Query psy2472
Match_columns 571
No_of_seqs 128 out of 229
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 17:09:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2472.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2472hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2460|consensus 100.0 1E-118 2E-123 934.6 46.2 526 31-571 18-558 (593)
2 cd09034 BRO1_Alix_like Protein 91.9 1.3 2.8E-05 46.9 10.9 98 389-490 210-309 (345)
3 cd09242 BRO1_ScBro1_like Prote 91.8 1.7 3.6E-05 46.4 11.7 100 389-490 203-309 (348)
4 PF03097 BRO1: BRO1-like domai 91.2 1.5 3.2E-05 47.0 10.6 99 390-491 201-300 (377)
5 cd09247 BRO1_Alix_like_2 Prote 90.9 2.6 5.6E-05 44.9 11.9 76 389-466 213-289 (346)
6 cd09241 BRO1_ScRim20-like Prot 90.8 2.5 5.4E-05 45.2 11.8 95 389-490 201-295 (355)
7 cd09246 BRO1_Alix_like_1 Prote 90.5 2.9 6.2E-05 44.7 11.9 98 389-490 208-306 (353)
8 cd09239 BRO1_HD-PTP_like Prote 88.5 4 8.7E-05 43.8 11.2 99 389-489 208-311 (361)
9 PF13176 TPR_7: Tetratricopept 86.5 1.6 3.5E-05 30.2 4.6 28 434-461 3-30 (36)
10 cd09240 BRO1_Alix Protein-inte 84.7 10 0.00022 40.4 11.7 77 389-467 216-292 (346)
11 PF07719 TPR_2: Tetratricopept 84.2 2 4.4E-05 28.5 4.1 27 433-459 4-30 (34)
12 PF13374 TPR_10: Tetratricopep 80.1 4.2 9E-05 28.1 4.6 31 434-464 6-36 (42)
13 PF00515 TPR_1: Tetratricopept 79.3 4.6 0.0001 27.0 4.5 27 433-459 4-30 (34)
14 cd09243 BRO1_Brox_like Protein 75.0 15 0.00032 39.4 9.0 73 389-465 211-283 (353)
15 cd09244 BRO1_Rhophilin Protein 74.0 55 0.0012 35.1 13.0 74 390-465 206-279 (350)
16 PF00515 TPR_1: Tetratricopept 73.2 6.7 0.00015 26.1 4.0 30 161-190 1-30 (34)
17 PF07719 TPR_2: Tetratricopept 73.2 6.8 0.00015 25.8 4.0 29 162-190 2-30 (34)
18 PF13181 TPR_8: Tetratricopept 72.0 8.3 0.00018 25.6 4.2 28 433-460 4-31 (34)
19 cd09245 BRO1_UmRIM23-like Prot 70.5 23 0.00049 38.8 9.3 53 413-465 279-331 (413)
20 PF13174 TPR_6: Tetratricopept 67.2 7.9 0.00017 25.2 3.2 26 434-459 4-29 (33)
21 PF13424 TPR_12: Tetratricopep 67.1 11 0.00024 30.1 4.7 30 432-461 6-36 (78)
22 PF13424 TPR_12: Tetratricopep 66.9 42 0.00091 26.6 8.2 63 127-193 16-78 (78)
23 PF13428 TPR_14: Tetratricopep 63.1 13 0.00028 26.6 4.0 26 434-459 5-30 (44)
24 PF04212 MIT: MIT (microtubule 59.1 77 0.0017 25.1 8.2 39 429-467 4-42 (69)
25 PF13374 TPR_10: Tetratricopep 54.2 23 0.00049 24.2 3.9 33 163-195 4-36 (42)
26 cd02682 MIT_AAA_Arch MIT: doma 54.1 1E+02 0.0022 25.5 8.0 38 430-467 6-43 (75)
27 PF13174 TPR_6: Tetratricopept 54.0 23 0.00049 22.9 3.7 27 162-188 1-27 (33)
28 PF13181 TPR_8: Tetratricopept 54.0 20 0.00044 23.6 3.4 27 164-190 4-30 (34)
29 KOG2220|consensus 53.8 1E+02 0.0022 36.3 11.1 76 389-467 205-280 (714)
30 PF13414 TPR_11: TPR repeat; P 52.1 19 0.00042 27.8 3.6 30 161-190 3-32 (69)
31 PF13432 TPR_16: Tetratricopep 50.0 26 0.00056 26.8 4.0 26 434-459 35-60 (65)
32 KOG2376|consensus 49.1 1.4E+02 0.0031 34.0 10.7 35 432-466 177-211 (652)
33 PF07721 TPR_4: Tetratricopept 47.7 23 0.00051 22.5 2.8 22 433-454 4-25 (26)
34 PF13414 TPR_11: TPR repeat; P 44.7 79 0.0017 24.2 6.0 53 127-190 14-67 (69)
35 cd02679 MIT_spastin MIT: domai 43.2 2E+02 0.0042 24.0 8.5 66 426-494 4-72 (79)
36 PF12895 Apc3: Anaphase-promot 43.0 26 0.00056 28.5 3.1 22 166-187 63-84 (84)
37 cd02683 MIT_1 MIT: domain cont 39.5 2E+02 0.0044 23.6 7.8 33 435-467 11-43 (77)
38 smart00745 MIT Microtubule Int 39.4 2E+02 0.0044 23.1 8.8 38 429-466 7-44 (77)
39 KOG1840|consensus 38.3 6.4E+02 0.014 28.6 14.0 159 266-462 219-399 (508)
40 COG4910 PduE Propanediol dehyd 38.2 90 0.0019 28.6 5.8 49 396-446 114-166 (170)
41 PF10516 SHNi-TPR: SHNi-TPR; 37.6 66 0.0014 22.9 4.0 33 163-195 3-35 (38)
42 PF13176 TPR_7: Tetratricopept 37.5 63 0.0014 22.0 3.9 26 165-190 3-28 (36)
43 smart00028 TPR Tetratricopepti 37.3 49 0.0011 19.7 3.2 25 434-458 5-29 (34)
44 cd02678 MIT_VPS4 MIT: domain c 35.7 2.4E+02 0.0051 22.8 8.0 37 431-467 7-43 (75)
45 PF11817 Foie-gras_1: Foie gra 34.0 68 0.0015 32.3 5.1 60 159-228 176-235 (247)
46 PF12895 Apc3: Anaphase-promot 33.7 53 0.0012 26.6 3.6 22 435-456 63-84 (84)
47 cd02684 MIT_2 MIT: domain cont 33.6 2.5E+02 0.0054 23.0 7.4 37 431-467 7-43 (75)
48 PF08097 Toxin_26: Conotoxin T 33.0 13 0.00028 18.9 -0.2 7 215-221 4-10 (11)
49 PF13371 TPR_9: Tetratricopept 29.3 76 0.0016 24.6 3.7 27 435-461 34-60 (73)
50 cd00189 TPR Tetratricopeptide 28.8 1.6E+02 0.0036 22.0 5.6 50 129-189 13-62 (100)
51 cd02656 MIT MIT: domain contai 28.6 3.1E+02 0.0066 22.0 8.1 32 435-466 11-42 (75)
52 PF14853 Fis1_TPR_C: Fis1 C-te 28.5 1.1E+02 0.0023 23.5 4.1 44 433-490 4-47 (53)
53 cd02681 MIT_calpain7_1 MIT: do 27.9 1.4E+02 0.0031 24.6 5.1 36 430-465 6-41 (76)
54 PF13371 TPR_9: Tetratricopept 27.5 1.3E+02 0.0028 23.2 4.8 49 129-188 8-56 (73)
