Query psy2473
Match_columns 213
No_of_seqs 134 out of 1114
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 17:11:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 8.3E-63 1.8E-67 472.0 15.4 205 4-213 187-443 (1463)
2 cd01377 MYSc_type_II Myosin mo 100.0 3.5E-61 7.6E-66 451.5 21.2 205 4-213 132-389 (693)
3 PTZ00014 myosin-A; Provisional 100.0 3E-61 6.4E-66 456.3 19.2 204 5-213 217-477 (821)
4 cd01381 MYSc_type_VII Myosin m 100.0 6.5E-61 1.4E-65 448.0 20.6 205 5-213 118-377 (671)
5 cd01380 MYSc_type_V Myosin mot 100.0 2.6E-60 5.7E-65 445.5 20.7 207 5-213 124-383 (691)
6 cd01383 MYSc_type_VIII Myosin 100.0 3.2E-60 6.9E-65 443.4 20.3 205 5-213 123-380 (677)
7 cd01385 MYSc_type_IX Myosin mo 100.0 5.1E-60 1.1E-64 443.3 21.0 207 5-213 129-391 (692)
8 cd01387 MYSc_type_XV Myosin mo 100.0 1.5E-59 3.2E-64 439.3 19.7 203 5-213 120-376 (677)
9 cd01378 MYSc_type_I Myosin mot 100.0 2.5E-59 5.5E-64 437.8 20.4 205 5-213 121-381 (674)
10 cd01379 MYSc_type_III Myosin m 100.0 3.7E-59 8E-64 434.8 20.2 209 5-213 119-388 (653)
11 cd01384 MYSc_type_XI Myosin mo 100.0 4.9E-59 1.1E-63 435.2 20.4 203 5-213 124-382 (674)
12 cd01382 MYSc_type_VI Myosin mo 100.0 2.8E-58 6.1E-63 432.9 20.5 203 5-213 123-412 (717)
13 smart00242 MYSc Myosin. Large 100.0 3.3E-58 7.2E-63 431.4 20.2 205 4-213 126-384 (677)
14 cd00124 MYSc Myosin motor doma 100.0 5.1E-58 1.1E-62 430.7 20.7 204 5-213 119-377 (679)
15 KOG0164|consensus 100.0 1.4E-57 3.1E-62 411.0 13.6 207 5-212 131-389 (1001)
16 PF00063 Myosin_head: Myosin h 100.0 9.2E-57 2E-61 424.1 17.5 205 4-212 121-378 (689)
17 KOG0162|consensus 100.0 7.4E-56 1.6E-60 400.4 13.1 206 4-213 138-398 (1106)
18 cd01386 MYSc_type_XVIII Myosin 100.0 7E-55 1.5E-59 411.3 19.4 200 8-212 123-387 (767)
19 KOG0163|consensus 100.0 4.1E-52 8.8E-57 377.1 14.5 204 4-213 175-466 (1259)
20 KOG0161|consensus 100.0 6.9E-49 1.5E-53 389.9 15.0 204 5-213 207-463 (1930)
21 KOG0160|consensus 100.0 1.2E-47 2.7E-52 359.1 13.1 205 4-213 127-383 (862)
22 KOG4229|consensus 100.0 3.9E-41 8.4E-46 322.0 8.1 207 4-213 180-442 (1062)
23 PHA01976 helix-turn-helix prot 80.2 2.9 6.3E-05 27.1 3.6 23 112-134 40-62 (67)
24 PF01381 HTH_3: Helix-turn-hel 76.3 2.4 5.3E-05 26.2 2.2 21 113-133 35-55 (55)
25 PF12844 HTH_19: Helix-turn-he 66.8 6.5 0.00014 25.1 2.7 23 113-135 38-60 (64)
26 PF13443 HTH_26: Cro/C1-type H 64.1 5.5 0.00012 25.4 1.9 23 113-135 37-59 (63)
27 PRK13890 conjugal transfer pro 59.6 14 0.00031 27.3 3.7 44 92-135 7-66 (120)
28 PHA02591 hypothetical protein; 58.5 24 0.00052 24.3 4.2 33 92-137 48-80 (83)
29 cd01363 Motor_domain Myosin an 53.9 6.8 0.00015 31.1 1.2 27 11-37 58-85 (186)
30 COG4103 Uncharacterized protei 53.2 16 0.00036 28.1 3.1 19 117-135 124-142 (148)
31 PRK10856 cytoskeletal protein 50.7 20 0.00044 31.5 3.7 47 93-139 17-85 (331)
32 smart00530 HTH_XRE Helix-turn- 50.5 16 0.00034 21.1 2.2 18 115-132 38-55 (56)
33 PF12728 HTH_17: Helix-turn-he 50.2 19 0.00042 21.8 2.6 24 119-142 4-27 (51)
34 PF10078 DUF2316: Uncharacteri 48.6 46 0.001 23.5 4.5 37 91-140 11-47 (89)
35 PF02954 HTH_8: Bacterial regu 48.4 55 0.0012 19.2 5.1 32 93-137 8-39 (42)
36 KOG2612|consensus 47.9 34 0.00074 24.1 3.7 49 161-209 7-66 (103)
37 COG1924 Activator of 2-hydroxy 47.6 44 0.00094 30.0 5.2 66 117-182 266-341 (396)
38 PF13560 HTH_31: Helix-turn-he 46.6 18 0.00039 23.1 2.2 22 113-134 41-62 (64)
39 PRK09706 transcriptional repre 46.3 29 0.00064 25.9 3.6 41 94-134 9-65 (135)
40 PF10075 PCI_Csn8: COP9 signal 44.4 25 0.00054 26.6 2.9 40 118-157 99-138 (143)
41 cd00093 HTH_XRE Helix-turn-hel 41.2 29 0.00063 20.0 2.4 16 121-136 17-32 (58)
42 TIGR01764 excise DNA binding d 40.8 35 0.00076 19.9 2.7 23 119-141 4-26 (49)
43 TIGR02607 antidote_HigA addict 40.8 49 0.0011 21.7 3.7 22 114-135 45-66 (78)
44 TIGR00270 conserved hypothetic 39.7 41 0.00088 26.2 3.5 46 90-135 68-130 (154)
45 PRK09943 DNA-binding transcrip 39.6 39 0.00084 26.6 3.5 43 93-135 10-68 (185)
46 cd04762 HTH_MerR-trunc Helix-T 38.3 41 0.00088 19.4 2.7 24 119-142 3-26 (49)
47 PF09048 Cro: Cro; InterPro: 37.0 60 0.0013 21.1 3.3 25 120-144 16-41 (59)
48 PRK09430 djlA Dna-J like membr 35.8 53 0.0011 27.9 3.9 24 116-139 151-174 (267)
49 cd07311 terB_like_1 tellurium 35.7 60 0.0013 25.1 3.8 21 117-137 111-131 (150)
50 TIGR03070 couple_hipB transcri 35.4 48 0.001 20.0 2.8 31 95-138 7-37 (58)
51 PF00376 MerR: MerR family reg 35.2 49 0.0011 19.2 2.5 21 119-139 2-22 (38)
52 PRK07539 NADH dehydrogenase su 34.6 1.3E+02 0.0029 23.1 5.7 28 115-142 39-66 (154)
53 PRK07571 bidirectional hydroge 34.4 1.7E+02 0.0037 23.1 6.3 30 114-143 52-81 (169)
54 PF12244 DUF3606: Protein of u 34.2 71 0.0015 20.4 3.4 28 112-139 16-43 (57)
55 PF07499 RuvA_C: RuvA, C-termi 33.8 23 0.00051 21.5 1.1 19 92-110 3-21 (47)
56 cd04761 HTH_MerR-SF Helix-Turn 33.8 49 0.0011 19.5 2.6 24 119-142 3-26 (49)
57 smart00422 HTH_MERR helix_turn 33.6 1.2E+02 0.0026 19.2 4.7 41 119-159 3-45 (70)
58 TIGR01958 nuoE_fam NADH-quinon 32.6 1.6E+02 0.0035 22.4 5.9 28 115-142 33-60 (148)
59 PRK06424 transcription factor; 32.3 30 0.00066 26.6 1.7 43 90-132 83-142 (144)
60 PF08667 BetR: BetR domain; I 32.0 1.2E+02 0.0025 23.6 4.9 44 91-134 6-69 (147)
61 KOG0161|consensus 31.6 37 0.0008 36.8 2.6 40 169-212 428-467 (1930)
62 PRK05988 formate dehydrogenase 29.9 1.8E+02 0.0039 22.6 5.7 30 114-143 39-68 (156)
63 PF00325 Crp: Bacterial regula 29.8 66 0.0014 18.1 2.4 20 120-139 6-25 (32)
64 PF08998 Epsilon_antitox: Bact 29.0 1E+02 0.0022 21.6 3.6 27 159-188 10-36 (89)
65 TIGR02293 TAS_TIGR02293 putati 26.7 1.6E+02 0.0034 22.0 4.8 75 116-191 25-108 (133)
66 PF03683 UPF0175: Uncharacteri 26.4 58 0.0012 22.0 2.1 26 118-143 36-61 (76)
67 cd00086 homeodomain Homeodomai 26.3 84 0.0018 19.1 2.8 29 113-141 24-52 (59)
68 smart00389 HOX Homeodomain. DN 26.0 94 0.002 18.8 3.0 29 113-141 24-52 (56)
69 COG5022 Myosin heavy chain [Cy 25.8 65 0.0014 33.8 3.1 44 165-212 404-447 (1463)
70 PF09666 Sororin: Sororin prot 25.4 24 0.00053 27.7 0.1 14 199-212 98-111 (162)
71 PF13693 HTH_35: Winged helix- 24.9 62 0.0014 22.2 2.0 19 115-133 40-58 (78)
72 PRK10072 putative transcriptio 24.8 82 0.0018 22.4 2.7 20 91-110 34-53 (96)
73 PF13411 MerR_1: MerR HTH fami 24.5 88 0.0019 19.9 2.7 23 119-141 3-25 (69)
74 smart00497 IENR1 Intron encode 23.7 1.3E+02 0.0028 18.0 3.3 29 116-144 17-45 (53)
75 PF00046 Homeobox: Homeobox do 23.3 91 0.002 19.1 2.5 29 113-141 24-52 (57)
76 PF01476 LysM: LysM domain; I 23.2 1.1E+02 0.0024 17.4 2.8 24 113-136 3-26 (44)
77 PF08984 DUF1858: Domain of un 22.7 30 0.00064 22.1 0.1 46 89-134 11-59 (59)
78 PRK09726 antitoxin HipB; Provi 22.3 92 0.002 21.3 2.6 40 93-132 15-70 (88)
79 COG2886 Uncharacterized small 21.9 93 0.002 21.9 2.5 30 115-144 40-69 (88)
80 cd04763 HTH_MlrA-like Helix-Tu 21.9 1E+02 0.0022 19.8 2.6 20 119-138 3-22 (68)
81 cd04764 HTH_MlrA-like_sg1 Heli 21.9 1E+02 0.0022 19.7 2.6 20 119-138 3-22 (67)
82 PRK08154 anaerobic benzoate ca 21.9 1.1E+02 0.0024 26.3 3.5 43 93-135 31-89 (309)
83 PRK02866 cyanate hydratase; Va 21.8 1.7E+02 0.0036 22.7 4.1 25 114-139 45-69 (147)
84 COG2522 Predicted transcriptio 21.7 3.5E+02 0.0075 20.2 6.4 22 120-141 26-47 (119)
85 PF15026 FAM74: FAM74 protein 21.7 2.1E+02 0.0045 20.7 4.2 29 163-191 87-115 (127)
86 TIGR03830 CxxCG_CxxCG_HTH puta 21.6 1.1E+02 0.0023 22.2 2.9 17 121-137 83-99 (127)
87 PF11758 Bacteriocin_IIi: Aure 21.5 60 0.0013 20.3 1.3 14 172-185 36-49 (51)
88 PF01978 TrmB: Sugar-specific 21.4 15 0.00034 23.8 -1.5 39 100-138 2-44 (68)
89 COG3324 Predicted enzyme relat 20.9 48 0.001 25.0 0.9 17 165-181 22-38 (127)
90 TIGR02935 probable nitrogen fi 20.9 25 0.00055 26.9 -0.6 9 205-213 109-117 (140)
91 PF02787 CPSase_L_D3: Carbamoy 20.7 1.6E+02 0.0035 21.8 3.8 79 44-139 11-95 (123)
92 cd01385 MYSc_type_IX Myosin mo 20.4 1E+02 0.0022 30.0 3.2 42 165-207 349-390 (692)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=8.3e-63 Score=472.00 Aligned_cols=205 Identities=37% Similarity=0.601 Sum_probs=191.2
Q ss_pred cccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------C----CCC--------Cccch---------hHHHHHHhcC
Q psy2473 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------H----QSK--------GKSSS---------WKTLTVSSSG 56 (213)
Q Consensus 4 ~~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~----~~G--------EksRv---------fhiFYqll~g 56 (213)
.+.|+++|+++||||||||||||+|||||||||| + ++| ||||| |||||||++|
T Consensus 187 ~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~YLLEKSRVV~Q~~~ERNYHIFYQll~G 266 (1463)
T COG5022 187 ISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLLEKSRVVHQNKNERNYHIFYQLLAG 266 (1463)
T ss_pred HHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhhhhhhhhhhccCCCCccchhhhhhHhcC
Confidence 4589999999999999999999999999999999 3 344 99999 9999999999
Q ss_pred CCHHHHhhcccCCCcccccccCCCCC-CCCCchHHHHHHHHHHHHhcCCCcccee------------------------e
Q psy2473 57 ATPEQRKEFILEDPKTYLFLSNGNLP-VPGVDDAVEFQATVQAMNIMGMTNEDYS------------------------A 111 (213)
Q Consensus 57 ~~~~~~~~l~L~~~~~~~yl~~~~~~-~~~~~d~~~f~~l~~al~~lg~~~~e~~------------------------~ 111 (213)
.++..++.+++.++.+|.|+++++|. ++|++|.++|+.++.||+++||+.+|+. +
T Consensus 267 ~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq~~IF~iLAaILhiGNIef~~~r~g~a 346 (1463)
T COG5022 267 DPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKILAAILHIGNIEFKEDRNGAA 346 (1463)
T ss_pred ChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhcceeeeecccchh
Confidence 77777788888899999999999776 9999999999999999999999999998 4
Q ss_pred ecCChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCc
Q psy2473 112 SLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 191 (213)
Q Consensus 112 ~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~~ 191 (213)
.+.+++.++.+|.|||||+..|.++|++|.+++++|.|.+|++..||..+||||||+||++||+|||++||.+|.....
T Consensus 347 ~~~~~~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~- 425 (1463)
T COG5022 347 IFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAA- 425 (1463)
T ss_pred hcCCchHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc-
Confidence 6778889999999999999999999999999999999999999999999999999999999999999999999987655
Q ss_pred ceeeecceeeeeeccCCCccCC
Q psy2473 192 VYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 192 ~~~~~~d~~GilDifGFE~~~~ 213 (213)
.-.+||||||||||.|+|
T Consensus 426 ----~~~fIGVLDIyGFEiFEk 443 (1463)
T COG5022 426 ----ASNFIGVLDIYGFEIFEK 443 (1463)
T ss_pred ----cccceeEEeecchhhhcc
Confidence 235899999999999997
No 2
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=3.5e-61 Score=451.50 Aligned_cols=205 Identities=47% Similarity=0.725 Sum_probs=190.3
Q ss_pred cccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcC
Q psy2473 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSG 56 (213)
Q Consensus 4 ~~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g 56 (213)
..+|+++|+++||||||||||||++|+||||||| +..| ||||| ||||||||+|
T Consensus 132 ~~~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G 211 (693)
T cd01377 132 QGTLEDQILQANPILEAFGNAKTVRNDNSSRFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSG 211 (693)
T ss_pred cccHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcC
Confidence 3579999999999999999999999999999999 4444 99999 9999999999
Q ss_pred CCHHHHhhcccCCC-cccccccCCCCCCCCCchHHHHHHHHHHHHhcCCCcccee-------------------------
Q psy2473 57 ATPEQRKEFILEDP-KTYLFLSNGNLPVPGVDDAVEFQATVQAMNIMGMTNEDYS------------------------- 110 (213)
Q Consensus 57 ~~~~~~~~l~L~~~-~~~~yl~~~~~~~~~~~d~~~f~~l~~al~~lg~~~~e~~------------------------- 110 (213)
++++++++|+|.+. ..|+||+++++..++++|+++|++++.||+.|||+++|+.
