, Method: Compositional matrix adjust.
Identities = 257/550 (46%), Positives = 366/550 (66%), Gaps = 18/550 (3%)
Query: 32 TIEILKIIKDAQQQHGLRHGDYQRYRGYCTRRIRRLRKTLHLPQGDKRHFKKREVTEQHL 91
++EIL+IIK++QQQHGLRHGD+QRYRGYC+RR RRLRKTL+ G++ F ++VTE+ L
Sbjct: 59 SLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKKVTEELL 118
Query: 92 KDEKFIYIPLMLAERAWGYAMQLRQEANTEPRKKFHLVSRLRKAASYAVQLQTLCEAEVC 151
D +++ + LM AERAW YAMQL+QEANTEPRK+FHL+SRLRKA +A +L+ LCE+
Sbjct: 119 TDNRYLLLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRV 178
Query: 152 DARTKLEAQAYVSWIVGVLHFELKLWKSAMKNLKEAQVVYEKLMSALNEEDALLYKQKVE 211
DA+TKLEAQAY +++ G+L FE + WK+A++ + + +YEKL SA EE A+LY Q+VE
Sbjct: 179 DAKTKLEAQAYTAYLSGMLRFEHQEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVE 238
Query: 212 ELTPSLRYCAYNIGDQAGIEDLMQLR---SQTHGDLLHSLDSLMIQSKEHSAEVLSEVSW 268
E++P++RYCAYNIGDQ+ I +LMQ+R T G L L++L+ Q++ A +SEV W
Sbjct: 239 EISPNIRYCAYNIGDQSAINELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEW 298
Query: 269 RGRSVAVRSERVRVFLLAERSLDASLGQAGAD--KIELLESHLMDCKDAIQVIKEEVKQD 326
RGR+V V+ ++VR+FLL +A++ QA ++ K L ES L +C+DAIQV++EE+K D
Sbjct: 299 RGRTVPVKIDKVRIFLLGLADNEAAIVQAESEETKERLFESMLSECRDAIQVVREELKPD 358
Query: 327 PNSKN---RTQGSGLSSLQYLHSYLMYIRLERTIQRNLLLAQQAKDNLKTAGNGQQPSEG 383
++ + +S+LQYLHSYL YI+L I+RN +A+ L+ A QQP +
Sbjct: 359 QKQRDYILEGEPGKVSNLQYLHSYLTYIKLSTAIKRNENMAK----GLQRALLQQQPEDD 414
Query: 384 KK--TRPQDLVRLYEIILQNLGELQQLSGMEDDAQYQESVEVRTKTYKAFRCFYIAESLA 441
K RPQDL+RLY+IILQNL EL QL G+E+D +Q+ + ++T +KA+RCF+IA+S
Sbjct: 415 SKRSPRPQDLIRLYDIILQNLVELLQLPGLEEDKAFQKEIGLKTLVFKAYRCFFIAQSYV 474
Query: 442 ALRRWRDCVALYSRATAYASDAASSLPSSGELATLKPELATLEAAIDSNKYSALAYSVLG 501
+++W + + LY R YA++ S + P++ L + S K S A ++L
Sbjct: 475 LVKKWSEALVLYDRVLKYANEVNSDAGAFKNSLKDLPDVQELITQVRSEKCSLQAAAILD 534
Query: 502 TEGTPDTEPGTVAKPGAKLKKVPLAERLGEYYEDPSLASKSPNVIKLPPDMQPIPAKPLF 561
TE + K PL ER + DPSL +K N++ PP QPIP KPLF
Sbjct: 535 ANDAHQTETSSSQVKDNK----PLVERFETFCLDPSLVTKQANLVHFPPGFQPIPCKPLF 590
Query: 562 FDLAQNQLEF 571
FDLA N + F
Sbjct: 591 FDLALNHVAF 600
>sp|Q00004|SRP68_CANFA Signal recognition particle 68 kDa protein OS=Canis familiaris
GN=SRP68 PE=1 SV=1
Length = 622
Score = 503 bits (1296), Expect = e-141, Method: Compositional matrix adjust.
