RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2472
(571 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 2e-08
Identities = 76/508 (14%), Positives = 142/508 (27%), Gaps = 174/508 (34%)
Query: 163 VSWIV-GVLHFEL-KLWKSAMKNLKEAQVVYEKLMSALNEEDALLYKQKVEELTPS-LRY 219
+V F +L + K L E E A ++E EL L Y
Sbjct: 18 HVLLVPTASFFIASQLQEQFNKILPEP---TEGF--AADDEPT-----TPAELVGKFLGY 67
Query: 220 CAYNI--GDQAGIEDLMQLRSQTHGDLLHSLDSLMIQSKE-HSAEVLSEVSWRGRSVAVR 276
+ + + ++ L L ++ ++ + H+ + ++
Sbjct: 68 VSSLVEPSKVGQFDQVLNL-------CLTEFENCYLEGNDIHAL-AAKLLQENDTTLVKT 119
Query: 277 SERVRVFLLAERSLDASLGQAGADKIELLESHLMDCKDAIQVIKEEVKQDPNSKNRT--- 333
E ++ ++ A + L + + N++
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSA--LFRAV----------------GEGNAQLVAIFG 161
Query: 334 -QGSG---LSSLQYLHSYLMY-IRLERTIQR--NLL--LAQQAKDNLKTAGNG------- 377
QG+ L+ L Y Y + + I+ L L + D K G
Sbjct: 162 GQGNTDDYFEELRDL--YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 378 QQPSEGKKTRPQD--------------LVRL--YEIILQNLG----EL-QQLSGMEDDAQ 416
+ PS P +++L Y + + LG EL L G
Sbjct: 220 ENPS----NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA---TG 272
Query: 417 YQESVEV-----RTKTYKAFRC---------FYIAESLAALRRWRDCVALYSRATAYASD 462
+ + + T ++++F F+I R C Y + S
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG--------VR-CYEAYPNTSLPPSI 323
Query: 463 AASSLPSSGE------LATLKPELATLEAAIDS-NKY----SALAYS--------VLGTE 503
SL + E L+ ++ ++ N + + S V+
Sbjct: 324 LEDSLEN-NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS-- 380
Query: 504 GTPDTEPGTV-------AKPGAKLKKVPLAERLGEYYEDPSLASKSPNVIKLPPDMQ--P 554
G P + G A G ++P +ER KL + P
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER------------------KLKFSNRFLP 422
Query: 555 I----------PAKPLFF-DLAQNQLEF 571
+ PA L DL +N + F
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSF 450
Score = 38.5 bits (89), Expect = 0.007
Identities = 58/360 (16%), Positives = 105/360 (29%), Gaps = 132/360 (36%)
Query: 53 YQRYRGYCTRRIRRLRKTLHLPQGDKRHFKKREVTEQHLKDEKFIYIPLMLAERAWGYAM 112
YQ Y I+ +TL E+ L EK L + W
Sbjct: 177 YQTYHVLVGDLIKFSAETL------------SELIRTTLDAEKVFTQGLNI--LEW---- 218
Query: 113 QLRQEANTEPRKKFHLVS--------RLRKAASYAVQLQTL----------------CEA 148
L + P K + L+S + + A Y V + L
Sbjct: 219 -LE-NPSNTPDKDY-LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 149 EVCDA-------------RTKLEAQAYVSWIVGV--------LHFELKLWK--------- 178
+ A + +A + +I GV + +
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFI-GVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 179 -SAM---KNLKEAQVVYEKLMSALN----EEDAL---LY---KQKV--------EELTPS 216
S M NL + QV + ++ N + L K V L +
Sbjct: 335 PSPMLSISNLTQEQV--QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 217 LR-YCAYNIGDQAGIEDLMQLRSQTHGDLL------HSLDSLMIQSKEHSAEVL--SEVS 267
LR A + DQ+ I + + + L HS L++ + + + L + VS
Sbjct: 393 LRKAKAPSGLDQSRIP-FSERKLKFSNRFLPVASPFHS--HLLVPASDLINKDLVKNNVS 449
Query: 268 WRGRSVAVRSERVRVFLLAE----RSLDASLGQAGADKI-----------ELLESHLMDC 312