T Consensus 212 ~~~~~~~~l~L~~~~~~y~yL~~~~~~~~~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~ 291 (693)
T cd01377 212 ADPELKSMLLLTGNPNDYRYLSQGELTIPGVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQ 291 (693)
T ss_pred CCHHHHHHcCCCCchhcCeeeCCCCccCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCc
Confidence 99999999999865 8999999998888899999999999999999999999887
Q ss_pred eecCChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC
Q psy2473 111 ASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKR 190 (213)
Q Consensus 111 ~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~ 190 (213)
+.+.+.+.++.||+||||++++|.++|+++++.+++|.+++|++++||..+||+|||+||++||+|||++||.+|.+...
T Consensus 292 ~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~ 371 (693)
T cd01377 292 AELDGTEEADKAAHLLGVNSADLLKALLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQ 371 (693)
T ss_pred cccCChHHHHHHHHHhCCCHHHHHHHhcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999988633
Q ss_pred cceeeecceeeeeeccCCCccCC
Q psy2473 191 QVYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 191 ~~~~~~~d~~GilDifGFE~~~~ 213 (213)
. ..+||||||||||+|++
T Consensus 372 ~-----~~~IgiLDIfGFE~f~~ 389 (693)
T cd01377 372 R-----AYFIGVLDIAGFEIFDF 389 (693)
T ss_pred C-----CceEEEEecccccccCC
Confidence 2 24789999999999974
No 3
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=3e-61 Score=456.33 Aligned_cols=204 Identities=26% Similarity=0.476 Sum_probs=187.0
Q ss_pred ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCC
Q psy2473 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGA 57 (213)
Q Consensus 5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~ 57 (213)
.+|+++|++|||||||||||||++|+||||||| +..| ||||| ||||||||+|+
T Consensus 217 ~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~ 296 (821)
T PTZ00014 217 LKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGA 296 (821)
T ss_pred ccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEeeEEEEEEeccCceeeecCCCCCCEeHHHHHHhCC
Confidence 479999999999999999999999999999999 4444 99999 99999999999
Q ss_pred CHHHHhhcccCCCcccccccCCCCCCCCCchHHHHHHHHHHHHhcCCCcccee---------------------------
Q psy2473 58 TPEQRKEFILEDPKTYLFLSNGNLPVPGVDDAVEFQATVQAMNIMGMTNEDYS--------------------------- 110 (213)
Q Consensus 58 ~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~d~~~f~~l~~al~~lg~~~~e~~--------------------------- 110 (213)
++++|++|+|.++.+|+||++++..+++++|.++|+.++.||+.|||+++|+.
T Consensus 297 ~~~~~~~l~L~~~~~y~yL~~~~~~~~~~dD~~~f~~~~~A~~~lg~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~ 376 (821)
T PTZ00014 297 NDEMKEKYKLKSLEEYKYINPKCLDVPGIDDVKDFEEVMESFDSMGLSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTD 376 (821)
T ss_pred CHHHHHHcCCCChHhccccCCCCccCCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEeccccCCCCC
Confidence 99999999999999999999876668999999999999999999999999987
Q ss_pred -eecC--ChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy2473 111 -ASLP--DNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDR 187 (213)
Q Consensus 111 -~~~~--~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~ 187 (213)
+.+. +.+.++.||+||||++++|.++|+++++.+++|.+++|++++||..+||||||+||+|||+|||++||.+|.+
T Consensus 377 ~~~i~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~ 456 (821)
T PTZ00014 377 AAAISDESLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEP 456 (821)
T ss_pred ceeccCCCHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1222 2458999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCcceeeecceeeeeeccCCCccCC
Q psy2473 188 TKRQVYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 188 ~~~~~~~~~~d~~GilDifGFE~~~~ 213 (213)
.... -.+||||||||||+|+.
T Consensus 457 ~~~~-----~~~IGiLDI~GFE~f~~ 477 (821)
T PTZ00014 457 PGGF-----KVFIGMLDIFGFEVFKN 477 (821)
T ss_pred Cccc-----CceEEEEecccccccCc
Confidence 5542 24799999999999963
No 4
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=6.5e-61 Score=448.00 Aligned_cols=205 Identities=32% Similarity=0.507 Sum_probs=189.4
Q ss_pred ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCC
Q psy2473 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGA 57 (213)
Q Consensus 5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~ 57 (213)
+.|+++|++|||||||||||||++|+||||||| +..| ||||| ||||||||+|+
T Consensus 118 ~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~ 197 (671)
T cd01381 118 SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGL 197 (671)
T ss_pred CcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCcEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCC
Confidence 468999999999999999999999999999999 4444 99999 99999999999
Q ss_pred CHHHHhhcccCCCcccccccCCCCC-CCCCchHHHHHHHHHHHHhcCCCcccee--------------------------
Q psy2473 58 TPEQRKEFILEDPKTYLFLSNGNLP-VPGVDDAVEFQATVQAMNIMGMTNEDYS-------------------------- 110 (213)
Q Consensus 58 ~~~~~~~l~L~~~~~~~yl~~~~~~-~~~~~d~~~f~~l~~al~~lg~~~~e~~-------------------------- 110 (213)
+++++++|+|.++.+|+||+++++. .++++|+++|+.++.||+.|||+++|+.
T Consensus 198 ~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~ 277 (671)
T cd01381 198 STDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFADIRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLA 277 (671)
T ss_pred CHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCC
Confidence 9999999999999999999998765 7899999999999999999999999987
Q ss_pred -eecCChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q psy2473 111 -ASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTK 189 (213)
Q Consensus 111 -~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~ 189 (213)
+.+.+++.++.||+||||++++|.++|+++++.+++|.+.+|++++||..+||||||+||+|||+|||.+||++|.++.
T Consensus 278 ~~~i~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~ 357 (671)
T cd01381 278 ACEVDDTPNLQRVAQLLGVPIQDLMDALTSRTIFTRGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPV 357 (671)
T ss_pred ceeeCChHHHHHHHHHhCCCHHHHhhhhceEEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4567888999999999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred CcceeeecceeeeeeccCCCccCC
Q psy2473 190 RQVYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 190 ~~~~~~~~d~~GilDifGFE~~~~ 213 (213)
... ..+||||||||||+|++
T Consensus 358 ~~~----~~~IgiLDIfGFE~f~~ 377 (671)
T cd01381 358 QQS----RNSIGVLDIFGFENFDV 377 (671)
T ss_pred ccc----cceEEEEecCCcccCCC
Confidence 221 24789999999999974
No 5
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=2.6e-60 Score=445.46 Aligned_cols=207 Identities=35% Similarity=0.579 Sum_probs=188.1
Q ss_pred ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCC
Q psy2473 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGA 57 (213)
Q Consensus 5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~ 57 (213)
.+|+++|+++||||||||||||++|+||||||| +..| ||||| ||||||||+|+
T Consensus 124 ~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~ 203 (691)
T cd01380 124 TQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQILFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGA 203 (691)
T ss_pred cCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEEEECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCC
Confidence 579999999999999999999999999999999 4444 99999 99999999999
Q ss_pred CHHHHhhcccCCCcccccccCCCCC-CCCCchHHHHHHHHHHHHhcCCCcccee------------------------ee
Q psy2473 58 TPEQRKEFILEDPKTYLFLSNGNLP-VPGVDDAVEFQATVQAMNIMGMTNEDYS------------------------AS 112 (213)
Q Consensus 58 ~~~~~~~l~L~~~~~~~yl~~~~~~-~~~~~d~~~f~~l~~al~~lg~~~~e~~------------------------~~ 112 (213)
++++|++|+|.++..|+||+++++. +++++|.++|+.++.||+.|||+++|+. +.
T Consensus 204 ~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f~~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~~~~~ 283 (691)
T cd01380 204 PSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDFNATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRNDSSS 283 (691)
T ss_pred CHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCccce
Confidence 9999999999999999999998865 7889999999999999999999999987 11
Q ss_pred c-CChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCc
Q psy2473 113 L-PDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 191 (213)
Q Consensus 113 ~-~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~~ 191 (213)
+ .+.+.++.||+||||++++|.++|+++++.+++|.+.+|++++||..+||||||+||++||+|||++||.+|.+....
T Consensus 284 ~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~ 363 (691)
T cd01380 284 ISPKDENLQIACELLGVDASDLRKWLVKRQIVTRSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVK 363 (691)
T ss_pred ecCChHHHHHHHHHhCCCHHHHHHHHHhCEEEECCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 2 345789999999999999999999999999999999999999999999999999999999999999999999987421
Q ss_pred ceeeecceeeeeeccCCCccCC
Q psy2473 192 VYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 192 ~~~~~~d~~GilDifGFE~~~~ 213 (213)
. ....+||||||||||+|++
T Consensus 364 ~--~~~~~IgiLDI~GFE~f~~ 383 (691)
T cd01380 364 K--KQTSFIGVLDIYGFETFEK 383 (691)
T ss_pred C--CccceEEEEecCcccccCC
Confidence 1 1234799999999999974
No 6
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=3.2e-60 Score=443.40 Aligned_cols=205 Identities=34% Similarity=0.516 Sum_probs=189.0
Q ss_pred ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCC
Q psy2473 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGA 57 (213)
Q Consensus 5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~ 57 (213)
+.++++|+++||||||||||||++|+||||||| +..| ||||| ||||||||+|+
T Consensus 123 ~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~ 202 (677)
T cd01383 123 SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGA 202 (677)
T ss_pred CcHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEEEECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCC
Confidence 478999999999999999999999999999999 4444 99999 99999999999
Q ss_pred CHHHHhhcccCCCcccccccCCCCC-CCCCchHHHHHHHHHHHHhcCCCcccee-------------------------e
Q psy2473 58 TPEQRKEFILEDPKTYLFLSNGNLP-VPGVDDAVEFQATVQAMNIMGMTNEDYS-------------------------A 111 (213)
Q Consensus 58 ~~~~~~~l~L~~~~~~~yl~~~~~~-~~~~~d~~~f~~l~~al~~lg~~~~e~~-------------------------~ 111 (213)
++++|++|+|.++..|+||+++++. +++++|+++|+.++.||+.|||+++|+. +
T Consensus 203 ~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~ 282 (677)
T cd01383 203 PPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRFHTLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHV 282 (677)
T ss_pred CHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCccc
Confidence 9999999999999999999998775 7899999999999999999999999977 2
Q ss_pred ecCChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCc
Q psy2473 112 SLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 191 (213)
Q Consensus 112 ~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~~ 191 (213)
.+.+.+.++.||+||||++++|.++|+++++.+++|.+.+|++++||..+||||||+||+|||+|||.+||.+|.+....
T Consensus 283 ~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~ 362 (677)
T cd01383 283 EPVADEALSTAAKLIGCNIEDLMLALSTRKMHVNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRR 362 (677)
T ss_pred ccCChHHHHHHHHHhCCCHHHHHHHhhhcEEEeCCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999986543
Q ss_pred ceeeecceeeeeeccCCCccCC
Q psy2473 192 VYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 192 ~~~~~~d~~GilDifGFE~~~~ 213 (213)
. ..+||||||||||+|++
T Consensus 363 ~----~~~IgiLDI~GFE~f~~ 380 (677)
T cd01383 363 T----GRSISILDIYGFESFDK 380 (677)
T ss_pred c----cceEEEeeccccccCCC
Confidence 1 24799999999999964
No 7
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=5.1e-60 Score=443.26 Aligned_cols=207 Identities=29% Similarity=0.412 Sum_probs=188.8
Q ss_pred ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCC
Q psy2473 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGA 57 (213)
Q Consensus 5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~ 57 (213)
++|+++|++|||||||||||||++|+||||||| +..| ||||| ||||||||+|+
T Consensus 129 ~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~ 208 (692)
T cd01385 129 SGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGA 208 (692)
T ss_pred CcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCC
Confidence 579999999999999999999999999999999 4444 99999 99999999999
Q ss_pred CHHHHhhcccCCCcccccccCCCCC-CCCCchHHHHHHHHHHHHhcCCCcccee--------------------------
Q psy2473 58 TPEQRKEFILEDPKTYLFLSNGNLP-VPGVDDAVEFQATVQAMNIMGMTNEDYS-------------------------- 110 (213)
Q Consensus 58 ~~~~~~~l~L~~~~~~~yl~~~~~~-~~~~~d~~~f~~l~~al~~lg~~~~e~~-------------------------- 110 (213)
++++|++++|.++.+|+||+++++. .++++|.++|..++.||+.|||+++++.
T Consensus 209 ~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f~~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~ 288 (692)
T cd01385 209 SEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEFERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRD 288 (692)
T ss_pred CHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCC
Confidence 9999999999877899999998776 4689999999999999999999999887
Q ss_pred --eecCChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy2473 111 --ASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRT 188 (213)
Q Consensus 111 --~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~ 188 (213)
+.+.+++.+..||+||||++++|.++|+++++.++||.+++|++++||..+||+|||+||++||+|||++||++|.+.
T Consensus 289 ~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~ 368 (692)
T cd01385 289 ESLEVGNPEVVDLLSQLLKVKRETLMEALTKKRTVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNK 368 (692)
T ss_pred CceecCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 245678899999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cCcceeeecceeeeeeccCCCccCC
Q psy2473 189 KRQVYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 189 ~~~~~~~~~d~~GilDifGFE~~~~ 213 (213)
.... ....+||||||||||+|++
T Consensus 369 ~~~~--~~~~~IgiLDI~GFE~f~~ 391 (692)
T cd01385 369 DDVA--VSGLSIGVLDIFGFEDFGR 391 (692)
T ss_pred cccc--ccceEEEEEecCccccCCC
Confidence 5431 1123799999999999964
No 8
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=1.5e-59 Score=439.26 Aligned_cols=203 Identities=32% Similarity=0.475 Sum_probs=186.8
Q ss_pred ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------C---CCC--------Cccch---------hHHHHHHhcCCC
Q psy2473 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------H---QSK--------GKSSS---------WKTLTVSSSGAT 58 (213)
Q Consensus 5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~---~~G--------EksRv---------fhiFYqll~g~~ 58 (213)
..|+++|+++||||||||||||++|+||||||| + ..| ||||| ||||||||+|++
T Consensus 120 ~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f~~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~ 199 (677)
T cd01387 120 AVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLEGGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLP 199 (677)
T ss_pred chHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEecCCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCC
Confidence 358999999999999999999999999999999 1 223 99999 999999999999
Q ss_pred HHHHhhcccCCCcccccccCCCCC-CCCCchHHHHHHHHHHHHhcCCCcccee---------------------------
Q psy2473 59 PEQRKEFILEDPKTYLFLSNGNLP-VPGVDDAVEFQATVQAMNIMGMTNEDYS--------------------------- 110 (213)
Q Consensus 59 ~~~~~~l~L~~~~~~~yl~~~~~~-~~~~~d~~~f~~l~~al~~lg~~~~e~~--------------------------- 110 (213)
+++|++|+|.++..|+||+++.+. +++.+|+++|+.++.||+.|||+++|+.
T Consensus 200 ~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~ 279 (677)
T cd01387 200 AQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFRRLLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEV 279 (677)
T ss_pred HHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcc
Confidence 999999999999999999998765 6788999999999999999999999987
Q ss_pred eecCChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC
Q psy2473 111 ASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKR 190 (213)
Q Consensus 111 ~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~ 190 (213)
+.+.+++.++.||+||||++++|.++|+.+++.+++|.+.+|++++||..+||||||+||+|||+|||++||.+|.+..+
T Consensus 280 ~~~~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~ 359 (677)
T cd01387 280 ASVVSAREIQAVAELLQISPEGLQKAITFKVTETRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPTQD 359 (677)
T ss_pred cccCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 24567778999999999999999999999999999999999999999999999999999999999999999999987433
Q ss_pred cceeeecceeeeeeccCCCccCC
Q psy2473 191 QVYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 191 ~~~~~~~d~~GilDifGFE~~~~ 213 (213)
. .+||||||||||+|++
T Consensus 360 ~------~~IgILDIfGFE~f~~ 376 (677)
T cd01387 360 T------LSIAILDIYGFEDLSF 376 (677)
T ss_pred C------ceEEEEecCccccCCC
Confidence 2 3789999999999964
No 9
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=2.5e-59 Score=437.85 Aligned_cols=205 Identities=33% Similarity=0.541 Sum_probs=189.4
Q ss_pred ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCC
Q psy2473 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGA 57 (213)
Q Consensus 5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~ 57 (213)
..++++|+++||||||||||||++|+||||||| +..| ||||| ||||||||+|+
T Consensus 121 ~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~ 200 (674)
T cd01378 121 ERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFDFKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGA 200 (674)
T ss_pred ccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEECCCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCC
Confidence 469999999999999999999999999999999 4344 99999 99999999999
Q ss_pred CHHHHhhcccCCCcccccccCCCC-CCCCCchHHHHHHHHHHHHhcCCCcccee------------------------ee
Q psy2473 58 TPEQRKEFILEDPKTYLFLSNGNL-PVPGVDDAVEFQATVQAMNIMGMTNEDYS------------------------AS 112 (213)
Q Consensus 58 ~~~~~~~l~L~~~~~~~yl~~~~~-~~~~~~d~~~f~~l~~al~~lg~~~~e~~------------------------~~ 112 (213)
++++|++|+|.++..|+||+++++ .+++++|+++|++++.||+.|||+++|+. +.