55 PF13432 TPR_16: Tetratricopep 27.5 68 0.0015 24.4 3.0 25 434-458 1-25 (65)
56 PF08969 USP8_dimer: USP8 dime 26.3 3E+02 0.0064 24.2 7.3 62 400-467 10-74 (115)
57 cd02682 MIT_AAA_Arch MIT: doma 25.3 3.9E+02 0.0084 22.1 7.1 48 166-213 10-59 (75)
58 PF00633 HHH: Helix-hairpin-he 24.6 42 0.0009 22.6 1.1 12 401-412 9-20 (30)
59 PF12854 PPR_1: PPR repeat 24.0 1.2E+02 0.0026 20.5 3.4 21 435-455 12-32 (34)
60 PF12688 TPR_5: Tetratrico pep 23.9 98 0.0021 27.8 3.7 26 433-458 4-29 (120)
61 COG2956 Predicted N-acetylgluc 21.7 6.8E+02 0.015 26.8 9.7 52 163-229 216-267 (389)
62 PF12862 Apc5: Anaphase-promot 20.8 4.8E+02 0.01 21.8 7.3 33 433-465 44-76 (94)
63 PF14559 TPR_19: Tetratricopep 20.7 72 0.0016 24.3 2.0 25 434-458 29-53 (68)
64 COG1516 FliS Flagellin-specifi 20.6 3.9E+02 0.0085 24.6 6.9 47 163-209 33-80 (132)
65 PF10579 Rapsyn_N: Rapsyn N-te 20.1 1.7E+02 0.0036 24.6 4.0 30 431-460 43-73 (80)
No 1
>KOG2460|consensus
Probab=100.00 E-value=1.1e-118 Score=934.58 Aligned_cols=526 Identities=45% Similarity=0.690 Sum_probs=475.2
Q ss_pred cchhHHHHHHHHHHhcCcCchhhHHHHhHHHHHHHHHhhhcCCCCCCCCCcccccCCccccC--CccchHHHHHHHHHHH
Q psy2472 31 YTIEILKIIKDAQQQHGLRHGDYQRYRGYCTRRIRRLRKTLHLPQGDKRHFKKREVTEQHLK--DEKFIYIPLMLAERAW 108 (571)
Q Consensus 31 ~~l~vl~~i~~~q~qhGLrh~DY~RYr~ycsrRL~rLRk~L~~~~g~~kky~~k~it~e~~~--d~r~l~llLl~AERaW 108 (571)
-++.+|++++++|+|||||||||+|||+||++|++|+||+++|++|+.+||..+.||-...+ |.+||.+|++++||+|
T Consensus 18 ~t~~iL~~~kd~qqqHgLrhGd~qryR~yC~~~l~r~rKal~f~~gn~~k~~s~~v~~~~~~~~~~q~l~~~~~e~era~ 97 (593)
T KOG2460|consen 18 RTLEILQTIKDAQQQHGLRHGDFQRYRGYCSRRLRRLRKALKFKNGNYGKFKSKDVTNKLKTLHDIQFLILPLAEAERAY 97 (593)
T ss_pred chHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhHhhhhhhhhhhhhhhhHHHHH
Confidence 38999999999999999999999999999999999999999999999999999988876555 9999999999999999
Q ss_pred HHHHH-HHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhh-hcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy2472 109 GYAMQ-LRQEANTEPRKKFHLVSRLRKAASYAVQLQTLCEA-EVCDARTKLEAQAYVSWIVGVLHFELKLWKSAMKNLKE 186 (571)
Q Consensus 109 AyAme-LK~~~~~~~r~R~h~~~RLkKA~~~A~~L~~l~~~-~~~d~~t~lEa~AY~~~i~G~l~~E~~~W~~Al~~~~~ 186 (571)
||||+ +|++.|++||+|+|+++||||||+||++|+++|++ ++.|++|+|||+||++||.|.+.||+++|+.|.+.|+.
T Consensus 98 Aeam~~~~Qe~n~e~rkrfhll~rLrkA~~~A~eL~~~~q~~e~~Da~tkLEA~Ayaa~m~G~lnfE~r~Wk~a~ea~~~ 177 (593)
T KOG2460|consen 98 AEAMQLAKQEGNTESRKRFHLLNRLRKAVKHADELVNLTQNEERFDARTKLEAQAYAAYMEGMLNFERRKWKDAAEAFNN 177 (593)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHhhhhhhHHhHHhHHHHHHH
Confidence 99999 99999999999999999999999999999999997 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc-HHHHHHHHHHHHhhchhhhHhhhhcCCcc---chhHHHHHhhhhhhh---hHhhhhHhhh-hhhhh
Q psy2472 187 AQVVYEKLMSALN-EEDALLYKQKVEELTPSLRYCAYNIGDQA---GIEDLMQLRSQTHGD---LLHSLDSLMI-QSKEH 258 (571)
Q Consensus 187 ar~iy~~L~~~~~-~~~~~l~~~~~~eidp~lRycay~l~~~~---~~~~l~~~r~~~~~~---l~~~~d~~~~-~~~~~ 258 (571)
|+.+|+.|+.+.+ +.++.+|+.++++|+|+|||||||++.+. .+++||++|.+.|++ +.+++|.++. +++++
T Consensus 178 ~klvye~L~~a~~~e~~~~v~~~~vneiqpnLRycA~Ni~~~~~~~~i~Elmq~r~~~dee~~~~~~svd~lis~~t~te 257 (593)
T KOG2460|consen 178 AKLVYEKLAHAKNLELEESVYDNRVNEIQPNLRYCAYNIIGPESNGFIDELMQSREQKDEELVKLLESVDFLISIQTSTE 257 (593)
T ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHhcChhHHHHhhhccCccccchHHHHHHhhccCCchhhhhhhccchhhhcchhhh
Confidence 9999999999988 67899999999999999999999996443 689999999887665 6678888777 55556
Q ss_pred hhccceeEEEccccccccCHHHHHHHHHHHHHHHHhhhhc--hhhHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy2472 259 SAEVLSEVSWRGRSVAVRSERVRVFLLAERSLDASLGQAG--ADKIELLESHLMDCKDAIQVIKEEVKQDPNSKNRTQGS 336 (571)
Q Consensus 259 ~~~~~~~I~Wr~~~~~i~~~~v~~~l~~~~~~~~~l~~~~--~~~~~~yd~~l~~~~dA~~~~k~~l~~~~~~~~~~~d~ 336 (571)
+.+.+++|+|||++|+|.+++|+++|..+++.+.+|.+++ +.+++.|+++++.|.||++.++|++.-+++.++
T Consensus 258 s~~~~t~IeWRg~kvkV~~~kV~~fL~~~~d~~~~l~q~~t~~~K~~llEkala~~edaI~~v~D~~~~d~~~~~----- 332 (593)
T KOG2460|consen 258 SSATTTTIEWRGRKVKVIDEKVRQFLLQGLDIEPALAQITTYDQKLSLLEKALARCEDAIQNVRDEIKIDEKQRN----- 332 (593)
T ss_pred hhcceeEEEecCcccccccHHHHHHHHHHHhhcHHhccCCCHhHHHHHHHHHHHHHHHHHHHHhhhcccchHhhh-----
Confidence 6678999999999999999999999999999999998875 889999999999999999999999887654332
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhcCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhccCCCCchH
Q psy2472 337 GLSSLQYLHSYLMYIRLERTIQRNLLLAQQAKDNLKTAGNGQQPSEGKKTRPQDLVRLYEIILQNLGELQQLSGMEDDAQ 416 (571)
Q Consensus 337 ~~~~lq~l~~yi~y~~l~~~ieRn~~Li~~~~~~~~~~~~~~~~~~~k~~k~~eivrLyd~ilq~l~ei~eLpgv~~D~~ 416 (571)
...+.|++++|+.|+++.+||.||..++..++..|... +++..+|+ +|+|+.||||+|+||+.+|+||||+++|+.