+ + + ++ V+ + R L S+ + D I + +H++D
Sbjct: 450 FNAKDI-----QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Score = 37.7 bits (87), Expect = 0.013
Identities = 43/243 (17%), Positives = 72/243 (29%), Gaps = 76/243 (31%)
Query: 85 EVTEQHLKDEKFIYIPLMLAERAW---GYAMQLRQEANTEPRKKFHLVSRLRKAASYAVQ 141
T HL K + I L+ + G L L LRKA + +
Sbjct: 354 NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY-----------GLNLTLRKAKAPSGL 402
Query: 142 LQTLCEAEVCDARTKL-EAQAYVSWI---VGV-LHFELKLWKSAMKNLKEAQVVYEKLMS 196
Q+ R E + S V H L L A + +
Sbjct: 403 DQS---------RIPFSERKLKFSNRFLPVASPFHSHL---------LVPAS---DLINK 441
Query: 197 ALNEEDALLYKQKVEELTPSLRYCAYNIGDQAGIEDLMQLRSQTHGDLLHSLDSLMIQSK 256
L + + + + K ++ Y+ D G D LR + G + + +I+
Sbjct: 442 DLVKNN-VSFNAK------DIQIPVYDTFD--G-SD---LRVLS-GSISERIVDCIIRLP 487
Query: 257 EHSAEVLSEVSWRGRSVAVRSERVRVFLLAERSLDASLGQAGADKIELLESHLMDCKDAI 316
V W + ++ + LD G GA + +L D +
Sbjct: 488 ---------VKWE-TTTQFKATHI---------LD--FGPGGASGLGVLTHRNKDGT-GV 525
Query: 317 QVI 319
+VI
Sbjct: 526 RVI 528
Score = 33.9 bits (77), Expect = 0.21
Identities = 37/206 (17%), Positives = 67/206 (32%), Gaps = 56/206 (27%)
Query: 367 AKDNLKTAGNGQQPSEGKKTRPQDLVRLYEIILQNLGEL---------QQLSGMEDDAQY 417
A+D A N + + G + +I++ N L +++ +
Sbjct: 1642 AQDVWNRADNHFKDTYG--------FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 418 QESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASSLPSSGELATLK 477
+ V+ + KT K F+ I E + + L AT + A L +
Sbjct: 1694 ETIVDGKLKTEKIFK--EINEHSTSYTFRSEKGLLS--ATQFTQPA---------LTLM- 1739
Query: 478 PELATLEA-----AIDSNK---------YSALAY--SVLGTEGTPDTEPGTVAKPGAKLK 521
E A E I ++ Y+ALA V+ E + V G ++
Sbjct: 1740 -EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE----VVFYRGMTMQ 1794
Query: 522 K-VPLAERLGEYYEDPSLASKSPNVI 546
VP E Y + + +P +
Sbjct: 1795 VAVPRDELGRSNY---GMIAINPGRV 1817
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 4e-08
Identities = 83/619 (13%), Positives = 181/619 (29%), Gaps = 228/619 (36%)
Query: 13 NAVKVQPKETPAAKPKVVYTIEILKIIKDAQQQHGLRHGDYQRYRGYCTRRIR---RLRK 69
+ +K + ++ + +Y +Q + D Q + Y R++ +LR+
Sbjct: 96 SPIKTEQRQP--SMMTRMYI-----------EQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 70 TLHLPQGDKRHFKKREVTEQHLKDEKFIYIPLMLAERAWGYAMQLRQEANTEPRKKFHLV 129
L L+ K + I +L G K +
Sbjct: 143 AL-----------------LELRPAKNVLIDGVL-----GSG-------------KTWVA 167
Query: 130 SRLRKAASYAVQLQTLCEAEVC-DARTKLEAQAYVSWIVGVLHFELKLWKSAMKNLKEAQ 188
+VC + + + + W+ LK S L+ Q
Sbjct: 168 ------------------LDVCLSYKVQCKMDFKIFWL------NLKNCNSPETVLEMLQ 203
Query: 189 VVYEKLMSALNE--EDALLYKQKVEELTPSLRYCAYNIGDQAGIEDLMQLRSQTHGDLLH 246
+ ++ + + K ++ + LR L++ + + LL
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-------------RLLKSKPYENC-LL- 248
Query: 247 SLDSLMIQSKEH------SAEVLSEVSWRGRSVA--VRSERVRVFLLAERSLDASLGQAG 298
L + +Q+ + S ++L ++ R + V + + L S+ + +
Sbjct: 249 VLLN--VQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV- 303