Identities = 259/553 (46%), Positives = 368/553 (66%), Gaps = 26/553 (4%)
Query: 32 TIEILKIIKDAQQQHGLRHGDYQRYRGYCTRRIRRLRKTLHLPQGDKRHFKKREVTEQHL 91
++EIL+IIK++QQQHGLRHGD+QRYRGYC+RR RRLRKTL+ G++ F ++VTE L
Sbjct: 56 SLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKKVTEDLL 115
Query: 92 KDEKFIYIPLMLAERAWGYAMQLRQEANTEPRKKFHLVSRLRKAASYAVQLQTLCEAEVC 151
D +++ + LM AERAW YAMQL+QEANTEPRK+FHL+SRLRKA +A +L+ LCE+
Sbjct: 116 TDNRYLLLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRV 175
Query: 152 DARTKLEAQAYVSWIVGVLHFELKLWKSAMKNLKEAQVVYEKLMSALNEEDALLYKQKVE 211
DA+TKLEAQAY +++ G+L FE + WK+A++ + + +YEKL SA EE A+LY Q+VE
Sbjct: 176 DAKTKLEAQAYTAYLSGMLRFEHQEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVE 235
Query: 212 ELTPSLRYCAYNIGDQAGIEDLMQLR---SQTHGDLLHSLDSLMIQSKEHSAEVLSEVSW 268
E++P++RYCAYNIGDQ+ I +LMQ+R T G L L++L+ Q++ A +SEV W
Sbjct: 236 EISPNIRYCAYNIGDQSAINELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEW 295
Query: 269 RGRSVAVRSERVRVFLLAERSLDASLGQAGAD--KIELLESHLMDCKDAIQVIKEEVKQD 326
RGR+V V+ ++VR+FLL +A++ QA ++ K L ES L +C+DAIQ ++EE+K D
Sbjct: 296 RGRTVPVKIDKVRIFLLGLADNEAAIAQAESEETKERLFESMLSECRDAIQAVREELKPD 355
Query: 327 PNSKNRT---QGSGLSSLQYLHSYLMYIRLERTIQRNLLLAQQAKDNLKTAGNGQQPSEG 383
++ T + +S+LQYLHSYL YI+L I+RN +A+ L+ A Q E
Sbjct: 356 QKQRDYTLDGESGKVSNLQYLHSYLTYIKLSTAIRRNENMAK----GLQKALQQQPEDES 411
Query: 384 KKT-RPQDLVRLYEIILQNLGELQQLSGMEDDAQYQESVEVRTKTYKAFRCFYIAESLAA 442
K++ RPQDL+RLY+IILQNL EL QL G+E+D +Q+ + ++T +KA+RCF+IA+S
Sbjct: 412 KRSPRPQDLIRLYDIILQNLVELLQLPGLEEDRAFQKEIGLKTLVFKAYRCFFIAQSYVL 471
Query: 443 LRRWRDCVALYSRATAYA----SDAASSLPSSGELATLKPELATLEAAIDSNKYSALAYS 498
+++W + + LY R YA SDA + S +L P++ L + S K S A +
Sbjct: 472 VKKWSEALVLYDRVLKYANEVNSDAGAFRNSLKDL----PDVQELITQVRSEKCSLQAAA 527
Query: 499 VLGTEGTPDTEPGTVAKPGAKLKKVPLAERLGEYYEDPSLASKSPNVIKLPPDMQPIPAK 558
+L + E + K PL ER + DPSL +K N++ PP QPIP K
Sbjct: 528 ILDASDSHQPETSSQVKDNK-----PLVERFETFCLDPSLVTKQANLVHFPPGFQPIPCK 582
Query: 559 PLFFDLAQNQLEF 571
PLFFDLA N + F
Sbjct: 583 PLFFDLALNHVAF 595
>sp|Q20822|SRP68_CAEEL Probable signal recognition particle 68 kDa protein
OS=Caenorhabditis elegans GN=F55C5.8 PE=3 SV=2
Length = 622
Score = 263 bits (673), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 181/565 (32%), Positives = 298/565 (52%), Gaps = 50/565 (8%)