T Consensus 333 ~t~~~q~i~aYL~Y~~l~~tisR~~~~~~n~~~~~ls~---~~~~~~k~-rpqdl~RLYd~iiknl~e~~elPG~~~D~~ 408 (593)
T KOG2460|consen 333 STLNGQIILAYLKYNKLLTTISRNEDAFTNLWNQWLSQ---QTSDPKKL-RPQDLERLYDSIIKNLSEIMELPGLESDKE 408 (593)
T ss_pred hhhcchHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHh---Cccccccc-CHHHHHHHHHHHHHHHHHHHhCCCcccchH
Confidence 34568889999999999999999999999999999875 33333344 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhccCCCCCCccchH-HHHHHHHHHHhhhHHHHH
Q psy2472 417 YQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASSLPSSGELATLK-PELATLEAAIDSNKYSAL 495 (571)
Q Consensus 417 l~~~le~~~~~~~A~rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~~~~~~~~~~~l~-~~l~~L~~~i~~~~~~~~ 495 (571)
+.++++++..||+|+||||||.+|+..+||+||+|||+||..+++++.+.+ .++ .+.+. ..+.++..++++.+++++
T Consensus 409 l~sqle~~~~~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~~l-~s~-~e~l~~~~~~eli~el~k~k~s~~ 486 (593)
T KOG2460|consen 409 LQSQLELKKLYFKAFRCFYIAVSYQAKKKYSEALALYVRAYSYLQEVNSEL-ESF-KESLLPLLLLELISELQKRKESLG 486 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hch-hhcccchHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999877 655 33333 778889999999999999
Q ss_pred HHHhhcccCCCCCCCCCcCCCCCcccCCcccccccccCCCCCCCCCCCcceeCCCCCcccCCCcchhhcccccccC
Q psy2472 496 AYSVLGTEGTPDTEPGTVAKPGAKLKKVPLAERLGEYYEDPSLASKSPNVIKLPPDMQPIPAKPLFFDLAQNQLEF 571 (571)
Q Consensus 496 A~~~le~~~~~~~~~~~~~~~~~~~~~~~LiE~Ld~~~~~~~~~~~~~nlv~~PP~~~pVp~KPlfFDlA~NyI~y 571 (571)
|.+++.+.....+..+.+. ..+++||+|+||.|..++++.++.||++++||.|+||||||+|||||+|||+|
T Consensus 487 a~~il~a~~a~~tnt~~sq----~k~~~pLvE~lds~k~~~~l~~k~~n~~~l~P~~~PIP~KPlFFDLA~~yl~~ 558 (593)
T KOG2460|consen 487 AAVILLAEYAKRTNTGGSQ----GKDNLPLVETLDSYKLDLSLDTKLPNLFPLPPDFLPIPCKPLFFDLAFNYLTY 558 (593)
T ss_pred hhhhhhhccchhcCCcccc----CCCcccHHHHHHHhcccchhhhccCccccCCcccccCCCcchHHHHHHHhhcC
Confidence 9998887654443322222 23789999999999977777778899999999999999999999999999986
No 2
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=91.85 E-value=1.3 Score=46.89 Aligned_cols=98 Identities=15% Similarity=0.200 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHHHHhhc--cCCCCchHHHHHHHHHHHHHHhHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcc
Q psy2472 389 QDLVRLYEIILQNLGELQQL--SGMEDDAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASS 466 (571)
Q Consensus 389 ~eivrLyd~ilq~l~ei~eL--pgv~~D~~l~~~le~~~~~~~A~rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~~ 466 (571)
.+...+|+...+.+...... +++ +.++..-+..+..+|+|.=++++|..+...+++.||++.+..|...++++...
T Consensus 210 ~~~~~~y~~A~~~l~~~~~~~~~~~--~~~w~~~v~~K~~~~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~~~~ 287 (345)
T cd09034 210 CEAAKYYEEALKCLSGVDLETIKNI--PKKWLLFLKWKKCIFKALAYYYHGLKLDEANKIGEAIARLQAALELLKESERL 287 (345)
T ss_pred HHHHHHHHHHHHHHhcCCchhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888877765432 333 57899999999999999999999999999999999999999999999988764
Q ss_pred CCCCCCccchHHHHHHHHHHHhhh
Q psy2472 467 LPSSGELATLKPELATLEAAIDSN 490 (571)
Q Consensus 467 ~~~~~~~~~l~~~l~~L~~~i~~~ 490 (571)
. ..+ +..+...++.+.+.|+..
T Consensus 288 ~-~~~-~~~~~~~~~~l~~~i~~~ 309 (345)
T cd09034 288 C-KSF-LLDVWGNLKKLKEKIEKE 309 (345)
T ss_pred H-Hhc-cchHHHHHHHHHHHHHHH
Confidence 3 222 112335555566555443
No 3
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=91.81 E-value=1.7 Score=46.41 Aligned_cols=100 Identities=20% Similarity=0.355 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHHHHHHhhccCC-CCchHHHHHHHHHHHHHHhHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhccC
Q psy2472 389 QDLVRLYEIILQNLGELQQLSGM-EDDAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASSL 467 (571)
Q Consensus 389 ~eivrLyd~ilq~l~ei~eLpgv-~~D~~l~~~le~~~~~~~A~rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~~~ 467 (571)
.+...+|....+.+..... ++. .-+..+..-+..+..+|+|.=+|+.|......+||-||++-+..|...++++.+..
T Consensus 203 ~~~~~~Y~~a~~~l~~~~~-~~~~~~~~~W~~~~~~K~~~f~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~~~~ 281 (348)
T cd09242 203 SATANLYESCVEFLKEIQE-KGISYGDPKWISLVQCKAHYYKSLAAYYHALALEAAGKYGEAIAYLTQAESILKEANPQK 281 (348)
T ss_pred HHHHHHHHHHHHHHhcccc-ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777665421 121 35678999999999999999999999999999999999999999999999887633
Q ss_pred CCCCC--c----cchHHHHHHHHHHHhhh
Q psy2472 468 PSSGE--L----ATLKPELATLEAAIDSN 490 (571)
Q Consensus 468 ~~~~~--~----~~l~~~l~~L~~~i~~~ 490 (571)
..+. + ..+...++.+.+.|+..
T Consensus 282 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 309 (348)
T cd09242 282 -LSLKASAGDAAYALNDDFKGQKDTVEEK 309 (348)
T ss_pred -hcCCCccccchhHHHHHHHHHHHHHHHH
Confidence 1110 1 12445566666555543
No 4
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=91.19 E-value=1.5 Score=47.01 Aligned_cols=99 Identities=16% Similarity=0.262 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhccCCC
Q psy2472 390 DLVRLYEIILQNLGELQQLSGMEDDAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASSLPS 469 (571)
Q Consensus 390 eivrLyd~ilq~l~ei~eLpgv~~D~~l~~~le~~~~~~~A~rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~~~~~ 469 (571)
+...+|+.....+.....-..+ +..|..-+..+..||+|.-+|+.|..+...++|.+|++.+..|...++++.... .
T Consensus 201 ~~~~~Y~~a~~~l~~~~~~~~~--~~~w~~~~~~K~~~~~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~~~~-~ 277 (377)
T PF03097_consen 201 QASELYDEAHEALQSSPLSESI--PKDWRSYVQVKSAYYRALAHYHQALAAEEAKKYGEAIARLRRAEEALKEASKLA-K 277 (377)
T ss_dssp HHHHHHHHHHHHHTTCHHHHCS--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHC-C
T ss_pred HHHHHHHHHHHHHhcccccccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhhh-h
Confidence 3455555555554443321122 478999999999999999999999999999999999999999999999998754 2
Q ss_pred C-CCccchHHHHHHHHHHHhhhH
Q psy2472 470 S-GELATLKPELATLEAAIDSNK 491 (571)
Q Consensus 470 ~-~~~~~l~~~l~~L~~~i~~~~ 491 (571)
. .....+...++.+.+.|+...
T Consensus 278 ~~~~~~~~~~~~~~l~~~i~~~l 300 (377)
T PF03097_consen 278 KCSKSSSLQDDLKSLLDQIQEKL 300 (377)
T ss_dssp CHSCCSTTTHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHH
Confidence 2 013445577777777776554
No 5
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=90.87 E-value=2.6 Score=44.94 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHHHHHhh-ccCCCCchHHHHHHHHHHHHHHhHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcc
Q psy2472 389 QDLVRLYEIILQNLGELQQ-LSGMEDDAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASS 466 (571)
Q Consensus 389 ~eivrLyd~ilq~l~ei~e-Lpgv~~D~~l~~~le~~~~~~~A~rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~~ 466 (571)
-+...+|+.....+..... ++++ +.+|...+..+..+|+|.=|+++|......+|+-||++.++.|...+.++...
T Consensus 213 ~~~~~~y~~A~~~l~~~~~~~~~i--~~~~~~~l~~k~~~~~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~~~~ 289 (346)
T cd09247 213 YGATQFLEEAKNVLRSLATDLKDL--DPRFLRFISSCIALHEARSQLYLARRLKEAGHIGVAVGVLREALRNLKKKLPG 289 (346)
T ss_pred HHHHHHHHHHHHHHHccCcchhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcc
Confidence 4456667666666654322 2333 58899999999999999999999999999999999999999999998877653
No 6
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=90.78 E-value=2.5 Score=45.20 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhccCC
Q psy2472 389 QDLVRLYEIILQNLGELQQLSGMEDDAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASSLP 468 (571)
Q Consensus 389 ~eivrLyd~ilq~l~ei~eLpgv~~D~~l~~~le~~~~~~~A~rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~~~~ 468 (571)
.....+|+...+.+. .-+.+ +..+..-+..+..+|+|.=+|+.|......++|-|+++-+..|...+.++.+..
