Query psy2473
Match_columns 213
No_of_seqs 134 out of 1114
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 17:11:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2473.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2473hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lkx_A Myosin IE heavy chain; 100.0 8.8E-63 3E-67 460.9 19.0 204 5-213 130-395 (697)
2 1kk8_A Myosin heavy chain, str 100.0 1.8E-62 6.2E-67 466.1 19.9 205 4-213 212-469 (837)
3 1w7j_A Myosin VA; motor protei 100.0 1.9E-62 6.4E-67 464.0 19.7 204 5-213 190-446 (795)
4 4db1_A Myosin-7; S1DC, cardiac 100.0 2.4E-62 8.3E-67 461.8 19.8 204 5-213 214-470 (783)
5 1w9i_A Myosin II heavy chain; 100.0 6.3E-62 2.1E-66 458.0 20.5 203 5-213 209-463 (770)
6 2v26_A Myosin VI; calmodulin-b 100.0 3.4E-61 1.2E-65 455.3 16.3 203 5-213 172-461 (784)
7 1g8x_A Myosin II heavy chain f 100.0 9.1E-61 3.1E-65 462.6 18.5 203 5-213 209-463 (1010)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 7.3E-61 2.5E-65 466.4 17.7 204 5-213 190-446 (1080)
9 2ycu_A Non muscle myosin 2C, a 100.0 8.9E-61 3E-65 462.8 16.7 204 5-213 187-442 (995)
10 1i84_S Smooth muscle myosin he 100.0 2.1E-60 7E-65 469.1 16.2 206 4-213 216-473 (1184)
11 4anj_A Unconventional myosin-V 100.0 8.7E-60 3E-64 455.2 15.1 203 5-213 176-465 (1052)
12 3mhs_C SAGA-associated factor 86.2 0.56 1.9E-05 32.7 3.1 48 161-209 7-62 (99)
13 3f6w_A XRE-family like protein 76.1 3.1 0.00011 26.8 3.9 45 95-139 19-79 (83)
14 2r1j_L Repressor protein C2; p 74.3 3.1 0.0001 25.4 3.3 21 114-134 45-65 (68)
15 1adr_A P22 C2 repressor; trans 73.4 3.6 0.00012 25.8 3.6 22 114-135 45-66 (76)
16 3t76_A VANU, transcriptional r 71.9 1.3 4.5E-05 30.0 1.1 43 92-134 26-83 (88)
17 2b5a_A C.BCLI; helix-turn-heli 71.9 4.2 0.00014 25.6 3.7 42 94-135 14-71 (77)
18 3b7h_A Prophage LP1 protein 11 71.1 4.2 0.00014 25.7 3.5 42 94-135 11-69 (78)
19 2xi8_A Putative transcription 68.5 4.8 0.00016 24.3 3.3 21 114-134 41-61 (66)
20 3kz3_A Repressor protein CI; f 67.4 2.3 7.8E-05 27.5 1.6 43 95-137 17-75 (80)
21 3g5g_A Regulatory protein; tra 66.9 5.7 0.0002 27.0 3.7 44 93-136 31-90 (99)
22 3s8q_A R-M controller protein; 65.9 6.8 0.00023 25.1 3.7 42 94-135 15-72 (82)
23 2k9q_A Uncharacterized protein 63.5 5.8 0.0002 25.2 3.0 23 114-136 42-64 (77)
24 3op9_A PLI0006 protein; struct 63.0 6.7 0.00023 27.0 3.5 42 94-135 13-70 (114)
25 1r69_A Repressor protein CI; g 62.9 7.6 0.00026 23.7 3.4 17 119-135 45-61 (69)
26 2kpj_A SOS-response transcript 62.4 5.6 0.00019 26.4 2.8 43 93-135 12-70 (94)
27 1y7y_A C.AHDI; helix-turn-heli 62.3 3.5 0.00012 25.7 1.7 41 93-133 16-72 (74)
28 1neq_A DNA-binding protein NER 60.5 7.5 0.00026 25.1 3.1 42 93-134 12-66 (74)
29 3omt_A Uncharacterized protein 60.4 3.3 0.00011 26.1 1.3 21 113-133 47-67 (73)
30 3vk0_A NHTF, transcriptional r 59.2 9.4 0.00032 26.4 3.7 43 93-135 24-82 (114)
31 1zug_A Phage 434 CRO protein; 56.2 6.2 0.00021 24.2 2.1 17 119-135 47-63 (71)
32 3bs3_A Putative DNA-binding pr 55.5 4.9 0.00017 25.2 1.5 20 114-133 50-69 (76)
33 3qq6_A HTH-type transcriptiona 55.1 14 0.00047 23.6 3.7 23 113-135 50-72 (78)
34 3f52_A CLP gene regulator (CLG 54.1 13 0.00043 25.7 3.6 42 95-136 33-90 (117)
35 3ivp_A Putative transposon-rel 49.4 13 0.00046 25.9 3.2 43 93-135 15-73 (126)
36 2ppx_A AGR_C_3184P, uncharacte 48.7 10 0.00034 25.5 2.3 44 94-138 34-93 (99)
37 1b0n_A Protein (SINR protein); 48.1 19 0.00066 24.2 3.8 23 113-135 41-63 (111)
38 3fym_A Putative uncharacterize 48.1 18 0.00062 25.8 3.8 24 117-140 52-75 (130)
39 3cec_A Putative antidote prote 46.6 20 0.00067 24.1 3.6 22 114-135 58-79 (104)
40 3trb_A Virulence-associated pr 44.4 23 0.0008 24.2 3.7 23 114-136 54-76 (104)
41 2ict_A Antitoxin HIGA; helix-t 43.3 25 0.00085 23.0 3.6 18 114-131 48-65 (94)
42 3kxa_A NGO0477 protein, putati 43.0 24 0.00083 25.5 3.8 27 113-139 107-133 (141)
43 1x57_A Endothelial differentia 43.0 6.4 0.00022 25.9 0.5 42 93-134 16-73 (91)
44 2wus_R RODZ, putative uncharac 42.4 26 0.00089 24.4 3.7 23 117-139 56-78 (112)
45 2ewt_A BLDD, putative DNA-bind 38.5 16 0.00055 22.3 1.9 19 115-133 51-69 (71)
46 2eby_A Putative HTH-type trans 38.5 19 0.00066 24.5 2.5 23 113-135 50-72 (113)
47 3mlf_A Transcriptional regulat 38.5 10 0.00034 26.3 1.0 21 113-133 62-82 (111)
48 2h5n_A Hypothetical protein PG 37.1 12 0.00042 27.0 1.3 21 117-137 107-127 (133)
49 1lmb_3 Protein (lambda repress 36.7 14 0.00049 24.0 1.5 22 114-135 57-78 (92)
50 2k53_A A3DK08 protein; NESG, C 33.6 23 0.00079 23.0 2.1 48 89-138 13-60 (76)
51 3bd1_A CRO protein; transcript 33.3 23 0.00077 22.4 2.0 24 113-137 37-62 (79)
52 3hd5_A Thiol:disulfide interch 33.0 64 0.0022 23.9 5.0 41 113-153 104-166 (195)
53 2wiu_B HTH-type transcriptiona 32.9 6.1 0.00021 25.6 -0.9 18 93-110 15-32 (88)
54 1umq_A Photosynthetic apparatu 32.4 1E+02 0.0036 20.1 5.3 36 91-139 42-77 (81)
55 1ufm_A COP9 complex subunit 4; 31.5 34 0.0012 22.7 2.7 22 118-139 32-53 (84)
56 2ef8_A C.ECOT38IS, putative tr 29.3 58 0.002 20.3 3.6 17 93-109 13-29 (84)
57 1y9q_A Transcriptional regulat 28.2 24 0.00081 26.5 1.7 42 94-135 15-72 (192)
58 2a6c_A Helix-turn-helix motif; 28.1 25 0.00087 22.5 1.6 17 92-108 20-36 (83)
59 2da7_A Zinc finger homeobox pr 27.8 53 0.0018 21.3 3.0 28 114-141 30-57 (71)
60 1gvn_A Epsilon; postsegregatio 27.7 69 0.0024 21.5 3.6 28 159-189 11-38 (90)
61 3fmy_A HTH-type transcriptiona 26.2 23 0.0008 22.2 1.1 12 95-106 16-27 (73)
62 2ofy_A Putative XRE-family tra 25.6 56 0.0019 20.7 3.0 35 101-135 36-76 (86)
63 1sfu_A 34L protein; protein/Z- 25.4 88 0.003 20.4 3.8 44 86-138 8-51 (75)
64 1j9i_A GPNU1 DBD;, terminase s 25.1 54 0.0018 20.2 2.7 22 119-140 5-26 (68)
65 3lfp_A CSP231I C protein; tran 23.2 23 0.00079 23.5 0.6 22 113-134 44-65 (98)
66 1l6x_B Minimized B-domain of p 23.0 48 0.0017 18.1 1.8 17 48-64 7-25 (34)
67 2bnm_A Epoxidase; oxidoreducta 22.5 32 0.0011 25.8 1.4 42 94-135 14-72 (198)
68 1g2h_A Transcriptional regulat 21.7 58 0.002 19.7 2.3 35 91-139 22-56 (61)
69 3e7l_A Transcriptional regulat 21.3 1.4E+02 0.0049 17.9 5.4 36 93-141 22-57 (63)
70 2pyq_A Uncharacterized protein 20.7 33 0.0011 24.3 1.0 12 42-55 93-104 (114)
71 1dw9_A Cyanate lyase; cyanate 20.7 1.1E+02 0.0036 22.9 3.9 43 95-138 18-76 (156)
72 1w9i_A Myosin II heavy chain; 20.5 24 0.00083 33.3 0.4 40 168-212 428-467 (770)
73 3eus_A DNA-binding protein; st 20.3 71 0.0024 20.4 2.7 36 94-129 18-69 (86)
No 1
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=8.8e-63 Score=460.86 Aligned_cols=204 Identities=29% Similarity=0.458 Sum_probs=183.7
Q ss_pred ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCC
Q psy2473 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGA 57 (213)
Q Consensus 5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~ 57 (213)
++|+++|++|||||||||||||++|+||||||| +..| ||||| ||||||||+|+
T Consensus 130 ~~i~~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~yLLEKSRVv~q~~gERnfHIFYqllaG~ 209 (697)
T 1lkx_A 130 ERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQMLKGL 209 (697)
T ss_dssp HHHHHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEEEEECTTCCEEEEEEEEECCCGGGGTCCCTTCCCBHHHHHHHTTS
T ss_pred ccHHHHHHhcchHHHHhcCcccCCCCCcchhheeEEEEECCCCCEeeeeeeeeeccCceeeeecCCCCceeehhHHhcCC
Confidence 478999999999999999999999999999999 5555 99999 99999999999
Q ss_pred CHHHHhhcccC-CCcccccccCCCCC-CCCCchHHHHHHHHHHHHhcCCCcccee-------------------------
Q psy2473 58 TPEQRKEFILE-DPKTYLFLSNGNLP-VPGVDDAVEFQATVQAMNIMGMTNEDYS------------------------- 110 (213)
Q Consensus 58 ~~~~~~~l~L~-~~~~~~yl~~~~~~-~~~~~d~~~f~~l~~al~~lg~~~~e~~------------------------- 110 (213)
+++++++|+|. ++++|+||+++++. +++++|+++|+.++.||++|||+++|+.