Query: 32 TIEILKIIKDAQQQHGLRHGDYQRYRGYCTRRIRRLRKTLHLPQGDKRHFKKRE------ 85
T+ IL+++KDAQQQHGLRHGDY RYR YC ++ R+RK L K++
Sbjct: 19 TVHILQVVKDAQQQHGLRHGDYARYRKYCAAKLERMRKALKFTNSHNCQKKRKAKFVKKW 78
Query: 86 VTEQHLKDEKFIYIPLMLAERAWGYAM--QLRQEANTE-PRKKFHLVSRLRKAASYAVQL 142
++ + +++ +F+ + +ER + AM ++ E N E RKKF +++ LRKA +A L
Sbjct: 79 LSVESVQNVQFLNFGIFESERRYAEAMIDKITLEDNPEKSRKKFSMINSLRKAVLHATNL 138
Query: 143 QTLC-EAEVCDARTKLEAQAYVSWIVGVLHFELKLWKSAMKNLKEAQVVYEKLMSALNEE 201
+ + E+E DA TKLEAQAY +W+ G+ FE + W+ A ++LK A+ VYEKL A N
Sbjct: 139 EKIVQESERFDAPTKLEAQAYAAWMRGMCSFESRNWQKASESLKLAKTVYEKLAEATNNT 198
Query: 202 D-ALLYKQKVEELTPSLRYCAYNIGDQAG----IEDLMQLRSQTHGDLLHSLDSLM--IQ 254
+ ++K + E+ P LR C +NI + G + +LM+LR Q S+D L+ ++
Sbjct: 199 TLSSIFKGRCREIQPQLRLCEFNIAESPGAVGTMTELMELRMQMGEGGDSSVDKLISEMR 258
Query: 255 SKEHSAEVLSEVSWRGRSVAVRSERVRVFLLAERSLDASLGQAGA--DKIELLESHLMDC 312
+ SAEV++ + W G V E+ + + + + L Q +K+ L E D
Sbjct: 259 ASATSAEVVT-IEWGGAKSTVDDEKAKQVVQEWKQTEVELAQCQTPKEKMALFEKATADT 317
Query: 313 KDAIQVIKEEVKQDPNSKNRTQGSGLSSLQYLHSYLMYIRLERTIQRNLLLAQQAKDNLK 372
+DAI I + ++ + ++ + + LQ + +YL ++++ T R L + DN K
Sbjct: 318 RDAIDRISDIIR-----RKSSENADTTVLQSIKAYLEFLKMNGTASRYLAII----DNTK 368
Query: 373 TAGNGQQPSEGKKTRPQDLVRLYEIILQNLGELQQLSGMEDDAQYQESVEVRTKTYKAFR 432
+ KK++PQDL+RLY+ +++ E+ ++ G + D ++ EV+ + Y+AFR
Sbjct: 369 SE---------KKSKPQDLLRLYDSVIEIYKEVAEIPGADHDKNLIQAFEVKVEYYRAFR 419
Query: 433 CFYIAESLAALRRWRDCVALYSRATAYASDAASSL----PSSGELATLKPELATLEAAID 488
CFY+A S +AL ++ + AL+ R + DA L SS + L L + ++
Sbjct: 420 CFYMASSYSALHKYSEAAALFDRTVSRVQDAEGKLKKLKSSSFITNETQSSLNELRSEVE 479
Query: 489 SNKYSALAYSVLGTEGTPDTEPGTVAKPGAKLKKVPLAERLGEYYEDPSLAS----KSPN 544
S K + A + G T+ +AK + K PL E + E+ + S K+
Sbjct: 480 SAKVTVRAARLASAAGDVKTD-SELAKI---IDKRPLLETVNEWRQWDVRNSLKDKKTIP 535
Query: 545 VIKLPPDMQPIPAKPLFFDLAQNQL 569
V LPP P+P KP+FFDLA L
Sbjct: 536 VASLPPAFIPMPNKPIFFDLANFHL 560
>sp|Q1ZXE8|SRP68_DICDI Signal recognition particle subunit SRP68 OS=Dictyostelium
discoideum GN=srp68 PE=3 SV=1
Length = 614
Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 151/606 (24%), Positives = 281/606 (46%), Gaps = 71/606 (11%)
Query: 15 VKVQPKETPAAKPKVVYTIEILKIIKDAQQQHGLRHGDYQRYRGYCTRRIRRLRKTLHLP 74
+ PKE PK + ++IL + +Q Q GLR DY++YR YC++RI+RLR L
Sbjct: 5 ISTSPKEDV---PKEKFHLDILNFSQTSQIQFGLRLQDYKKYRQYCSKRIQRLRSQLRKQ 61