T Consensus 201 ~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~~~~~ 280 (674)
T cd01378 201 SEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKETQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGDGAAV 280 (674)
T ss_pred CHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCCCccc
Confidence 999999999999999999999987 48899999999999999999999999987 35
Q ss_pred cCChHHHHHHHHHhCCCHHHHHhhhhcceEeeCc----eeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy2473 113 LPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGR----DFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRT 188 (213)
Q Consensus 113 ~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~----e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~ 188 (213)
+.+.+.++.||+||||++++|.++|+++++.+++ |.+++|++++||..+||||||+||++||+|||.+||++|.+.
T Consensus 281 ~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~ 360 (674)
T cd01378 281 ISDKDVLDFAAYLLGVDPSELEKALTSRTIETGGGGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVK 360 (674)
T ss_pred cCChHHHHHHHHHcCCCHHHHHHHhcccEEEeCCCCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7788999999999999999999999999999998 999999999999999999999999999999999999999986
Q ss_pred cCcceeeecceeeeeeccCCCccCC
Q psy2473 189 KRQVYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 189 ~~~~~~~~~d~~GilDifGFE~~~~ 213 (213)
.... ..+||||||||||+|++
T Consensus 361 ~~~~----~~~IgILDIfGFE~f~~ 381 (674)
T cd01378 361 SPGK----NKVIGVLDIYGFEIFQK 381 (674)
T ss_pred cccC----cceEEEEeccccccccc
Confidence 3321 24789999999999964
No 10
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=3.7e-59 Score=434.76 Aligned_cols=209 Identities=29% Similarity=0.421 Sum_probs=185.9
Q ss_pred ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCC
Q psy2473 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGA 57 (213)
Q Consensus 5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~ 57 (213)
.+|+++|+++||||||||||||++|+||||||| +..| ||||| ||||||||+|+
T Consensus 119 ~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~ 198 (653)
T cd01379 119 RTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGL 198 (653)
T ss_pred ccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEECCCCcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCC
Confidence 479999999999999999999999999999999 4444 99999 99999999999
Q ss_pred CHHHH-hhcccCCCcccccccCCCCC-CCCC----chHHHHHHHHHHHHhcCCCcccee---------------------
Q psy2473 58 TPEQR-KEFILEDPKTYLFLSNGNLP-VPGV----DDAVEFQATVQAMNIMGMTNEDYS--------------------- 110 (213)
Q Consensus 58 ~~~~~-~~l~L~~~~~~~yl~~~~~~-~~~~----~d~~~f~~l~~al~~lg~~~~e~~--------------------- 110 (213)
+++++ ++|+|.++..|+||+++.+. ++++ +|.++|+.++.||+.|||+++|+.
T Consensus 199 ~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~ 278 (653)
T cd01379 199 AEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYKDQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVA 278 (653)
T ss_pred CHHHHHHhcCCCCccccCccCCCCccccCCCccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecc
Confidence 98776 78999988999999988764 4444 357899999999999999999987
Q ss_pred -------eecCChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2473 111 -------ASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINR 183 (213)
Q Consensus 111 -------~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~ 183 (213)
+.+.+++.++.+|+||||++++|.++|+++++.++|+.+++|++++||..+||||||+||+|||+|||.+||.
T Consensus 279 ~~~~~~~~~i~~~~~l~~~A~LLgv~~~~L~~~L~~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~ 358 (653)
T cd01379 279 SEHQTDKSRVSNVAALENAASLLCIRSDELQEALTSHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINS 358 (653)
T ss_pred ccCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2356788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcceeeecceeeeeeccCCCccCC
Q psy2473 184 SLDRTKRQVYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 184 ~l~~~~~~~~~~~~d~~GilDifGFE~~~~ 213 (213)
+|.+...........+||||||||||+|++
T Consensus 359 ~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~ 388 (653)
T cd01379 359 LLKHDRNASNSSDQLNVGILDIFGFENFKK 388 (653)
T ss_pred HhccccccccccccceEEEEeccccccCCC
Confidence 999865532222334799999999999964
No 11
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=4.9e-59 Score=435.24 Aligned_cols=203 Identities=33% Similarity=0.540 Sum_probs=185.4
Q ss_pred ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCC
Q psy2473 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGA 57 (213)
Q Consensus 5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~ 57 (213)
.+|+++|+++||||||||||||++|+||||||| +..| ||||| |||||||++|
T Consensus 124 ~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g- 202 (674)
T cd01384 124 RTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAA- 202 (674)
T ss_pred ccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEEEECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcC-
Confidence 469999999999999999999999999999999 4444 99999 9999999999
Q ss_pred CHHHHhhcccCCCcccccccCCCCC-CCCCchHHHHHHHHHHHHhcCCCcccee-------------------------e
Q psy2473 58 TPEQRKEFILEDPKTYLFLSNGNLP-VPGVDDAVEFQATVQAMNIMGMTNEDYS-------------------------A 111 (213)
Q Consensus 58 ~~~~~~~l~L~~~~~~~yl~~~~~~-~~~~~d~~~f~~l~~al~~lg~~~~e~~-------------------------~ 111 (213)
+++++++|+|.++..|+||+++++. .++++|+++|++++.||+.|||+++|+. +
T Consensus 203 ~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~ 282 (674)
T cd01384 203 PPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLATRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSS 282 (674)
T ss_pred CHHHHHHcCCCChHhCccccCCCCccccccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcc
Confidence 8899999999999999999998765 7889999999999999999999999887 1
Q ss_pred ecC---ChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy2473 112 SLP---DNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRT 188 (213)
Q Consensus 112 ~~~---~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~ 188 (213)
.+. +.+.++.||+||||++++|.++|+++++.+++|.+++|++++||..+||||||+||++||+|||.+||.++.+.
T Consensus 283 ~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~ 362 (674)
T cd01384 283 VLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPEEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQD 362 (674)
T ss_pred cccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 122 24789999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCcceeeecceeeeeeccCCCccCC
Q psy2473 189 KRQVYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 189 ~~~~~~~~~d~~GilDifGFE~~~~ 213 (213)
... ..+||||||||||+|++
T Consensus 363 ~~~-----~~~IgiLDI~GFE~f~~ 382 (674)
T cd01384 363 PDS-----KSLIGVLDIYGFESFKT 382 (674)
T ss_pred CCC-----CeEEEEEecccccccCc
Confidence 432 24789999999999964
No 12
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=2.8e-58 Score=432.91 Aligned_cols=203 Identities=27% Similarity=0.426 Sum_probs=182.8
Q ss_pred ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCC
Q psy2473 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGA 57 (213)
Q Consensus 5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~ 57 (213)
.+|+++|++|||||||||||||++|+||||||| +..| ||||| ||||||||+|+
T Consensus 123 ~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~ 202 (717)
T cd01382 123 QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGA 202 (717)
T ss_pred ccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEEEEECCCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCC
Confidence 579999999999999999999999999999999 4444 99999 99999999999
Q ss_pred CHHHHhhcccCCCcccccccCCCC---------------------------CCCCCchHHHHHHHHHHHHhcCCCcccee
Q psy2473 58 TPEQRKEFILEDPKTYLFLSNGNL---------------------------PVPGVDDAVEFQATVQAMNIMGMTNEDYS 110 (213)
Q Consensus 58 ~~~~~~~l~L~~~~~~~yl~~~~~---------------------------~~~~~~d~~~f~~l~~al~~lg~~~~e~~ 110 (213)
++++|++|+|.++..|+||++++. ..++++|.++|+.++.||+.|||+++|+.
T Consensus 203 ~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~ 282 (717)
T cd01382 203 SEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQILQNRKSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKL 282 (717)
T ss_pred CHHHHHHhcCCChhhCeeecCCcccccccccccccccccccccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHH
Confidence 999999999999999999997632 13567999999999999999999999987
Q ss_pred --------------------------ee--cCChHHHHHHHHHhCCCHHHHHhhhhcceEe-----eCceeEeecCCHHH
Q psy2473 111 --------------------------AS--LPDNTVAQKIAKLLGLSITEMTKAFLKPRIK-----VGRDFVTKSQTKEQ 157 (213)
Q Consensus 111 --------------------------~~--~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~-----~~~e~v~~~~~~~~ 157 (213)
+. ..+.+.++.||+||||++++|.++|+++.+. ++++.+.+|++++|
T Consensus 283 ~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~q 362 (717)
T cd01382 283 DLFRVVAGVLHLGNIDFEEAGSTSGGCNVKNQSEQSLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQ 362 (717)
T ss_pred HHHHHHHHHHhcCceeEeccCCCCCcceecCCCHHHHHHHHHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHH
Confidence 11 2356889999999999999999999999988 78999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCcceeeecceeeeeeccCCCccCC
Q psy2473 158 VEFAVEAISKACYERMFRWLVNRINRSLDRTKRQVYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 158 A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~~~~~~~~d~~GilDifGFE~~~~ 213 (213)
|..+||+|||+||++||+|||++||.++.+.... .+||||||||||+|++
T Consensus 363 A~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~------~~IgiLDIfGFE~f~~ 412 (717)
T cd01382 363 ANNARDALAKAVYSHLFDHVVSRVNQCFPFETSS------NFIGVLDIAGFEYFEH 412 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC------cEEEEEeccccccCCC
Confidence 9999999999999999999999999999764332 3789999999999974
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=3.3e-58 Score=431.36 Aligned_cols=205 Identities=39% Similarity=0.604 Sum_probs=188.8
Q ss_pred cccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcC
Q psy2473 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSG 56 (213)
Q Consensus 4 ~~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g 56 (213)
..+|+++|+++||||||||||||++|+||||||| +..| ||||| ||||||||+|
T Consensus 126 ~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g 205 (677)
T smart00242 126 VGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFIEIHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAG 205 (677)
T ss_pred cccHHHHHHHHHHHHHHhhccccCCCCCccchheeEEEEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcC
Confidence 4579999999999999999999999999999999 4444 99999 9999999999
Q ss_pred CCHHHHhhcccCCCcccccccCCCCC-CCCCchHHHHHHHHHHHHhcCCCcccee-------------------------
Q psy2473 57 ATPEQRKEFILEDPKTYLFLSNGNLP-VPGVDDAVEFQATVQAMNIMGMTNEDYS------------------------- 110 (213)
Q Consensus 57 ~~~~~~~~l~L~~~~~~~yl~~~~~~-~~~~~d~~~f~~l~~al~~lg~~~~e~~------------------------- 110 (213)
++++++++|+|.++..|+||+++++. .++++|+++|++++.||+.|||+++|+.
T Consensus 206 ~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~ 285 (677)
T smart00242 206 ASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEEFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNA 285 (677)
T ss_pred CCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCc
Confidence 99999999999999999999998654 7889999999999999999999999987
Q ss_pred -eecCChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q psy2473 111 -ASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTK 189 (213)
Q Consensus 111 -~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~ 189 (213)
..+.+.+.++.||+||||++++|.++|+++++.+++|.+++|+++++|..+||+|||+||+|||+|||.+||++|.+..
T Consensus 286 ~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~ 365 (677)
T smart00242 286 ASTVKDKEELENAAELLGVDPEELEKALTKRKIKTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKD 365 (677)
T ss_pred ccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1256888999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred CcceeeecceeeeeeccCCCccCC
Q psy2473 190 RQVYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 190 ~~~~~~~~d~~GilDifGFE~~~~ 213 (213)
.. ..+||||||||||+|++
T Consensus 366 ~~-----~~~IgiLDifGFE~f~~ 384 (677)
T smart00242 366 GS-----TYFIGVLDIYGFEIFEV 384 (677)
T ss_pred CC-----ceEEEEEeccccccccc
Confidence 22 34789999999999863
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=5.1e-58 Score=430.68 Aligned_cols=204 Identities=39% Similarity=0.598 Sum_probs=188.8
Q ss_pred ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCC
Q psy2473 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGA 57 (213)
Q Consensus 5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~ 57 (213)
..++++|++|||||||||||||++|+||||||| +..| ||||| ||||||||+|+
T Consensus 119 ~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~ 198 (679)
T cd00124 119 TGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDETGKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGA 198 (679)
T ss_pred chHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEEECCCCcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCC
Confidence 469999999999999999999999999999999 4433 99999 99999999999
Q ss_pred CHHHHhhcccCCCcccccccCCCCC-CCCCchHHHHHHHHHHHHhcCCCcccee--------------------------
Q psy2473 58 TPEQRKEFILEDPKTYLFLSNGNLP-VPGVDDAVEFQATVQAMNIMGMTNEDYS-------------------------- 110 (213)
Q Consensus 58 ~~~~~~~l~L~~~~~~~yl~~~~~~-~~~~~d~~~f~~l~~al~~lg~~~~e~~-------------------------- 110 (213)
+++++++|+|.++..|+||+++.+. .++++|.++|++++.||+.|||+++|+.
T Consensus 199 ~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~ 278 (679)
T cd00124 199 SPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEELKEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQE 278 (679)
T ss_pred CHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcc
Confidence 9999999999999999999998876 5889999999999999999999999987
Q ss_pred -eecCChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q psy2473 111 -ASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTK 189 (213)
Q Consensus 111 -~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~ 189 (213)
+.+.+++.++.+|+||||++++|.++|+++++.+++|.+++|+++++|..+||+|||+||++||+|||.+||.+|.+..
T Consensus 279 ~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~ 358 (679)
T cd00124 279 AAEVKNTEVLSKAAELLGLDPEELEEALTYKVTKVGGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKD 358 (679)
T ss_pred eeecCCHHHHHHHHHHhCCCHHHHHHHhhccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2366778999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CcceeeecceeeeeeccCCCccCC
Q psy2473 190 RQVYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 190 ~~~~~~~~d~~GilDifGFE~~~~ 213 (213)
.. ..+||||||||||+|++
T Consensus 359 ~~-----~~~IgiLDi~GFE~f~~ 377 (679)
T cd00124 359 GR-----SLFIGILDIFGFEIFEK 377 (679)
T ss_pred CC-----CceeeEEeccccccCCC
Confidence 32 24789999999999863
No 15
>KOG0164|consensus
Probab=100.00 E-value=1.4e-57 Score=411.04 Aligned_cols=207 Identities=32% Similarity=0.517 Sum_probs=187.9
Q ss_pred ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc----------CCCC--------Cccch---------hHHHHHHhcCC
Q psy2473 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL----------HQSK--------GKSSS---------WKTLTVSSSGA 57 (213)
Q Consensus 5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk----------~~~G--------EksRv---------fhiFYqll~g~ 57 (213)
+.+.+++++|||||||||||||.+|+||||||| ++.| ||||| ||||||||.|.
T Consensus 131 erVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMDInFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~ 210 (1001)
T KOG0164|consen 131 ERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMDINFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGG 210 (1001)
T ss_pred HHHHHHHHhcchHHHHhcccccccCCchhhhhcceeeeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCC
Confidence 567899999999999999999999999999999 3344 99999 99999999999
Q ss_pred CHHHHhhcccC-CCcccccccCCCCCCCCCchHHHHHHHHHHHHhcCCCcccee-----------------------eec
Q psy2473 58 TPEQRKEFILE-DPKTYLFLSNGNLPVPGVDDAVEFQATVQAMNIMGMTNEDYS-----------------------ASL 113 (213)
Q Consensus 58 ~~~~~~~l~L~-~~~~~~yl~~~~~~~~~~~d~~~f~~l~~al~~lg~~~~e~~-----------------------~~~ 113 (213)
++++..+|+|. ++..|.||+++...+.+++|+.+|+.++.||.++||+++|+. .-+
T Consensus 211 ~e~~Lr~l~Ler~~~~Y~ylnqg~~~v~sinD~~dfk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~ed~~~~ 290 (1001)
T KOG0164|consen 211 EEQLLRQLGLERNPQSYNYLNQGSAKVSSINDASDFKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNEDSSGI 290 (1001)
T ss_pred cHHHHHHhccccCcchhhhhhhhhhhhcccccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecCccccc
Confidence 99999999997 999999999997778999999999999999999999999998 112
Q ss_pred CChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCcc-
Q psy2473 114 PDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQV- 192 (213)
Q Consensus 114 ~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~~~- 192 (213)
.+...++.+|+||++.+++|.++|+.|++..++|.+.+++++.||..+||||||++|+|||.|||++||.++.......