T Consensus 210 ~~~~~~~l~L~~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~ 289 (697)
T 1lkx_A 210 SQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRT 289 (697)
T ss_dssp CHHHHHHHTCCSCGGGSHHHHHTTCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEEETTC--
T ss_pred CHHHHHHhcCCCChhhCccccCCCCcccCCCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccceEeecccccC
Confidence 99999999998 99999999998765 7899999999999999999999999886
Q ss_pred ----eecCChHHHHHHHHHhCCCHHHHHhhhhcceEeeC----ceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2473 111 ----ASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVG----RDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRIN 182 (213)
Q Consensus 111 ----~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~----~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN 182 (213)
+.+.+++.++.+|+||||++++|.++|+++++.++ +|.+++|++++||..+||||||+||+|||+|||++||
T Consensus 290 ~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~g~~~e~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN 369 (697)
T 1lkx_A 290 GTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKIN 369 (697)
T ss_dssp --CEEEESSHHHHHHHHHHHTSCHHHHHHHHHBCC----------CCCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceeCCHHHHHHHHHhhCCCHHHHHHHHhccEEeeccCCCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcccccCcceeeecceeeeeeccCCCccCC
Q psy2473 183 RSLDRTKRQVYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 183 ~~l~~~~~~~~~~~~d~~GilDifGFE~~~~ 213 (213)
.+|.+.... ..+||||||||||+|++
T Consensus 370 ~~l~~~~~~-----~~~IGvLDI~GFE~f~~ 395 (697)
T 1lkx_A 370 TIINCTTEK-----GPVIGILDIYGFEVFQN 395 (697)
T ss_dssp HHHCCCSCC-----CCEEEEEECCCCCCCSS
T ss_pred hhcCCCCCC-----ceeEEeeccccccccCc
Confidence 999875432 24799999999999974
No 2
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=1.8e-62 Score=466.14 Aligned_cols=205 Identities=39% Similarity=0.608 Sum_probs=186.9
Q ss_pred cccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcC
Q psy2473 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSG 56 (213)
Q Consensus 4 ~~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g 56 (213)
.++|+++|++|||||||||||||++|+||||||| +..| ||||| ||||||||+|
T Consensus 212 ~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLlaG 291 (837)
T 1kk8_A 212 EGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSN 291 (837)
T ss_dssp CCCHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSSEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHTSC
T ss_pred cccHHHHHHHHHHHHHHhcCccCCCCCCCCCceeEEEEEECCCCCEeeeEEEEEeccCceeeeecCCCCceeehHHHHcC
Confidence 3689999999999999999999999999999999 5555 99999 9999999999
Q ss_pred CCHHHHhhccc-CCCcccccccCCCCCCCCCchHHHHHHHHHHHHhcCCCcccee-------------------------
Q psy2473 57 ATPEQRKEFIL-EDPKTYLFLSNGNLPVPGVDDAVEFQATVQAMNIMGMTNEDYS------------------------- 110 (213)
Q Consensus 57 ~~~~~~~~l~L-~~~~~~~yl~~~~~~~~~~~d~~~f~~l~~al~~lg~~~~e~~------------------------- 110 (213)
++++++++|+| .++++|+||++++..+++++|+++|+.++.||++|||+++|+.
T Consensus 292 ~~~~~~~~l~L~~~~~~y~yL~~g~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilAaILhLGNi~F~~~~~~~~ 371 (837)
T 1kk8_A 292 AIPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQ 371 (837)
T ss_dssp SSGGGHHHHTCCSCGGGCTTTCSSCSCBTTBCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEC----CC
T ss_pred CCHHHHHHhCCCCChhhcccccCCCcccCCcChHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHhhccceEEecCCCCc
Confidence 99999999999 6999999999998778999999999999999999999999987
Q ss_pred eecCChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC
Q psy2473 111 ASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKR 190 (213)
Q Consensus 111 ~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~ 190 (213)
+.+.+++.++.+|+||||++++|.++|+++++.+++|.+++|++++||..+||||||+||+|||+|||++||.+|.+...
T Consensus 372 ~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~ 451 (837)
T 1kk8_A 372 AESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAK 451 (837)
T ss_dssp CEESCSHHHHHHHHHHTSCHHHHHHHHHSCEEC----CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred cccCCHHHHHHHHHHHCCCHHHHHHHhcCcEEEcCCceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999985432
Q ss_pred cceeeecceeeeeeccCCCccCC
Q psy2473 191 QVYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 191 ~~~~~~~d~~GilDifGFE~~~~ 213 (213)
. ..+||||||||||+|++
T Consensus 452 ~-----~~~IGvLDI~GFE~f~~ 469 (837)
T 1kk8_A 452 R-----NYYIGVLDIAGFEIFDF 469 (837)
T ss_dssp C-----CEEEEEEECCCCCCCSS
T ss_pred C-----cceEEEEecCCcccccc
Confidence 2 23899999999999974
No 3
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=1.9e-62 Score=463.99 Aligned_cols=204 Identities=26% Similarity=0.455 Sum_probs=190.5
Q ss_pred ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCC
Q psy2473 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGA 57 (213)
Q Consensus 5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~ 57 (213)
.+|+++|++|||||||||||||++|+||||||| +..| ||||| ||||||||+|+
T Consensus 190 ~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLlag~ 269 (795)
T 1w7j_A 190 ANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASA 269 (795)
T ss_dssp SCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHhcCccCCCCCCccccceEEEEEECCCCCEeeeeceEEecccceEeccCCCCCchHhHHHHHcCC
Confidence 479999999999999999999999999999999 5555 99999 99999999999
Q ss_pred CHHHHhhcccCCCcccccccCCCCC-CCCCchHHHHHHHHHHHHhcCCCcccee------------------------ee
Q psy2473 58 TPEQRKEFILEDPKTYLFLSNGNLP-VPGVDDAVEFQATVQAMNIMGMTNEDYS------------------------AS 112 (213)
Q Consensus 58 ~~~~~~~l~L~~~~~~~yl~~~~~~-~~~~~d~~~f~~l~~al~~lg~~~~e~~------------------------~~ 112 (213)
+++++++|+|.++.+|+||+++++. +++++|+++|+.++.||++|||+++|+. +.
T Consensus 270 ~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~Am~~lG~s~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~ 349 (795)
T 1w7j_A 270 ALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCA 349 (795)
T ss_dssp TSGGGGGGCCCCTTTSHHHHTTSCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCEEEETTEEE
T ss_pred CHHHHHHccCCChHhCccccCCCCCcCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceEeecCCccee
Confidence 9999999999999999999999875 8999999999999999999999999987 33
Q ss_pred c-CChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCc
Q psy2473 113 L-PDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 191 (213)
Q Consensus 113 ~-~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~~ 191 (213)
+ .+++.++.+|+||||++++|.++|+++++.+++|.+++|++++||..+||||||+||+|||+|||++||.+|.+....
T Consensus 350 v~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~~ 429 (795)
T 1w7j_A 350 IPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQ 429 (795)
T ss_dssp CCTTCHHHHHHHHHHTCCHHHHHHHHSEEEEECSSCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCC
T ss_pred ecCChHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc
Confidence 4 678899999999999999999999999999999999999999999999999999999999999999999999976543
Q ss_pred ceeeecceeeeeeccCCCccCC
Q psy2473 192 VYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 192 ~~~~~~d~~GilDifGFE~~~~ 213 (213)
..+||||||||||+|++
T Consensus 430 -----~~~IGvLDI~GFE~f~~ 446 (795)
T 1w7j_A 430 -----HSFIGVLDIYGFETFEI 446 (795)
T ss_dssp -----SEEEEEEECCCCCCCSS
T ss_pred -----cceEEeeccCcccccCc
Confidence 24799999999999964
No 4
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=2.4e-62 Score=461.85 Aligned_cols=204 Identities=40% Similarity=0.611 Sum_probs=184.5
Q ss_pred ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCC
Q psy2473 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGA 57 (213)
Q Consensus 5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~ 57 (213)
++|+++|+++||||||||||||++|+||||||| +..| ||||| ||||||||+|+
T Consensus 214 ~~ve~~il~snpiLEAFGNAkT~rNdNSSRFGK~i~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERnfHIFYqLlaG~ 293 (783)
T 4db1_A 214 GTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQILSNK 293 (783)
T ss_dssp SCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSBEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHHTCS
T ss_pred ccHHHHHHHhHHHHHhccCcccCCCCCCCccceeEEEEECCCCCEeeeEEEEeecccceeeccCCCCCcchhHHHHHcCC
Confidence 579999999999999999999999999999999 5555 99999 99999999999
Q ss_pred CHHHHhhcccC-CCcccccccCCCCCCCCCchHHHHHHHHHHHHhcCCCcccee-------------------------e
Q psy2473 58 TPEQRKEFILE-DPKTYLFLSNGNLPVPGVDDAVEFQATVQAMNIMGMTNEDYS-------------------------A 111 (213)
Q Consensus 58 ~~~~~~~l~L~-~~~~~~yl~~~~~~~~~~~d~~~f~~l~~al~~lg~~~~e~~-------------------------~ 111 (213)
+++++++|+|. ++.+|+||+++...+++++|+++|+.++.||++|||+++|+. +
T Consensus 294 ~~~~~~~l~L~~~~~~y~yl~~g~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~ 373 (783)
T 4db1_A 294 KPELLDMLLITNNPYDYAFISQGETTVASIDDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQA 373 (783)
T ss_dssp SHHHHHHTTCCSCGGGCGGGCSSCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEECTTSSCE
T ss_pred CHHHHHHhccCCCHHHCccccCCCcccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceeeccCCCccc
Confidence 99999999995 899999999998779999999999999999999999999987 4
Q ss_pred ecCChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCc
Q psy2473 112 SLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 191 (213)
Q Consensus 112 ~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~~ 191 (213)
.+.+.+.++.+|+||||++++|.++|+++++.+++|.++++++++||..+||||||+||+|||+|||++||.+|.+....
T Consensus 374 ~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~i~~~~e~v~~~~~~~qA~~~rdalAK~lY~rLF~wlV~~IN~~l~~~~~~ 453 (783)
T 4db1_A 374 EPDGTEEADKSAYLMGLNSADLLKGLCHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETKQPR 453 (783)
T ss_dssp EESCCHHHHHHHHHTTCCHHHHHHHHHSCC------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCC
T ss_pred ccCChHHHHHHHHHhCCCHHHHHHhhcceEEEeCCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999975332
Q ss_pred ceeeecceeeeeeccCCCccCC
Q psy2473 192 VYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 192 ~~~~~~d~~GilDifGFE~~~~ 213 (213)
..+||||||||||+|++
T Consensus 454 -----~~~IGvLDI~GFE~f~~ 470 (783)
T 4db1_A 454 -----QYFIGVLDIAGFEIFDF 470 (783)
T ss_dssp -----SEEEEEEECCCCCCCSS
T ss_pred -----CceEEEecccccccccc
Confidence 23799999999999974
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=6.3e-62 Score=457.96 Aligned_cols=203 Identities=38% Similarity=0.600 Sum_probs=190.4
Q ss_pred ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCC
Q psy2473 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGA 57 (213)
Q Consensus 5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~ 57 (213)
++|+++|++|||||||||||||++|+||||||| +..| ||||| ||||||||+|+
T Consensus 209 ~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~yLLEKSRVv~q~~gERnfHIFYqLlaG~ 288 (770)
T 1w9i_A 209 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA 288 (770)
T ss_dssp CHHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHhCCCcCCCCCCcCCcceEEEEEECCCCCEeeeEEEEEeccCceeecccCCCCcchhHHHHhcCC
Confidence 579999999999999999999999999999999 5555 99999 99999999999
Q ss_pred CHHHHhhcccCCCccccc-ccCCCCCCCCCchHHHHHHHHHHHHhcCCCcccee------------------------ee
Q psy2473 58 TPEQRKEFILEDPKTYLF-LSNGNLPVPGVDDAVEFQATVQAMNIMGMTNEDYS------------------------AS 112 (213)
Q Consensus 58 ~~~~~~~l~L~~~~~~~y-l~~~~~~~~~~~d~~~f~~l~~al~~lg~~~~e~~------------------------~~ 112 (213)
+++++++|+|.++.+|+| +++++..+++++|+++|+.++.||++|||+++|+. +.