Query: 75 QGDKRHFKKREV----TEQHLKDEKFIYIPLMLAERAWGYAMQLRQ--EANTEPRKKFHL 128
G K + K + TE+ + D +++ I L+ ERAW YAM L+ E + + R FH+
Sbjct: 62 YGKKNYVNKIVLNGGETEKQINDVRYLQISLLKTERAWSYAMDLKAQFEKDNDSRIGFHM 121
Query: 129 VSRLRKAASYAVQLQTLCEAEVCDARTKLEAQAYVSWIVGVLHFELKLWKSAMKNLKEAQ 188
R KA+ + QL LC+ V D T +EA AY SW+ L + +K A++ + ++
Sbjct: 122 NRRFGKASRNSTQLYELCKL-VADQYTIIEAHAYSSWMASSLSLTKQDFKKALEEINISK 180
Query: 189 VVYEKLMSALNEEDALLYKQKVEELTPSLRYCAYNIGDQAGIEDLMQLRSQTHGDLLHSL 248
+YEKL + LY++++EE P +R+C YN+ ++ + ++ T + SL
Sbjct: 181 TIYEKLSEQGDHSQKELYQKRIEETEPIIRFCLYNLKNEKNTSN--KVSQNTLTIIEQSL 238
Query: 249 DSLMIQSKEH--------SAEVLSEVSWRGRSVAVR---SERVRVFLLAE--------RS 289
+ L Q + + + + W+ +S+ V E++++F + ++
Sbjct: 239 EELKNQENKKKSSTSSTTTTTATTTIEWKSKSIKVDEKLDEKLKIFNEFKKENENKLPKN 298
Query: 290 LDASLGQAGA-----DKIELLESHLMDCKDAIQVIKEEVKQ--DPNSKNRTQGSGL--SS 340
++AS+ + + L +L++C+ ++K ++ N KN++ S + S
Sbjct: 299 INASIDTTSNISPIFNIYDKLVYNLINCE---TIVKNDLSTLVRVNLKNKSVKSEIEEQS 355
Query: 341 LQYLHSYLMYIRLERTIQRNLLLAQQAKDNLKTAGNGQQPSEG------KKTRPQDLVRL 394
+ L +Y+MY +++ +RN +L ++ +G++ E KK DLVRL
Sbjct: 356 TRILLAYIMYHKMKYLYERNSILITM----MQRVLDGEKVDESAIKKKVKKVTWNDLVRL 411
Query: 395 YEIILQNLGELQQLSGMEDDAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYS 454
++ + + + + + + + K+ R +YIA LA ++ + +A+
Sbjct: 412 STHQVKVYTIMSESRDTDSNKEIARDQDAQLILLKSIRLYYIAVCLAKSLKFSETMAVLD 471
Query: 455 RATAYASDAASSLPSSGELATLKPELATLEAAIDSNKYSALAYSV---------LGTEGT 505
R + + + ++ E LE+ I + A S L + +
Sbjct: 472 RVLTNIQNVRKTNTKNQQILNDTNE---LESNIKKQRSQIHANSFIQQLSENQDLKNQMS 528
Query: 506 PDTEPGTVAKPGAKLKKVPLAERLGEYYEDPSLASKSPNVIKLPPDMQPIPAKPLFFDLA 565
+ G G K L L + D S ++ +++LPP +QP+ AKP+FFDLA
Sbjct: 529 SLSIGGITTASG---KSNDLISGLDSF--DTSFLTEKK-LVQLPPQLQPVQAKPIFFDLA 582
Query: 566 QNQLEF 571
N + F
Sbjct: 583 FNSVTF 588
>sp|O74436|SRP68_SCHPO Signal recognition particle subunit srp68 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=srp68 PE=3 SV=1
Length = 597
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 134/551 (24%), Positives = 233/551 (42%), Gaps = 76/551 (13%)
Query: 35 ILKIIKDAQQQHGLRHGDYQRYRGYCTRRIRRLRKTLHLPQ-GDKRHFKKREVTEQHLKD 93
I ++ +A+ H +Y +Y + RI LRK+LH+ Q G K K V D
Sbjct: 61 IFPLLLEARSDHFYEGNEYIKY---LSHRIHGLRKSLHITQRGGK---PKSSV------D 108