T Consensus 291 ~~~~~l~~~aell~v~~del~~aL~~Rtvaa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~ 370 (1001)
T KOG0164|consen 291 VNGAQLKYIAELLSVTGDELERALTSRTVAAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITL 370 (1001)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeccccccc
Confidence 3447899999999999999999999999999999999999999999999999999999999999999999999875542
Q ss_pred eeeecceeeeeeccCCCccC
Q psy2473 193 YFKLINRYGIILCFLFQSIV 212 (213)
Q Consensus 193 ~~~~~d~~GilDifGFE~~~ 212 (213)
..+ ...+|+|||||||.|.
T Consensus 371 ~~~-~~Vigvldiygfeif~ 389 (1001)
T KOG0164|consen 371 RKG-NTVIGVLDIYGFEIFQ 389 (1001)
T ss_pred ccC-ceEEEEEEeeeEEeec
Confidence 222 3478999999999874
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=9.2e-57 Score=424.15 Aligned_cols=205 Identities=40% Similarity=0.613 Sum_probs=176.9
Q ss_pred cccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcC
Q psy2473 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSG 56 (213)
Q Consensus 4 ~~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g 56 (213)
..+++++|++++|||||||||||.+|+||||||| +..| ||||| ||||||||+|
T Consensus 121 ~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G 200 (689)
T PF00063_consen 121 SSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQFDDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAG 200 (689)
T ss_dssp TTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHT
T ss_pred cccccceEEeccchhhhhcccccccCCcccccceEEEEEecccccccccceecccccccceeeccccccccchhhhhhhc
Confidence 3579999999999999999999999999999999 4444 99999 9999999999
Q ss_pred CCHHHHhhcccCCCcccccccCCCCC-CCCCchHHHHHHHHHHHHhcCCCcccee-------------------------
Q psy2473 57 ATPEQRKEFILEDPKTYLFLSNGNLP-VPGVDDAVEFQATVQAMNIMGMTNEDYS------------------------- 110 (213)
Q Consensus 57 ~~~~~~~~l~L~~~~~~~yl~~~~~~-~~~~~d~~~f~~l~~al~~lg~~~~e~~------------------------- 110 (213)
++++++++|+|.++.+|+||+++++. .++.+|.++|+.++.||+.|||+++|+.
T Consensus 201 ~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~l~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~ 280 (689)
T PF00063_consen 201 ADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQELKDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDES 280 (689)
T ss_dssp SSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSS
T ss_pred cchhhhhcccccccccccceecccccccCCccCHHHhhhhhhhhccccCchhHHHHHHHHHHHHhhhccccccccccccc
Confidence 99999999999999999999997654 7888999999999999999999999987
Q ss_pred eecCChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC
Q psy2473 111 ASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKR 190 (213)
Q Consensus 111 ~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~ 190 (213)
+.+.+++.++.||+||||++++|.++|+++++.+++|.+++|++++||..+||+|||+||++||+|||.+||.+|++...
T Consensus 281 ~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~ 360 (689)
T PF00063_consen 281 AEVENSEELQKAAELLGVDSEELEKALTTRTIKVGGETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSES 360 (689)
T ss_dssp EEESTSHHHHHHHHHTTS-HHHHHHHHHSEEEESTTSEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-
T ss_pred eeechHHHHHHhhhhcCCCHHHHHHHHhhccccccccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccc
Confidence 46778888999999999999999999999999999999999999999999999999999999999999999999998773
Q ss_pred cceeeecceeeeeeccCCCccC
Q psy2473 191 QVYFKLINRYGIILCFLFQSIV 212 (213)
Q Consensus 191 ~~~~~~~d~~GilDifGFE~~~ 212 (213)
. ...+||||||||||+|.
T Consensus 361 ~----~~~~IgILDi~GFE~~~ 378 (689)
T PF00063_consen 361 E----NSSSIGILDIFGFENFS 378 (689)
T ss_dssp S-----SEEEEEEEEE-B---S
T ss_pred c----ccccCcccCcccccccc
Confidence 2 23478999999999985
No 17
>KOG0162|consensus
Probab=100.00 E-value=7.4e-56 Score=400.43 Aligned_cols=206 Identities=32% Similarity=0.541 Sum_probs=190.1
Q ss_pred cccHHHHHhhhhHHHHHhcCcccCCCCCCccccc----------CCCC--------Cccch---------hHHHHHHhcC
Q psy2473 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRFVL----------HQSK--------GKSSS---------WKTLTVSSSG 56 (213)
Q Consensus 4 ~~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk----------~~~G--------EksRv---------fhiFYqll~g 56 (213)
.+.|.+-|+++||+|||||||||++|+||||||| ...| ||||| |||||||+.|
T Consensus 138 vq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~Ei~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kg 217 (1106)
T KOG0162|consen 138 VQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLEIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKG 217 (1106)
T ss_pred hhhhhhHhhccchHHHHhcchhhhccCCcccccceEEEEecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcC
Confidence 4578899999999999999999999999999999 2233 99999 9999999999
Q ss_pred CCHHHHhhcccCCCcccccccCCCCC-CCCCchHHHHHHHHHHHHhcCCCcccee-----------------------ee
Q psy2473 57 ATPEQRKEFILEDPKTYLFLSNGNLP-VPGVDDAVEFQATVQAMNIMGMTNEDYS-----------------------AS 112 (213)
Q Consensus 57 ~~~~~~~~l~L~~~~~~~yl~~~~~~-~~~~~d~~~f~~l~~al~~lg~~~~e~~-----------------------~~ 112 (213)
++.+.|..+++..++.|.|++.++|. +++++|..+|+.++.||+++|+.++|+. +.
T Consensus 218 As~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kdfq~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee~~~a~ 297 (1106)
T KOG0162|consen 218 ASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKDFQETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEEGNYAA 297 (1106)
T ss_pred ccHHHHhhhCcCCchheeeeccccceeccccchHHHHHHHHHHheeccCChHHHHHHHHHHHHHHhccceeEEeeCCcce
Confidence 99999999999999999999999987 8999999999999999999999999998 67
Q ss_pred cCChHHHHHHHHHhCCCHHHHHhhhhcceEee----CceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy2473 113 LPDNTVAQKIAKLLGLSITEMTKAFLKPRIKV----GRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRT 188 (213)
Q Consensus 113 ~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~----~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~ 188 (213)
|.+.+.++-.|.||||+...|.++|+.|.+.. +.|.+.+|++++||...||||||+||.|||+|||++||.++...
T Consensus 298 V~~~~~~~f~ayLlgi~s~~l~~~Lt~R~M~s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~ 377 (1106)
T KOG0162|consen 298 VSDKSVLEFPAYLLGIDSARLEEKLTSRIMESKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAF 377 (1106)
T ss_pred eccchHHHhHHHHhcCCHHHHHHHHHHHHHhhcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88899999999999999999999999998875 35899999999999999999999999999999999999999976
Q ss_pred cCcceeeecceeeeeeccCCCccCC
Q psy2473 189 KRQVYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 189 ~~~~~~~~~d~~GilDifGFE~~~~ 213 (213)
+.+.+ .+||||||+|||.|++
T Consensus 378 ~~~~~----~sIGiLDIYGFEIFe~ 398 (1106)
T KOG0162|consen 378 KGSEE----YSIGILDIYGFEIFEN 398 (1106)
T ss_pred CCccc----cceeeEEeeeeeeccc
Confidence 55432 2689999999999975
No 18
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=7e-55 Score=411.33 Aligned_cols=200 Identities=26% Similarity=0.343 Sum_probs=170.8
Q ss_pred HHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCCCHH
Q psy2473 8 EQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGATPE 60 (213)
Q Consensus 8 ~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~~~~ 60 (213)
.++|+++||||||||||||++|+||||||| +..| ||||| ||||||||+|++++
T Consensus 123 ~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~ 202 (767)
T cd01386 123 VEKVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQTGQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGD 202 (767)
T ss_pred HHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEECCCCcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHH
Confidence 468999999999999999999999999999 4444 99999 99999999999999
Q ss_pred HHhhcccCCCcccccccCCC--CCCCCCchHHHHHHHHHHHHhcCCCcccee-----------------------eecCC
Q psy2473 61 QRKEFILEDPKTYLFLSNGN--LPVPGVDDAVEFQATVQAMNIMGMTNEDYS-----------------------ASLPD 115 (213)
Q Consensus 61 ~~~~l~L~~~~~~~yl~~~~--~~~~~~~d~~~f~~l~~al~~lg~~~~e~~-----------------------~~~~~ 115 (213)
++++|+|.+...+.+..... .+.++++|+++|+.++.||++|||+++|+. +.+.+
T Consensus 203 ~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~~~~~~~~~ 282 (767)
T cd01386 203 LRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSRLQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATKVAGRKQFAR 282 (767)
T ss_pred HHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecCCccccCC
Confidence 99999998654433322222 235678999999999999999999999987 24567
Q ss_pred hHHHHHHHHHhCCCHHHHHhhhhcceEeeCcee-------------EeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2473 116 NTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDF-------------VTKSQTKEQVEFAVEAISKACYERMFRWLVNRIN 182 (213)
Q Consensus 116 ~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~-------------v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN 182 (213)
++.++.+|+||||++++|.++|+++++..+++. +..+.++.+|.++||||||+||+|||+|||++||
T Consensus 283 ~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN 362 (767)
T cd01386 283 PEWAQKAAELLGCPLEELSSATFKHTLRGGINQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLIN 362 (767)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhcccEEeecceeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999887666443 3346788999999999999999999999999999
Q ss_pred hhcccccCcceeeecceeeeeeccCCCccC
Q psy2473 183 RSLDRTKRQVYFKLINRYGIILCFLFQSIV 212 (213)
Q Consensus 183 ~~l~~~~~~~~~~~~d~~GilDifGFE~~~ 212 (213)
.+|.+.... ..+||||||||||+|+
T Consensus 363 ~~l~~~~~~-----~~~IgiLDIfGFE~f~ 387 (767)
T cd01386 363 RSISSSHHS-----IASIMLVDTPGFQNPA 387 (767)
T ss_pred HHhCCCCCC-----CcEEEEEecccccccc
Confidence 999986543 2368999999999996
No 19
>KOG0163|consensus
Probab=100.00 E-value=4.1e-52 Score=377.11 Aligned_cols=204 Identities=30% Similarity=0.483 Sum_probs=180.9
Q ss_pred cccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CC----CC--------Cccch---------hHHHHHHhcC
Q psy2473 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQ----SK--------GKSSS---------WKTLTVSSSG 56 (213)
Q Consensus 4 ~~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~----~G--------EksRv---------fhiFYqll~g 56 (213)
.++|+++|+.+||||||||||||++|+||||||| +. .| ||||| |||||||+||
T Consensus 175 ag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC~Qaa~ERNYHiFY~LiAG 254 (1259)
T KOG0163|consen 175 AGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRICRQAAEERNYHIFYQLIAG 254 (1259)
T ss_pred CCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHHHhhhcccchhHHHHHHcC
Confidence 4689999999999999999999999999999999 22 23 99999 9999999999
Q ss_pred CCHHHHhhcccCCCcccccccCCCCC---------------------------CCCCchHHHHHHHHHHHHhcCCCccce
Q psy2473 57 ATPEQRKEFILEDPKTYLFLSNGNLP---------------------------VPGVDDAVEFQATVQAMNIMGMTNEDY 109 (213)
Q Consensus 57 ~~~~~~~~l~L~~~~~~~yl~~~~~~---------------------------~~~~~d~~~f~~l~~al~~lg~~~~e~ 109 (213)
++++++++|.|..|++|+||+.|+.. .+.+||..+|+.+..||..+|++++|.
T Consensus 255 as~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~dF~rl~~Al~~~Glsd~Ek 334 (1259)
T KOG0163|consen 255 ASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQDFHRLEKALKLLGLSDTEK 334 (1259)
T ss_pred CCHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcccccCccccccCcccCcccccHHHHHHHHHHHHhcCCChHHH
Confidence 99999999999999999999976410 123688999999999999999999998
Q ss_pred e---------------------------eec--CChHHHHHHHHHhCCCHHHHHhhhhcceEee-----CceeEeecCCH
Q psy2473 110 S---------------------------ASL--PDNTVAQKIAKLLGLSITEMTKAFLKPRIKV-----GRDFVTKSQTK 155 (213)
Q Consensus 110 ~---------------------------~~~--~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~-----~~e~v~~~~~~ 155 (213)
. |.+ .+..++..+|+|||+++++|.-.|+.|.+.+ +|..+.+|+.+
T Consensus 335 l~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~seqsL~~~a~LLGld~~elr~~L~aRvMqtt~GG~kGTvIrVPLK~ 414 (1259)
T KOG0163|consen 335 LFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNGSEQSLTIAAELLGLDQTELRTGLCARVMQTTKGGFKGTVIRVPLKI 414 (1259)
T ss_pred HHHHHHHHHHHHccccchhcccCcCCCceecccCchhhHHHHHHHhCCCHHHHHHHHHHHHHHhccCCccceEEEeeccH
Confidence 7 333 3567899999999999999999999998774 47889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCcceeeecceeeeeeccCCCccCC
Q psy2473 156 EQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQVYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 156 ~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~~~~~~~~d~~GilDifGFE~~~~ 213 (213)
++|..+||||||++|++||+|||.+||+++.-..+. .+||+|||-|||-|++
T Consensus 415 ~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe~St------~fiGVLDiAGFEyf~~ 466 (1259)
T KOG0163|consen 415 HEASNARDALAKAIYSKLFDWLVGRINQSIPFEKST------FFIGVLDIAGFEYFAV 466 (1259)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHhhccccccccc------ceeEEEeeccceeeec
Confidence 999999999999999999999999999998755443 3789999999998763
No 20
>KOG0161|consensus
Probab=100.00 E-value=6.9e-49 Score=389.93 Aligned_cols=204 Identities=50% Similarity=0.764 Sum_probs=191.6
Q ss_pred ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCC
Q psy2473 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGA 57 (213)
Q Consensus 5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~ 57 (213)
+.++++|+++||||||||||+|++|+||||||| +..| ||||| ||||||++.|.
T Consensus 207 ~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLLEKsRv~~Q~~~Er~yhiFyqlls~~ 286 (1930)
T KOG0161|consen 207 GTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLLEKSRVIRQAPGERNYHIFYQLLSGA 286 (1930)
T ss_pred CChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHHHHhHhhccCcchhHHHHHHHHHhCC
Confidence 589999999999999999999999999999999 5555 99999 99999999999
Q ss_pred CHHHHhhcccC-CCcccccccCCCCCCCCCchHHHHHHHHHHHHhcCCCcccee-------------------------e
Q psy2473 58 TPEQRKEFILE-DPKTYLFLSNGNLPVPGVDDAVEFQATVQAMNIMGMTNEDYS-------------------------A 111 (213)
Q Consensus 58 ~~~~~~~l~L~-~~~~~~yl~~~~~~~~~~~d~~~f~~l~~al~~lg~~~~e~~-------------------------~ 111 (213)
++.++..|.|+ ++.+|.|++++..++++++|+++|+.+..||+++||+++|+. +
T Consensus 287 ~~~l~~~l~L~~~~~~Y~f~~~~~~~i~g~dd~eef~~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa 366 (1930)
T KOG0161|consen 287 DPELKEELLLSDNVKDYKFLSNGESTIPGVDDAEEFQETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQA 366 (1930)
T ss_pred CHHHHHHHhhcccchhhhhhccccCCCCCcchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhcccccccc
Confidence 99999999998 689999999999999999999999999999999999999998 5
Q ss_pred ecCChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCc
Q psy2473 112 SLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 191 (213)
Q Consensus 112 ~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~~ 191 (213)
.+++.+.++.+|.|||++.++|.++++++++.++++.|.+..+.+|+..+..||||++|.|+|.|+|.+||.+|....+.