T Consensus 289 ~~~~~~~l~L~~~~~y~yll~~g~~~~~~~dD~~~f~~~~~Am~~lGf~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~ 368 (770)
T 1w9i_A 289 TAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAV 368 (770)
T ss_dssp CHHHHHHHTCCCGGGCTTTSSSSCCCCTTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCCEECSSSSEE
T ss_pred CHHHHHHhCCCChhhccccccCCccccCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCceEecCCCCccc
Confidence 999999999999999999 88888778999999999999999999999999987 45
Q ss_pred cCChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCcc
Q psy2473 113 LPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQV 192 (213)
Q Consensus 113 ~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~~~ 192 (213)
+.+.+.++.+|+||||++++|.++|+++++.+++|.+++|++++||..+||||||+||+|||+|||++||.+|.....
T Consensus 369 ~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~-- 446 (770)
T 1w9i_A 369 LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERK-- 446 (770)
T ss_dssp CSCCHHHHHHHHHHTCCHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCC--
T ss_pred cCChHHHHHHHHHhCCCHHHHHHHhhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--
Confidence 678899999999999999999999999999999999999999999999999999999999999999999999985433
Q ss_pred eeeecceeeeeeccCCCccCC
Q psy2473 193 YFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 193 ~~~~~d~~GilDifGFE~~~~ 213 (213)
..+||||||||||+|++
T Consensus 447 ----~~~IGvLDI~GFE~F~~ 463 (770)
T 1w9i_A 447 ----AYFIGVLDIYGFEIFKV 463 (770)
T ss_dssp ----SEEEEEEECCCCCCCSS
T ss_pred ----CCeeeeccCcccccccc
Confidence 34899999999999964
No 6
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=3.4e-61 Score=455.26 Aligned_cols=203 Identities=27% Similarity=0.435 Sum_probs=175.8
Q ss_pred ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCC
Q psy2473 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGA 57 (213)
Q Consensus 5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~ 57 (213)
++|+++|++|||||||||||||++|+||||||| +..| ||||| ||||||||+|+
T Consensus 172 ~~ie~~il~snpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLlaG~ 251 (784)
T 2v26_A 172 QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGA 251 (784)
T ss_dssp ----CHHHHTHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCCGGGTCCCTTCCSBHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHHHhCCCcCCCCCCcchhheEEEEEEecCCcEeeeeeeeeeccCCeEeeecCCCCcchhhHHHHcCC
Confidence 468999999999999999999999999999999 5555 99999 99999999999
Q ss_pred CHHHHhhcccCCCcccccccCCCC---------------------------CCCCCchHHHHHHHHHHHHhcCCCcccee
Q psy2473 58 TPEQRKEFILEDPKTYLFLSNGNL---------------------------PVPGVDDAVEFQATVQAMNIMGMTNEDYS 110 (213)
Q Consensus 58 ~~~~~~~l~L~~~~~~~yl~~~~~---------------------------~~~~~~d~~~f~~l~~al~~lg~~~~e~~ 110 (213)
+++++++|+|.++++|+||+++++ ..++++|+++|+.++.||++|||+++|+.
T Consensus 252 ~~~~~~~l~L~~~~~y~yL~~g~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Am~~lG~~~~e~~ 331 (784)
T 2v26_A 252 SEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKL 331 (784)
T ss_dssp CHHHHHHTTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CHHHHHHcCCCChhhCccccCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHcCCCHHHHH
Confidence 999999999999999999998763 24578999999999999999999999987
Q ss_pred --------------------------eec--CChHHHHHHHHHhCCCHHHHHhhhhcceEe-----eCceeEeecCCHHH
Q psy2473 111 --------------------------ASL--PDNTVAQKIAKLLGLSITEMTKAFLKPRIK-----VGRDFVTKSQTKEQ 157 (213)
Q Consensus 111 --------------------------~~~--~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~-----~~~e~v~~~~~~~~ 157 (213)
+.+ .+.+.++.+|+||||++++|.++|+++++. ++||.+++|++++|
T Consensus 332 ~i~~ilaaILhLGNi~F~~~~~~~~~~~v~~~~~~~l~~~a~LLgv~~~~L~~aL~~r~~~t~~g~~~ge~i~~~l~~~q 411 (784)
T 2v26_A 332 DLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQ 411 (784)
T ss_dssp HHHHHHHHHHHHHTCCEEECTTTTSSEEECGGGHHHHHHHHHHHTCCHHHHHHHHHEEEC-----------CEEECCHHH
T ss_pred HHHHHHHHHHhcccceeeeccCCCCccccccCCHHHHHHHHHHhCCCHHHHHHHHhhcEEeccccCCCCCeEeecCCHHH
Confidence 122 246789999999999999999999999887 67999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCcceeeecceeeeeeccCCCccCC
Q psy2473 158 VEFAVEAISKACYERMFRWLVNRINRSLDRTKRQVYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 158 A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~~~~~~~~d~~GilDifGFE~~~~ 213 (213)
|..+||||||+||+|||+|||++||.+|...... .+||||||||||+|++
T Consensus 412 A~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~~~------~~IGvLDI~GFE~f~~ 461 (784)
T 2v26_A 412 ANNARDALAKTVYSHLFDHVVNRVNQCFPFETSS------YFIGVLDIAGFEYFEH 461 (784)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCS------EEEEEEECCCCCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc------ceeeecccCCcccCCc
Confidence 9999999999999999999999999999764322 3799999999999974
No 7
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=9.1e-61 Score=462.63 Aligned_cols=203 Identities=37% Similarity=0.565 Sum_probs=190.1
Q ss_pred ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCC
Q psy2473 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGA 57 (213)
Q Consensus 5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~ 57 (213)
++|+++|++|||||||||||||++|+||||||| +..| ||||| ||||||||+|+
T Consensus 209 ~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHIFYqll~g~ 288 (1010)
T 1g8x_A 209 GVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA 288 (1010)
T ss_dssp SHHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCCBHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHhCCCcCCCCCCccccceEEEEEECCCCCCcceEEEEEEcCCceeeeecCCCCcchhHHHHHcCC
Confidence 589999999999999999999999999999999 5555 99999 99999999999
Q ss_pred CHHHHhhcccCCCcccccccCCCCC-CCCCchHHHHHHHHHHHHhcCCCcccee------------------------ee
Q psy2473 58 TPEQRKEFILEDPKTYLFLSNGNLP-VPGVDDAVEFQATVQAMNIMGMTNEDYS------------------------AS 112 (213)
Q Consensus 58 ~~~~~~~l~L~~~~~~~yl~~~~~~-~~~~~d~~~f~~l~~al~~lg~~~~e~~------------------------~~ 112 (213)
+++++++|+|.++..|+||+++++. +++++|+++|+.++.||++|||+++|+. +.
T Consensus 289 ~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~ 368 (1010)
T 1g8x_A 289 TAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAV 368 (1010)
T ss_dssp CHHHHHHHTCCCGGGCGGGSSSSCCCCBTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCCCBCCTTSSCB
T ss_pred CHHHHHHhCCCChHhcchhcCCCccccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccceEEecCCCccc
Confidence 9999999999999999999999854 8899999999999999999999999987 35
Q ss_pred cCChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCcc
Q psy2473 113 LPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQV 192 (213)
Q Consensus 113 ~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~~~ 192 (213)
+.+++.++.+|+||||++++|.++|+++++.+++|.+++|++++||..+||||||+||+|||+|||++||.+|.+..
T Consensus 369 ~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF~wlV~~IN~~l~~~~--- 445 (1010)
T 1g8x_A 369 LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCSER--- 445 (1010)
T ss_dssp CSCCHHHHHHHHHHTSCHHHHHHHHHSCEEESSSSEEECCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS---
T ss_pred cCChHHHHHHHHHHCCCHHHHHHHHhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999998644
Q ss_pred eeeecceeeeeeccCCCccCC
Q psy2473 193 YFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 193 ~~~~~d~~GilDifGFE~~~~ 213 (213)
...+||||||||||+|++
T Consensus 446 ---~~~~IgvLDI~GFE~f~~ 463 (1010)
T 1g8x_A 446 ---KAYFIGVLDISGFEIFKV 463 (1010)
T ss_dssp ---CSEEEEEEECCCCCCCSS
T ss_pred ---cCceeeeccCcccccCCc
Confidence 134899999999999963
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=7.3e-61 Score=466.39 Aligned_cols=204 Identities=26% Similarity=0.455 Sum_probs=186.3
Q ss_pred ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCC
Q psy2473 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGA 57 (213)
Q Consensus 5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~ 57 (213)
.+|+++|++|||||||||||||++|+||||||| +..| ||||| ||||||||+|+
T Consensus 190 ~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEKsRVv~q~~~ERnfHIFYqllag~ 269 (1080)
T 2dfs_A 190 ANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASA 269 (1080)
T ss_dssp TCTHHHHHHHHHHHHHHHEEEETTEEEEECSEEEEEEEECTTCCEEEEEEEEECCCCGGGTCCCTTCCSBHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHhcCCcCCCCCCccccceeEEEEECCCCCEeeecceeEeecCceeeccCCCCCcchhHHHHHcCC
Confidence 478999999999999999999999999999999 5555 99999 99999999999
Q ss_pred CHHHHhhcccCCCcccccccCCCCC-CCCCchHHHHHHHHHHHHhcCCCcccee------------------------ee
Q psy2473 58 TPEQRKEFILEDPKTYLFLSNGNLP-VPGVDDAVEFQATVQAMNIMGMTNEDYS------------------------AS 112 (213)
Q Consensus 58 ~~~~~~~l~L~~~~~~~yl~~~~~~-~~~~~d~~~f~~l~~al~~lg~~~~e~~------------------------~~ 112 (213)
+++++++|+|.++.+|+||+++++. +++++|.++|..++.||++|||+++|+. +.
T Consensus 270 ~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~ 349 (1080)
T 2dfs_A 270 ALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCA 349 (1080)
T ss_dssp TSSGGGGTCCCCTTTCTTTSTTSCCSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEETTTEEE
T ss_pred ChHHHHHccCCCHHhcCcccCCCCCCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceEEecCCccee
Confidence 9999999999999999999999875 8999999999999999999999999987 33
Q ss_pred c-CChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCc
Q psy2473 113 L-PDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 191 (213)
Q Consensus 113 ~-~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~~ 191 (213)
+ .+++.++.+|+||||++++|.++|+++++.+++|.+++|++++||..+||||||+||++||+|||.+||.+|.+....
