RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2473
(213 letters)
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 255 bits (655), Expect = 1e-81
Identities = 100/248 (40%), Positives = 136/248 (54%), Gaps = 61/248 (24%)
Query: 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRF---------------------------- 35
+G LE Q+LQANPILEAFGNAKTV+NDNSSRF
Sbjct: 132 QGTLEDQILQANPILEAFGNAKTVRNDNSSRFGKFIRIHFGNTGKIAGADIETYLLEKSR 191
Query: 36 VLHQSKGKSSS---WKTLTVSSSGATPEQRKEFILED-PKTYLFLSNGNLPVPGVDDAVE 91
V+ Q+ G+ + ++ L SGA PE + +L P Y +LS G L +PGVDDA E
Sbjct: 192 VVFQASGERNYHIFYQLL----SGADPELKSMLLLTGNPNDYRYLSQGELTIPGVDDAEE 247
Query: 92 FQATVQAMNIMGMTNEDYS-------------------------ASLPDNTVAQKIAKLL 126
F+ T +A +I+G ++E+ + A L A K A LL
Sbjct: 248 FKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGTEEADKAAHLL 307
Query: 127 GLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLD 186
G++ ++ KA L PRIKVGR++VTK Q EQV F+V A++KA YER+F WLV RIN++LD
Sbjct: 308 GVNSADLLKALLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLD 367
Query: 187 RTKRQVYF 194
+++ YF
Sbjct: 368 TKQQRAYF 375
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 196 bits (500), Expect = 5e-59
Identities = 84/247 (34%), Positives = 122/247 (49%), Gaps = 60/247 (24%)
Query: 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRF----------------------------V 36
G +E Q+L++NPILEAFGNAKT++N+NSSRF V
Sbjct: 127 GSVEDQILESNPILEAFGNAKTLRNNNSSRFGKFIEIHFDAKGKIIGAKIETYLLEKSRV 186
Query: 37 LHQSKGKSS--SWKTLTVSSSGATPEQRKEFILEDPKTYLFLSNGNLP-VPGVDDAVEFQ 93
+ Q+KG+ + + L +GA+ E +KE L+ P+ Y +L+ G V G+DDA EF+
Sbjct: 187 VSQAKGERNYHIFYQLL---AGASEELKKELGLKSPEDYRYLNQGGCLTVDGIDDAEEFK 243
Query: 94 ATVQAMNIMGMTNE-------------------------DYSASLPDNT-VAQKIAKLLG 127
T+ AM ++G + E D +AS + A+LLG
Sbjct: 244 ETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKEELSNAAELLG 303
Query: 128 LSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDR 187
+ E+ KA K +IK G + +TK EQ A +A++KA Y R+F WLV RIN+SL
Sbjct: 304 VDPEELEKALTKRKIKTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINQSLSF 363
Query: 188 TKRQVYF 194
YF
Sbjct: 364 KDGSTYF 370
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 194 bits (496), Expect = 2e-58
Identities = 87/242 (35%), Positives = 122/242 (50%), Gaps = 53/242 (21%)
Query: 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRF-----VLHQSKGKSSSWKT----LTVSS 54
G LE Q+LQ+NPILEAFGNAKT++N+NSSRF + + G L S
Sbjct: 120 VGPLEDQILQSNPILEAFGNAKTLRNNNSSRFGKFIEIQFDATGSIVGGNIETYLLEKSR 179
Query: 55 ------------------SGATPEQRKEFILEDPKTYLFLSNGN-LPVPGVDDAVEFQAT 95
+GA+ +++KE L+DPK Y +LS VPG+DDA EF+ T
Sbjct: 180 VVYQTPGERNFHIFYQLLAGASAQEKKELGLKDPKDYAYLSQSGCYTVPGIDDAEEFKDT 239
Query: 96 VQAMNIMGMTNE-------------------------DYSASLPDNTVAQKIAKLLGLSI 130
A+ I+G T+E + A + D + IA LLG+
Sbjct: 240 RSALKIIGFTDEEQRSIFRVLAAILHLGNIKFKQDQNEEQAVVEDTEELEIIAGLLGVDP 299
Query: 131 TEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKR 190
E+ KA LK RIK GR+ VTK Q EQ +A +A++KA Y R+F W+V +IN +L +
Sbjct: 300 EELEKALLKRRIKTGRETVTKPQNVEQARYARDALAKAIYSRLFDWIVGKINEALSAKLQ 359
Query: 191 QV 192
+
Sbjct: 360 KA 361
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 159 bits (404), Expect = 2e-45
Identities = 81/246 (32%), Positives = 122/246 (49%), Gaps = 55/246 (22%)
Query: 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRFV----LH-QSKGKSSSWKTLT------- 51
+ +E+++L ANPILEAFGNAKTV+N+NSSRF L GK S K T