T Consensus 201 ~qv~~~Y~~a~~~l~---~~~~i--~~~W~~~v~~K~~~f~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~a~~~~- 274 (355)
T cd09241 201 AQVSDYYQEALKYAN---KSDLI--RSDWINHLKVKKHHFKAAAHYRMALVALEKSKYGEEVARLRVALAACKEALKEA- 274 (355)
T ss_pred HHHHHHHHHHHHHHh---cCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh-
Confidence 446677777776665 22333 588999999999999999999999999999999999999999999999888643
Q ss_pred CCCCccchHHHHHHHHHHHhhh
Q psy2472 469 SSGELATLKPELATLEAAIDSN 490 (571)
Q Consensus 469 ~~~~~~~l~~~l~~L~~~i~~~ 490 (571)
... ...+.+.++.|...|+..
T Consensus 275 ~~~-~~~~~~~~~~l~~~i~~~ 295 (355)
T cd09241 275 RYG-NKAVLEDLQGLKDIVKES 295 (355)
T ss_pred hcc-chhHHHHHHHHHHHHHHH
Confidence 222 334446666666666543
No 7
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=90.52 E-value=2.9 Score=44.75 Aligned_cols=98 Identities=18% Similarity=0.211 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhccCC
Q psy2472 389 QDLVRLYEIILQNLGELQQLSGMEDDAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASSLP 468 (571)
Q Consensus 389 ~eivrLyd~ilq~l~ei~eLpgv~~D~~l~~~le~~~~~~~A~rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~~~~ 468 (571)
.....+|+.....+..= .+.+ .-+..+..-+..+..||+|.=.|+.|......+||-|+++-+..|...+.++.+..
T Consensus 208 ~qv~~~Y~~a~~~l~~~-~~~~-~~~~~W~~~~~~K~~~f~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~k~~- 284 (353)
T cd09246 208 KQARSYYEEALEALDSP-PLKG-HFDKSWVAHVQLKAAYFRAEALYRAAKDLHEKEDIGEEIARLRAASDALAEARKQA- 284 (353)
T ss_pred HHHHHHHHHHHHHHhcc-cccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcchHHHHHHHHHHHHHHHHHHHHh-
Confidence 45667777777766530 1111 22678889999999999999999999999999999999999999999998887654
Q ss_pred CCCCcc-chHHHHHHHHHHHhhh
Q psy2472 469 SSGELA-TLKPELATLEAAIDSN 490 (571)
Q Consensus 469 ~~~~~~-~l~~~l~~L~~~i~~~ 490 (571)
... +. .+...++.+...|+..
T Consensus 285 ~~~-~~~~~~~~~~~l~~~v~~~ 306 (353)
T cd09246 285 KGV-NGDELIEAVSELEQVINEL 306 (353)
T ss_pred hcC-CcHHHHHHHHHHHHHHHHH
Confidence 222 22 3446666666666443
No 8
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=88.50 E-value=4 Score=43.80 Aligned_cols=99 Identities=15% Similarity=0.224 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHHHHHhhccC-C--CCchHHHHHHHHHHHHHHhHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Q psy2472 389 QDLVRLYEIILQNLGELQQLSG-M--EDDAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAAS 465 (571)
Q Consensus 389 ~eivrLyd~ilq~l~ei~eLpg-v--~~D~~l~~~le~~~~~~~A~rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~ 465 (571)
.....+|+.....+.+....++ | .=+.++..-+..+..||+|.=+|+.|......+||-|+++-|+.|...+.+|.+
T Consensus 208 ~q~~~~Y~~a~~~l~~~~~~~~~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~l~~a~~ 287 (361)
T cd09239 208 AQVVEYYKEALRALENWESNSKIILGKIQKEWRKLVQMKIAYYASIAHLHMGKQSEEQQKMGERVAYYQLANDKLEEAIK 287 (361)
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888877766422211 1 236789999999999999999999999999999999999999999999988876
Q ss_pred cCCCCCCcc--chHHHHHHHHHHHhh
Q psy2472 466 SLPSSGELA--TLKPELATLEAAIDS 489 (571)
Q Consensus 466 ~~~~~~~~~--~l~~~l~~L~~~i~~ 489 (571)
.. ... +. .+.+.+..+.+.|+.
T Consensus 288 ~~-~~~-~~~~~~~~~~~~l~~~i~~ 311 (361)
T cd09239 288 NA-KGQ-PDTVNLQEALSFTMDVIGG 311 (361)
T ss_pred HH-hCC-CcchhHHHHHHHHHHHHHH
Confidence 43 222 22 244556666655544
No 9
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.53 E-value=1.6 Score=30.17 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=23.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy2472 434 FYIAESLAALRRWRDCVALYSRATAYAS 461 (571)
Q Consensus 434 ~~lA~~y~~~~k~~EAlaL~~ra~~~~~ 461 (571)
..||.+|...|+|.+|+.+|.+++....
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 4799999999999999999999885544
No 10
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=84.68 E-value=10 Score=40.41 Aligned_cols=77 Identities=9% Similarity=0.047 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhccC
Q psy2472 389 QDLVRLYEIILQNLGELQQLSGMEDDAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASSL 467 (571)
Q Consensus 389 ~eivrLyd~ilq~l~ei~eLpgv~~D~~l~~~le~~~~~~~A~rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~~~ 467 (571)
.++..+|+...+.+..-. ..-.-+.++..-+..+..||.|.=.|+.|..+...+||-|+++-+..|...++++....
T Consensus 216 ~qv~~~Y~~a~~~l~~~~--~~~~~~~~W~~~~~~K~~~f~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~a~~~~ 292 (346)
T cd09240 216 AQAADYYGDAFKQCQRED--VRSLLPKDWIPVLAGKQAYFHALAEYHQSLVAKAQKKFGEEIARLQHALELIKTAQSRA 292 (346)
T ss_pred HHHHHHHHHHHHHHhcch--hccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566777666655321 11134678999999999999999999999999999999999999999999999887643
No 11
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.17 E-value=2 Score=28.49 Aligned_cols=27 Identities=11% Similarity=0.480 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy2472 433 CFYIAESLAALRRWRDCVALYSRATAY 459 (571)
Q Consensus 433 c~~lA~~y~~~~k~~EAlaL~~ra~~~ 459 (571)
++.+|.+|...|+|.+|+..|.++.+.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 568999999999999999999999865
No 12
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.07 E-value=4.2 Score=28.09 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Q psy2472 434 FYIAESLAALRRWRDCVALYSRATAYASDAA 464 (571)
Q Consensus 434 ~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~ 464 (571)
..||..|...|+|.||+.++.++....+...
T Consensus 6 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 36 (42)
T PF13374_consen 6 NNLANAYRAQGRYEEALELLEEALEIRERLL 36 (42)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHhhhhcchhhHHHHHHHHHHHHHh
Confidence 3899999999999999999999999887653
No 13
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=79.26 E-value=4.6 Score=26.95 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy2472 433 CFYIAESLAALRRWRDCVALYSRATAY 459 (571)
Q Consensus 433 c~~lA~~y~~~~k~~EAlaL~~ra~~~ 459 (571)
.+.+|.+|...|+|.+|+.-|.+|.+.
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 458999999999999999999999875
No 14
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=74.97 E-value=15 Score=39.41 Aligned_cols=73 Identities=14% Similarity=0.289 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Q psy2472 389 QDLVRLYEIILQNLGELQQLSGMEDDAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAAS 465 (571)
Q Consensus 389 ~eivrLyd~ilq~l~ei~eLpgv~~D~~l~~~le~~~~~~~A~rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~ 465 (571)
.+...+|+...+.+..+.+ .+ +.++..-+..+..+|+|.=.||.|......+|+-||++.++.|.+.+.++..