T Consensus 350 ~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~ 429 (1080)
T 2dfs_A 350 IPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVKQ 429 (1080)
T ss_dssp CCSSCHHHHHHHHHHTCCHHHHHHHHHEEEECC----EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCC
T ss_pred ecCChHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3 678899999999999999999999999999999999999999999999999999999999999999999999976543
Q ss_pred ceeeecceeeeeeccCCCccCC
Q psy2473 192 VYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 192 ~~~~~~d~~GilDifGFE~~~~ 213 (213)
..+||||||||||+|++
T Consensus 430 -----~~~IgvLDI~GFE~f~~ 446 (1080)
T 2dfs_A 430 -----HSFIGVLDIYGFETFEI 446 (1080)
T ss_dssp -----CEEEEEEEECCCCCCSS
T ss_pred -----CceEEeeccCCccccCc
Confidence 24899999999999963
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=8.9e-61 Score=462.82 Aligned_cols=204 Identities=50% Similarity=0.785 Sum_probs=189.2
Q ss_pred ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCC
Q psy2473 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGA 57 (213)
Q Consensus 5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~ 57 (213)
++|+++|++|||||||||||||++|+||||||| +..| ||||| ||||||||+|+
T Consensus 187 ~~ie~~il~~npiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEksRvv~q~~~ERnfHIFYqll~g~ 266 (995)
T 2ycu_A 187 GELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDECSFHIFYQLLGGA 266 (995)
T ss_dssp C-CCSTTTSHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCCBHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHhcCccCCCCCCCCccceEEEEEECCCCCEeeeEEEEEeccCCeeeccCCCCCcchhHHHHHcCC
Confidence 578999999999999999999999999999999 5555 99999 99999999999
Q ss_pred CHHHHhhcccCCCcccccccCCCCCCCCCchHHHHHHHHHHHHhcCCCcccee-------------------------ee
Q psy2473 58 TPEQRKEFILEDPKTYLFLSNGNLPVPGVDDAVEFQATVQAMNIMGMTNEDYS-------------------------AS 112 (213)
Q Consensus 58 ~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~d~~~f~~l~~al~~lg~~~~e~~-------------------------~~ 112 (213)
+++++++|+|.++..|+||++++..+++ +|+++|+.++.||++|||+++|+. +.
T Consensus 267 ~~~~~~~l~L~~~~~y~yl~~~~~~~~~-dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhlGni~F~~~~~~~~~~ 345 (995)
T 2ycu_A 267 GEQLKADLLLEPCSHYRFLTNGPSSSPG-QERELFQETLESLRVLGFSHEEIISMLRMVSAVLQFGNIALKRERNTDQAT 345 (995)
T ss_dssp CHHHHHHTTCCCGGGCTTSTTCSCSSTT-THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHGGGCCCEECSSSCCEE
T ss_pred CHHHHHHcCCCChHHcccccCCccccCC-cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceEeecCCCcccc
Confidence 9999999999999999999999877888 999999999999999999999987 45
Q ss_pred cCChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCcc
Q psy2473 113 LPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQV 192 (213)
Q Consensus 113 ~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~~~ 192 (213)
+.+++.++.+|+||||++++|.++|+++++.+++|.+++|++++||..+||||||+||+|||+|||.+||.+|.+..+.
T Consensus 346 ~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN~~l~~~~~~- 424 (995)
T 2ycu_A 346 MPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQADFALEALAKATYERLFRWLVLRLNRALDRSPRQ- 424 (995)
T ss_dssp CSCCHHHHHHHHHTTCCHHHHHHHHHSCEEESSSSEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCC-
T ss_pred cCChHHHHHHHHHHCCCHHHHHHHhcCcEEEcCCceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-
Confidence 6788999999999999999999999999999999999999999999999999999999999999999999999864431
Q ss_pred eeeecceeeeeeccCCCccCC
Q psy2473 193 YFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 193 ~~~~~d~~GilDifGFE~~~~ 213 (213)
...+||||||||||+|++
T Consensus 425 ---~~~~IgvLDI~GFE~f~~ 442 (995)
T 2ycu_A 425 ---GASFLGILDIAGFEIFQL 442 (995)
T ss_dssp ---CSEEEEEEECCCBCCCSS
T ss_pred ---ccceEEEecccccccccc
Confidence 124899999999999963
No 10
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=2.1e-60 Score=469.11 Aligned_cols=206 Identities=52% Similarity=0.808 Sum_probs=189.5
Q ss_pred cccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcC
Q psy2473 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSG 56 (213)
Q Consensus 4 ~~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g 56 (213)
.++|+++|++|||||||||||||++|+||||||| +..| ||||| ||||||||+|
T Consensus 216 ~~~~~~~il~~npileaFGnAkT~rN~NSSRfgk~~~i~f~~~g~i~ga~i~~ylLEksRv~~q~~~ErnfhiFYqll~g 295 (1184)
T 1i84_S 216 YGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLIAG 295 (1184)
T ss_dssp CCSHHHHHHHHHHHHTTTTEEEETTEEEEECSCEEEEEEECSSSCEEEEEEEECCCCCGGGSCCCTTCCCCTHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCCcCCCCccccccceeEEEEECCCCCEeeeEEeEeecCCceeeeecCCCCchhhHHHHHcC
Confidence 4689999999999999999999999999999999 5555 99999 9999999999
Q ss_pred CCHHHHhhcccCCCcccccccCCCCCCCCCchHHHHHHHHHHHHhcCCCcccee-------------------------e
Q psy2473 57 ATPEQRKEFILEDPKTYLFLSNGNLPVPGVDDAVEFQATVQAMNIMGMTNEDYS-------------------------A 111 (213)
Q Consensus 57 ~~~~~~~~l~L~~~~~~~yl~~~~~~~~~~~d~~~f~~l~~al~~lg~~~~e~~-------------------------~ 111 (213)
++++++++|+|.++.+|+||++++..+++++|.++|..++.||++|||+++|+. +
T Consensus 296 ~~~~~~~~l~l~~~~~~~yl~~~~~~~~~~~d~~~f~~~~~a~~~lg~~~~e~~~i~~ilaaiLhlGni~f~~~~~~~~~ 375 (1184)
T 1i84_S 296 ASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQA 375 (1184)
T ss_dssp CCHHHHHHTTCCCTTSCSSCTTSSCCCTTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTTCCCBCCTTTSCC
T ss_pred CCHHHHHHcCCCChHhCCccCCCCcCCCCCChHHHHHHHHHHHHhceeCHHHHHHHHHHHHHHHhhcCceeeccCCCcCc
Confidence 999999999999999999999998889999999999999999999999999987 4
Q ss_pred ecCChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCc
Q psy2473 112 SLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 191 (213)
Q Consensus 112 ~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~~ 191 (213)
.+.+++.++.+|.||||++++|.++|+++++.+++|.+++|++++||..+||||||+||++||+|||.+||.+|.+....
T Consensus 376 ~~~~~~~~~~~a~lLg~~~~~l~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~lY~~lF~wlv~~iN~~l~~~~~~ 455 (1184)
T 1i84_S 376 SMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQ 455 (1184)
T ss_dssp BCCCSHHHHHHHHHTTSCHHHHHHHHHSCCCCCTTSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC-----
T ss_pred ccCChHHHHHHHHHHCCCHHHHHHHhcCcEEEeCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccC
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999864222
Q ss_pred ceeeecceeeeeeccCCCccCC
Q psy2473 192 VYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 192 ~~~~~~d~~GilDifGFE~~~~ 213 (213)
. ..+||||||||||+|.+
T Consensus 456 ~----~~~IgvLDi~GFE~f~~ 473 (1184)
T 1i84_S 456 G----ASFLGILDIAGFEIFEI 473 (1184)
T ss_dssp -----CEEEEEEECCCCCCCSS
T ss_pred C----cceEEEeecCCcCCCCc
Confidence 1 24799999999999863
No 11
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=8.7e-60 Score=455.24 Aligned_cols=203 Identities=27% Similarity=0.419 Sum_probs=176.3
Q ss_pred ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCC
Q psy2473 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGA 57 (213)
Q Consensus 5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~ 57 (213)
.+++++|+++||||||||||||++|+||||||| +..| ||||| ||||||||+|+
T Consensus 176 ~~ie~~Il~snpiLEAFGNAKT~rNdNSSRFGK~iel~F~~~G~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLlaGa 255 (1052)
T 4anj_A 176 QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGA 255 (1052)
T ss_dssp --CTTHHHHTHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCSGGGTCCCTTCCSBHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHhccCCCCCCCCCcCCceeEEEEEECCCCCEEEEEEeccccccCceeecCCCCCCcccHHHHhcCC
Confidence 468899999999999999999999999999999 5555 99999 99999999999
Q ss_pred CHHHHhhcccCCCcccccccCCCC---------------------------CCCCCchHHHHHHHHHHHHhcCCCcccee
Q psy2473 58 TPEQRKEFILEDPKTYLFLSNGNL---------------------------PVPGVDDAVEFQATVQAMNIMGMTNEDYS 110 (213)
Q Consensus 58 ~~~~~~~l~L~~~~~~~yl~~~~~---------------------------~~~~~~d~~~f~~l~~al~~lg~~~~e~~ 110 (213)
+++++++|+|.++++|+||+++.. .++++||+++|..++.||++|||+++|+.
T Consensus 256 ~~~~r~~l~L~~~~~y~yL~qg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~ 335 (1052)
T 4anj_A 256 SEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKL 335 (1052)
T ss_dssp CHHHHHHHTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHcCCCChHhCchhcCCCccccccccchhhhcccccchhhccCCCccCCCcchHHHHHHHHHHHHHcCCCHHHHH
Confidence 999999999999999999998632 26789999999999999999999999987
Q ss_pred ----------------------------eecCChHHHHHHHHHhCCCHHHHHhhhhcceEe-----eCceeEeecCCHHH
Q psy2473 111 ----------------------------ASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIK-----VGRDFVTKSQTKEQ 157 (213)
Q Consensus 111 ----------------------------~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~-----~~~e~v~~~~~~~~ 157 (213)
+.+.+.+.++.+|+||||++++|.++|+++.+. +++|.+++|++++|
T Consensus 336 ~I~~iLAaILhLGNi~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aLt~r~~~~~~~~~~~e~i~~~l~~~q 415 (1052)
T 4anj_A 336 DLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQ 415 (1052)
T ss_dssp HHHHHHHHHHHHHTCCEEC-------CEECGGGHHHHHHHHHHTTCCHHHHHHHHHEEC-------------CEECCHHH
T ss_pred HHHHHHHHHHhhcceeEEecCCCCCCcccccCChHHHHHHHHHhCCCHHHHHHHHhhceeeecccccCceEEEecCCHHH
Confidence 123456789999999999999999999988764 57899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCcceeeecceeeeeeccCCCccCC
Q psy2473 158 VEFAVEAISKACYERMFRWLVNRINRSLDRTKRQVYFKLINRYGIILCFLFQSIVK 213 (213)
Q Consensus 158 A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~~~~~~~~d~~GilDifGFE~~~~ 213 (213)
|..+||||||+||++||+|||++||.+|.+.... .+||||||||||+|++
T Consensus 416 A~~~rDaLAK~LY~rLF~wiV~~IN~~l~~~~~~------~~IGILDI~GFE~f~~ 465 (1052)
T 4anj_A 416 ANNARDALAKTVYSHLFDHVVNRVNQCFPFETSS------YFIGVLDIAGFEYFEH 465 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCS------EEEEEEECCCCCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccc------ceEEEEecCCCccccc
Confidence 9999999999999999999999999999765432 3799999999999974
No 12
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=86.22 E-value=0.56 Score=32.70 Aligned_cols=48 Identities=13% Similarity=0.091 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-------hcccccCc-ceeeecceeeeeeccCCC
Q psy2473 161 AVEAISKACYERMFRWLVNRINR-------SLDRTKRQ-VYFKLINRYGIILCFLFQ 209 (213)
Q Consensus 161 ~rDalak~LY~~LF~wIV~~IN~-------~l~~~~~~-~~~~~~d~~GilDifGFE 209 (213)
++|+++..||..|+.-++-.|=. .+...-+. ....+.+..|+ ||||-.