Query: 94 EKFIYIPLMLAERAWGYAMQLRQEANTEPRKKFHLVSRLRKAASYAVQLQTLCEAEVC-D 152
+++ I L A+RA+ + LR ++ H + RL++A + +L + A C D
Sbjct: 109 KRYAEILLFNADRAFQQFVFLRSS------QRRHALRRLKRADQFGKELVSFTNAFDCND 162
Query: 153 ARTKLEAQAYVSWIVGVLHFELKLWKSAMKNLKEAQV---VYEKLMSALNEEDALLYKQK 209
LEA A+ +I G L++E + W+ ++ +++ V + + L E + + +
Sbjct: 163 HIFYLEAIAFAKYIEGTLNYEKRDWEGSLSAFSISRLSFLVLQNKIDTLAEHEKSVLGEL 222
Query: 210 VEELTPSLRYCAYNIG--DQAGIEDLMQLRSQTHGD----LLHSLDSLMIQ---SKEHSA 260
++ +LRY A G +Q D++ L S + ++S+DS ++Q ++ S
Sbjct: 223 QNQIDSNLRYVAQRTGLQNQTKSLDILMLSSIPKDEEVIQHVNSVDSEILQMTGDEQDSL 282
Query: 261 EVLSEVSWRGRSVAVRSERVRVFLLAERSLDASLGQAGADKIELLESHLMDCKDAIQVIK 320
+ ++ + WR + V + V + L A + S G + + LL A
Sbjct: 283 QTITVIEWRDQRVKIEHPDVVLALYAIHDVKNSPGTIDSKRDRLL---------AAWARA 333
Query: 321 EEVKQDPNSKNRTQGSGLS------SLQYLHSYLMYIRLERTIQRNLLLAQQAKDNLKTA 374
EE+ +K+ +GL +L ++YL Y + IQR+L + D+ A
Sbjct: 334 EEI-----TKSVLDNTGLEDEQKFQTLSICYTYLAYNVVLLRIQRDLAVE---NDSELVA 385
Query: 375 GNGQQPSEGKKTRPQDLVRLYEIILQNLGELQQLSGMEDDAQYQESVEVRTKTYKAFRCF 434
Q S LY+ I++N+ ++L G+ D +E + K+ RC
Sbjct: 386 SQAQLRSRQS---------LYDSIIKNIEIAKELPGIARDTGMTAQLEAQISLAKSKRCQ 436
Query: 435 YIAESLAALRRWRDCVALYSRATAYASDAASSLPSSGELATLKPELATLEAAIDSNKYSA 494
IA++ A + +A+ RA +Y L + E KP L + I K
Sbjct: 437 AIADAYQAQDKLA-SLAMCVRAASYLQQVNDILRNFEE----KPHLIAFDI-IPELKKDE 490
Query: 495 LAYSVLGTEGTPDTEPGTVAKPGAKLKKVPLAERLGEYYEDPSLASKSPNVIKLPPDMQP 554
G + +P K + L E L Y +LA P+ D++
Sbjct: 491 KELKKKILLLQSLASMGNINQPP---KNLSLVETLDSY---QTLAELEPSWNLTDADIRA 544
Query: 555 IPAKPLFFDLA 565
IPAKPLFFDLA
Sbjct: 545 IPAKPLFFDLA 555
>sp|Q6BMV4|SRP68_DEBHA Signal recognition particle subunit SRP68 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=SRP68 PE=3 SV=1
Length = 587
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 98/449 (21%), Positives = 183/449 (40%), Gaps = 69/449 (15%)
Query: 52 DYQRYRGYCTRRIRRLRKTLHLPQGDKRHFKKREVTE-----QHLKDEKFIYIPLMLAER 106
DY + R +R+ +LR L L D + +KK+E + +DEK+ + L+ AER
Sbjct: 10 DYHKQRKRLNKRLLKLRHELDLITPDTKDYKKKEKISKISSSDYDQDEKYGLLLLLTAER 69
Query: 107 AWGYAMQLRQ--EANTEPRKKFH--LVSRLRKAASYAVQLQTLCEAEVCDARTKLEAQAY 162
Y+ +++ E + + + ++SR++K+ S + +L + E D ++E Y
Sbjct: 70 DSLYSSEIKSLLEISNDNASSYRNLMISRIKKSLSSSKKLLEITVNE-KDEYKRIEYYTY 128
Query: 163 VSWIVGVLHFELKLWKSAMKNLKEAQVVYEKLMSALN---------EEDALLYKQKVEEL 213