Sbjct: 118 DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDETGKISGAKITTYLLEKSR 177
Query: 52 -VSS--------------SGATPEQRKEFILEDPKTYLFLSNGNL-PVPGVDDAVEFQAT 95
VS +GA+PE+RK+ L+ P++Y +L+ G V G+DDA EF+
Sbjct: 178 VVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEEL 237
Query: 96 VQAMNIMGMTNED---------------------------YSASLPDNTVAQKIAKLLGL 128
+A+ +G + E+ +A + + V K A+LLGL
Sbjct: 238 KEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVKNTEVLSKAAELLGL 297
Query: 129 SITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRT 188
E+ +A KVG + +T TKE+ + ++++KA Y R+F W+V+RIN SL
Sbjct: 298 DPEELEEALTYKVTKVGGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPK 357
Query: 189 KRQVYF 194
+ F
Sbjct: 358 DGRSLF 363
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 151 bits (383), Expect = 3e-42
Identities = 76/246 (30%), Positives = 118/246 (47%), Gaps = 58/246 (23%)
Query: 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRF---------------------------- 35
+E+Q+L NPILEAFGNAKTV+NDNSSRF
Sbjct: 187 ISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLLEKSR 246
Query: 36 VLHQSKGKSSS--WKTLTVSSSGATPEQRKEFILEDPKTYLFLSNGNLP-VPGVDDAVEF 92
V+HQ+K + + + L +G E +K +L++PK Y++LS G + G+DDA EF
Sbjct: 247 VVHQNKNERNYHIFYQLL---AGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEF 303
Query: 93 QATVQAMNIMGMTNE------------------------DYSASLPDNTVAQKIAKLLGL 128
+ T+ A+ +G+ E + +A DN+V K LLG+
Sbjct: 304 KITLDALKTIGIDEEEQDQIFKILAAILHIGNIEFKEDRNGAAIFSDNSVLDKACYLLGI 363
Query: 129 SITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRT 188
+ K +K +IK G +++ EQ ++++KA Y +F W+V+RIN+SLD +
Sbjct: 364 DPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHS 423
Query: 189 KRQVYF 194
F
Sbjct: 424 AAASNF 429
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 142 bits (360), Expect = 2e-39
Identities = 69/236 (29%), Positives = 109/236 (46%), Gaps = 62/236 (26%)
Query: 10 QLLQANPILEAFGNAKTVKNDNSSRF----------------------------VLHQSK 41
+LQ+NP+LEAFGNAKT++N+NSSRF V+ Q+K
Sbjct: 126 VILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFDFKGDPVGGKITNYLLEKSRVVSQNK 185
Query: 42 GKSS--SWKTLTVSSSGATPEQRKEFILEDPKTYLFLSNGN-LPVPGVDDAVEFQATVQA 98
G+ + + L +GA+ + +E L+ P+ Y +L+ V G+DD +F+ T A
Sbjct: 186 GERNFHIFYQLL---AGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKETQNA 242
Query: 99 MNIMGMT------------------------NEDYSASLPDNTVAQKIAKLLGLSITEMT 134
M ++G + N D +A + D V A LLG+ +E+
Sbjct: 243 MKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGDGAAVISDKDVLDFAAYLLGVDPSELE 302
Query: 135 KAFLKPRIKVGR----DFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLD 186
KA I+ G + EQ + +A++KA Y R+F WLV+RIN++L
Sbjct: 303 KALTSRTIETGGGGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQ 358
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 125 bits (315), Expect = 3e-33
Identities = 72/247 (29%), Positives = 120/247 (48%), Gaps = 65/247 (26%)
Query: 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRFVLHQSKGK-------------SSSWKTL 50
E ++E+++L +NPI+EAFGNAKT +NDNSSRF GK ++ +T
Sbjct: 123 ETQVEEKVLASNPIMEAFGNAKTTRNDNSSRF------GKYIQILFDKRGRIIGANMRTY 176
Query: 51 TVSSS--------------------GATPEQRKEFILEDPKTYLFLSNGNLP-VPGVDDA 89
+ S GA ++ KE L + +L+ G P + GVDDA
Sbjct: 177 LLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDA 236
Query: 90 VEFQATVQAMNIMGMTNE------------------------DYSASL-PDNTVAQKIAK 124
+F ATVQA+ ++G++ E + S+S+ P + Q +
Sbjct: 237 EDFNATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRNDSSSISPKDENLQIACE 296
Query: 125 LLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRS 184
LLG+ +++ K +K +I + + K TKEQ A +A++K Y ++F W+V+ IN+S
Sbjct: 297 LLGVDASDLRKWLVKRQIVTRSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKS 356
Query: 185 LDRTKRQ 191
L+ + +
Sbjct: 357 LNTGEVK 363
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 124 bits (312), Expect = 8e-33
Identities = 71/233 (30%), Positives = 110/233 (47%), Gaps = 55/233 (23%)
Query: 8 EQQLLQANPILEAFGNAKTVKNDNSSRF-----VLHQSKGKSSSWKTLT----------V 52
EQQ+L++NP+LEAFGNAKTV+N+NSSRF + G+ S T +
Sbjct: 127 EQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDDYGRISGAAIRTYLLERSRVCQI 186
Query: 53 SS-----------SGATPEQRKEFILEDPKTYLFLSNGN-LPVPGVDDAVEFQATVQAMN 100
S A PE K++ L DPK + +L+ N + GVDDA E+ AT +AM+
Sbjct: 187 SDPERNYHCFYQLCAAPPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLATRRAMD 246
Query: 101 IMGMTNEDYSA-------------------SLPDNTV---------AQKIAKLLGLSITE 132
++G++ E+ A D++V + A+LL
Sbjct: 247 VVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKA 306
Query: 133 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSL 185
+ A K + + +TK + E + +A++K Y R+F WLVN+IN S+
Sbjct: 307 LEDALCKRVMVTPEEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSI 359
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
VIII myosins, a subgroup which has been associated with
endocytosis, cytokinesis, cell-to-cell coupling and
gating at plasmodesmata. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 113 bits (284), Expect = 5e-29
Identities = 69/241 (28%), Positives = 111/241 (46%), Gaps = 55/241 (22%)
Query: 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRF----------------------------V 36
+E ++LQ NPILEAFGNAKT +NDNSSRF V
Sbjct: 123 SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGAKIQTFLLEKSRV 182
Query: 37 LHQSKGKSSSWKTLTVSSSGATPEQRKEFILEDPKTYLFLSNGN-LPVPGVDDAVEFQAT 95
+ ++G+ S + +GA P +++ L+ Y +L + GVDDA F
Sbjct: 183 VQCARGERS-YHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRFHTL 241
Query: 96 VQAMNIMGMTNED----------------YSASLPDNT---------VAQKIAKLLGLSI 130
V+A++I+ ++ ED S ++ DN AKL+G +I
Sbjct: 242 VEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVADEALSTAAKLIGCNI 301
Query: 131 TEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKR 190
++ A ++ V D + + T +Q A +A++K+ Y +F WLV +IN+SL+ KR
Sbjct: 302 EDLMLALSTRKMHVNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKR 361
Query: 191 Q 191
+
Sbjct: 362 R 362
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 105 bits (265), Expect = 2e-26
Identities = 62/232 (26%), Positives = 105/232 (45%), Gaps = 57/232 (24%)
Query: 7 LEQQLLQANPILEAFGNAKTVKNDNSSRF----------------------------VLH 38
+EQQ+L+ANPILEAFGNAKT++NDNSSRF ++
Sbjct: 120 IEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRGAIEGAKIEQYLLEKSRIVR 179
Query: 39 QSKGKSSSWKTLTVSSSGATPEQRKEFILEDPKTYLFLSNGN-LPVPGVDDAVEFQATVQ 97
Q++ + + + +G + ++++ L + Y +L+ G + G DDA +F
Sbjct: 180 QARDERN-YHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFADIRS 238
Query: 98 AMNIMGMTNED------------------YSASLPDNTVA---------QKIAKLLGLSI 130
AM ++ T+++ + A+ DN A Q++A+LLG+ I
Sbjct: 239 AMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDTPNLQRVAQLLGVPI 298
Query: 131 TEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRIN 182
++ A I + V ++EQ +A K Y R+F W+V +IN
Sbjct: 299 QDLMDALTSRTIFTRGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKIN 350
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional.