T Consensus 367 ~~~~~~~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~~~~~ 446 (1930)
T KOG0161|consen 367 EFDNTEVADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVEALAKALYERLFGWLVKRINKSLDSKQQR 446 (1930)
T ss_pred CCCCchHHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999987222
Q ss_pred ceeeecceeeeeeccCCCccCC
Q psy2473 192 VYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 192 ~~~~~~d~~GilDifGFE~~~~ 213 (213)
..+||||||.|||.|++
T Consensus 447 -----~~fIgvLDiaGFEIfe~ 463 (1930)
T KOG0161|consen 447 -----DYFIGVLDIAGFEIFEF 463 (1930)
T ss_pred -----CCcceeeeeccccccCc
Confidence 34789999999998874
No 21
>KOG0160|consensus
Probab=100.00 E-value=1.2e-47 Score=359.14 Aligned_cols=205 Identities=32% Similarity=0.452 Sum_probs=186.9
Q ss_pred cccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------C----CCC--------Cccch---------hHHHHHHhcC
Q psy2473 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------H----QSK--------GKSSS---------WKTLTVSSSG 56 (213)
Q Consensus 4 ~~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~----~~G--------EksRv---------fhiFYqll~g 56 (213)
...||++++++|||+||||||+|.+|+||||||| + .+| ||||| ||||||+++|
T Consensus 127 ~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~iei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~ 206 (862)
T KOG0160|consen 127 GRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVIEITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAG 206 (862)
T ss_pred hhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHHHHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcC
Confidence 3589999999999999999999999999999999 2 344 99999 9999999999
Q ss_pred CCHHHHhhcccCCCcccccccCCCCC-CCCCchHHHHHHHHHHHHhcCCCcccee------------------------e
Q psy2473 57 ATPEQRKEFILEDPKTYLFLSNGNLP-VPGVDDAVEFQATVQAMNIMGMTNEDYS------------------------A 111 (213)
Q Consensus 57 ~~~~~~~~l~L~~~~~~~yl~~~~~~-~~~~~d~~~f~~l~~al~~lg~~~~e~~------------------------~ 111 (213)
.+ +++++|+|.++..|.|++++++. ..+++|+.+|..++.||..+|++.+++. .
T Consensus 207 ~~-~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~e~~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~ 285 (862)
T KOG0160|consen 207 AP-EELEKLKLGTLRRFSYLNQSACVLISGVSDAEEFLSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETS 285 (862)
T ss_pred Cc-hhhhccCcCccccceecccccchhhcccccHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeeccccccc
Confidence 99 89999999999999999999987 8899999999999999999999999887 1
Q ss_pred ecCChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCc
Q psy2473 112 SLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 191 (213)
Q Consensus 112 ~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~~ 191 (213)
..+..+.++.+|+|+|++.+.|..+|+++.+..+++++.++++..+|...||++||.||++||+|+|.+||.+|....+.
T Consensus 286 ~~~~~~~~~~~a~Llg~~~~~l~~~L~~r~i~~~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~ 365 (862)
T KOG0160|consen 286 SSPVDDHLWTAAELLGCDEEALEQWLSKRKILTARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPK 365 (862)
T ss_pred ccccchHHHHHHHHhCCCHHHHHHHHHHHHhhcccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCC
Confidence 11122378899999999999999999999999999999999999999999999999999999999999999999986665
Q ss_pred ceeeecceeeeeeccCCCccCC
Q psy2473 192 VYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 192 ~~~~~~d~~GilDifGFE~~~~ 213 (213)
. -.+||+|||||||.|++
T Consensus 366 ~----~~~igVLDiYgFEsF~~ 383 (862)
T KOG0160|consen 366 A----ERFIGVLDIYGFESFEV 383 (862)
T ss_pred c----cceeeeehccccccccc
Confidence 1 23789999999999974
No 22
>KOG4229|consensus
Probab=100.00 E-value=3.9e-41 Score=321.99 Aligned_cols=207 Identities=30% Similarity=0.451 Sum_probs=189.9
Q ss_pred cccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCC----C--------Cccch---------hHHHHHHhcC
Q psy2473 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQS----K--------GKSSS---------WKTLTVSSSG 56 (213)
Q Consensus 4 ~~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~----G--------EksRv---------fhiFYqll~g 56 (213)
.+.++.+|+.++|+|||||||+|.+|+||||||| ..+ | ||+|+ |||||++++|
T Consensus 180 ~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~ag 259 (1062)
T KOG4229|consen 180 NSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYIKVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAG 259 (1062)
T ss_pred CCchhhhhhcchHHHHHhcccCCcccCchhhhhheEEeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheec
Confidence 4678999999999999999999999999999999 222 3 99999 9999999999
Q ss_pred CCHHHHhhcccCCCcccccccCCCCC-C-CCCchHHHHHHHHHHHHhcCCCcccee------------------------
Q psy2473 57 ATPEQRKEFILEDPKTYLFLSNGNLP-V-PGVDDAVEFQATVQAMNIMGMTNEDYS------------------------ 110 (213)
Q Consensus 57 ~~~~~~~~l~L~~~~~~~yl~~~~~~-~-~~~~d~~~f~~l~~al~~lg~~~~e~~------------------------ 110 (213)
++.+++..+.|..+..|.||+++... + ++.++.+.|..+..+|.++||..+++.
T Consensus 260 l~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~~~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~ 339 (1062)
T KOG4229|consen 260 LSENELKAFVLGEAENYEYLEQGALFTISDGEDDVAQFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQ 339 (1062)
T ss_pred cchhhhhHHhhcCCCCHHHhhccccccccchHHHHHhHHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhccc
Confidence 99999999999999999999998765 5 788999999999999999999998877
Q ss_pred ---eecCChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy2473 111 ---ASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDR 187 (213)
Q Consensus 111 ---~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~ 187 (213)
+.+.++..++.+|.||.++++.|.++++.++....||.+..+++.++|.++||++||.||++||.|||.+||..+.+
T Consensus 340 ~d~~~v~~~~~v~~vA~lL~~~~~~l~~alt~~~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~ 419 (1062)
T KOG4229|consen 340 QDSAEVENEEAVERVACLLLIKEKLLQEALTARVNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSP 419 (1062)
T ss_pred ccchhcccchHHHHHHHHhhcCHHHhhhhhcccceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCc
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCcceeeecceeeeeeccCCCccCC
Q psy2473 188 TKRQVYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 188 ~~~~~~~~~~d~~GilDifGFE~~~~ 213 (213)
..... -.+.||+|||||||+|++
T Consensus 420 ~~~~~---~~~~IgiLdiFgfE~f~~ 442 (1062)
T KOG4229|consen 420 ESDIS---DILSIGILDIFGFENFER 442 (1062)
T ss_pred ccccc---ccceeehhhhhcccchhh
Confidence 66642 246899999999999953
No 23
>PHA01976 helix-turn-helix protein
Probab=80.23 E-value=2.9 Score=27.13 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=18.6
Q ss_pred ecCChHHHHHHHHHhCCCHHHHH
Q psy2473 112 SLPDNTVAQKIAKLLGLSITEMT 134 (213)
Q Consensus 112 ~~~~~~~l~~aA~LLgv~~~~L~ 134 (213)
..++.+.+..+|+.|||+++.|.
T Consensus 40 ~~p~~~~l~~ia~~l~v~~~~l~ 62 (67)
T PHA01976 40 RLPNLKTLLRLADALGVTLDWLC 62 (67)
T ss_pred CCCCHHHHHHHHHHHCcCHHHHh
Confidence 34577789999999999998874
No 24
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=76.32 E-value=2.4 Score=26.24 Aligned_cols=21 Identities=38% Similarity=0.414 Sum_probs=14.6
Q ss_pred cCChHHHHHHHHHhCCCHHHH
Q psy2473 113 LPDNTVAQKIAKLLGLSITEM 133 (213)
Q Consensus 113 ~~~~~~l~~aA~LLgv~~~~L 133 (213)
..+.+.+..+|..||++++.|
T Consensus 35 ~~~~~~~~~ia~~l~~~~~~l 55 (55)
T PF01381_consen 35 NPSLDTLKKIAKALGVSPEYL 55 (55)
T ss_dssp TSBHHHHHHHHHHHTSEHHHH
T ss_pred CCCHHHHHHHHHHHCCCHHHC
Confidence 355667777777777777654
No 25
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=66.75 E-value=6.5 Score=25.14 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=15.5
Q ss_pred cCChHHHHHHHHHhCCCHHHHHh
Q psy2473 113 LPDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 113 ~~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
..+...+..+|+.|||++++|..
T Consensus 38 ~~~~~~l~~i~~~~~v~~~~l~~ 60 (64)
T PF12844_consen 38 KPSVSTLKKIAEALGVSLDELFD 60 (64)
T ss_dssp --BHHHHHHHHHHHTS-HHHHCC
T ss_pred CCCHHHHHHHHHHhCCCHHHHhc
Confidence 44567788888888888887743
No 26
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=64.06 E-value=5.5 Score=25.38 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=13.8
Q ss_pred cCChHHHHHHHHHhCCCHHHHHh
Q psy2473 113 LPDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 113 ~~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
-.+.+.+..+|..|||++++|..
T Consensus 37 ~~~~~~l~~ia~~l~~~~~el~~ 59 (63)
T PF13443_consen 37 NPSLDTLEKIAKALNCSPEELFE 59 (63)
T ss_dssp ---HHHHHHHHHHHT--HHHCTE
T ss_pred cccHHHHHHHHHHcCCCHHHHhh
Confidence 34556788888888888887753
No 27
>PRK13890 conjugal transfer protein TrbA; Provisional
Probab=59.55 E-value=14 Score=27.32 Aligned_cols=44 Identities=20% Similarity=0.300 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCcccee----------------eecCChHHHHHHHHHhCCCHHHHHh
Q psy2473 92 FQATVQAMNIMGMTNEDYS----------------ASLPDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 92 f~~l~~al~~lg~~~~e~~----------------~~~~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
+.++...++..|++.+|.. -.-.+.+.+..+|+.||++.+.|..
T Consensus 7 ~~~l~~ll~~~Glsq~eLA~~~Gis~~~is~iE~g~~~ps~~~l~kIa~aL~v~~~~L~~ 66 (120)
T PRK13890 7 FTNVLRLLDERHMTKKELSERSGVSISFLSDLTTGKANPSLKVMEAIADALETPLPLLLE 66 (120)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHHhc
Confidence 5567777778888877765 1235778899999999999888753
No 28
>PHA02591 hypothetical protein; Provisional
Probab=58.54 E-value=24 Score=24.31 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCCccceeeecCChHHHHHHHHHhCCCHHHHHhhh
Q psy2473 92 FQATVQAMNIMGMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKAF 137 (213)
Q Consensus 92 f~~l~~al~~lg~~~~e~~~~~~~~~~l~~aA~LLgv~~~~L~~~L 137 (213)
...+-.-|..+|++ .+.+|++|||+.+...+.+
T Consensus 48 ~~~vA~eL~eqGlS-------------qeqIA~~LGVsqetVrKYL 80 (83)
T PHA02591 48 LISVTHELARKGFT-------------VEKIASLLGVSVRKVRRYL 80 (83)
T ss_pred HHHHHHHHHHcCCC-------------HHHHHHHhCCCHHHHHHHH
Confidence 44566788889999 4789999999998887765
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=53.89 E-value=6.8 Score=31.09 Aligned_cols=27 Identities=26% Similarity=0.097 Sum_probs=23.1
Q ss_pred HhhhhHHHHHhc-CcccCCCCCCccccc
Q psy2473 11 LLQANPILEAFG-NAKTVKNDNSSRFVL 37 (213)
Q Consensus 11 i~~~~~iLeaFG-nA~T~~N~nSSRfgk 37 (213)
+++..+..+++. +|.|.+|.+|||...
T Consensus 58 ~~~ll~~g~~~R~~~~t~~N~~SSRsH~ 85 (186)
T cd01363 58 VIDLMDKGNANRTTAATAMNEHSSRSHS 85 (186)
T ss_pred HHHHHhhccccccccccCCCCccCcccE
Confidence 667777788898 999999999999765
No 30
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.22 E-value=16 Score=28.08 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCCHHHHHh
Q psy2473 117 TVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 117 ~~l~~aA~LLgv~~~~L~~ 135 (213)
..++++|+||||+++++..
T Consensus 124 ~vi~RvAeLLgV~~~d~V~ 142 (148)
T COG4103 124 HVIWRVAELLGVSPEDRVR 142 (148)
T ss_pred HHHHHHHHHhCCCHHHHHH
Confidence 4689999999999999844
No 31
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=50.66 E-value=20 Score=31.47 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCCccceee----------------ecCCh------HHHHHHHHHhCCCHHHHHhhhhc
Q psy2473 93 QATVQAMNIMGMTNEDYSA----------------SLPDN------TVAQKIAKLLGLSITEMTKAFLK 139 (213)
Q Consensus 93 ~~l~~al~~lg~~~~e~~~----------------~~~~~------~~l~~aA~LLgv~~~~L~~~L~~ 139 (213)
+.|+.+.+.+|++.+++.. .-..+ ..+...|++|||+++.|...+-.
T Consensus 17 ~~Lr~aRe~~GlSq~~vA~~l~l~~~~I~~iE~g~~~~~~~~tf~RGyir~yA~~lgv~~~~L~~~~~~ 85 (331)
T PRK10856 17 ERLRQAREQLGLTQQAVAERLCLKVSTVRDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELLPGLEK 85 (331)
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHCcCHHHHHHhhhh
Confidence 4588888999999887760 01122 34788999999999999876643
No 32
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=50.51 E-value=16 Score=21.11 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=10.1
Q ss_pred ChHHHHHHHHHhCCCHHH
Q psy2473 115 DNTVAQKIAKLLGLSITE 132 (213)
Q Consensus 115 ~~~~l~~aA~LLgv~~~~ 132 (213)
+.+.+..+++.||++++.
T Consensus 38 ~~~~~~~i~~~~~~~~~~ 55 (56)
T smart00530 38 SLETLKKLAKALGVSLDE 55 (56)
T ss_pred CHHHHHHHHHHhCCChhh
Confidence 445556666666665543
No 33
>PF12728 HTH_17: Helix-turn-helix domain
Probab=50.21 E-value=19 Score=21.83 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCHHHHHhhhhcceE
Q psy2473 119 AQKIAKLLGLSITEMTKAFLKPRI 142 (213)
Q Consensus 119 l~~aA~LLgv~~~~L~~~L~~~~~ 142 (213)
++.+|++|||+...+.+++-...+
T Consensus 4 ~~e~a~~l~is~~tv~~~~~~g~i 27 (51)
T PF12728_consen 4 VKEAAELLGISRSTVYRWIRQGKI 27 (51)
T ss_pred HHHHHHHHCcCHHHHHHHHHcCCC
Confidence 468999999999999998876654
No 34
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=48.55 E-value=46 Score=23.52 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCCccceeeecCChHHHHHHHHHhCCCHHHHHhhhhcc
Q psy2473 91 EFQATVQAMNIMGMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKAFLKP 140 (213)
Q Consensus 91 ~f~~l~~al~~lg~~~~e~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~ 140 (213)
.=++++..++..|++ .+.+|.=||+++++|.++|--.
T Consensus 11 T~~ELq~nf~~~~ls-------------~~~ia~dL~~s~~~le~vL~l~ 47 (89)
T PF10078_consen 11 TRQELQANFELSGLS-------------LEQIAADLGTSPEHLEQVLNLK 47 (89)
T ss_pred HHHHHHHHHHHcCCC-------------HHHHHHHhCCCHHHHHHHHcCC
Confidence 446788899999998 5788999999999999998755
No 35
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=48.41 E-value=55 Score=19.19 Aligned_cols=32 Identities=31% Similarity=0.396 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCCCccceeeecCChHHHHHHHHHhCCCHHHHHhhh
Q psy2473 93 QATVQAMNIMGMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKAF 137 (213)
Q Consensus 93 ~~l~~al~~lg~~~~e~~~~~~~~~~l~~aA~LLgv~~~~L~~~L 137 (213)
+-+..+|+..|.+ ...+|+.|||+...|..-+
T Consensus 8 ~~i~~aL~~~~gn-------------~~~aA~~Lgisr~tL~~kl 39 (42)
T PF02954_consen 8 QLIRQALERCGGN-------------VSKAARLLGISRRTLYRKL 39 (42)
T ss_dssp HHHHHHHHHTTT--------------HHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHHHhCCC-------------HHHHHHHHCCCHHHHHHHH
Confidence 3466667665554 5799999999998887644
No 36
>KOG2612|consensus
Probab=47.85 E-value=34 Score=24.07 Aligned_cols=49 Identities=6% Similarity=0.030 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhhhcccc----------cCcceeeecceeeeeeccCCC
Q psy2473 161 AVEAISKACYERMFRW-LVNRINRSLDRT----------KRQVYFKLINRYGIILCFLFQ 209 (213)
Q Consensus 161 ~rDalak~LY~~LF~w-IV~~IN~~l~~~----------~~~~~~~~~d~~GilDifGFE 209 (213)
..|..|..||..|.+- |+..+|+..... .+..+..-.+--|=|||||-+
T Consensus 7 niDe~aNgilnnLL~~~iqdI~a~e~~~qkl~k~~~~D~rpedssY~f~~~gnLDI~Giq 66 (103)
T KOG2612|consen 7 NIDEAANGILNNLLDDAIQDIFAEEHHLQKLGKLAALDGRPEDSSYRFCEMGNLDIFGIQ 66 (103)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccccceeecCCCCcchhhhh
Confidence 4567788888877765 444445433221 111334445667889999976
No 37
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=47.57 E-value=44 Score=30.04 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCHHHHHhhhhcceEeeC-ceeEeecCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2473 117 TVAQKIAKLLGLSITEMTKAFLKPRIKVG-RDFVTKSQTK---------EQVEFAVEAISKACYERMFRWLVNRIN 182 (213)
Q Consensus 117 ~~l~~aA~LLgv~~~~L~~~L~~~~~~~~-~e~v~~~~~~---------~~A~~~rDalak~LY~~LF~wIV~~IN 182 (213)
..++.+|+-||++.++|.+.-....-.+. +..+.+.... ....+..-+++.+++.+.+..+..+++
T Consensus 266 rFLE~~A~~Lgv~v~E~~~~A~~~~~~v~i~S~CaVF~eSevi~~~~~G~~~EdI~AGl~~Sv~~~v~~~~~~~~~ 341 (396)
T COG1924 266 RFLEVIARRLGVDVEELGKLALKATPPVKINSRCAVFAESEVISALAEGASPEDILAGLAYSVAENVAEKVIKRVD 341 (396)
T ss_pred hHHHHHHHHhCCCHHHHHHHHhcCCCCcccCCeeEEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 57999999999999999886665433221 2222222211 123455667777777777776666554
No 38
>PF13560 HTH_31: Helix-turn-helix domain; PDB: 3F51_C 3F52_A 3PXP_A 2OFY_A.