+ I G L K W A+ A+ + L S + EE K + E+
Sbjct: 129 AALIQGNLSVNKKQWSKALNAFSIAKCALDFLYSQEDSKMDIEEEQEESTQFKKTLISEI 188
Query: 214 T-----PSLRYCAYNIGDQA--GIEDLMQLRSQTHGD-----------LLHSLDSLMIQS 255
T PSL A + D A DL + Q D ++ +D +
Sbjct: 189 TETLVDPSLA-LAISQDDTAYSTTTDLKTVSRQHCRDNKLSYLQPVIEIIARIDPEAVSE 247
Query: 256 KEHSAEVLSEVSWRGRSVAVRSERV--RVFLLAERSLDASLGQAGADKI--------ELL 305
S E++ V WR + ++ + ++ L + A++ ELL
Sbjct: 248 VSSSTELIKSVQWRDHEATLYNDELAYKIMKLTNDNETNWKNFNDANQFDVLLSGWSELL 307
Query: 306 ESHLMDCKDAIQVIKEEVKQDPNSKNRTQGSGLSSLQYLHSYLMYIRLERTIQRNLLLAQ 365
E H D + +D + + Q + L Y++ L++ RL +R+LL+
Sbjct: 308 EIHTNDM---------DKNKDEDDLEKVQDRAIV-LTYINFNLLFTRL----KRDLLIID 353
Query: 366 QAKDNLKTAGNGQQPSEGKKTR-PQDLVRLYEIILQNLGELQQLSGMEDDAQYQESVEVR 424
Q + G KK +D++RLY I+ E++ L G+ +D ES++
Sbjct: 354 QL------SSQGDNVFALKKLEFNKDIIRLYGTIITTTQEIKDLPGVYNDEDLHESLDNL 407
Query: 425 TKTYKAFRCFYIAESLAALRRWRDCVALY 453
K + A + +A S A ++ + + ++
Sbjct: 408 EKFFVAKKSAVLARSFALNNKFPEALKIF 436
>sp|P38687|SRP68_YEAST Signal recognition particle subunit SRP68 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SRP68 PE=1
SV=1
Length = 599
Score = 40.0 bits (92), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 120/558 (21%), Positives = 224/558 (40%), Gaps = 64/558 (11%)
Query: 51 GDYQRYRGYCTRRIRRLRKTLHLPQGDKRHFKKRE-----VTEQHLKDEKFIYIPLML-A 104
D+ +Y ++++ LR HL D + + + +E + K I + ++L A
Sbjct: 23 SDFAKYHAKLNKKLQHLRSRCHLVTKDTKKYSSKNKYGEINSEDYDNKTKLIGVLILLHA 82
Query: 105 ERAWGYAMQL----RQEANTEPRKKFHLVSRLRKAASYAVQLQTLCEAE---VCDARTKL 157
ER A L RQ + ++ L +RL+KA A +L + + E + A+
Sbjct: 83 ERDLALAETLKLRARQRGKLKKSEEKVLSTRLKKACKTADKLVNVTQNEQQWITRAQYLA 142
Query: 158 EAQ-AYVSWIVGVLHFELKLWKSAMKNLKEAQVVYEKL--MSALNEEDALLYKQKVEELT 214
A+ + +++ F+ K NL E L +S L EE + V +
Sbjct: 143 FAKLVHSEYLINGKRFKRKDNAKISNNLALVFAALEHLKNLSLLAEE---VVDNIVNKYQ 199
Query: 215 PSLRYCAYNIGDQAGIEDLMQLRSQTHGDLLHSLDSLM---------IQSKEHSAEVLSE 265
SL+ A N+ I + + R Q+ + L L+ I + +V +
Sbjct: 200 YSLKQYAGNLITTPEINNFIVERVQSDENKDDELVKLLLDNGFNMKKITTSTEDQKVTTN 259
Query: 266 VSWRGRSVAVRSERVRVFLLAERSLDASLGQAGADKIELLESHLMDCKDAIQVIKEEVKQ 325
++WR + + V FL S+ + ++ LE L + I ++
Sbjct: 260 INWRSFNAKIIDAEVAQFLEQGLSIHPTQITQYTQRLSKLEKALDRHEFFIANHDDQDDI 319
Query: 326 DPNSKNRTQGSGLSSLQYLHSYLMYIRLERTIQRNL-LLAQQAKDNLKTAGNGQQPSEGK 384