T Consensus 7 t~~~~s~~Iy~nLl~~~i~dIv~~e~~~~k~l~~r~p~~k~y~~~~~~~l-DIfG~~ 62 (99)
T 3mhs_C 7 TIDSISNGILNNLLTTLIQDIVARETTQQQLLKTRYPDLRSYYFDPNGSL-DINGLQ 62 (99)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCCTTSCS-CTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceecCCCCc-ccCCCc
Confidence 68899999999999877654432 23222222 33444555665 999964
No 13
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=76.13 E-value=3.1 Score=26.84 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=32.0
Q ss_pred HHHHHHhcCCCcccee----------------eecCChHHHHHHHHHhCCCHHHHHhhhhc
Q psy2473 95 TVQAMNIMGMTNEDYS----------------ASLPDNTVAQKIAKLLGLSITEMTKAFLK 139 (213)
Q Consensus 95 l~~al~~lg~~~~e~~----------------~~~~~~~~l~~aA~LLgv~~~~L~~~L~~ 139 (213)
+..+....|+++++.. -...+.+.+..+|+.|||++++|...+..
T Consensus 19 l~~~R~~~gltq~elA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~~~~~~l~~~~~~ 79 (83)
T 3f6w_A 19 LLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDPYALLSKLEA 79 (83)
T ss_dssp HHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5555666777776655 12356788999999999999988776543
No 14
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=74.27 E-value=3.1 Score=25.44 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=15.5
Q ss_pred CChHHHHHHHHHhCCCHHHHH
Q psy2473 114 PDNTVAQKIAKLLGLSITEMT 134 (213)
Q Consensus 114 ~~~~~l~~aA~LLgv~~~~L~ 134 (213)
.+.+.+..+|+.||++++.|.
T Consensus 45 ~~~~~l~~i~~~l~~~~~~l~ 65 (68)
T 2r1j_L 45 PNGENLLALSKALQCSPDYLL 65 (68)
T ss_dssp CBHHHHHHHHHHTTSCHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHh
Confidence 356677788888888877764
No 15
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=73.36 E-value=3.6 Score=25.78 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=17.7
Q ss_pred CChHHHHHHHHHhCCCHHHHHh
Q psy2473 114 PDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 114 ~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
.+.+.+..+|+.|||+++.|..
T Consensus 45 ~~~~~l~~ia~~l~~~~~~l~~ 66 (76)
T 1adr_A 45 PNGENLLALSKALQCSPDYLLK 66 (76)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHHHHCcCHHHHhc
Confidence 4677888899999999888754
No 16
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=71.93 E-value=1.3 Score=29.95 Aligned_cols=43 Identities=12% Similarity=0.097 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCcccee---------------eecCChHHHHHHHHHhCCCHHHHH
Q psy2473 92 FQATVQAMNIMGMTNEDYS---------------ASLPDNTVAQKIAKLLGLSITEMT 134 (213)
Q Consensus 92 f~~l~~al~~lg~~~~e~~---------------~~~~~~~~l~~aA~LLgv~~~~L~ 134 (213)
+..+...+...|+++.+.. ....+.+.+..+|+.|||++++|.
T Consensus 26 ~~rLk~lR~~~glTq~eLA~~~GiS~~tis~iE~G~~~s~~~l~kIa~~L~v~~~~L~ 83 (88)
T 3t76_A 26 YNKLWKLLIDRDMKKGELREAVGVSKSTFAKLGKNENVSLTVLLAICEYLNCDFGDII 83 (88)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCHHHHHHHHHHHTCCGGGTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHh
Confidence 5677777888888876654 112366778888888888877664
No 17
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=71.89 E-value=4.2 Score=25.57 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCcccee----------------eecCChHHHHHHHHHhCCCHHHHHh
Q psy2473 94 ATVQAMNIMGMTNEDYS----------------ASLPDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 94 ~l~~al~~lg~~~~e~~----------------~~~~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
.+...+...|+++.+.. -...+.+.+..+|+.||++++.|..
T Consensus 14 ~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~la~~l~~~~~~l~~ 71 (77)
T 2b5a_A 14 TLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFR 71 (77)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHHhc
Confidence 35566666777765544 1234566778888888888877754
No 18
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=71.10 E-value=4.2 Score=25.67 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCcccee----------------ee-cCChHHHHHHHHHhCCCHHHHHh
Q psy2473 94 ATVQAMNIMGMTNEDYS----------------AS-LPDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 94 ~l~~al~~lg~~~~e~~----------------~~-~~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
.+...+...|++..+.. -. ..+.+.+..+|+.|||++++|..
T Consensus 11 ~l~~~r~~~g~sq~~lA~~~gis~~~i~~~e~g~~~~~~~~~l~~ia~~l~~~~~~l~~ 69 (78)
T 3b7h_A 11 HLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGISVHDFFD 69 (78)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHTCCHHHHTC
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHHhc
Confidence 35555666666665544 12 45667788888888888887753
No 19
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=68.47 E-value=4.8 Score=24.31 Aligned_cols=21 Identities=29% Similarity=0.388 Sum_probs=15.6
Q ss_pred CChHHHHHHHHHhCCCHHHHH
Q psy2473 114 PDNTVAQKIAKLLGLSITEMT 134 (213)
Q Consensus 114 ~~~~~l~~aA~LLgv~~~~L~ 134 (213)
.+.+.+..+|+.||++++.|.
T Consensus 41 ~~~~~l~~i~~~l~~~~~~l~ 61 (66)
T 2xi8_A 41 PSLQLALKIAYYLNTPLEDIF 61 (66)
T ss_dssp CCHHHHHHHHHHTTSCHHHHE
T ss_pred CCHHHHHHHHHHHCcCHHHHh
Confidence 456777888888888877764
No 20
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=67.45 E-value=2.3 Score=27.50 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=26.7
Q ss_pred HHHHHHhcCCCcccee----------------eecCChHHHHHHHHHhCCCHHHHHhhh
Q psy2473 95 TVQAMNIMGMTNEDYS----------------ASLPDNTVAQKIAKLLGLSITEMTKAF 137 (213)
Q Consensus 95 l~~al~~lg~~~~e~~----------------~~~~~~~~l~~aA~LLgv~~~~L~~~L 137 (213)
+...++..|+++.+.. -...+.+.+..+|+.|||++++|...|
T Consensus 17 l~~~r~~~gltq~~lA~~~gvs~~~is~~e~g~~~~~~~~~~~ia~~l~v~~~~l~~~l 75 (80)
T 3kz3_A 17 WEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEFSPSI 75 (80)
T ss_dssp HHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHhHHH
Confidence 4445556677765543 123456777788888888877665544
No 21
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=66.93 E-value=5.7 Score=27.02 Aligned_cols=44 Identities=20% Similarity=0.036 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCcccee----------------eecCChHHHHHHHHHhCCCHHHHHhh
Q psy2473 93 QATVQAMNIMGMTNEDYS----------------ASLPDNTVAQKIAKLLGLSITEMTKA 136 (213)
Q Consensus 93 ~~l~~al~~lg~~~~e~~----------------~~~~~~~~l~~aA~LLgv~~~~L~~~ 136 (213)
..++......|+++++.. -...+.+.+..+|+.|||++++|...
T Consensus 31 ~~lr~~R~~~gltq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~v~~~~l~~~ 90 (99)
T 3g5g_A 31 FVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEM 90 (99)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhcc
Confidence 346677777888877665 12356678888999999998888653
No 22
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=65.93 E-value=6.8 Score=25.08 Aligned_cols=42 Identities=21% Similarity=0.063 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCcccee----------------eecCChHHHHHHHHHhCCCHHHHHh
Q psy2473 94 ATVQAMNIMGMTNEDYS----------------ASLPDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 94 ~l~~al~~lg~~~~e~~----------------~~~~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
.++......|+++++.. -...+.+.+..+|..|||++++|..
T Consensus 15 ~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~v~~~~l~~ 72 (82)
T 3s8q_A 15 VIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFE 72 (82)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCBHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhc
Confidence 35555666677766554 1234667788888888888888754
No 23
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=63.45 E-value=5.8 Score=25.16 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=17.6
Q ss_pred CChHHHHHHHHHhCCCHHHHHhh
Q psy2473 114 PDNTVAQKIAKLLGLSITEMTKA 136 (213)
Q Consensus 114 ~~~~~l~~aA~LLgv~~~~L~~~ 136 (213)
.+.+.+..+|+.|||+.++|...
T Consensus 42 p~~~~l~~ia~~l~v~~~~l~~~ 64 (77)
T 2k9q_A 42 PVVVKYIAFLRSKGVDLNALFDR 64 (77)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHhCcCHHHHhCc
Confidence 34567888899999998887654
No 24
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=63.04 E-value=6.7 Score=26.99 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCcccee----------------eecCChHHHHHHHHHhCCCHHHHHh
Q psy2473 94 ATVQAMNIMGMTNEDYS----------------ASLPDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 94 ~l~~al~~lg~~~~e~~----------------~~~~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
.++......|+++.+.. -...+.+.+..+|+.|||+++.|..
T Consensus 13 ~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~la~~l~v~~~~l~~ 70 (114)
T 3op9_A 13 NLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVG 70 (114)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHTSSCCCHHHHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHhc
Confidence 34455555566665554 2346778999999999999998865
No 25
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=62.89 E-value=7.6 Score=23.66 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=13.5
Q ss_pred HHHHHHHhCCCHHHHHh
Q psy2473 119 AQKIAKLLGLSITEMTK 135 (213)
Q Consensus 119 l~~aA~LLgv~~~~L~~ 135 (213)
+..+|+.|||+++.|..
T Consensus 45 l~~la~~l~~~~~~l~~ 61 (69)
T 1r69_A 45 LPELASALGVSVDWLLN 61 (69)
T ss_dssp HHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHCcCHHHHhC
Confidence 78888888888877754
No 26
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=62.40 E-value=5.6 Score=26.45 Aligned_cols=43 Identities=9% Similarity=0.165 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCcccee----------------eecCChHHHHHHHHHhCCCHHHHHh
Q psy2473 93 QATVQAMNIMGMTNEDYS----------------ASLPDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 93 ~~l~~al~~lg~~~~e~~----------------~~~~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
..++..+...|+++.+.. -...+.+.+..+|+.|||+.+.|..