Probab=46.61 E-value=18 Score=23.15 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=14.9
Q ss_pred cCChHHHHHHHHHhCCCHHHHH
Q psy2473 113 LPDNTVAQKIAKLLGLSITEMT 134 (213)
Q Consensus 113 ~~~~~~l~~aA~LLgv~~~~L~ 134 (213)
.++.+.+..+|+.||++++++.
T Consensus 41 ~p~~~~l~~l~~~l~~~~~~~~ 62 (64)
T PF13560_consen 41 RPSPDTLQRLARALGVPPDERA 62 (64)
T ss_dssp S-BHHHHHHHHHHTT--HHHHH
T ss_pred CCCHHHHHHHHHHHCcCHHHHc
Confidence 3667788888888888887765
No 39
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=46.33 E-value=29 Score=25.90 Aligned_cols=41 Identities=15% Similarity=0.074 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCcccee----------------eecCChHHHHHHHHHhCCCHHHHH
Q psy2473 94 ATVQAMNIMGMTNEDYS----------------ASLPDNTVAQKIAKLLGLSITEMT 134 (213)
Q Consensus 94 ~l~~al~~lg~~~~e~~----------------~~~~~~~~l~~aA~LLgv~~~~L~ 134 (213)
.++...+..|+++.+.. ...++.+.+..+|+.|||+++.|.
T Consensus 9 rlk~~R~~~gltq~~lA~~~gvs~~~is~~E~g~~~p~~~~l~~la~~l~vs~~~l~ 65 (135)
T PRK09706 9 RIRYRRKQLKLSQRSLAKAVKVSHVSISQWERDETEPTGKNLFALAKALQCSPTWLL 65 (135)
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHh
Confidence 34555555666655554 234566789999999999998775
No 40
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=44.42 E-value=25 Score=26.55 Aligned_cols=40 Identities=28% Similarity=0.256 Sum_probs=23.2
Q ss_pred HHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHH
Q psy2473 118 VAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQ 157 (213)
Q Consensus 118 ~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~ 157 (213)
.+..+|++||++.+++.+.+..+.=.+.+..+..+.++++
T Consensus 99 s~~~la~~Lg~~~~el~~~~~~~gW~~d~~~~~~~~~~~~ 138 (143)
T PF10075_consen 99 SLSDLAEMLGLSEEELEKFIKSRGWTVDGDGVLFPPNPEE 138 (143)
T ss_dssp -HHHHHHHTTS-HHHHHHHHHHHT-EE-----EE---HHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHcCCEECCCccEEecCCcc
Confidence 3678999999999999999888755555555555554443
No 41
>cd00093 HTH_XRE Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.
Probab=41.17 E-value=29 Score=20.04 Aligned_cols=16 Identities=25% Similarity=0.522 Sum_probs=7.9
Q ss_pred HHHHHhCCCHHHHHhh
Q psy2473 121 KIAKLLGLSITEMTKA 136 (213)
Q Consensus 121 ~aA~LLgv~~~~L~~~ 136 (213)
.+|..+|+++..+.++
T Consensus 17 ~~a~~~~~~~~~v~~~ 32 (58)
T cd00093 17 ELAEKLGVSRSTISRI 32 (58)
T ss_pred HHHHHHCCCHHHHHHH
Confidence 4455555555444443
No 42
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=40.78 E-value=35 Score=19.85 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCHHHHHhhhhcce
Q psy2473 119 AQKIAKLLGLSITEMTKAFLKPR 141 (213)
Q Consensus 119 l~~aA~LLgv~~~~L~~~L~~~~ 141 (213)
++.+|++|||+...+.+.+-...
T Consensus 4 ~~e~a~~lgis~~ti~~~~~~g~ 26 (49)
T TIGR01764 4 VEEAAEYLGVSKDTVYRLIHEGE 26 (49)
T ss_pred HHHHHHHHCCCHHHHHHHHHcCC
Confidence 56899999999999998775543
No 43
>TIGR02607 antidote_HigA addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by Pfam model pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair.
Probab=40.78 E-value=49 Score=21.73 Aligned_cols=22 Identities=27% Similarity=0.196 Sum_probs=16.0
Q ss_pred CChHHHHHHHHHhCCCHHHHHh
Q psy2473 114 PDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 114 ~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
.+.+.+..+|+.|||+++.|..
T Consensus 45 ~~~~~~~~l~~~l~v~~~~l~~ 66 (78)
T TIGR02607 45 ITADMALRLAKALGTSPEFWLN 66 (78)
T ss_pred CCHHHHHHHHHHcCCCHHHHHH
Confidence 3566778888888888776654
No 44
>TIGR00270 conserved hypothetical protein TIGR00270.
Probab=39.73 E-value=41 Score=26.18 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=34.9
Q ss_pred HHH-HHHHHHHHhcCCCcccee----------------eecCChHHHHHHHHHhCCCHHHHHh
Q psy2473 90 VEF-QATVQAMNIMGMTNEDYS----------------ASLPDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 90 ~~f-~~l~~al~~lg~~~~e~~----------------~~~~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
++| ..++.+....|+++++.. -..++.+.+..+|+.|||+..+|..
T Consensus 68 ~~~g~~Ir~~Re~~glSqeeLA~~lgvs~s~IsriE~G~~~Ps~~~l~kLa~~Lgvsl~el~~ 130 (154)
T TIGR00270 68 EDYGIIIRREREKRGWSQEQLAKKIQEKESLIKKIENAEIEPEPKVVEKLEKLLKIKLREQVP 130 (154)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCHHHHcc
Confidence 345 347777788899988776 2345678899999999999988754
No 45
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=39.58 E-value=39 Score=26.62 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCCcccee----------------eecCChHHHHHHHHHhCCCHHHHHh
Q psy2473 93 QATVQAMNIMGMTNEDYS----------------ASLPDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 93 ~~l~~al~~lg~~~~e~~----------------~~~~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
..++...+..|++..+.. -...+.+.+..+|+.|||+.++|..
T Consensus 10 ~~l~~~R~~~glt~~elA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~ 68 (185)
T PRK09943 10 KRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 (185)
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHcc
Confidence 456667777788877665 1234668899999999999998853
No 46
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=38.31 E-value=41 Score=19.41 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCHHHHHhhhhcceE
Q psy2473 119 AQKIAKLLGLSITEMTKAFLKPRI 142 (213)
Q Consensus 119 l~~aA~LLgv~~~~L~~~L~~~~~ 142 (213)
+..+|++|||++..+.++.-...+
T Consensus 3 ~~e~a~~lgvs~~tl~~~~~~g~~ 26 (49)
T cd04762 3 TKEAAELLGVSPSTLRRWVKEGKL 26 (49)
T ss_pred HHHHHHHHCcCHHHHHHHHHcCCC
Confidence 467999999999999988766544
No 47
>PF09048 Cro: Cro; InterPro: IPR000655 Bacteriophage lambda encodes two repressors: the Cro repressor that acts to turn off early gene transcription during the lytic cycle, and the lambda or cI repressor that is required to maintain lysogenic growth. Together the Cro and cI repressors form a helix-turn-helix (HTH) superfamily. The lambda Cro repressor binds to DNA as a highly flexible dimer. The crystal structure of the lambda Cro repressor [] reveals a HTH DNA-binding protein with an alpha/beta fold that differs from other Cro family members, possibly by an evolutionary fold change []. Most Cro proteins, such as Enterobacteria phage P22 Cro and Bacteriophage 434 Cro, have an all-alpha structure that is thought to be ancestral to lambda Cro, where the fourth and fifth helices are replaced by a beta-sheet, possibly as a result of secondary structure switching rather than by nonhomologous replacement []. This entry represents the lambda-type Cro repressor with an alpha/beta topology.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 5CRO_A 2ECS_A 2OVG_A 6CRO_A 1D1L_A 2ORC_A 1D1M_B 3ORC_A 1ORC_A 2A63_A ....
Probab=37.00 E-value=60 Score=21.10 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=18.9
Q ss_pred HHHHHHhCCCHHHHHhhhhc-ceEee
Q psy2473 120 QKIAKLLGLSITEMTKAFLK-PRIKV 144 (213)
Q Consensus 120 ~~aA~LLgv~~~~L~~~L~~-~~~~~ 144 (213)
..+|++|||......++|.. |.|.+
T Consensus 16 ~kaA~~lGV~Q~AIsKAlr~gR~I~v 41 (59)
T PF09048_consen 16 AKAARALGVTQSAISKALRAGRNIFV 41 (59)
T ss_dssp HHHHHHHTS-HHHHHHHHHCT-EEEE
T ss_pred HHHHHHcCCcHHHHHHHHHcCCcEEE
Confidence 57999999999999999985 44443
No 48
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=35.83 E-value=53 Score=27.90 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhCCCHHHHHhhhhc
Q psy2473 116 NTVAQKIAKLLGLSITEMTKAFLK 139 (213)
Q Consensus 116 ~~~l~~aA~LLgv~~~~L~~~L~~ 139 (213)
.+.+.++|++||++..++...+-.
T Consensus 151 ~~~L~~Ia~~Lgis~~df~~~~~~ 174 (267)
T PRK09430 151 RQVLYVIAEELGFSRFQFDQLLRM 174 (267)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 356899999999999888877653
No 49
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=35.72 E-value=60 Score=25.12 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCCHHHHHhhh
Q psy2473 117 TVAQKIAKLLGLSITEMTKAF 137 (213)
Q Consensus 117 ~~l~~aA~LLgv~~~~L~~~L 137 (213)
..+.++|++||++..++...+
T Consensus 111 ~lL~~iA~~LGis~~~~~~l~ 131 (150)
T cd07311 111 AAVRKAASLLGISEDEVQKLE 131 (150)
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 468899999999998888755
No 50
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=35.38 E-value=48 Score=20.01 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=18.6
Q ss_pred HHHHHHhcCCCccceeeecCChHHHHHHHHHhCCCHHHHHhhhh
Q psy2473 95 TVQAMNIMGMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKAFL 138 (213)
Q Consensus 95 l~~al~~lg~~~~e~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~ 138 (213)
+..+.+..|+++ +.+|+.+|+++..+.++..
T Consensus 7 l~~~r~~~gltq-------------~~lA~~~gvs~~~vs~~e~ 37 (58)
T TIGR03070 7 VRARRKALGLTQ-------------ADLADLAGVGLRFIRDVEN 37 (58)
T ss_pred HHHHHHHcCCCH-------------HHHHHHhCCCHHHHHHHHC
Confidence 445555666664 4566666666666666553
No 51
>PF00376 MerR: MerR family regulatory protein; InterPro: IPR000551 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these is the MerR subfamily. MerR, which is found in many bacterial species mediates the mercuric-dependent induction of the mercury resistance operon. In the absence of mercury merR represses transcription by binding tightly, as a dimer, to the 'mer' operator region; when mercury is present the dimeric complex binds a single ion and becomes a potent transcriptional activator, while remaining bound to the mer site. Members of the family include the mercuric resistance operon regulatory protein merR; Bacillus subtilis bltR and bmrR; Bacillus glnR; Streptomyces coelicolor hspR; Bradyrhizobium japonicum nolA; Escherichia coli superoxide response regulator soxR; and Streptomyces lividans transcriptional activator tipA [, , , , , ]. Other members include hypothetical proteins from E. coli, B. subtilis and Haemophilus influenzae. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3HH0_A 2DG6_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q07_A 1Q06_A 1Q05_B ....
Probab=35.18 E-value=49 Score=19.21 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=15.3
Q ss_pred HHHHHHHhCCCHHHHHhhhhc
Q psy2473 119 AQKIAKLLGLSITEMTKAFLK 139 (213)
Q Consensus 119 l~~aA~LLgv~~~~L~~~L~~ 139 (213)
...+|+++||++..|..+--.
T Consensus 2 i~e~A~~~gvs~~tlR~ye~~ 22 (38)
T PF00376_consen 2 IGEVAKLLGVSPRTLRYYERE 22 (38)
T ss_dssp HHHHHHHHTS-HHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHC
Confidence 357899999999999765433
No 52
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=34.61 E-value=1.3e+02 Score=23.06 Aligned_cols=28 Identities=11% Similarity=0.218 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHhCCCHHHHHhhhhcceE
Q psy2473 115 DNTVAQKIAKLLGLSITEMTKAFLKPRI 142 (213)
Q Consensus 115 ~~~~l~~aA~LLgv~~~~L~~~L~~~~~ 142 (213)
+++.++.+|+.|||++.+.....+....
T Consensus 39 p~~~~~~iA~~l~v~~~~v~~v~tFY~~ 66 (154)
T PRK07539 39 PDEAIEAVADYLGMPAIDVEEVATFYSM 66 (154)
T ss_pred CHHHHHHHHHHhCcCHHHHHHHHHHHhh
Confidence 5778999999999999999998886554
No 53
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=34.37 E-value=1.7e+02 Score=23.11 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=25.6
Q ss_pred CChHHHHHHHHHhCCCHHHHHhhhhcceEe
Q psy2473 114 PDNTVAQKIAKLLGLSITEMTKAFLKPRIK 143 (213)
Q Consensus 114 ~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~ 143 (213)
-+++.++.+|+.|||++.++....+.....
T Consensus 52 Ip~e~~~~iA~~l~v~~a~V~gVatFY~~f 81 (169)
T PRK07571 52 LERDLLLYVARQLKLPLSRVYGVATFYHLF 81 (169)
T ss_pred CCHHHHHHHHHHhCcCHHHHHHHHHHcccc
Confidence 457889999999999999999999876543
No 54
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=34.24 E-value=71 Score=20.37 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=22.8
Q ss_pred ecCChHHHHHHHHHhCCCHHHHHhhhhc
Q psy2473 112 SLPDNTVAQKIAKLLGLSITEMTKAFLK 139 (213)
Q Consensus 112 ~~~~~~~l~~aA~LLgv~~~~L~~~L~~ 139 (213)
.+.++..+..-|+-|||++++|..+.-.
T Consensus 16 ~~~e~~ev~ywa~~~gvt~~~L~~AV~~ 43 (57)
T PF12244_consen 16 DLSEPYEVRYWAKRFGVTEEQLREAVRA 43 (57)
T ss_pred CCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 3566778899999999999999987743
No 55
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=33.75 E-value=23 Score=21.52 Aligned_cols=19 Identities=11% Similarity=0.357 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCCcccee
Q psy2473 92 FQATVQAMNIMGMTNEDYS 110 (213)
Q Consensus 92 f~~l~~al~~lg~~~~e~~ 110 (213)
..++..||..|||+..|+.
T Consensus 3 ~~d~~~AL~~LGy~~~e~~ 21 (47)
T PF07499_consen 3 LEDALEALISLGYSKAEAQ 21 (47)
T ss_dssp HHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHHcCCCHHHHH
Confidence 5678999999999976553
No 56
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=33.75 E-value=49 Score=19.45 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=19.1
Q ss_pred HHHHHHHhCCCHHHHHhhhhcceE
Q psy2473 119 AQKIAKLLGLSITEMTKAFLKPRI 142 (213)
Q Consensus 119 l~~aA~LLgv~~~~L~~~L~~~~~ 142 (213)
+..+|+++||++..|..+.-...+
T Consensus 3 ~~e~a~~~gv~~~tlr~~~~~g~l 26 (49)
T cd04761 3 IGELAKLTGVSPSTLRYYERIGLL 26 (49)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCC
Confidence 467999999999999987655443
No 57
>smart00422 HTH_MERR helix_turn_helix, mercury resistance.