Length = 821
Score = 93.6 bits (233), Expect = 4e-22
Identities = 52/242 (21%), Positives = 106/242 (43%), Gaps = 57/242 (23%)
Query: 2 TLEGELEQQLLQANPILEAFGNAKTVKNDNSSRF-------VLHQSKGKSSSWKTLTVSS 54
++ +++ ++ ANP+LEAFGNAKT++N+NSSRF + + + S +
Sbjct: 214 NMDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSIVAFLLEK 273
Query: 55 S--------------------GATPEQRKEFILEDPKTYLFLSNGNLPVPGVDDAVEFQA 94
S GA E ++++ L+ + Y +++ L VPG+DD +F+
Sbjct: 274 SRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINPKCLDVPGIDDVKDFEE 333
Query: 95 TVQAMNIMGMTN-----------------------------EDYSASLPDN-TVAQKIAK 124
+++ + MG++ D +A ++ V + +
Sbjct: 334 VMESFDSMGLSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISDESLEVFNEACE 393
Query: 125 LLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRS 184
LL L + K G + +K++ E +++SKA YE++F W++ +N +
Sbjct: 394 LLFLDYESLKKELTVKVTYAGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNAT 453
Query: 185 LD 186
++
Sbjct: 454 IE 455
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 86.5 bits (214), Expect = 8e-20
Identities = 66/253 (26%), Positives = 113/253 (44%), Gaps = 56/253 (22%)
Query: 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRF---------------------------V 36
+ +Q+L+A P+LEAFGNAKTV+NDNSSRF +
Sbjct: 119 SAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLEGGVIVGAITSQYLLEKSRI 178
Query: 37 LHQSKGKSSSWKTLTVSSSGATPEQRKEFILEDPKTYLFLSNG-NLPVPGVDDAVEFQAT 95
+ Q+K + ++ +G + R+ F L++ +TY +L+ G N + G DA +F+
Sbjct: 179 VFQAKNE-RNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFRRL 237
Query: 96 VQAMNIMGMTNEDYS---------------------------ASLPDNTVAQKIAKLLGL 128
+ AM ++G ++ED AS+ Q +A+LL +
Sbjct: 238 LAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVSAREIQAVAELLQI 297
Query: 129 SITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRT 188
S + KA + R+ + T E A +AI+K Y +F WL+ R+N + T
Sbjct: 298 SPEGLQKAITFKVTETRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT 357
Query: 189 KRQVYFKLINRYG 201
+ + +++ YG
Sbjct: 358 QDTLSIAILDIYG 370
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 76.8 bits (189), Expect = 2e-16
Identities = 58/239 (24%), Positives = 100/239 (41%), Gaps = 65/239 (27%)
Query: 7 LEQQLLQANPILEAFGNAKTVKNDNSSRF----------------------------VLH 38
L++++LQ N ++EAFGNA+T NDNSSRF V+H
Sbjct: 121 LQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRSGAVVGARISEYLLEKSRVVH 180
Query: 39 QSKGKSSSWKTLTVSSSGATPEQRKEFILEDPKTYLFLSNGNLPVPGVDDAV-------E 91
Q++G+ + + + A ++ E+ L + KT +L N V V D +
Sbjct: 181 QAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRV--VQDITSNKFYKDQ 238
Query: 92 FQATVQAMNIMGMTNED----YS------------------------ASLPDNTVAQKIA 123
F+ Q ++G T+E+ Y + + + + A
Sbjct: 239 FEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSNVAALENAA 298
Query: 124 KLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRIN 182