D +N ++ + Q + +Y+ Y L +I R L LK N PS K
Sbjct: 320 DEMVENSSENN-----QIILAYIKYNILLTSISRERDLFTHLWNQWLKL--NTSLPS--K 370
Query: 385 KTRPQDLVRLYEIILQNLGELQQLSGMEDDAQYQESVEVRTKTYKAFRCFYIAESLAALR 444
T+ +++ R+ + + + L ++ +L G+ D + +++ K Y F+ F L+ L
Sbjct: 371 LTKYKEMERIVKNLTKYLSDIMELPGVYSDDELLSQLDL-CKLY--FQLFLNTGCLSVLY 427
Query: 445 ----RWRDCVALYSRATAYASDAASSLPSSGELATLKP-------ELATLEAAIDSNKYS 493
R+ + +ALY A + S + S E+ L P + +L+ I++ S
Sbjct: 428 QSKGRYMEALALYVDAYRRLENKLSEIESLDEI--LLPANLLSLNSVRSLQKRIENGGNS 485
Query: 494 ALAYSVLGTEGTPDTEPGTVAKPGAKLKKVPLAERLGEYYEDPSLASKSPNVIKLPPDMQ 553
+ + E G++ K + + E+L P+ + N+ L P M
Sbjct: 486 VITLA----EYEKRNHGGSLGKYD-----LTVIEKLDSKKILPT-DIQLKNLFPLKPKML 535
Query: 554 PIPAKPLFFDLAQNQLEF 571
PIP+KP FDLA N + +
Sbjct: 536 PIPSKPTLFDLAFNYITY 553
>sp|Q9F724|SYE_CHLTE Glutamate--tRNA ligase OS=Chlorobium tepidum (strain ATCC 49652 /
DSM 12025 / TLS) GN=gltX PE=3 SV=2
Length = 503
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 10 NEDNAVKV----QPKETPAAKPKVVYTIEILKIIKDAQQQHGLRHGDY---QR---YRGY 59
N D +++ Q ++ A+ K++ T+E II D HG +G Y QR YR Y
Sbjct: 37 NGDFVIRIEDTDQSRKVEDAEKKLISTLEWAGIIADESPMHGGNYGPYVQSQRLSIYRDY 96
Query: 60 CTR 62
CTR
Sbjct: 97 CTR 99
>sp|Q5LLL4|YBEY_RUEPO Endoribonuclease YbeY OS=Ruegeria pomeroyi (strain ATCC 700808 /
DSM 15171 / DSS-3) GN=ybeY PE=3 SV=1
Length = 165
Score = 34.3 bits (77), Expect = 2.9, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 285 LAERSLDASLGQAGADKIELLESHLMDCKDA-IQVIKEEVKQDPNSKN 331
LA+R++ A+L Q G D EL E L+ C DA I + E ++ P+ N
Sbjct: 18 LADRAISATLAQMGLDP-ELCEISLLGCDDARITALNAEFREKPSPTN 64
>sp|Q8NU98|PKN1_CORGL Probable serine/threonine-protein kinase PknB OS=Corynebacterium
glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /
LMG 3730 / NCIMB 10025) GN=pknB PE=3 SV=1
Length = 646
Score = 33.9 bits (76), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 17/96 (17%)
Query: 283 FLLAER-SLDASLGQAGADKIELLESHLMDCKDAIQVIKEEVKQDPNSKNRTQGSGLSSL 341
F++A+R LDA +G G ++ L+ + A+++++ ++ +DPN + R + +S
Sbjct: 3 FVIADRYELDAVIGSGGMSEVFAATDTLIGREVAVKMLRIDLAKDPNFRERFRREAQNSG 62
Query: 342 QYLHSYLM----------------YIRLERTIQRNL 361
+ HS ++ YI +ER RNL
Sbjct: 63 RLSHSSIVAVFDTGEVDKDGTSVPYIVMERVQGRNL 98
>sp|Q5WAV8|MURB_BACSK UDP-N-acetylenolpyruvoylglucosamine reductase OS=Bacillus clausii