T Consensus 12 ~~lk~~r~~~glsq~~lA~~~gis~~~is~~e~G~~~p~~~~l~~ia~~l~v~~~~l~~ 70 (94)
T 2kpj_A 12 ENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLIE 70 (94)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHHHHHCcCHHHHhc
Confidence 345566666677765554 1234667888899999999888754
No 27
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=62.26 E-value=3.5 Score=25.73 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCCcccee----------------eecCChHHHHHHHHHhCCCHHHH
Q psy2473 93 QATVQAMNIMGMTNEDYS----------------ASLPDNTVAQKIAKLLGLSITEM 133 (213)
Q Consensus 93 ~~l~~al~~lg~~~~e~~----------------~~~~~~~~l~~aA~LLgv~~~~L 133 (213)
..+...+...|++..+.. -...+.+.+..+|+.|||+++.|
T Consensus 16 ~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~l~~~l~~~~~~l 72 (74)
T 1y7y_A 16 QRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPREL 72 (74)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTSCGGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHH
Confidence 346666777788865443 11233455566666666665543
No 28
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=60.54 E-value=7.5 Score=25.15 Aligned_cols=42 Identities=12% Similarity=-0.042 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCCcccee-------------eecCChHHHHHHHHHhCCCHHHHH
Q psy2473 93 QATVQAMNIMGMTNEDYS-------------ASLPDNTVAQKIAKLLGLSITEMT 134 (213)
Q Consensus 93 ~~l~~al~~lg~~~~e~~-------------~~~~~~~~l~~aA~LLgv~~~~L~ 134 (213)
..++.++..-|++..+.. ..-..+.....+|+.|||++++|.
T Consensus 12 ~ri~~~l~~~glT~~~LA~~~Gvs~stls~~~~~~~p~~~~~IA~aLgv~~~~L~ 66 (74)
T 1neq_A 12 ADVIAGLKKRKLSLSALSRQFGYAPTTLANALERHWPKGEQIIANALETKPEVIW 66 (74)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHSSCHHHHHHTTTSSCHHHHHHHHHHTTSCHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCccHHHHHHHHHCcCHHHHh
Confidence 445666666677665544 111345555568888888887763
No 29
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=60.41 E-value=3.3 Score=26.06 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=15.6
Q ss_pred cCChHHHHHHHHHhCCCHHHH
Q psy2473 113 LPDNTVAQKIAKLLGLSITEM 133 (213)
Q Consensus 113 ~~~~~~l~~aA~LLgv~~~~L 133 (213)
..+.+.+..+|+.|||++++|
T Consensus 47 ~~~~~~l~~ia~~l~v~~~~l 67 (73)
T 3omt_A 47 QPSLETLFDIAEALNVDVREL 67 (73)
T ss_dssp CCCHHHHHHHHHHHTSCGGGG
T ss_pred CCCHHHHHHHHHHHCcCHHHH
Confidence 356677888888888887665
No 30
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=59.19 E-value=9.4 Score=26.39 Aligned_cols=43 Identities=14% Similarity=0.036 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCcccee----------------eecCChHHHHHHHHHhCCCHHHHHh
Q psy2473 93 QATVQAMNIMGMTNEDYS----------------ASLPDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 93 ~~l~~al~~lg~~~~e~~----------------~~~~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
..++......|+++++.. -...+.+.+..+|+.|||+.++|..
T Consensus 24 ~~lr~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~~~~l~~ 82 (114)
T 3vk0_A 24 YNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLL 82 (114)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTTTCCCCCHHHHHHHHHHHTSCHHHHTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHhC
Confidence 346666677788876655 1234667888899999998887753
No 31
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=56.19 E-value=6.2 Score=24.22 Aligned_cols=17 Identities=18% Similarity=-0.029 Sum_probs=12.7
Q ss_pred HHHHHHHhCCCHHHHHh
Q psy2473 119 AQKIAKLLGLSITEMTK 135 (213)
Q Consensus 119 l~~aA~LLgv~~~~L~~ 135 (213)
+..+|+.|||+++.|..
T Consensus 47 l~~i~~~l~~~~~~l~~ 63 (71)
T 1zug_A 47 LFEIAMALNCDPVWLQY 63 (71)
T ss_dssp HHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHCCCHHHHhC
Confidence 77788888888777643
No 32
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=55.45 E-value=4.9 Score=25.19 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=13.4
Q ss_pred CChHHHHHHHHHhCCCHHHH
Q psy2473 114 PDNTVAQKIAKLLGLSITEM 133 (213)
Q Consensus 114 ~~~~~l~~aA~LLgv~~~~L 133 (213)
.+.+.+..+|+.|||+++.|
T Consensus 50 ~~~~~l~~ia~~l~~~~~~l 69 (76)
T 3bs3_A 50 PSLDMLVKVAELLNVDPRQL 69 (76)
T ss_dssp CCHHHHHHHHHHHTSCGGGG
T ss_pred CCHHHHHHHHHHHCcCHHHH
Confidence 45566777777777776654
No 33
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=55.09 E-value=14 Score=23.60 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=17.9
Q ss_pred cCChHHHHHHHHHhCCCHHHHHh
Q psy2473 113 LPDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 113 ~~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
..+.+.+..+|+.|||+.+.|..
T Consensus 50 ~p~~~~l~~ia~~l~v~~~~l~~ 72 (78)
T 3qq6_A 50 NPSIQFLEKVSAVLDVSVHTLLD 72 (78)
T ss_dssp CCBHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHCcCHHHHhC
Confidence 35567888889999998888754
No 34
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=54.13 E-value=13 Score=25.66 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=30.3
Q ss_pred HHHHHHhcCCCcccee----------------eecCChHHHHHHHHHhCCCHHHHHhh
Q psy2473 95 TVQAMNIMGMTNEDYS----------------ASLPDNTVAQKIAKLLGLSITEMTKA 136 (213)
Q Consensus 95 l~~al~~lg~~~~e~~----------------~~~~~~~~l~~aA~LLgv~~~~L~~~ 136 (213)
++......|+++.+.. -...+.+.+..+|+.|||++++|...
T Consensus 33 l~~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~~~~~~l~~la~~l~v~~~~l~~~ 90 (117)
T 3f52_A 33 LRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVLIE 90 (117)
T ss_dssp HHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCHHHHHhc
Confidence 5556666778776665 12356788999999999999887653
No 35
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=49.39 E-value=13 Score=25.94 Aligned_cols=43 Identities=26% Similarity=0.303 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCcccee----------------eecCChHHHHHHHHHhCCCHHHHHh
Q psy2473 93 QATVQAMNIMGMTNEDYS----------------ASLPDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 93 ~~l~~al~~lg~~~~e~~----------------~~~~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
..++......|+++.+.. ....+.+.+..+|..|||+++.|..
T Consensus 15 ~~lk~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~l~~ 73 (126)
T 3ivp_A 15 LAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFL 73 (126)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHhC
Confidence 345566666777776665 2246778999999999999998865
No 36
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=48.65 E-value=10 Score=25.48 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCcccee----------------eecCChHHHHHHHHHhCCCHHHHHhhhh
Q psy2473 94 ATVQAMNIMGMTNEDYS----------------ASLPDNTVAQKIAKLLGLSITEMTKAFL 138 (213)
Q Consensus 94 ~l~~al~~lg~~~~e~~----------------~~~~~~~~l~~aA~LLgv~~~~L~~~L~ 138 (213)
.++......|+++++.. -...+.. +..+|.+||++++.|...+.
T Consensus 34 ~lk~~R~~~glsq~elA~~lgvs~~~is~~E~G~~~p~~~-~~~l~~~l~~~~~~l~~~~~ 93 (99)
T 2ppx_A 34 RIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQP-ARAYLKIIAVDPEGTAAALR 93 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHH-HHHHHHHHHHCHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHH-HHHHHHHHCcCHHHHHHHHH
Confidence 34555566777765443 1122333 66777777777777766553
No 37
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=48.10 E-value=19 Score=24.15 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=19.3
Q ss_pred cCChHHHHHHHHHhCCCHHHHHh
Q psy2473 113 LPDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 113 ~~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
..+.+.+..+|..|||+++.|..
T Consensus 41 ~p~~~~l~~ia~~l~v~~~~l~~ 63 (111)
T 1b0n_A 41 NPSIQFLEKVSAVLDVSVHTLLD 63 (111)
T ss_dssp CCCHHHHHHHHHHHTCCHHHHHC
T ss_pred CCCHHHHHHHHHHHCcCHHHHhc
Confidence 45677899999999999998864
No 38
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=48.10 E-value=18 Score=25.77 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=20.2
Q ss_pred HHHHHHHHHhCCCHHHHHhhhhcc
Q psy2473 117 TVAQKIAKLLGLSITEMTKAFLKP 140 (213)
Q Consensus 117 ~~l~~aA~LLgv~~~~L~~~L~~~ 140 (213)
+.+...|+.|||++++|....-..
T Consensus 52 ~~l~~ia~~L~v~~~~l~~~~~~~ 75 (130)
T 3fym_A 52 GFIRKYASVVNIEPNQLIQAHQDE 75 (130)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTTTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 569999999999999998866543
No 39
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=46.65 E-value=20 Score=24.08 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=16.2
Q ss_pred CChHHHHHHHHHhCCCHHHHHh
Q psy2473 114 PDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 114 ~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
.+.+.+..+|+.|||+++.|..
T Consensus 58 ~~~~~l~~l~~~l~v~~~~ll~ 79 (104)
T 3cec_A 58 ITVDIAIRLGKALGNGPRLWLN 79 (104)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHHCcCHHHHHh
Confidence 4566778888888888876654
No 40
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=44.44 E-value=23 Score=24.22 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=18.7
Q ss_pred CChHHHHHHHHHhCCCHHHHHhh
Q psy2473 114 PDNTVAQKIAKLLGLSITEMTKA 136 (213)
Q Consensus 114 ~~~~~l~~aA~LLgv~~~~L~~~ 136 (213)
.+.+.+..+|+.|||+++.|...
T Consensus 54 ~s~~~~~kla~~lgvs~~~ll~~ 76 (104)
T 3trb_A 54 ITADTALRLAKFFGTTPEFWLNL 76 (104)
T ss_dssp CCHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHCcCHHHHhCC
Confidence 46778899999999998887654
No 41
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=43.29 E-value=25 Score=22.99 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=11.9
Q ss_pred CChHHHHHHHHHhCCCHH
Q psy2473 114 PDNTVAQKIAKLLGLSIT 131 (213)
Q Consensus 114 ~~~~~l~~aA~LLgv~~~ 131 (213)
.+.+.+..+|+.|||+++
T Consensus 48 ~~~~~~~~i~~~l~v~~~ 65 (94)
T 2ict_A 48 LTPEMAIKLSVVIGSSPQ 65 (94)
T ss_dssp CCHHHHHHHHHHTCSCHH
T ss_pred CCHHHHHHHHHHHCcCHH
Confidence 345666677777777766
No 42
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=43.04 E-value=24 Score=25.52 Aligned_cols=27 Identities=33% Similarity=0.423 Sum_probs=21.4
Q ss_pred cCChHHHHHHHHHhCCCHHHHHhhhhc
Q psy2473 113 LPDNTVAQKIAKLLGLSITEMTKAFLK 139 (213)
Q Consensus 113 ~~~~~~l~~aA~LLgv~~~~L~~~L~~ 139 (213)
..+.+.+..+|..||++++.|...+-.
T Consensus 107 ~ps~~~l~~la~~lgv~~~~l~~~~~~ 133 (141)
T 3kxa_A 107 SLQDKTVQKLANALGVSPLEVRAAFER 133 (141)
T ss_dssp CCCHHHHHHHHHHHTCCHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHCCCHHHHHHHhhh
Confidence 356778899999999999988876643
No 43
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=42.96 E-value=6.4 Score=25.87 Aligned_cols=42 Identities=26% Similarity=0.468 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCcccee----------------eecCChHHHHHHHHHhCCCHHHHH
Q psy2473 93 QATVQAMNIMGMTNEDYS----------------ASLPDNTVAQKIAKLLGLSITEMT 134 (213)
Q Consensus 93 ~~l~~al~~lg~~~~e~~----------------~~~~~~~~l~~aA~LLgv~~~~L~ 134 (213)
..+...+...|+++++.. -...+.+.+..+|+.|||+.++|.