Query: 299 ADKIELLESHL-MDCKD-----------AIQVIKEEVKQDPNSKNRTQGSGLSSLQYLHS 346
LL +L +D + +I E ++ + H
Sbjct: 304 ---KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL---ATWD-------NWKH- 349
Query: 347 YLMYIRLERTIQRNLLLAQQAKDNLKTAGNGQQPSEGKKTR------PQD-------LVR 393
+ +L I+ +L + L+ P+E +K P L
Sbjct: 350 -VNCDKLTTIIESSL-------NVLE-------PAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 394 L-----YEIILQNLGELQQLSGMEDDAQ------YQESVEVRTKT-------------YK 429
+ ++ + +L + S +E + +E++ K Y
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 430 AFRCF------------YI-------------AESLAALR------RWRDCVALYSRATA 458
+ F Y E + R R+ + + R +
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-QKI--RHDS 511
Query: 459 YASDAASSLPSSGELATLKPELATLEAAI--DSNKYSALAYSVLGTEGTPDTEPGTVAKP 516
A +A+ S+ L TL+ +L + I + KY L ++L + P E +
Sbjct: 512 TAWNASGSI-----LNTLQ-QLKFYKPYICDNDPKYERLVNAIL--DFLPKIEENLICSK 563
Query: 517 GAKLKKVPLAERLGEYYED 535
L ++ L +E+
Sbjct: 564 YTDLLRIALMAEDEAIFEE 582
Score = 47.5 bits (112), Expect = 1e-05
Identities = 71/542 (13%), Positives = 140/542 (25%), Gaps = 157/542 (28%)
Query: 35 ILKIIKDAQQQHGLRHGDYQRYRGYCTRRIRRLRKTLHLPQGDKRHFKKREVTE--QHLK 92
++ IK Q+Q + Y R + K ++ R ++ + L+
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVS----RLQPYLKLRQALLELR 148
Query: 93 DEKFIYIPLM-------LAERAWGYAMQLRQEANTEPRKKFHL----VSRLRKAASYAVQ 141
K + I + +A + + F + + +
Sbjct: 149 PAKNVLIDGVLGSGKTWVA------LDVCLSYK-VQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 142 LQTLC------EAEVCDA---------------RTKLEAQAYVS--------WIVGVL-H 171
LQ L D R L+++ Y +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 172 FELK---L----WKS---AMKNLKEAQVVYEKLMSALNEEDA--LLYK---QKVEELTPS 216
F L L +K + + + L ++ LL K + ++L
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 217 LRYCAYN------IG-------------DQAGIEDLMQ-----LRSQTHGDLLHSLDSLM 252
+ N I + L L + D L
Sbjct: 322 V--LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 253 IQSKEH--SAEVLSEVSWRGRSVAVRSERVRVFL--LAERSLDASLGQAGADKIELLESH 308
+ +L + W V V V + L + SL Q I + +
Sbjct: 380 VFPPSAHIPTILL-SLIWF----DVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPSIY 432
Query: 309 L---MDCKDAIQVIKEEVKQDPNSKNRTQGSGLSSL---QYLHSYLMY--IRLERTIQRN 360
L + ++ + + V N L QY +S++ + +E +R
Sbjct: 433 LELKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP-ERM 490
Query: 361 LLLAQ--------QAKDNLKTAGNGQQPSEGKKTRPQDLVRLYE--IILQNLGELQQLSG 410
L + K ++ S Q L + Y+ I
Sbjct: 491 TLFRMVFLDFRFLEQK--IRHDSTAWNASGSILNTLQQL-KFYKPYIC------------ 535
Query: 411 MEDDAQYQESVEVRTKTYKAF--RC---FYIAESLAALRRWRDCVALYSRATAYASDAAS 465
++D +Y+ V F + ++ LR +AL + A +A
Sbjct: 536 -DNDPKYERLV----NAILDFLPKIEENLICSKYTDLLR-----IALMAEDEAIFEEAHK 585
Query: 466 SL 467
+
Sbjct: 586 QV 587
Score = 43.3 bits (101), Expect = 2e-04
Identities = 53/451 (11%), Positives = 123/451 (27%), Gaps = 149/451 (33%)
Query: 183 NLKEAQVVYEKLMSALNEEDALLYKQKVEELTPSLRYCAYNIGDQAGIEDLMQLRSQTHG 242