(strain KSM-K16) GN=murB PE=3 SV=1
Length = 311
Score = 33.1 bits (74), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 451 ALYSRATAYASDAASSLPS------SGELATLKPELATLEAAIDSNKYSALAYSVLGTEG 504
A Y A AY A L S GE TL E E D K A + EG
Sbjct: 136 AFYMNAGAYGGQIADVLESVLVLTEQGEFKTLSKE----EFDFDYRKSVFSAKRYIALEG 191
Query: 505 TPDTEPGTVAKPGAKLKKVPLAERLGEYYEDPSLASKSPNVIKLPPDM 552
T + G +A+ AK+ ++ +A + E PS S V K PP M
Sbjct: 192 TFRLQKGDMAQIQAKMDELTIARETKQPLEYPSCGS----VFKRPPGM 235
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 32.7 bits (73), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 15/153 (9%)
Query: 64 IRRLRKTLHLPQGDKRHFKKREVTEQHLKDEKFIYIPLMLAERA---WGYAMQ-LRQEAN 119
++R+ ++ +LP H E+ ++ +E F + LML +R + Q +R +
Sbjct: 522 LQRMLRSSYLPVATTFHSVLAELAKRKFANESFCLVTLMLEKRIRQNIDLSTQVVRLLFS 581
Query: 120 TEPRKKFHLVSRLRKAASYAVQLQTLCEAEVCDARTKLEAQAYVSWIVGVLHFELKLWKS 179
+ ++K L+ RL Y V+++ L +C+ R L+A V + L KS
Sbjct: 582 SAQKEKAFLIVRLLYDNGYLVKMEELL-GYLCENRKLLDAHTLVLFC---------LEKS 631
Query: 180 AMKNLKEAQVVYEKLMSALNEEDAL-LYKQKVE 211
M ++ V E L +A LY + VE
Sbjct: 632 QMVDIDTCNTVIEGLCKHKRHSEAFSLYNELVE 664
>sp|Q9UTE1|YFMD_SCHPO Probable 6-phosphofructo-2-kinase C222.13c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC222.13c PE=3 SV=1
Length = 592
Score = 32.7 bits (73), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 15/112 (13%)
Query: 118 ANTEPRKKFHLVSRLRKAASYAVQ-LQTLCEAEVC---DARTKLEAQAYVSWIVGVLHFE 173
N+ ++ HL R+ K A + L++LC ++ + + K++ Y +
Sbjct: 237 TNSTHERRKHLYDRISKEADIGIMFLESLCTDDILFEENIKLKIKGPDYEGYDT------ 290
Query: 174 LKLWKSAMKNLKEAQVVYEKLMSALNEEDALL-YKQKVEELTPSLRYCAYNI 224
+SA+K+L+E +Y+K L+E D L + Q V+ + ++ +NI
Sbjct: 291 ----ESALKDLRERVDLYKKYYEPLDERDEQLPFLQYVKVINVGIKVVTHNI 338
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 200,303,494
Number of Sequences: 539616
Number of extensions: 8112180
Number of successful extensions: 25034
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 24970
Number of HSP's gapped (non-prelim): 66
length of query: 571
length of database: 191,569,459
effective HSP length: 123
effective length of query: 448
effective length of database: 125,196,691
effective search space: 56088117568
effective search space used: 56088117568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)