T Consensus 16 ~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~la~~l~v~~~~l~ 73 (91)
T 1x57_A 16 KVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKD 73 (91)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBCCSSTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHc
Confidence 345566666677766554 123566778888888888887763
No 44
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=42.42 E-value=26 Score=24.38 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=18.8
Q ss_pred HHHHHHHHHhCCCHHHHHhhhhc
Q psy2473 117 TVAQKIAKLLGLSITEMTKAFLK 139 (213)
Q Consensus 117 ~~l~~aA~LLgv~~~~L~~~L~~ 139 (213)
..+..+|+.|||++++|...+-.
T Consensus 56 ~~l~~iA~~Lgv~~~~L~~~~~~ 78 (112)
T 2wus_R 56 SYIKRYSEFLELSPDEMLKLYEE 78 (112)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHHHHHHh
Confidence 46789999999999999876543
No 45
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=38.55 E-value=16 Score=22.31 Aligned_cols=19 Identities=16% Similarity=0.380 Sum_probs=10.0
Q ss_pred ChHHHHHHHHHhCCCHHHH
Q psy2473 115 DNTVAQKIAKLLGLSITEM 133 (213)
Q Consensus 115 ~~~~l~~aA~LLgv~~~~L 133 (213)
+.+.+..+|+.|||+++.|
T Consensus 51 ~~~~l~~la~~l~v~~~~l 69 (71)
T 2ewt_A 51 TVQRLAELADFYGVPVQEL 69 (71)
T ss_dssp CHHHHHHHHHHHTSCGGGG
T ss_pred CHHHHHHHHHHHCcCHHHH
Confidence 3445555555555555443
No 46
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=38.53 E-value=19 Score=24.49 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=18.7
Q ss_pred cCChHHHHHHHHHhCCCHHHHHh
Q psy2473 113 LPDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 113 ~~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
..+.+.+..+|+.|||+++.|..
T Consensus 50 ~~~~~~l~~la~~l~~~~~~l~~ 72 (113)
T 2eby_A 50 KLTTEMAFRLAKVFDTTVDFWLN 72 (113)
T ss_dssp CCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHCcCHHHHHc
Confidence 35677889999999999987765
No 47
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=38.50 E-value=10 Score=26.30 Aligned_cols=21 Identities=5% Similarity=0.143 Sum_probs=16.8
Q ss_pred cCChHHHHHHHHHhCCCHHHH
Q psy2473 113 LPDNTVAQKIAKLLGLSITEM 133 (213)
Q Consensus 113 ~~~~~~l~~aA~LLgv~~~~L 133 (213)
..+.+.+..+|+.|||++++|
T Consensus 62 ~ps~~~l~~ia~~l~v~~~~l 82 (111)
T 3mlf_A 62 NIKDSLLSKYMSAFNVKYDDI 82 (111)
T ss_dssp TCCHHHHHHHHHHHTCCGGGE
T ss_pred CCCHHHHHHHHHHhCcCHHHH
Confidence 456788899999999987765
No 48
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=37.08 E-value=12 Score=26.96 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCHHHHHhhh
Q psy2473 117 TVAQKIAKLLGLSITEMTKAF 137 (213)
Q Consensus 117 ~~l~~aA~LLgv~~~~L~~~L 137 (213)
..+.++|++||+++.++..+.
T Consensus 107 ~lLr~ia~~Lgls~~d~~~~~ 127 (133)
T 2h5n_A 107 ALWTLISTLCGLPTMTVMEAI 127 (133)
T ss_dssp HHHHHHHHHHTCCCCCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 468999999999988775443
No 49
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=36.69 E-value=14 Score=23.96 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=14.5
Q ss_pred CChHHHHHHHHHhCCCHHHHHh
Q psy2473 114 PDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 114 ~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
.+.+.+..+|+.|||+++.|..
T Consensus 57 ~~~~~l~~ia~~l~v~~~~l~~ 78 (92)
T 1lmb_3 57 LNAYNAALLAKILKVSVEEFSP 78 (92)
T ss_dssp CCHHHHHHHHHHHTSCGGGTCH
T ss_pred CCHHHHHHHHHHHCCCHHHHhh
Confidence 4456677777777777666544
No 50
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=33.64 E-value=23 Score=23.04 Aligned_cols=48 Identities=10% Similarity=0.054 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCCccceeeecCChHHHHHHHHHhCCCHHHHHhhhh
Q psy2473 89 AVEFQATVQAMNIMGMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKAFL 138 (213)
Q Consensus 89 ~~~f~~l~~al~~lg~~~~e~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~ 138 (213)
.+.|..+..-|...|+. -..|.....+.++.||..-|+|+++|.+.|-
T Consensus 13 v~~~P~~~~vf~~~G~~--C~gC~~a~~~tLeeA~~~hgiD~d~ll~eLn 60 (76)
T 2k53_A 13 LQMDRGTAPIFINNGMH--CLGCPSSMGESIEDACAVHGIDADKLVKELN 60 (76)
T ss_dssp HHHCGGGHHHHHHTTCC--CCSSCCCCCSBHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHCHHHHHHHHHcCCC--CCCCCccccccHHHHHHHcCCCHHHHHHHHH
Confidence 34566667777777775 1123344567799999999999999887763
No 51
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=33.34 E-value=23 Score=22.42 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=18.5
Q ss_pred cCChHHHHHHHHHhC--CCHHHHHhhh
Q psy2473 113 LPDNTVAQKIAKLLG--LSITEMTKAF 137 (213)
Q Consensus 113 ~~~~~~l~~aA~LLg--v~~~~L~~~L 137 (213)
++ .+.+..+|+.|| |+.+.|..-+
T Consensus 37 ~p-~~~l~~ia~~l~~~v~~~~l~p~~ 62 (79)
T 3bd1_A 37 VP-AERCIDIERVTNGAVICRELRPDV 62 (79)
T ss_dssp CC-GGGHHHHHHHTTTSSCHHHHCTTT
T ss_pred CC-HHHHHHHHHHHCCCCcHHHhCccc
Confidence 44 777899999999 9998874433
No 52
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=33.00 E-value=64 Score=23.85 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=28.7
Q ss_pred cCChHHHHHHHHHhCCCHHHHHhhhh----------------------cceEeeCceeEeecC
Q psy2473 113 LPDNTVAQKIAKLLGLSITEMTKAFL----------------------KPRIKVGRDFVTKSQ 153 (213)
Q Consensus 113 ~~~~~~l~~aA~LLgv~~~~L~~~L~----------------------~~~~~~~~e~v~~~~ 153 (213)
+.+.+.+..+|.-+|++.+++..++- ++++.++|+.+..+.
T Consensus 104 ~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gtPt~ving~~~~~g~ 166 (195)
T 3hd5_A 104 LFDKKAMGEWAASQGVDRAKFDSVFDSFSVQTQVQRASQLAEAAHIDGTPAFAVGGRYMTSPV 166 (195)
T ss_dssp CCSHHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEECTT
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHcCHHHHHHHHHHHHHHHHhCCCcCceEEECCEEEeCcc
Confidence 45677788888888888887766542 456677777766654
No 53
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=32.86 E-value=6.1 Score=25.58 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCCCcccee
Q psy2473 93 QATVQAMNIMGMTNEDYS 110 (213)
Q Consensus 93 ~~l~~al~~lg~~~~e~~ 110 (213)
..+..++...|+++.+..
T Consensus 15 ~~l~~~r~~~glsq~~lA 32 (88)
T 2wiu_B 15 NAMKLVRQQNGWTQSELA 32 (88)
T ss_dssp HHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHH
Confidence 346677777888865443
No 54
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=32.44 E-value=1e+02 Score=20.10 Aligned_cols=36 Identities=8% Similarity=0.201 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCCccceeeecCChHHHHHHHHHhCCCHHHHHhhhhc
Q psy2473 91 EFQATVQAMNIMGMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKAFLK 139 (213)
Q Consensus 91 ~f~~l~~al~~lg~~~~e~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~ 139 (213)
+-+.+..+|+..+-+ ...+|++|||+...|.+-+-+
T Consensus 42 Er~~I~~aL~~~~GN-------------~s~AA~~LGISR~TLyrKLkk 77 (81)
T 1umq_A 42 RWEHIQRIYEMCDRN-------------VSETARRLNMHRRTLQRILAK 77 (81)
T ss_dssp HHHHHHHHHHHTTSC-------------HHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-------------HHHHHHHhCCCHHHHHHHHHH
Confidence 345578888887655 468999999999998876654
No 55
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=31.46 E-value=34 Score=22.66 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCHHHHHhhhhc
Q psy2473 118 VAQKIAKLLGLSITEMTKAFLK 139 (213)
Q Consensus 118 ~l~~aA~LLgv~~~~L~~~L~~ 139 (213)
.++.+|++||+++++.++.+..
T Consensus 32 sl~~La~ll~ls~~~vE~~ls~ 53 (84)
T 1ufm_A 32 TFEELGALLEIPAAKAEKIASQ 53 (84)
T ss_dssp EHHHHHHHTTSCHHHHHHHHHH
T ss_pred eHHHHHHHHCcCHHHHHHHHHH
Confidence 3679999999999888776643
No 56
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=29.25 E-value=58 Score=20.28 Aligned_cols=17 Identities=6% Similarity=0.091 Sum_probs=11.1
Q ss_pred HHHHHHHHhcCCCccce
Q psy2473 93 QATVQAMNIMGMTNEDY 109 (213)
Q Consensus 93 ~~l~~al~~lg~~~~e~ 109 (213)
..+...+...|+++.+.
T Consensus 13 ~~l~~~r~~~glsq~~l 29 (84)
T 2ef8_A 13 QLLTKLRKEASLSQSEL 29 (84)
T ss_dssp HHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHcCCCHHHH
Confidence 34666777778886443
No 57
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=28.24 E-value=24 Score=26.50 Aligned_cols=42 Identities=19% Similarity=0.113 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCcccee----------------eecCChHHHHHHHHHhCCCHHHHHh
Q psy2473 94 ATVQAMNIMGMTNEDYS----------------ASLPDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 94 ~l~~al~~lg~~~~e~~----------------~~~~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
.++...+..|+++++.. ....+.+.+..+|+.|||+.+.|..
T Consensus 15 ~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~v~~~~l~~ 72 (192)
T 1y9q_A 15 QLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFA 72 (192)
T ss_dssp HHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGGGT
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHcC
Confidence 45666666777766554 1234567788888888888777653
No 58
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=28.06 E-value=25 Score=22.49 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCCCccc
Q psy2473 92 FQATVQAMNIMGMTNED 108 (213)
Q Consensus 92 f~~l~~al~~lg~~~~e 108 (213)
-..+...+...|+++.+
T Consensus 20 ~~~l~~~r~~~glsq~e 36 (83)
T 2a6c_A 20 LIVLQEHLRNSGLTQFK 36 (83)
T ss_dssp HHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHcCCCHHH
Confidence 45577788888888643
No 59
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.79 E-value=53 Score=21.25 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=24.9
Q ss_pred CChHHHHHHHHHhCCCHHHHHhhhhcce
Q psy2473 114 PDNTVAQKIAKLLGLSITEMTKAFLKPR 141 (213)
Q Consensus 114 ~~~~~l~~aA~LLgv~~~~L~~~L~~~~ 141 (213)
.+.+.+..+|+-+|++.+....++.+++
T Consensus 30 Ps~eei~~LA~~lgL~~~VVrVWFqNrR 57 (71)
T 2da7_A 30 PNSDELLKISIAVGLPQEFVKEWFEQRK 57 (71)
T ss_dssp CCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHhhcc
Confidence 4677899999999999999999998865
No 60
>1gvn_A Epsilon; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: a.8.2.1 PDB: 3q8x_A*
Probab=27.69 E-value=69 Score=21.53 Aligned_cols=28 Identities=18% Similarity=0.498 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q psy2473 159 EFAVEAISKACYERMFRWLVNRINRSLDRTK 189 (213)
Q Consensus 159 ~~~rDalak~LY~~LF~wIV~~IN~~l~~~~ 189 (213)
++...-++.++|.|+.++|++ .-+....