E Q Y+ ++S EDA + +++ + +I + I+ ++ + G
Sbjct: 10 ETGEHQYQYKDILSVF--EDAFVDNFDCKDVQDMPK----SILSKEEIDHIIMSKDAVSG 63
Query: 243 -DLLHSLDSLMIQSKEHSAEVLSEV-----SWRGRSVAVRSERVRVFLLAERSLDASLGQ 296
L +L+ + +E + + EV + + + S+ +
Sbjct: 64 TLRL--FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR--------QPSMMTRMYI 113
Query: 297 AGADKI----ELLESHLMDCKDAIQVIKEEVKQDPNSKNRT----QGSGLSSL--QYLHS 346
D++ ++ + + +++ + + +KN GSG + + S
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 347 Y---------LMYIRLERTIQRNLLLAQQAKDNLKTAGNGQQPSEGKKTRPQDLVRLYEI 397
Y + ++ L+ +L K + N S+ +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI----HS 229
Query: 398 ILQNLGELQQLSGMEDDAQYQESV----EVRT-KTYKAF--RC----------------- 433
I L L + Y+ + V+ K + AF C
Sbjct: 230 IQAELRRLLK------SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 434 --------------FYIAESLAALRRWRDCVALYSRATAYASDAASSLPSSGELATLKPE 479
E + L ++ DC LP E+ T P
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDC-------------RPQDLPR--EVLTTNP- 327
Query: 480 LATLEAAIDSNKYSALAYSVLGTEGTPDTEPGTVAKPGAKLKKVPLAERLGEYYEDPSLA 539
S++ ++ + ++ +
Sbjct: 328 ---------------RRLSII----------------AESIRDGL--ATW-DNWKHVNCD 353
Query: 540 SKSPNVIK-----LPPDMQPIPAKPLFFDLA 565
+ +I+ L P + +F L+
Sbjct: 354 KLT-TIIESSLNVLEPAEY----RKMFDRLS 379
Score = 39.1 bits (90), Expect = 0.004
Identities = 47/343 (13%), Positives = 101/343 (29%), Gaps = 109/343 (31%)
Query: 308 HLMD---------CKDAIQVIKEEVKQD-------------------------PNSKNRT 333
H MD KD + V ++ + ++ + T
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 334 ---------QGSGL------SSLQYLHSYLMYIRLERTIQRNLLLAQ--QAKDNLKTAGN 376
+ + L+ + +LM Q +++ + +D L N
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY---N 121
Query: 377 GQQP-SEGKKTRPQDLVRLYEIILQNLGELQQ-----LSGMEDDAQYQESV---EV---- 423
Q ++ +R Q ++L Q L EL+ + G+ ++ +V
Sbjct: 122 DNQVFAKYNVSRLQPYLKLR----QALLELRPAKNVLIDGV---LGSGKTWVALDVCLSY 174
Query: 424 RTKTYKAFRCFYIAESLAALRRWRDCV----ALYSRAT---AYASDAASSLPSSGELATL 476
+ + F+ F++ +L + L + SD +S++ ++
Sbjct: 175 KVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH--SI 230
Query: 477 KPELATL-------EAAI------DSNKYSALAYS--VLGTEGTPDTEPGTVAKPGAKLK 521
+ EL L + ++ ++A S +L T T + T A
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT--TRFKQV-TDFLSAATTT 287
Query: 522 KVPLAERLGEYYEDPSLA--SKSPNVI--KLPPDMQPIPAKPL 560
+ L D + K + LP ++ P
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT--NPR 328
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.025
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 16/43 (37%)
Query: 442 ALRRWRDCVALYSRATAYASDAASSLPSSGELATLKPELATLE 484
AL++ L + YA D+A P+ LA +K AT+E
Sbjct: 21 ALKK------LQASLKLYADDSA---PA---LA-IK---ATME 47
Score = 33.0 bits (74), Expect = 0.13
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 519 KLKKVPLAERLGEYYED--PSLASKS 542
LKK L L Y +D P+LA K+
Sbjct: 21 ALKK--LQASLKLYADDSAPALAIKA 44
Score = 31.8 bits (71), Expect = 0.28