Probab=33.63 E-value=1.2e+02 Score=19.22 Aligned_cols=41 Identities=17% Similarity=0.102 Sum_probs=25.8
Q ss_pred HHHHHHHhCCCHHHHHhhhhcceEeeC--ceeEeecCCHHHHH
Q psy2473 119 AQKIAKLLGLSITEMTKAFLKPRIKVG--RDFVTKSQTKEQVE 159 (213)
Q Consensus 119 l~~aA~LLgv~~~~L~~~L~~~~~~~~--~e~v~~~~~~~~A~ 159 (213)
+..+|+++||++..|..+.-..-+... .+.-....+.++..
T Consensus 3 ~~eva~~~gvs~~tlr~~~~~gli~~~~~~~~g~r~y~~~dl~ 45 (70)
T smart00422 3 IGEVAKLAGVSVRTLRYYERIGLLPPPIRTEGGYRLYSDEDLE 45 (70)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCCCCCccCCCCCEecCHHHHH
Confidence 467899999999999988665544321 22222345555543
No 58
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=32.65 E-value=1.6e+02 Score=22.41 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=24.2
Q ss_pred ChHHHHHHHHHhCCCHHHHHhhhhcceE
Q psy2473 115 DNTVAQKIAKLLGLSITEMTKAFLKPRI 142 (213)
Q Consensus 115 ~~~~l~~aA~LLgv~~~~L~~~L~~~~~ 142 (213)
+++.++.+|+.|||++.++....+....
T Consensus 33 ~~~~~~~iA~~l~~~~~~v~~v~tFY~~ 60 (148)
T TIGR01958 33 TPEAIAAVAEMLGIPPVWVYEVATFYSM 60 (148)
T ss_pred CHHHHHHHHHHhCcCHHHHHHHHhHHhh
Confidence 4778999999999999999998886554
No 59
>PRK06424 transcription factor; Provisional
Probab=32.30 E-value=30 Score=26.61 Aligned_cols=43 Identities=28% Similarity=0.522 Sum_probs=28.0
Q ss_pred HHHHH-HHHHHHhcCCCcccee----------------eecCChHHHHHHHHHhCCCHHH
Q psy2473 90 VEFQA-TVQAMNIMGMTNEDYS----------------ASLPDNTVAQKIAKLLGLSITE 132 (213)
Q Consensus 90 ~~f~~-l~~al~~lg~~~~e~~----------------~~~~~~~~l~~aA~LLgv~~~~ 132 (213)
.+|.. ++.+.+..|+++++.. -..++.+.+..+|..|||+..+
T Consensus 83 ~~~g~~Ir~lRe~~GLSQ~eLA~~iGvs~stIskiE~G~~~Ps~~~l~kLa~~Lgvsl~e 142 (144)
T PRK06424 83 EDYAELVKNARERLSMSQADLAAKIFERKNVIASIERGDLLPDIKTARKLEKILGITLIE 142 (144)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCCC
Confidence 34444 6667888899987665 1234566777777777776543
No 60
>PF08667 BetR: BetR domain; InterPro: IPR013975 CheY-like phosphoacceptor (or receiver [REC]) domain is a common module in a variety of response regulators of the bacterial signal transduction systems. BetR is one of the many response regulators and is encoded mainly in Burkholderia spp. It is a N-terminal helix-turn-helix domain (HTH) and has been shown to be related to the XRE-type HTH domain (IPR001387 from INTERPRO), it has been suggested that BetR would have dimerization, protein-protein interaction, and activation/relief-of-inhibition properties [].
Probab=31.97 E-value=1.2e+02 Score=23.55 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCCcccee--------------------eecCChHHHHHHHHHhCCCHHHHH
Q psy2473 91 EFQATVQAMNIMGMTNEDYS--------------------ASLPDNTVAQKIAKLLGLSITEMT 134 (213)
Q Consensus 91 ~f~~l~~al~~lg~~~~e~~--------------------~~~~~~~~l~~aA~LLgv~~~~L~ 134 (213)
-...+...|+.-|+++.+.. ...=+-+.+..+|+.+|+++++|.
T Consensus 6 ~~erV~~Ll~~~Gi~kr~~~s~LA~iL~Is~ssa~RKL~G~~~ftl~EI~~Ia~~fgvS~d~l~ 69 (147)
T PF08667_consen 6 IAERVRELLDRKGIPKRKHASELADILGISYSSAYRKLNGKSPFTLEEIKKIAKHFGVSPDELF 69 (147)
T ss_pred HHHHHHHHHHHcCCcchhhHHHHHHHHCCCHHHHHHHhcCCCCCCHHHHHHHHHHhCcCHHHHH
Confidence 34456666666666654433 122345789999999999999998
No 61
>KOG0161|consensus
Probab=31.56 E-value=37 Score=36.77 Aligned_cols=40 Identities=10% Similarity=0.240 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhhhcccccCcceeeecceeeeeeccCCCccC
Q psy2473 169 CYERMFRWLVNRINRSLDRTKRQVYFKLINRYGIILCFLFQSIV 212 (213)
Q Consensus 169 LY~~LF~wIV~~IN~~l~~~~~~~~~~~~d~~GilDifGFE~~~ 212 (213)
++..|...|-..+... ...... |+|+|+.|| -||+|.+|+
T Consensus 428 lF~wlV~riN~sld~~-~~~~~f--IgvLDiaGF-EIfe~nSFE 467 (1930)
T KOG0161|consen 428 LFGWLVKRINKSLDSK-QQRDYF--IGVLDIAGF-EIFEFNSFE 467 (1930)
T ss_pred HHHHHHHHHHHHhhhc-cccCCc--ceeeeeccc-cccCcCCHH
Confidence 4555666666666666 444455 899999999 999998886
No 62
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=29.90 E-value=1.8e+02 Score=22.55 Aligned_cols=30 Identities=20% Similarity=0.031 Sum_probs=25.5
Q ss_pred CChHHHHHHHHHhCCCHHHHHhhhhcceEe
Q psy2473 114 PDNTVAQKIAKLLGLSITEMTKAFLKPRIK 143 (213)
Q Consensus 114 ~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~ 143 (213)
-+++.++.+|+.|||++.++....+..+..
T Consensus 39 Ip~e~~~~iA~~l~v~~~~V~~vatFY~~f 68 (156)
T PRK05988 39 VPEDAVPVIAEALNLSRAEVHGVITFYHDF 68 (156)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHhhcc
Confidence 357789999999999999999999876644
No 63
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=29.77 E-value=66 Score=18.13 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=15.5
Q ss_pred HHHHHHhCCCHHHHHhhhhc
Q psy2473 120 QKIAKLLGLSITEMTKAFLK 139 (213)
Q Consensus 120 ~~aA~LLgv~~~~L~~~L~~ 139 (213)
+.+|+.||+..|...+.|..
T Consensus 6 ~diA~~lG~t~ETVSR~l~~ 25 (32)
T PF00325_consen 6 QDIADYLGLTRETVSRILKK 25 (32)
T ss_dssp HHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHH
Confidence 56899999999998887753
No 64
>PF08998 Epsilon_antitox: Bacterial epsilon antitoxin; InterPro: IPR015090 The epsilon antitoxin, produced by various prokaryotes, forms part of a post-segregational killing system, which is involved in the initiation of programmed cell death of plasmid-free cells. The protein is folded into a three-helix bundle that directly interacts with the zeta toxin, inactivating it []. ; GO: 0015643 toxin binding, 0009636 response to toxin, 0031342 negative regulation of cell killing; PDB: 1GVN_C 3Q8X_C.
Probab=29.05 E-value=1e+02 Score=21.63 Aligned_cols=27 Identities=22% Similarity=0.509 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy2473 159 EFAVEAISKACYERMFRWLVNRINRSLDRT 188 (213)
Q Consensus 159 ~~~rDalak~LY~~LF~wIV~~IN~~l~~~ 188 (213)
++...-++.++|.|+.++|++ .-|...
T Consensus 10 iEilnEfs~~vy~rvlnyVln---heldk~ 36 (89)
T PF08998_consen 10 IEILNEFSSSVYNRVLNYVLN---HELDKN 36 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---TT--TT
T ss_pred HHHHHHHHHHHHHHHHHHHHh---hhcccc
Confidence 355677999999999999986 444443
No 65
>TIGR02293 TAS_TIGR02293 putative toxin-antitoxin system antitoxin component, TIGR02293 family. Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. This family was proposed by Makarova, et al. (2009) to be the antitoxin component of a new class of type 2 toxin-antitoxin system, or addiction module.
Probab=26.75 E-value=1.6e+02 Score=22.04 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhCCCHHHHHhhhhcceEe-eCceeEeecCCHHHHHHHHH-----HHHHHHHH---HHHHHHHHHhhhhcc
Q psy2473 116 NTVAQKIAKLLGLSITEMTKAFLKPRIK-VGRDFVTKSQTKEQVEFAVE-----AISKACYE---RMFRWLVNRINRSLD 186 (213)
Q Consensus 116 ~~~l~~aA~LLgv~~~~L~~~L~~~~~~-~~~e~v~~~~~~~~A~~~rD-----alak~LY~---~LF~wIV~~IN~~l~ 186 (213)
...+..+++.+|++.+++.+.+--..-. .+...-..++++++...... +.+..+|+ +--.|+ ++=|..+.
T Consensus 25 ~~~~~~l~~~l~ls~~el~~~lgis~~Tl~R~~~~~~~Ls~~~serl~~l~ri~~~a~~vfg~~~~a~~WL-~~Pn~~lg 103 (133)
T TIGR02293 25 IGALDRLAHLLAIGKAEIFKATGIPKATLQRRKMAHQRLSSEESDRLARVARVWKAAVDVFGGDAEARQWL-FRPVPGLG 103 (133)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-hCcHHhhC
Confidence 4556667777777777766654321110 11111112566665543322 33444553 456688 77788888
Q ss_pred cccCc
Q psy2473 187 RTKRQ 191 (213)
Q Consensus 187 ~~~~~ 191 (213)
...+-
T Consensus 104 g~~Pl 108 (133)
T TIGR02293 104 NRRPI 108 (133)
T ss_pred CCCHH
Confidence 76654
No 66
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=26.41 E-value=58 Score=21.96 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCCHHHHHhhhhcceEe
Q psy2473 118 VAQKIAKLLGLSITEMTKAFLKPRIK 143 (213)
Q Consensus 118 ~l~~aA~LLgv~~~~L~~~L~~~~~~ 143 (213)
++..||+++|++.-++...|-.+-+.
T Consensus 36 S~gkAAelag~s~~eF~~~L~~~gI~ 61 (76)
T PF03683_consen 36 SLGKAAELAGMSRWEFLELLKERGIP 61 (76)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 46799999999999999999887653
No 67
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=26.34 E-value=84 Score=19.11 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=24.9
Q ss_pred cCChHHHHHHHHHhCCCHHHHHhhhhcce
Q psy2473 113 LPDNTVAQKIAKLLGLSITEMTKAFLKPR 141 (213)
Q Consensus 113 ~~~~~~l~~aA~LLgv~~~~L~~~L~~~~ 141 (213)
.++.+..+.+|..+|++......++-.+.
T Consensus 24 ~P~~~~~~~la~~~~l~~~qV~~WF~nrR 52 (59)
T cd00086 24 YPSREEREELAKELGLTERQVKIWFQNRR 52 (59)
T ss_pred CCCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45678899999999999999999987764
No 68
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=26.00 E-value=94 Score=18.77 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=24.5
Q ss_pred cCChHHHHHHHHHhCCCHHHHHhhhhcce
Q psy2473 113 LPDNTVAQKIAKLLGLSITEMTKAFLKPR 141 (213)
Q Consensus 113 ~~~~~~l~~aA~LLgv~~~~L~~~L~~~~ 141 (213)
.++.+....+|..+|++......++-.+.
T Consensus 24 ~P~~~~~~~la~~~~l~~~qV~~WF~nrR 52 (56)
T smart00389 24 YPSREEREELAAKLGLSERQVKVWFQNRR 52 (56)
T ss_pred CCCHHHHHHHHHHHCcCHHHHHHhHHHHh
Confidence 45778899999999999999999887654
No 69
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=25.81 E-value=65 Score=33.78 Aligned_cols=44 Identities=11% Similarity=0.234 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccCcceeeecceeeeeeccCCCccC
Q psy2473 165 ISKACYERMFRWLVNRINRSLDRTKRQVYFKLINRYGIILCFLFQSIV 212 (213)
Q Consensus 165 lak~LY~~LF~wIV~~IN~~l~~~~~~~~~~~~d~~GilDifGFE~~~ 212 (213)
|=-.|+.-|.+-|-..+...=. .... |||+||+|| .||=+.+||
T Consensus 404 lY~~lFdwiV~rIN~sL~~~~~-~~~f--IGVLDIyGF-EiFEkNSFE 447 (1463)
T COG5022 404 LYSNLFDWIVDRINKSLDHSAA-ASNF--IGVLDIYGF-EIFEKNSFE 447 (1463)
T ss_pred HHHHHHHHHHHHHHhhccCccc-cccc--eeEEeecch-hhhccCcHH
Confidence 4445777777777777777666 3443 899999999 999888776
No 70
>PF09666 Sororin: Sororin protein; InterPro: IPR018605 Sororin is an essential, cell cycle-dependent mediator of sister chromatid cohesion []. The protein is nuclear in interphase cells, dispersed from the chromatin in mitosis, and interacts with the cohesin complex [].
Probab=25.42 E-value=24 Score=27.72 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=10.3
Q ss_pred eeeeeeccCCCccC
Q psy2473 199 RYGIILCFLFQSIV 212 (213)
Q Consensus 199 ~~GilDifGFE~~~ 212 (213)
..|=-++||||.|-
T Consensus 98 ~~~r~nLFGFE~~L 111 (162)
T PF09666_consen 98 QQGRRNLFGFEEFL 111 (162)
T ss_pred ccccccccchhhhc
Confidence 34666899999873
No 71
>PF13693 HTH_35: Winged helix-turn-helix DNA-binding; PDB: 1NEQ_A 1NER_A.
Probab=24.93 E-value=62 Score=22.23 Aligned_cols=19 Identities=26% Similarity=0.213 Sum_probs=10.7
Q ss_pred ChHHHHHHHHHhCCCHHHH
Q psy2473 115 DNTVAQKIAKLLGLSITEM 133 (213)
Q Consensus 115 ~~~~l~~aA~LLgv~~~~L 133 (213)
.+..=..+|+.|||.++++
T Consensus 40 ~pk~E~~IA~aLgv~P~eI 58 (78)
T PF13693_consen 40 WPKGERIIADALGVPPEEI 58 (78)
T ss_dssp -HHHHHHHHHHTTS-HHHH
T ss_pred ChHHHHHHHHHHCcCHHHh
Confidence 3444456677777777665
No 72
>PRK10072 putative transcriptional regulator; Provisional
Probab=24.77 E-value=82 Score=22.43 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcCCCcccee
Q psy2473 91 EFQATVQAMNIMGMTNEDYS 110 (213)
Q Consensus 91 ~f~~l~~al~~lg~~~~e~~ 110 (213)
.+.+++...+.+|+++.+..
T Consensus 34 ~~~eik~LR~~~glTQ~elA 53 (96)
T PRK10072 34 SFTEFEQLRKGTGLKIDDFA 53 (96)
T ss_pred ChHHHHHHHHHcCCCHHHHH
Confidence 34555666667777765443
No 73
>PF13411 MerR_1: MerR HTH family regulatory protein; PDB: 2JML_A 3GP4_A 3GPV_B.
Probab=24.50 E-value=88 Score=19.93 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=18.5
Q ss_pred HHHHHHHhCCCHHHHHhhhhcce
Q psy2473 119 AQKIAKLLGLSITEMTKAFLKPR 141 (213)
Q Consensus 119 l~~aA~LLgv~~~~L~~~L~~~~ 141 (213)
+..+|+++||++..|..+.-..-
T Consensus 3 i~eva~~~gvs~~tlr~y~~~gl 25 (69)
T PF13411_consen 3 IKEVAKLLGVSPSTLRYYEREGL 25 (69)
T ss_dssp HHHHHHHTTTTHHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHHhcC
Confidence 46799999999999988765443
No 74
>smart00497 IENR1 Intron encoded nuclease repeat motif. Repeat of unknown function, but possibly DNA-binding via helix-turn-helix motif (Ponting, unpublished).