T Consensus 211 ~q~a~~Y~~A~~~l~~~~~--~i--~~~W~~~v~~K~~~f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k~a~~ 283 (353)
T cd09243 211 YETAKLFQKADDSLSSLDP--EY--SGKWRKYLQLKSVFYLAYAYCYHGETLLAKDKCGEAIRSLQESEKLYNKAEA 283 (353)
T ss_pred HHHHHHHHHHHHHHHcCCc--cc--cHHHHHHHHHHHHHHHHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888877765422 22 4678899999999999999999999999999999999999999999987764
No 15
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=74.03 E-value=55 Score=35.08 Aligned_cols=74 Identities=19% Similarity=0.174 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Q psy2472 390 DLVRLYEIILQNLGELQQLSGMEDDAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAAS 465 (571)
Q Consensus 390 eivrLyd~ilq~l~ei~eLpgv~~D~~l~~~le~~~~~~~A~rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~ 465 (571)
.+..+|....+.+..- .+.+ .=+.++..-+..+..||+|+=.|+.|......+++.++.+-++.|....++|..
T Consensus 206 qv~~~Y~~a~~~~~~~-~~~~-~i~~~W~~~v~~K~~~f~AlA~y~~a~~l~~~~~~g~~~a~L~~A~~~~e~a~~ 279 (350)
T cd09244 206 QVSDCYSEVHKLMNQE-PVKD-YIPYSWISLVEVKSEHYKALAHYYAAMGLLLEERRLLGKAHLKEALLLHEEALR 279 (350)
T ss_pred HHHHHHHHHHHHHhcc-cccc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666654420 0111 235789999999999999999999999999999999999999999998887776
No 16
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=73.25 E-value=6.7 Score=26.13 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2472 161 AYVSWIVGVLHFELKLWKSAMKNLKEAQVV 190 (571)
Q Consensus 161 AY~~~i~G~l~~E~~~W~~Al~~~~~ar~i 190 (571)
|..-+..|.+++.+++|++|+..|..|-.+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 345678999999999999999999988655
No 17
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=73.16 E-value=6.8 Score=25.84 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2472 162 YVSWIVGVLHFELKLWKSAMKNLKEAQVV 190 (571)
Q Consensus 162 Y~~~i~G~l~~E~~~W~~Al~~~~~ar~i 190 (571)
...+..|.+++..++|++|++.|..+-.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45578899999999999999999988655
No 18
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=72.03 E-value=8.3 Score=25.56 Aligned_cols=28 Identities=7% Similarity=0.319 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy2472 433 CFYIAESLAALRRWRDCVALYSRATAYA 460 (571)
Q Consensus 433 c~~lA~~y~~~~k~~EAlaL~~ra~~~~ 460 (571)
++.+|.+|...|.+.+|+..|.++.+.-
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4689999999999999999999998753
No 19
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=70.53 E-value=23 Score=38.84 Aligned_cols=53 Identities=9% Similarity=0.113 Sum_probs=48.6
Q ss_pred CchHHHHHHHHHHHHHHhHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Q psy2472 413 DDAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAAS 465 (571)
Q Consensus 413 ~D~~l~~~le~~~~~~~A~rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~ 465 (571)
-|.+|...+..+..+|+|.=|+++|...-..||+-||++-+..|...+..+..
T Consensus 279 i~~~~~~yl~~k~~~~~A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~L~~~~~ 331 (413)
T cd09245 279 VSEELLRYLSDLRRVARALACKFLGIDAGENGKVGEAIGWLRAAKKELEDLKS 331 (413)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCCHHHHHHHHHHHHHHHHHhhh
Confidence 46789999999999999999999999999999999999999999998776554
No 20
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=67.19 E-value=7.9 Score=25.23 Aligned_cols=26 Identities=12% Similarity=0.324 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Q psy2472 434 FYIAESLAALRRWRDCVALYSRATAY 459 (571)
Q Consensus 434 ~~lA~~y~~~~k~~EAlaL~~ra~~~ 459 (571)
|.+|.+|...|++.+|...|++....
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 47899999999999999999987653
No 21
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=67.14 E-value=11 Score=30.14 Aligned_cols=30 Identities=17% Similarity=0.398 Sum_probs=25.8
Q ss_pred hHH-HHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy2472 432 RCF-YIAESLAALRRWRDCVALYSRATAYAS 461 (571)
Q Consensus 432 rc~-~lA~~y~~~~k~~EAlaL~~ra~~~~~ 461 (571)
.|+ .+|.+|...|+|.+|+..|++|.+..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 36 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEE 36 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 344 899999999999999999999999944
No 22
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=66.93 E-value=42 Score=26.62 Aligned_cols=63 Identities=19% Similarity=0.189 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy2472 127 HLVSRLRKAASYAVQLQTLCEAEVCDARTKLEAQAYVSWIVGVLHFELKLWKSAMKNLKEAQVVYEK 193 (571)
Q Consensus 127 h~~~RLkKA~~~A~~L~~l~~~~~~d~~t~lEa~AY~~~i~G~l~~E~~~W~~Al~~~~~ar~iy~~ 193 (571)
...++..+|..+-++-+++++..+ + .-. -.+-...-.|.++...++++.|++.|..|-.|+++
T Consensus 16 ~~~~~~~~A~~~~~~al~~~~~~~-~--~~~-~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 16 RELGRYDEALDYYEKALDIEEQLG-D--DHP-DTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHTT-HHHHHHHHHHHHHHHHHTT-T--HHH-HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHC-C--CCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 456788999999999999965332 2 222 22555667899999999999999999999998874
No 23
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=63.10 E-value=13 Score=26.65 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Q psy2472 434 FYIAESLAALRRWRDCVALYSRATAY 459 (571)
Q Consensus 434 ~~lA~~y~~~~k~~EAlaL~~ra~~~ 459 (571)
+.+|..|...|++.+|..+|+++.+.
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999874
No 24
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=59.12 E-value=77 Score=25.09 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=34.0
Q ss_pred HhHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhccC
Q psy2472 429 KAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASSL 467 (571)
Q Consensus 429 ~A~rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~~~ 467 (571)
+|+.+...|..+-..|+|.+|+.+|..|.+.+..+...-
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~ 42 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSE 42 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccC
Confidence 466777888888999999999999999999999888744
No 25
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=54.22 E-value=23 Score=24.19 Aligned_cols=33 Identities=18% Similarity=0.115 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy2472 163 VSWIVGVLHFELKLWKSAMKNLKEAQVVYEKLM 195 (571)
Q Consensus 163 ~~~i~G~l~~E~~~W~~Al~~~~~ar~iy~~L~ 195 (571)
+..-.|.+++..++|++|+..+..+-.+++.+.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 36 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIRERLL 36 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHh
Confidence 344578899999999999999999999998874
No 26
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=54.07 E-value=1e+02 Score=25.52 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=31.0
Q ss_pred hHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhccC
Q psy2472 430 AFRCFYIAESLAALRRWRDCVALYSRATAYASDAASSL 467 (571)
Q Consensus 430 A~rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~~~ 467 (571)
|..+..-|--+-..|++.||+..|+.+.+.+.++....
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~ 43 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNY 43 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444566677789999999999999999999988755
No 27
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=54.03 E-value=23 Score=22.94 Aligned_cols=27 Identities=7% Similarity=0.113 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2472 162 YVSWIVGVLHFELKLWKSAMKNLKEAQ 188 (571)
Q Consensus 162 Y~~~i~G~l~~E~~~W~~Al~~~~~ar 188 (571)
++.|..|.+.+..++|++|++.|...-
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 456788999999999999999887653
No 28
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=54.01 E-value=20 Score=23.59 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2472 164 SWIVGVLHFELKLWKSAMKNLKEAQVV 190 (571)
Q Consensus 164 ~~i~G~l~~E~~~W~~Al~~~~~ar~i 190 (571)
.++.|.++..+++++.|++.|..+..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 357899999999999999999998765
No 29
>KOG2220|consensus
Probab=53.81 E-value=1e+02 Score=36.30 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhccC
Q psy2472 389 QDLVRLYEIILQNLGELQQLSGMEDDAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASSL 467 (571)
Q Consensus 389 ~eivrLyd~ilq~l~ei~eLpgv~~D~~l~~~le~~~~~~~A~rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~~~ 467 (571)
..++-+|+..+..+.... .-.-+.++..-+-++..+|.+..+|+++..-....++.|+.++++.+...+.+|.+..