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 8/31 (25%)
Query: 207 KQKVEELTPSLR-YC-----AYNIGDQAGIE 231
KQ +++L SL+ Y A I +A +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAI--KATME 47
Score = 29.1 bits (64), Expect = 2.0
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 14/39 (35%)
Query: 477 KPELATLEAAIDSNKYSALAYSVLGTEGTPDTEPGTVAK 515
K L L+A++ Y+ D+ P K
Sbjct: 19 KQALKKLQASL--KLYA------------DDSAPALAIK 43
Score = 28.4 bits (62), Expect = 3.5
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 15/45 (33%)
Query: 77 DKRHFKKREVTEQHLKDEKFIYIPLMLAERAWGYAMQLRQEANTE 121
+K+ KK + LK +Y + A A++ A E
Sbjct: 18 EKQALKK---LQASLK----LYAD----DSAPALAIK----ATME 47
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA
binding protein, KINK T ribosomal protein; 1.81A
{Giardia lamblia}
Length = 122
Score = 28.7 bits (64), Expect = 2.3
Identities = 8/52 (15%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 15 VKVQPKETPAAKPKVVYTIEILKIIKDAQQQHGLRHGDYQRYRGYCTRRIRR 66
+++ P+ P A ++ ++E+L ++K ++ G + +++ R
Sbjct: 1 MQIDPRAIPFANEEL--SLELLNLVKHGASLQAIKRGANE-----ALKQVNR 45
>3v2d_8 50S ribosomal protein L35; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus}
PDB: 1vsp_a 2hgj_7 2hgq_7 2hgu_7 1vsa_a 2j03_8 2jl6_8
2jl8_8 2v47_8 2v49_8 2wdi_8 2wdj_8 2wdl_8 2wdn_8 2wh2_8
2wh4_8 2wrj_8 2wrl_8 2wro_8 2wrr_8 ...
Length = 65
Score = 27.2 bits (61), Expect = 3.0
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 44 QQHGLRHGDYQRYRGYCTRRIRRLRKTLHLPQGDKRHFKK 83
+ G RH ++Q+ + IR+ + L + + K
Sbjct: 25 MKTGKRHLNWQK----SGKEIRQKGRKFVLAKPEAERIKL 60
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 29.4 bits (66), Expect = 3.7
Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 13/153 (8%)
Query: 353 LERTIQRNLLLAQQAKDNLKTAGNGQQPSEGKKTRPQDLVRLYEIILQNLGELQQLSGME 412
++ + +LL A + D + E L LY + L +L E
Sbjct: 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKE----DAAFLRSLYMLKLNKTSHEDELRRAE 292
Query: 413 DDAQYQESVEVRTKTYKAFRCFYIAESLAALRRWRDCVALYSRATAYASDAASSLPSSGE 472
D Y S+ K+ A++L R+ D +A+ ++ P
Sbjct: 293 D---YLSSINGLEKSSDLL--LCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLA 347
Query: 473 -LATLK--PELATL-EAAIDSNKYSALAYSVLG 501
L +L + +D + A+ + +G
Sbjct: 348 SLHESGEKNKLYLISNDLVDRHPEKAVTWLAVG 380
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp,
clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A
{Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B*
3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Length = 373
Score = 28.3 bits (64), Expect = 7.2
Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 23/118 (19%)
Query: 294 LGQAGADKIELLESHLM--DCKDAIQVIKEEVKQDPNSKNRTQGSGLSSLQYLHSYLMYI 351
LG D+ L ++ + + + +I E + G+ L L +
Sbjct: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAAR-----------GIEWEALLVEMLGLL 289
Query: 352 RLERTIQRNLLLAQQAKDNLKTAGNGQQP---SEGKKTRPQDLVRLYEIILQNLGELQ 406
+ + Q + L + + P D+ Y+ +L EL