T Consensus 11 iEilnEfs~~vy~rvln~Vln---heldk~d 38 (90)
T 1gvn_A 11 IEIINELSASVYNRVLNYVLN---HELNKND 38 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---TTCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHh---hhcccch
Confidence 456677999999999999986 4554433
No 61
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=26.16 E-value=23 Score=22.16 Aligned_cols=12 Identities=17% Similarity=0.296 Sum_probs=6.2
Q ss_pred HHHHHHhcCCCc
Q psy2473 95 TVQAMNIMGMTN 106 (213)
Q Consensus 95 l~~al~~lg~~~ 106 (213)
++......|+++
T Consensus 16 lr~~R~~~gltq 27 (73)
T 3fmy_A 16 IVKVRKKLSLTQ 27 (73)
T ss_dssp HHHHHHHTTCCH
T ss_pred HHHHHHHcCCCH
Confidence 334445556664
No 62
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=25.63 E-value=56 Score=20.65 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=25.7
Q ss_pred hcCCCcccee-----ee-cCChHHHHHHHHHhCCCHHHHHh
Q psy2473 101 IMGMTNEDYS-----AS-LPDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 101 ~lg~~~~e~~-----~~-~~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
.+|++...+. -. ..+.+.+..+|+.|||++++|..
T Consensus 36 ~~gis~~~is~~E~g~~~~p~~~~l~~ia~~l~v~~~~l~~ 76 (86)
T 2ofy_A 36 DAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAA 76 (86)
T ss_dssp HHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHHHHHT
T ss_pred HhCCCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHHhc
Confidence 4566655444 22 45678899999999999998865
No 63
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=25.44 E-value=88 Score=20.38 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=34.9
Q ss_pred CchHHHHHHHHHHHHhcCCCccceeeecCChHHHHHHHHHhCCCHHHHHhhhh
Q psy2473 86 VDDAVEFQATVQAMNIMGMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKAFL 138 (213)
Q Consensus 86 ~~d~~~f~~l~~al~~lg~~~~e~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~ 138 (213)
++|.+-|+.++.++..|+-.+ ...+..+|.=||++.....+.|.
T Consensus 8 ~~~~~~~~~v~~~i~~L~~~~---------~~Ta~~IAkkLg~sK~~vNr~LY 51 (75)
T 1sfu_A 8 VNDAEIFSLVKKEVLSLNTND---------YTTAISLSNRLKINKKKINQQLY 51 (75)
T ss_dssp CCSHHHHHHHHHHHHTSCTTC---------EECHHHHHHHTTCCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhCCCCc---------chHHHHHHHHHCCCHHHHHHHHH
Confidence 478899999999999877432 13477899999999888777775
No 64
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=25.11 E-value=54 Score=20.20 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=18.2
Q ss_pred HHHHHHHhCCCHHHHHhhhhcc
Q psy2473 119 AQKIAKLLGLSITEMTKAFLKP 140 (213)
Q Consensus 119 l~~aA~LLgv~~~~L~~~L~~~ 140 (213)
...+|++|||+...|.++.-..
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~G 26 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQG 26 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHCC
Confidence 3579999999999998877653
No 65
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=23.17 E-value=23 Score=23.45 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=17.0
Q ss_pred cCChHHHHHHHHHhCCCHHHHH
Q psy2473 113 LPDNTVAQKIAKLLGLSITEMT 134 (213)
Q Consensus 113 ~~~~~~l~~aA~LLgv~~~~L~ 134 (213)
.++.+.+..+|+.|||+++.|.
T Consensus 44 ~p~~~~l~~la~~l~v~~~~l~ 65 (98)
T 3lfp_A 44 APDFEMANRLAKVLKIPVSYLY 65 (98)
T ss_dssp CCCHHHHHHHHHHHTSCGGGGG
T ss_pred CCCHHHHHHHHHHHCcCHHHHh
Confidence 4567788888999999887664
No 66
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=22.98 E-value=48 Score=18.14 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=11.2
Q ss_pred HHHHHHhc--CCCHHHHhh
Q psy2473 48 KTLTVSSS--GATPEQRKE 64 (213)
Q Consensus 48 hiFYqll~--g~~~~~~~~ 64 (213)
.-||++|. +.++++|..
T Consensus 7 naFYevLh~~nLtEeQrn~ 25 (34)
T 1l6x_B 7 RRFYEALHDPNLNEEQRNA 25 (34)
T ss_dssp HHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHh
Confidence 35999976 556666653
No 67
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=22.53 E-value=32 Score=25.78 Aligned_cols=42 Identities=21% Similarity=0.176 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCcccee----------------ee-cCChHHHHHHHHHhCCCHHHHHh
Q psy2473 94 ATVQAMNIMGMTNEDYS----------------AS-LPDNTVAQKIAKLLGLSITEMTK 135 (213)
Q Consensus 94 ~l~~al~~lg~~~~e~~----------------~~-~~~~~~l~~aA~LLgv~~~~L~~ 135 (213)
.++...+..|++.++.. -. ..+.+.+..+|+.|||+.+.|..
T Consensus 14 ~l~~~r~~~g~s~~~la~~~gis~~~ls~~e~g~~~~p~~~~l~~ia~~l~~~~~~l~~ 72 (198)
T 2bnm_A 14 LLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTP 72 (198)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSCTGGGSC
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHEEc
Confidence 45666666777776655 12 45667899999999999877753
No 68
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=21.70 E-value=58 Score=19.74 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCCCccceeeecCChHHHHHHHHHhCCCHHHHHhhhhc
Q psy2473 91 EFQATVQAMNIMGMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKAFLK 139 (213)
Q Consensus 91 ~f~~l~~al~~lg~~~~e~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~ 139 (213)
+-..+..+|+..| + ...+|++|||+...|.+-+-.
T Consensus 22 Er~~I~~aL~~~g-n-------------~~~aA~~LGIsr~tL~rklkk 56 (61)
T 1g2h_A 22 EAQVLKLFYAEYP-S-------------TRKLAQRLGVSHTAIANKLKQ 56 (61)
T ss_dssp HHHHHHHHHHHSC-S-------------HHHHHHHTTSCTHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-C-------------HHHHHHHhCCCHHHHHHHHHH
Confidence 3445677777642 2 468999999999988776644
No 69
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=21.28 E-value=1.4e+02 Score=17.88 Aligned_cols=36 Identities=6% Similarity=0.150 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCccceeeecCChHHHHHHHHHhCCCHHHHHhhhhcce
Q psy2473 93 QATVQAMNIMGMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKAFLKPR 141 (213)
Q Consensus 93 ~~l~~al~~lg~~~~e~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~ 141 (213)
+.+..+|...|-+ ...+|++|||+...|...+-...
T Consensus 22 ~~i~~aL~~~~gn-------------~~~aA~~LGisr~tL~rklkk~g 57 (63)
T 3e7l_A 22 IFIEEKLREYDYD-------------LKRTAEEIGIDLSNLYRKIKSLN 57 (63)
T ss_dssp HHHHHHHHHTTTC-------------HHHHHHHHTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCC-------------HHHHHHHHCcCHHHHHHHHHHhC
Confidence 3467777776544 46899999999999988775543
No 70
>2pyq_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.50A {Jannaschia SP} SCOP: a.279.1.1
Probab=20.75 E-value=33 Score=24.34 Aligned_cols=12 Identities=8% Similarity=-0.014 Sum_probs=9.2
Q ss_pred CccchhHHHHHHhc
Q psy2473 42 GKSSSWKTLTVSSS 55 (213)
Q Consensus 42 EksRvfhiFYqll~ 55 (213)
.|+|+ +|||||+
T Consensus 93 nK~R~--~~YYlla 104 (114)
T 2pyq_A 93 NKYRA--VVYYMLT 104 (114)
T ss_dssp CCBHH--HHHHHHH
T ss_pred Cccee--hhHHHHH
Confidence 46666 8999986
No 71
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=20.74 E-value=1.1e+02 Score=22.91 Aligned_cols=43 Identities=9% Similarity=0.060 Sum_probs=30.1
Q ss_pred HHHHHHhcCCCcccee-----------e-----ecCChHHHHHHHHHhCCCHHHHHhhhh
Q psy2473 95 TVQAMNIMGMTNEDYS-----------A-----SLPDNTVAQKIAKLLGLSITEMTKAFL 138 (213)
Q Consensus 95 l~~al~~lg~~~~e~~-----------~-----~~~~~~~l~~aA~LLgv~~~~L~~~L~ 138 (213)
+..|=..-|++-+++. + .-.+.+.+++++++||++.+++. .|.
T Consensus 18 I~~AK~~KGLTwe~IAe~iG~S~v~vtaa~lGQ~~ls~e~A~kLa~~LgL~~e~~~-~l~ 76 (156)
T 1dw9_A 18 ILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSIL-LLQ 76 (156)
T ss_dssp HHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHHTTCCHHHHH-HTT
T ss_pred HHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHHHHH-HHh
Confidence 4455555677776655 0 13577889999999999999966 444
No 72
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=20.55 E-value=24 Score=33.32 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhhhhcccccCcceeeecceeeeeeccCCCccC
Q psy2473 168 ACYERMFRWLVNRINRSLDRTKRQVYFKLINRYGIILCFLFQSIV 212 (213)
Q Consensus 168 ~LY~~LF~wIV~~IN~~l~~~~~~~~~~~~d~~GilDifGFE~~~ 212 (213)
.|...|..-|-..|...-. ... |+|+|++|| .+|...+||
T Consensus 428 rLF~wlV~~IN~~l~~~~~-~~~---IGvLDI~GF-E~F~~NsFE 467 (770)
T 1w9i_A 428 RLFLWLVKKINNVLCQERK-AYF---IGVLDIYGF-EIFKVNSFE 467 (770)
T ss_dssp HHHHHHHHHHHHHHCCSCC-SEE---EEEEECCCC-CCCSSCCHH
T ss_pred HHHHHHHHHHHHHhcCCCC-CCe---eeeccCccc-cccccCCHH
Confidence 3555666666666654433 555 788888888 677655553
No 73
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=20.33 E-value=71 Score=20.41 Aligned_cols=36 Identities=19% Similarity=-0.057 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCCcccee----------------eecCChHHHHHHHHHhCCC
Q psy2473 94 ATVQAMNIMGMTNEDYS----------------ASLPDNTVAQKIAKLLGLS 129 (213)
Q Consensus 94 ~l~~al~~lg~~~~e~~----------------~~~~~~~~l~~aA~LLgv~ 129 (213)
.++......|+++++.. -...+.+.+..+|+.|||+
T Consensus 18 ~l~~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~ 69 (86)
T 3eus_A 18 RLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEGL 69 (86)
T ss_dssp HHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHTTSSCCBHHHHHHHHHHTTCG
T ss_pred HHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCC
Confidence 35556666777765543 1234556677777777775
Done!