Probab=23.72 E-value=1.3e+02 Score=17.97 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=22.9
Q ss_pred hHHHHHHHHHhCCCHHHHHhhhhcceEee
Q psy2473 116 NTVAQKIAKLLGLSITEMTKAFLKPRIKV 144 (213)
Q Consensus 116 ~~~l~~aA~LLgv~~~~L~~~L~~~~~~~ 144 (213)
.+++..||+.||++...+.+++-......
T Consensus 17 f~S~~eAa~~lg~~~~~I~~~~~~~~~~~ 45 (53)
T smart00497 17 FSSIREAAKYLGISHSSISKYLNTGKKFK 45 (53)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHhCCCccC
Confidence 35678899999999999999887755433
No 75
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=23.27 E-value=91 Score=19.08 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=23.7
Q ss_pred cCChHHHHHHHHHhCCCHHHHHhhhhcce
Q psy2473 113 LPDNTVAQKIAKLLGLSITEMTKAFLKPR 141 (213)
Q Consensus 113 ~~~~~~l~~aA~LLgv~~~~L~~~L~~~~ 141 (213)
.++.+..+.+|.-|||+......++.++.
T Consensus 24 ~p~~~~~~~la~~l~l~~~~V~~WF~nrR 52 (57)
T PF00046_consen 24 YPSKEEREELAKELGLTERQVKNWFQNRR 52 (57)
T ss_dssp SCHHHHHHHHHHHHTSSHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccCHHHhH
Confidence 34567788999999999999999887653
No 76
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=23.21 E-value=1.1e+02 Score=17.42 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=16.8
Q ss_pred cCChHHHHHHHHHhCCCHHHHHhh
Q psy2473 113 LPDNTVAQKIAKLLGLSITEMTKA 136 (213)
Q Consensus 113 ~~~~~~l~~aA~LLgv~~~~L~~~ 136 (213)
+..-+.+..+|.-.|++.++|.++
T Consensus 3 V~~gDtl~~IA~~~~~~~~~l~~~ 26 (44)
T PF01476_consen 3 VQPGDTLWSIAKRYGISVDELMEL 26 (44)
T ss_dssp E-TT--HHHHHHHTTS-HHHHHHH
T ss_pred ECcCCcHHHHHhhhhhhHhHHHHh
Confidence 455667899999999999999764
No 77
>PF08984 DUF1858: Domain of unknown function (DUF1858); InterPro: IPR015077 This protein has no known function. It is found in various hypothetical bacterial proteins. ; PDB: 2K53_A 2K5E_A 2FI0_A.
Probab=22.74 E-value=30 Score=22.07 Aligned_cols=46 Identities=9% Similarity=0.237 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCCcccee---eecCChHHHHHHHHHhCCCHHHHH
Q psy2473 89 AVEFQATVQAMNIMGMTNEDYS---ASLPDNTVAQKIAKLLGLSITEMT 134 (213)
Q Consensus 89 ~~~f~~l~~al~~lg~~~~e~~---~~~~~~~~l~~aA~LLgv~~~~L~ 134 (213)
.+.|-++.+-|..+||..-.-. ..+.....++.+|..-|++.+.|.
T Consensus 11 ~~~yP~~~~il~~~gf~~l~~p~~~~~~~~~~Tl~~aa~~~gid~~~li 59 (59)
T PF08984_consen 11 LEQYPELIEILVSYGFHCLGNPVMRNTMAKFETLEQAAKMHGIDLEKLI 59 (59)
T ss_dssp HHH-GGGHHHHHHTTGGGGGSCCHHTTHHHHSBHHHHHHHHT--HHHHH
T ss_pred HHHCHHHHHHHHHcCCcccCCcHHHHhhcccCCHHHHHHHcCCCHHHhC
Confidence 4567778888888888762222 112333468899999999998873
No 78
>PRK09726 antitoxin HipB; Provisional
Probab=22.27 E-value=92 Score=21.35 Aligned_cols=40 Identities=25% Similarity=0.140 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCCcccee----------------eecCChHHHHHHHHHhCCCHHH
Q psy2473 93 QATVQAMNIMGMTNEDYS----------------ASLPDNTVAQKIAKLLGLSITE 132 (213)
Q Consensus 93 ~~l~~al~~lg~~~~e~~----------------~~~~~~~~l~~aA~LLgv~~~~ 132 (213)
..+....+..|+++++.. -...+.+.+..+|+.|||+.+-
T Consensus 15 ~~lk~~R~~~gltq~elA~~~gvs~~tis~~e~g~~~ps~~~l~~ia~~lgv~~~~ 70 (88)
T PRK09726 15 NAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTL 70 (88)
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCcch
Confidence 345566666777765443 1123445666667777766544
No 79
>COG2886 Uncharacterized small protein [Function unknown]
Probab=21.92 E-value=93 Score=21.92 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=25.7
Q ss_pred ChHHHHHHHHHhCCCHHHHHhhhhcceEee
Q psy2473 115 DNTVAQKIAKLLGLSITEMTKAFLKPRIKV 144 (213)
Q Consensus 115 ~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~ 144 (213)
..-++.+||+|.|++..++..-|..|.+..
T Consensus 40 g~vSlg~Aaela~~sl~ef~~eL~~R~i~l 69 (88)
T COG2886 40 GAVSLGRAAELAGMSLNEFEEELRKRGIPL 69 (88)
T ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHhCCCc
Confidence 455789999999999999999998887644
No 80
>cd04763 HTH_MlrA-like Helix-Turn-Helix DNA binding domain of MlrA-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A) and related proteins, N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA-like proteins in this group appear to lack the long dimerization helix seen
Probab=21.91 E-value=1e+02 Score=19.83 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=16.5
Q ss_pred HHHHHHHhCCCHHHHHhhhh
Q psy2473 119 AQKIAKLLGLSITEMTKAFL 138 (213)
Q Consensus 119 l~~aA~LLgv~~~~L~~~L~ 138 (213)
+..+|+++||++..|..+--
T Consensus 3 i~e~A~~~gVs~~tlr~ye~ 22 (68)
T cd04763 3 IGEVALLTGIKPHVLRAWER 22 (68)
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 46799999999999987643
No 81
>cd04764 HTH_MlrA-like_sg1 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 1). The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA-like proteins in this group appear to lack the long dimerization helix seen in the N-terminal domains of typical MerR-like proteins.
Probab=21.90 E-value=1e+02 Score=19.69 Aligned_cols=20 Identities=5% Similarity=0.180 Sum_probs=16.6
Q ss_pred HHHHHHHhCCCHHHHHhhhh
Q psy2473 119 AQKIAKLLGLSITEMTKAFL 138 (213)
Q Consensus 119 l~~aA~LLgv~~~~L~~~L~ 138 (213)
+..+|+++||++..|..+--
T Consensus 3 i~evA~~~gvs~~tlR~~~~ 22 (67)
T cd04764 3 IKEVSEIIGVKPHTLRYYEK 22 (67)
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 46789999999999987743
No 82
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=21.87 E-value=1.1e+02 Score=26.31 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCcccee----------------eecCChHHHHHHHHHhCCCHHHHHh
Q psy2473 93 QATVQAMNIMGMTNEDYS----------------ASLPDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 93 ~~l~~al~~lg~~~~e~~----------------~~~~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
+.++.+.+..|+++++.. -..++.+.+..+|..|||+.+.|..
T Consensus 31 ~rl~~~R~~~gltq~~lA~~~gvs~~~i~~~E~g~~~ps~~~l~~ia~~l~v~~~~l~~ 89 (309)
T PRK08154 31 ERVRTLRARRGMSRKVLAQASGVSERYLAQLESGQGNVSILLLRRVARALGCSLADLLG 89 (309)
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCHHHHhC
Confidence 346666777788877665 2345667889999999999888764
No 83
>PRK02866 cyanate hydratase; Validated
Probab=21.84 E-value=1.7e+02 Score=22.70 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=19.7
Q ss_pred CChHHHHHHHHHhCCCHHHHHhhhhc
Q psy2473 114 PDNTVAQKIAKLLGLSITEMTKAFLK 139 (213)
Q Consensus 114 ~~~~~l~~aA~LLgv~~~~L~~~L~~ 139 (213)
.+++.++.+|++||++++... +|..
T Consensus 45 ls~e~A~kla~~LgL~~~~~~-~l~~ 69 (147)
T PRK02866 45 LPAEEAEKVAELLGLDEDAVA-LLQE 69 (147)
T ss_pred CCHHHHHHHHHHhCCCHHHHH-HHhc
Confidence 477889999999999999554 4543
No 84
>COG2522 Predicted transcriptional regulator [General function prediction only]
Probab=21.71 E-value=3.5e+02 Score=20.16 Aligned_cols=22 Identities=36% Similarity=0.526 Sum_probs=19.4
Q ss_pred HHHHHHhCCCHHHHHhhhhcce
Q psy2473 120 QKIAKLLGLSITEMTKAFLKPR 141 (213)
Q Consensus 120 ~~aA~LLgv~~~~L~~~L~~~~ 141 (213)
..+|+|||+.+....+.|-.++
T Consensus 26 ~~iA~LLGltqaAVS~Yls~kr 47 (119)
T COG2522 26 YRIAKLLGLTQAAVSQYLSGKR 47 (119)
T ss_pred HHHHHHhCCCHHHHHHHHccCC
Confidence 6899999999999999997653
No 85
>PF15026 FAM74: FAM74 protein
Probab=21.70 E-value=2.1e+02 Score=20.71 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccCc
Q psy2473 163 EAISKACYERMFRWLVNRINRSLDRTKRQ 191 (213)
Q Consensus 163 Dalak~LY~~LF~wIV~~IN~~l~~~~~~ 191 (213)
.-|..-+....|-||+-.||...+.-++.
T Consensus 87 qrls~~~h~~~~~~i~~~i~~~~~g~ks~ 115 (127)
T PF15026_consen 87 QRLSLLLHLAVFLWIIIAINFSFSGVKSQ 115 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhh
Confidence 34667777799999999999998876654
No 86
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=21.63 E-value=1.1e+02 Score=22.22 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=9.2
Q ss_pred HHHHHhCCCHHHHHhhh
Q psy2473 121 KIAKLLGLSITEMTKAF 137 (213)
Q Consensus 121 ~aA~LLgv~~~~L~~~L 137 (213)
.+|+++|+++..+.++.
T Consensus 83 ~lA~~lg~~~~tis~~e 99 (127)
T TIGR03830 83 EAAELLGGGVNAFSRYE 99 (127)
T ss_pred HHHHHhCCCHHHHHHHH
Confidence 45555555555555544
No 87
>PF11758 Bacteriocin_IIi: Aureocin-like type II bacteriocin; InterPro: IPR020968 This is a small family of type II bacteriocins usually encoded on a plasmid. Characteristically the members are small, cationic, rich in Lys and Try, and bring about a generalised membrane permeabilisation leading to leakage of ions. The family includes aureocin A, lacticins Q and Z, and BhtB [, ].
Probab=21.49 E-value=60 Score=20.32 Aligned_cols=14 Identities=21% Similarity=0.646 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhhhc
Q psy2473 172 RMFRWLVNRINRSL 185 (213)
Q Consensus 172 ~LF~wIV~~IN~~l 185 (213)
.-|+||+++|++-.
T Consensus 36 ~a~dWI~~kI~~I~ 49 (51)
T PF11758_consen 36 MAIDWIVQKIKKIW 49 (51)
T ss_pred chHHHHHHHHHHHh
Confidence 45899999998753
No 88
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=21.40 E-value=15 Score=23.82 Aligned_cols=39 Identities=21% Similarity=0.380 Sum_probs=25.0
Q ss_pred HhcCCCccceee---e-cCChHHHHHHHHHhCCCHHHHHhhhh
Q psy2473 100 NIMGMTNEDYSA---S-LPDNTVAQKIAKLLGLSITEMTKAFL 138 (213)
Q Consensus 100 ~~lg~~~~e~~~---~-~~~~~~l~~aA~LLgv~~~~L~~~L~ 138 (213)
+.+|+++.|..+ - -..+..+..+|+-+|++.....++|-
T Consensus 2 ~~~gLs~~E~~vy~~Ll~~~~~t~~eIa~~l~i~~~~v~~~L~ 44 (68)
T PF01978_consen 2 EVLGLSENEAKVYLALLKNGPATAEEIAEELGISRSTVYRALK 44 (68)
T ss_dssp HHHCHHHHHHHHHHHHHHHCHEEHHHHHHHHTSSHHHHHHHHH
T ss_pred CcCCcCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 456666666651 1 13444577899999999877666553
No 89
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=20.94 E-value=48 Score=25.00 Aligned_cols=17 Identities=35% Similarity=0.747 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy2473 165 ISKACYERMFRWLVNRI 181 (213)
Q Consensus 165 lak~LY~~LF~wIV~~I 181 (213)
-||..|+.+|.|=....
T Consensus 22 ra~~FY~~vFgW~~~~~ 38 (127)
T COG3324 22 RAKAFYEKVFGWTFEDY 38 (127)
T ss_pred HHHHHHHHhhCceeccc
Confidence 47899999999977655
No 90
>TIGR02935 probable nitrogen fixation protein. Members of this protein family, called DUF269 by Pfam model pfam03270, are strictly limited to nitrogen-fixing species, although not universal among them. The gene typically is found next to the nifX gene (see TIGRFAMs model TIGR02663).
Probab=20.92 E-value=25 Score=26.94 Aligned_cols=9 Identities=44% Similarity=0.541 Sum_probs=6.3
Q ss_pred ccCCCccCC
Q psy2473 205 CFLFQSIVK 213 (213)
Q Consensus 205 ifGFE~~~~ 213 (213)
=|||++++|
T Consensus 109 RFGF~Slek 117 (140)
T TIGR02935 109 RFGFDSLEK 117 (140)
T ss_pred hcCCCCHHH
Confidence 378887765
No 91
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=20.70 E-value=1.6e+02 Score=21.85 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=39.9
Q ss_pred cchhHHHHHHhcCCCHHHHhh-cccCCCcccccccCCCCCCCCCch-----HHHHHHHHHHHHhcCCCccceeeecCChH
Q psy2473 44 SSSWKTLTVSSSGATPEQRKE-FILEDPKTYLFLSNGNLPVPGVDD-----AVEFQATVQAMNIMGMTNEDYSASLPDNT 117 (213)
Q Consensus 44 sRvfhiFYqll~g~~~~~~~~-l~L~~~~~~~yl~~~~~~~~~~~d-----~~~f~~l~~al~~lg~~~~e~~~~~~~~~ 117 (213)
-|+|.|+--|-.|.+.++..+ -++++ -||.+=...++-... ...=.+++...+.+|||+
T Consensus 11 ~Rlf~i~eAlrrG~sveeI~e~T~ID~----wFL~~i~~Iv~~e~~L~~~~~~~~~~~L~~aK~~GFsD----------- 75 (123)
T PF02787_consen 11 ERLFAIAEALRRGYSVEEIHELTKIDP----WFLEQIKNIVDMEKELKEYLNELDPELLRKAKRLGFSD----------- 75 (123)
T ss_dssp THHHHHHHHHHTTB-HHHHHHHH---H----HHHHHHHHHHHHHHHHHHHGGG--HHHHHHHHHTT--H-----------
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHCccH----HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHcCCCH-----------
Confidence 366888888999998766432 22222 133221000000000 000122556677889997
Q ss_pred HHHHHHHHhCCCHHHHHhhhhc
Q psy2473 118 VAQKIAKLLGLSITEMTKAFLK 139 (213)
Q Consensus 118 ~l~~aA~LLgv~~~~L~~~L~~ 139 (213)
..+|.|+|++.++..+.-..
T Consensus 76 --~~IA~l~~~~e~~vr~~R~~ 95 (123)
T PF02787_consen 76 --RQIARLWGVSEEEVRELRKE 95 (123)
T ss_dssp --HHHHHHHTS-HHHHHHHHHH
T ss_pred --HHHHhccCCCHHHHHHHHHH
Confidence 57899999999888776554
No 92
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=20.40 E-value=1e+02 Score=30.00 Aligned_cols=42 Identities=10% Similarity=0.147 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccCcceeeecceeeeeeccC
Q psy2473 165 ISKACYERMFRWLVNRINRSLDRTKRQVYFKLINRYGIILCFL 207 (213)
Q Consensus 165 lak~LY~~LF~wIV~~IN~~l~~~~~~~~~~~~d~~GilDifG 207 (213)
|=..|...+..-|-..+-..-........|+|+|++||- +|.
T Consensus 349 lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE-~f~ 390 (692)
T cd01385 349 LYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFE-DFG 390 (692)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccc-cCC
Confidence 334456666666666665433333445789999999994 443
Done!