T Consensus 205 ~q~~~fy~~Al~~~~~~~---~~~~~~~w~~~~~~k~~~~~~v~~~~~~~~~~e~~~~ge~i~~l~~~~~~l~~Aqk~~ 280 (714)
T KOG2220|consen 205 AQVVLFYEEALKAQIGAR---ADRITKEWLTLVAAKFARFAGVAYYYQSLFLHEKSKDGEAIARLQLSLLMLSEAQKCS 280 (714)
T ss_pred HHHHHHHHHHHHHHHHhh---hcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 446666777766665511 1144688999999999999999999999999999999999999999999999999865
No 30
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=52.08 E-value=19 Score=27.81 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2472 161 AYVSWIVGVLHFELKLWKSAMKNLKEAQVV 190 (571)
Q Consensus 161 AY~~~i~G~l~~E~~~W~~Al~~~~~ar~i 190 (571)
|+.....|.+++..++|++|+..|..|-.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~ 32 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL 32 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 566778999999999999999999987544
No 31
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=49.95 E-value=26 Score=26.80 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Q psy2472 434 FYIAESLAALRRWRDCVALYSRATAY 459 (571)
Q Consensus 434 ~~lA~~y~~~~k~~EAlaL~~ra~~~ 459 (571)
+.+|.+|...|+|.+|+.+|.++...
T Consensus 35 ~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 35 YLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36899999999999999999998754
No 32
>KOG2376|consensus
Probab=49.11 E-value=1.4e+02 Score=34.01 Aligned_cols=35 Identities=11% Similarity=0.160 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcc
Q psy2472 432 RCFYIAESLAALRRWRDCVALYSRATAYASDAASS 466 (571)
Q Consensus 432 rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~~ 466 (571)
-||..||++...|||.+|+-|+..|...+.+....
T Consensus 177 l~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~ 211 (652)
T KOG2376|consen 177 LLYNTACILIENGKYNQAIELLEKALRICREKLED 211 (652)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcc
Confidence 57789999999999999999999999999877653
No 33
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=47.68 E-value=23 Score=22.50 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHH
Q psy2472 433 CFYIAESLAALRRWRDCVALYS 454 (571)
Q Consensus 433 c~~lA~~y~~~~k~~EAlaL~~ 454 (571)
.+.+|..|...|.+.||.+++.
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3578999999999999999875
No 34
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=44.66 E-value=79 Score=24.24 Aligned_cols=53 Identities=15% Similarity=0.190 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Q psy2472 127 HLVSRLRKAASYAVQLQTLCEAEVCDARTKLEAQAYVSWIVGVLHFELK-LWKSAMKNLKEAQVV 190 (571)
Q Consensus 127 h~~~RLkKA~~~A~~L~~l~~~~~~d~~t~lEa~AY~~~i~G~l~~E~~-~W~~Al~~~~~ar~i 190 (571)
.-.+++.+|+.+-++.+++..+. +..-+..|.++++++ +|++|+..|..|-.+
T Consensus 14 ~~~~~~~~A~~~~~~ai~~~p~~-----------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 14 FQQGDYEEAIEYFEKAIELDPNN-----------AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHTTHHHHHHHHHHHHHHHSTTH-----------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCC-----------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 35678888998888888875321 235668899999998 899999999987543
No 35
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=43.21 E-value=2e+02 Score=24.03 Aligned_cols=66 Identities=12% Similarity=0.037 Sum_probs=46.8
Q ss_pred HHHHhHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhccCCCCCCccchH---HHHHHHHHHHhhhHHHH
Q psy2472 426 KTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASSLPSSGELATLK---PELATLEAAIDSNKYSA 494 (571)
Q Consensus 426 ~~~~A~rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~~~~~~~~~~~l~---~~l~~L~~~i~~~~~~~ 494 (571)
.|=+|+.|.-.|-.+-..|.+.+|+++|.++...+.++..-. .. +.... +.+..++..+......+
T Consensus 4 ~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~-~~--~~~~~~~w~~ar~~~~Km~~~~~~v 72 (79)
T cd02679 4 YYKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVP-VP--SAGVGSQWERARRLQQKMKTNLNMV 72 (79)
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCC-CC--cccccHHHHHHHHHHHHHHHHHHHH
Confidence 344678888889999999999999999999999999887632 11 11111 56666666666654433
No 36
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=43.02 E-value=26 Score=28.54 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q psy2472 166 IVGVLHFELKLWKSAMKNLKEA 187 (571)
Q Consensus 166 i~G~l~~E~~~W~~Al~~~~~a 187 (571)
+.|.++++.++|++|++.|..|
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhcC
Confidence 4477777777777777776553
No 37
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=39.52 E-value=2e+02 Score=23.64 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=27.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhhhccC
Q psy2472 435 YIAESLAALRRWRDCVALYSRATAYASDAASSL 467 (571)
Q Consensus 435 ~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~~~ 467 (571)
.-|--.-..|+|.||+.+|..|.+.+..+.+.-
T Consensus 11 ~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e 43 (77)
T cd02683 11 KRAVELDQEGRFQEALVCYQEGIDLLMQVLKGT 43 (77)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhC
Confidence 344556678999999999999999999888754
No 38
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=39.37 E-value=2e+02 Score=23.07 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=30.4
Q ss_pred HhHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcc
Q psy2472 429 KAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASS 466 (571)
Q Consensus 429 ~A~rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~~ 466 (571)
+|.....-|..+-..|+|.||+.+|..|.+.+..+.+.
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~ 44 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKV 44 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcc
Confidence 34444455667777899999999999999999988764
No 39
>KOG1840|consensus
Probab=38.32 E-value=6.4e+02 Score=28.55 Aligned_cols=159 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred EEEccccccc-------cCHHHHHHHHHHHHHHHHhhhhchhhHHHHHHHHHhHHHHHHHHHHHHhcCCCCCCCCCCCCc
Q psy2472 266 VSWRGRSVAV-------RSERVRVFLLAERSLDASLGQAGADKIELLESHLMDCKDAIQVIKEEVKQDPNSKNRTQGSGL 338 (571)
Q Consensus 266 I~Wr~~~~~i-------~~~~v~~~l~~~~~~~~~l~~~~~~~~~~yd~~l~~~~dA~~~~k~~l~~~~~~~~~~~d~~~ 338 (571)
+.|-.+.+.+ ..+.|+..+..+-..-..+.+ |++.+..|++|+++.++-.-.+..