Sbjct: 290 H-------RIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELP 340
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P
structure initiative, nysgxrc; 2.16A {Enterococcus
faecalis} SCOP: a.118.26.1 d.37.1.1
Length = 286
Score = 28.0 bits (63), Expect = 7.7
Identities = 9/88 (10%), Positives = 26/88 (29%), Gaps = 17/88 (19%)
Query: 180 AMKNLKEAQVVYEKLMSALNEEDALLYKQKVEELTPSLRYCAYNIGDQAGIEDLMQLRSQ 239
++ +E + + L+ L + +++ L +Q L +
Sbjct: 1 SLNEGQEMEEQFALLLETLKNQQMNEFRELFLALHIY---------EQGQF--YQSLDEK 49
Query: 240 THGDLLHSLDSLMIQSKEHSAEVLSEVS 267
L + L + A++ +
Sbjct: 50 DRQHLYNYLS------PKELADMFDVIE 71
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat
domains, transcription-cell cycle complex; 3.00A
{Schizosaccharomyces pombe}
Length = 235
Score = 28.1 bits (62), Expect = 8.0
Identities = 5/33 (15%), Positives = 9/33 (27%)
Query: 43 QQQHGLRHGDYQRYRGYCTRRIRRLRKTLHLPQ 75
L + Y + ++ L L Q
Sbjct: 14 TDLESLEPTCLSKDTIYQWKVVQTFGDRLRLRQ 46
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD;
nucleoside-phosphorylases; 2.05A {Sulfolobus
solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A
1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Length = 345
Score = 27.9 bits (63), Expect = 8.8
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 11/79 (13%)
Query: 437 AESLAALRR--------WRDCVALYSRATAYASDAASSLPSSGELA--TLKPELATLEAA 486
+S + R + + + + +A D E A ++ L L
Sbjct: 267 EDSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRVGDFREGYEYADHLIEKSLDKLNEI 326
Query: 487 ID-SNKYSALAYSVLGTEG 504
I + + L V+ + G
Sbjct: 327 ISMNGDVTKLKTIVVKSSG 345
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast,
His-TAG, RNA binding protein; 1.80A {Saccharomyces
cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A
3siv_A 1e7k_A
Length = 134
Score = 27.2 bits (60), Expect = 8.8
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 16 KVQPKETPAAKPKVVYTIEILKIIKDAQQQHGLRHGDYQRYRGYCTRRIRR 66
PK P A + T +IL +++ A L+ G + T+ + R
Sbjct: 3 APNPKAFPLADAAL--TQQILDVVQQAANLRQLKKGANE-----ATKTLNR 46
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 27.8 bits (61), Expect = 9.3
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 126 FHLVSRLRKAASYAVQLQTLCE----AEVCDARTKLEAQAYVSWIVGVLHFELKLWKSAM 181
+ + S L +A E +A ++ V+W+ V++ + W +
Sbjct: 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVI 155
Query: 182 KNLKEAQVVYEKLMSA 197
+K A +K ++
Sbjct: 156 DQVKSAGKWPDKFLAG 171
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.368
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,412,880
Number of extensions: 509983
Number of successful extensions: 1096
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1084
Number of HSP's successfully gapped: 46
Length of query: 571
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 472
Effective length of database: 3,937,614
Effective search space: 1858553808
Effective search space used: 1858553808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.4 bits)