T Consensus 219 ~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k--------~~eAv~ly~~AL~i~e~~~G~~h~---------- 280 (508)
T KOG1840|consen 219 EPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGK--------YDEAVNLYEEALTIREEVFGEDHP---------- 280 (508)
T ss_pred HHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHHhcCCCCH----------
Q ss_pred chHHHHHHHHHHHHHH------HHHHhhHHHHHHHHHhhhhcCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhccCCC
Q psy2472 339 SSLQYLHSYLMYIRLE------RTIQRNLLLAQQAKDNLKTAGNGQQPSEGKKTRPQDLVRLYEIILQNLGELQQLSGME 412 (571)
Q Consensus 339 ~~lq~l~~yi~y~~l~------~~ieRn~~Li~~~~~~~~~~~~~~~~~~~k~~k~~eivrLyd~ilq~l~ei~eLpgv~ 412 (571)
...+.++.|. .....-...++......... -.+.+.++-..+.++......+.+- +
T Consensus 281 ------~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~---------~~~~~~~v~~~l~~~~~~~~~~~~~---E 342 (508)
T KOG1840|consen 281 ------AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL---------LGASHPEVAAQLSELAAILQSMNEY---E 342 (508)
T ss_pred ------HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh---------hccChHHHHHHHHHHHHHHHHhcch---h
Q ss_pred CchHHHHHHHHHHHHHHhHhHHH---------HHHHHHHcCChHHHHHHHHHHHHHHHh
Q psy2472 413 DDAQYQESVEVRTKTYKAFRCFY---------IAESLAALRRWRDCVALYSRATAYASD 462 (571)
Q Consensus 413 ~D~~l~~~le~~~~~~~A~rc~~---------lA~~y~~~~k~~EAlaL~~ra~~~~~~ 462 (571)
.-..+.. .+...|-++.-|.. ||.+|...|||.||.-+|..|.+..++
T Consensus 343 ea~~l~q--~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 343 EAKKLLQ--KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred HHHHHHH--HHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
No 40
>COG4910 PduE Propanediol dehydratase, small subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.23 E-value=90 Score=28.57 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhHhHH-HH---HHHHHHcCCh
Q psy2472 396 EIILQNLGELQQLSGMEDDAQYQESVEVRTKTYKAFRCF-YI---AESLAALRRW 446 (571)
Q Consensus 396 d~ilq~l~ei~eLpgv~~D~~l~~~le~~~~~~~A~rc~-~l---A~~y~~~~k~ 446 (571)
|-|++..+-| -||-..-++|....+.....|+|.+|. |+ |..|+.-+|+
T Consensus 114 drIleiYnal--RPyRsskEELLaiAd~le~~YQA~ica~fvrEAA~lY~eRkkl 166 (170)
T COG4910 114 DRILEIYNAL--RPYRSSKEELLAIADTLEDTYQAEICARFVREAAELYAERKKL 166 (170)
T ss_pred HHHHHHHHHh--CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455666666 488888899999999999999999998 44 4555554443
No 41
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=37.64 E-value=66 Score=22.89 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy2472 163 VSWIVGVLHFELKLWKSAMKNLKEAQVVYEKLM 195 (571)
Q Consensus 163 ~~~i~G~l~~E~~~W~~Al~~~~~ar~iy~~L~ 195 (571)
.-...|-+.+|.++|+.|++-|..|=.|.+++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQEELL 35 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 345679999999999999999999988887764
No 42
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=37.54 E-value=63 Score=22.03 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2472 165 WIVGVLHFELKLWKSAMKNLKEAQVV 190 (571)
Q Consensus 165 ~i~G~l~~E~~~W~~Al~~~~~ar~i 190 (571)
...|.+++..++|++|++.|..+-.+
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45689999999999999999886443
No 43
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=37.28 E-value=49 Score=19.66 Aligned_cols=25 Identities=12% Similarity=0.410 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q psy2472 434 FYIAESLAALRRWRDCVALYSRATA 458 (571)
Q Consensus 434 ~~lA~~y~~~~k~~EAlaL~~ra~~ 458 (571)
+.+|.+|...|++.+|...|.++..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4789999999999999999987764
No 44
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=35.66 E-value=2.4e+02 Score=22.83 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=29.0
Q ss_pred HhHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhccC
Q psy2472 431 FRCFYIAESLAALRRWRDCVALYSRATAYASDAASSL 467 (571)
Q Consensus 431 ~rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~~~ 467 (571)
.-.+.-|--.-..|+|.||+.+|..|.+.+-.+...-
T Consensus 7 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e 43 (75)
T cd02678 7 IELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYE 43 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 3334445666788999999999999999999887643
No 45
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.98 E-value=68 Score=32.32 Aligned_cols=60 Identities=25% Similarity=0.272 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhchhhhHhhhhcCCcc
Q psy2472 159 AQAYVSWIVGVLHFELKLWKSAMKNLKEAQVVYEKLMSALNEEDALLYKQKVEELTPSLRYCAYNIGDQA 228 (571)
Q Consensus 159 a~AY~~~i~G~l~~E~~~W~~Al~~~~~ar~iy~~L~~~~~~~~~~l~~~~~~eidp~lRycay~l~~~~ 228 (571)
...|..+-.|..+|..++|+.|+..|..+-..|. ++=+...+.++-..++-|++++|+..
T Consensus 176 ~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr----------~egW~~l~~~~l~~l~~Ca~~~~~~~ 235 (247)
T PF11817_consen 176 MASYLSLEMAEEYFRLGDYDKALKLLEPAASSYR----------REGWWSLLTEVLWRLLECAKRLGDVE 235 (247)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----------hCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence 4567888889999999999999999998833332 11233456678899999999999664
No 46
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=33.70 E-value=53 Score=26.63 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=17.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q psy2472 435 YIAESLAALRRWRDCVALYSRA 456 (571)
Q Consensus 435 ~lA~~y~~~~k~~EAlaL~~ra 456 (571)
.+|++|...|+|.||+..|.+|
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhcC
Confidence 4588888889999998888765
No 47
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=33.60 E-value=2.5e+02 Score=22.96 Aligned_cols=37 Identities=16% Similarity=0.021 Sum_probs=28.8
Q ss_pred HhHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhccC
Q psy2472 431 FRCFYIAESLAALRRWRDCVALYSRATAYASDAASSL 467 (571)
Q Consensus 431 ~rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~~~ 467 (571)
.-...-|--.-..|+|.||+.||..+.+++-.+.+.-
T Consensus 7 i~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e 43 (75)
T cd02684 7 IALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYE 43 (75)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhC
Confidence 3334445556678999999999999999999887643
No 48
>PF08097 Toxin_26: Conotoxin T-superfamily; InterPro: IPR012631 This family consists of the T-superfamily of conotoxins. Eight different T-superfamily peptides from five Conus species were identified. These peptides share a consensus signal sequence, and a conserved arrangement of cysteine residues. T-superfamily peptides were found expressed in venom ducts of all major feeding types of Conus, suggesting that the T-superfamily is a large and diverse group of peptides, widely distributed in the 500 different Conus species [].; GO: 0005576 extracellular region
Probab=32.98 E-value=13 Score=18.95 Aligned_cols=7 Identities=57% Similarity=1.611 Sum_probs=5.8
Q ss_pred hhhhHhh
Q psy2472 215 PSLRYCA 221 (571)
Q Consensus 215 p~lRyca 221 (571)
|-||||-
T Consensus 4 pvirycc 10 (11)
T PF08097_consen 4 PVIRYCC 10 (11)
T ss_pred chhheec
Confidence 7899985
No 49
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=29.31 E-value=76 Score=24.60 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=23.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy2472 435 YIAESLAALRRWRDCVALYSRATAYAS 461 (571)
Q Consensus 435 ~lA~~y~~~~k~~EAlaL~~ra~~~~~ 461 (571)
..|.+|...|+|.+|+..|+++.+...
T Consensus 34 ~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 34 QRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 588999999999999999999985433
No 50
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=28.81 E-value=1.6e+02 Score=21.97 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy2472 129 VSRLRKAASYAVQLQTLCEAEVCDARTKLEAQAYVSWIVGVLHFELKLWKSAMKNLKEAQV 189 (571)
Q Consensus 129 ~~RLkKA~~~A~~L~~l~~~~~~d~~t~lEa~AY~~~i~G~l~~E~~~W~~Al~~~~~ar~ 189 (571)
.+++.+|..+......+... +. ...+..|.+++..++|+.|++.|..+-.
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~---~~--------~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 13 LGDYDEALEYYEKALELDPD---NA--------DAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCc---cH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667787777776655321 21 3445678888888999999888776543
No 51
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=28.62 E-value=3.1e+02 Score=21.95 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=26.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhhhcc
Q psy2472 435 YIAESLAALRRWRDCVALYSRATAYASDAASS 466 (571)
Q Consensus 435 ~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~~ 466 (571)
.-|.-.-..|+|.+|+.+|..|.+.+..+...
T Consensus 11 ~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~ 42 (75)
T cd02656 11 KQAVKEDEDGNYEEALELYKEALDYLLQALKA 42 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcc
Confidence 44555667799999999999999999988754
No 52
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=28.48 E-value=1.1e+02 Score=23.49 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhccCCCCCCccchHHHHHHHHHHHhhh
Q psy2472 433 CFYIAESLAALRRWRDCVALYSRATAYASDAASSLPSSGELATLKPELATLEAAIDSN 490 (571)
Q Consensus 433 c~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~~~~~~~~~~~l~~~l~~L~~~i~~~ 490 (571)
.|++|-.|...|.|.+|+...+.+++. - |.+ .+...|+..|+..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~-------e-----P~N--~Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI-------E-----PDN--RQAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-------T-----TS---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh-------C-----CCc--HHHHHHHHHHHHH
Confidence 469999999999999988877766542 1 444 5566677666654
No 53
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=27.89 E-value=1.4e+02 Score=24.58 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=28.8
Q ss_pred hHhHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Q psy2472 430 AFRCFYIAESLAALRRWRDCVALYSRATAYASDAAS 465 (571)
Q Consensus 430 A~rc~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~ 465 (571)
|......|--.-..|+|.||+.+|..|.+.+..+..
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~ 41 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEM 41 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 344445666777889999999999999999988753
No 54
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=27.52 E-value=1.3e+02 Score=23.19 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2472 129 VSRLRKAASYAVQLQTLCEAEVCDARTKLEAQAYVSWIVGVLHFELKLWKSAMKNLKEAQ 188 (571)
Q Consensus 129 ~~RLkKA~~~A~~L~~l~~~~~~d~~t~lEa~AY~~~i~G~l~~E~~~W~~Al~~~~~ar 188 (571)
..++.+|..+.+.+..+- +. .....+..|.+++..++|.+|++.|..+-
T Consensus 8 ~~~~~~A~~~~~~~l~~~--p~---------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 8 QEDYEEALEVLERALELD--PD---------DPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred CCCHHHHHHHHHHHHHhC--cc---------cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 346678888888888862 22 23445568999999999999999988764
No 55
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=27.46 E-value=68 Score=24.37 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q psy2472 434 FYIAESLAALRRWRDCVALYSRATA 458 (571)
Q Consensus 434 ~~lA~~y~~~~k~~EAlaL~~ra~~ 458 (571)
|.+|..|...|+|.+|...|+.+..
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~ 25 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK 25 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4578999999999999999988764
No 56
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=26.26 E-value=3e+02 Score=24.17 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=43.2
Q ss_pred HHHHHHhhccCCC--CchHHHHHHHHHHHHHHhHhHH-HHHHHHHHcCChHHHHHHHHHHHHHHHhhhccC
Q psy2472 400 QNLGELQQLSGME--DDAQYQESVEVRTKTYKAFRCF-YIAESLAALRRWRDCVALYSRATAYASDAASSL 467 (571)
Q Consensus 400 q~l~ei~eLpgv~--~D~~l~~~le~~~~~~~A~rc~-~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~~~ 467 (571)
+++++|.+...+. -|.... ...||++.+.. ..|..|...|....|+.||-|....+ +....-
T Consensus 10 ~s~~~L~~~a~~~~~~~~~~~-----l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~-~ki~~H 74 (115)
T PF08969_consen 10 SSLEELNKLADVFPEFDKNIP-----LKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV-EKIPKH 74 (115)
T ss_dssp CCHHHHHHCCCT-GGGSTTS------HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-CCHCCS
T ss_pred hhHHHHHHHHHHhcccccccC-----HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHhhcC
Confidence 4566666665442 222211 23488877776 89999999999999999999999999 666544
No 57
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=25.28 E-value=3.9e+02 Score=22.09 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=35.8
Q ss_pred HHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHhh
Q psy2472 166 IVGVLHFEL-KLWKSAMKNLKEAQVVYEKLMSALN-EEDALLYKQKVEEL 213 (571)
Q Consensus 166 i~G~l~~E~-~~W~~Al~~~~~ar~iy~~L~~~~~-~~~~~l~~~~~~ei 213 (571)
+.-.+..++ +++.+|+.++..+=.++.++....+ +....+|++++.++
T Consensus 10 a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY 59 (75)
T cd02682 10 AINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEY 59 (75)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 334455555 7999999999999988888877654 44678888887764
No 58
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=24.57 E-value=42 Score=22.59 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=9.7
Q ss_pred HHHHHhhccCCC
Q psy2472 401 NLGELQQLSGME 412 (571)
Q Consensus 401 ~l~ei~eLpgv~ 412 (571)
+++|++.||||-
T Consensus 9 s~eeL~~lpGIG 20 (30)
T PF00633_consen 9 SIEELMKLPGIG 20 (30)
T ss_dssp SHHHHHTSTT-S
T ss_pred CHHHHHhCCCcC
Confidence 689999999994
No 59
>PF12854 PPR_1: PPR repeat
Probab=24.04 E-value=1.2e+02 Score=20.52 Aligned_cols=21 Identities=10% Similarity=0.259 Sum_probs=18.4
Q ss_pred HHHHHHHHcCChHHHHHHHHH
Q psy2472 435 YIAESLAALRRWRDCVALYSR 455 (571)
Q Consensus 435 ~lA~~y~~~~k~~EAlaL~~r 455 (571)
.|-..|+..|+..||+.||+.
T Consensus 12 ~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 12 TLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHh
Confidence 577889999999999999974
No 60
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=23.92 E-value=98 Score=27.77 Aligned_cols=26 Identities=31% Similarity=0.412 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q psy2472 433 CFYIAESLAALRRWRDCVALYSRATA 458 (571)
Q Consensus 433 c~~lA~~y~~~~k~~EAlaL~~ra~~ 458 (571)
.|.+|.+|-..|++.+|+.+|.+|..
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~ 29 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALA 29 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 36789999999999999999999876
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=21.67 E-value=6.8e+02 Score=26.82 Aligned_cols=52 Identities=19% Similarity=0.304 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhchhhhHhhhhcCCccc
Q psy2472 163 VSWIVGVLHFELKLWKSAMKNLKEAQVVYEKLMSALNEEDALLYKQKVEELTPSLRYCAYNIGDQAG 229 (571)
Q Consensus 163 ~~~i~G~l~~E~~~W~~Al~~~~~ar~iy~~L~~~~~~~~~~l~~~~~~eidp~lRycay~l~~~~~ 229 (571)
++.|.|.++.-++++++|.+.+.. +.+.-+ +.+.++-|.|--|=.++|....
T Consensus 216 Asi~lG~v~~~~g~y~~AV~~~e~-------v~eQn~--------~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 216 ASIILGRVELAKGDYQKAVEALER-------VLEQNP--------EYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred hhhhhhHHHHhccchHHHHHHHHH-------HHHhCh--------HHHHHHHHHHHHHHHHhCCHHH
Confidence 466899999999999999887644 333322 2666677778777778886643
No 62
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=20.77 E-value=4.8e+02 Score=21.77 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=29.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Q psy2472 433 CFYIAESLAALRRWRDCVALYSRATAYASDAAS 465 (571)
Q Consensus 433 c~~lA~~y~~~~k~~EAlaL~~ra~~~~~~a~~ 465 (571)
.+.+|..+...|.+.+|+..+..|...+++...
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 557999999999999999999999999986654
No 63
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=20.66 E-value=72 Score=24.33 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q psy2472 434 FYIAESLAALRRWRDCVALYSRATA 458 (571)
Q Consensus 434 ~~lA~~y~~~~k~~EAlaL~~ra~~ 458 (571)
+.+|.+|...|++.+|..++.++..
T Consensus 29 ~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 29 LLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3599999999999999988876543
No 64
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=20.65 E-value=3.9e+02 Score=24.59 Aligned_cols=47 Identities=11% Similarity=0.012 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccHHH-HHHHHHH
Q psy2472 163 VSWIVGVLHFELKLWKSAMKNLKEAQVVYEKLMSALNEED-ALLYKQK 209 (571)
Q Consensus 163 ~~~i~G~l~~E~~~W~~Al~~~~~ar~iy~~L~~~~~~~~-~~l~~~~ 209 (571)
..+..+..++|.++|+.+-+.+..|--|...|....+.|. .++....
T Consensus 33 ~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld~E~Ggeia~nL 80 (132)
T COG1516 33 KFLKRAKEAIEQEDIEEKNESIDKAIDIITELRASLDYEKGGEIAQNL 80 (132)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCHhhcchHHHHH
Confidence 3446778999999999999999999999999998887664 3444443
No 65
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=20.11 E-value=1.7e+02 Score=24.59 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=22.5
Q ss_pred HhHH-HHHHHHHHcCChHHHHHHHHHHHHHH
Q psy2472 431 FRCF-YIAESLAALRRWRDCVALYSRATAYA 460 (571)
Q Consensus 431 ~rc~-~lA~~y~~~~k~~EAlaL~~ra~~~~ 460 (571)
++.+ |++..|.-.|||.++|+.-.+=...+
T Consensus 43 f~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A 73 (80)
T PF10579_consen 43 FRVLGYLIQAHMEWGKYREMLAFALQQLEIA 73 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666 89999999999999887654444433
Done!