LL + E+ +A + + + + T E+ A +A++KA Y R+F W+VNRIN
Sbjct: 299 SLLCIRSDELQEALTSHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRIN 357
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 692
Score = 71.5 bits (175), Expect = 1e-14
Identities = 59/235 (25%), Positives = 96/235 (40%), Gaps = 58/235 (24%)
Query: 8 EQQLLQANPILEAFGNAKTVKNDNSSRF----------------------------VLHQ 39
EQ +L A P+LEAFGNAKT N+NSSRF ++ Q
Sbjct: 132 EQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYRENGMVRGAVVEKYLLEKSRIVSQ 191
Query: 40 SKGKSSSWKTLTVSSSGATPEQRKEFILEDPKTYLFLSNGNLPV-PGVDDAVEFQATVQA 98
K + ++ GA+ E+RK+ L Y +L+ NL + G D+ EF+ QA
Sbjct: 192 EKDE-RNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEFERLKQA 250
Query: 99 MNIMGM----------------------------TNEDYSASLPDNTVAQKIAKLLGLSI 130
M ++G + D S + + V +++LL +
Sbjct: 251 MEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNPEVVDLLSQLLKVKR 310
Query: 131 TEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSL 185
+ +A K R + + + + A +A++K Y +F W+V RIN +L
Sbjct: 311 ETLMEALTKKRTVTVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHAL 365
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 71.0 bits (174), Expect = 2e-14
Identities = 60/273 (21%), Positives = 104/273 (38%), Gaps = 97/273 (35%)
Query: 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRF------------------VLH-------- 38
+++ ++++ANP+LEAFGNAKTV+N+NSSRF V H
Sbjct: 123 QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKNSVVGGFVSHYLLEKSRI 182
Query: 39 --QSKGKSSSWKTLTVSSSGATPEQRKEFILEDPKTYLFLSNG----------------- 79
QS + ++ +GA+ + R++ L P + +L+ G
Sbjct: 183 CVQSAEE-RNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQILQN 241
Query: 80 ----------NLPVPGVDDAVEFQATVQAMNIMGMTNED--------------------- 108
L P +DD +FQ A+ +G+ + +
Sbjct: 242 RKSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEE 301
Query: 109 ----------YSASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKV-----GRDFVTKSQ 153
+ S A+LLGL ++ + L R+ + + V K
Sbjct: 302 AGSTSGGCNVKNQSEQSLEYC---AELLGLDQDDL-RVSLTTRVMLTTAGGAKGTVIKVP 357
Query: 154 TK-EQVEFAVEAISKACYERMFRWLVNRINRSL 185
K EQ A +A++KA Y +F +V+R+N+
Sbjct: 358 LKVEQANNARDALAKAVYSHLFDHVVSRVNQCF 390
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 37.5 bits (87), Expect = 0.004
Identities = 50/234 (21%), Positives = 82/234 (35%), Gaps = 65/234 (27%)
Query: 17 ILEAFGNAKTVKNDNSSRFVL-------HQSKGKSSSWKTLTVSSS--GATPEQRKEFIL 67
ILEAFGN T N N++RF + S+S +T+ + S P F++
Sbjct: 132 ILEAFGNVSTALNGNATRFTQILSLDFDQTGQIASASLQTMLLERSRVARRPNGETNFVV 191
Query: 68 E---------DPKTYLFLSN-------GNLPVPGVDD----AVEFQATVQAMNIMGMTNE 107
D +T L L G + +D A++F QAM ++G++
Sbjct: 192 FSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSRLQQAMEVLGISEG 251
Query: 108 DYSA-----------------------SLPDNTVAQKIAKLLGLSITEMTKAFLK---PR 141
+ A AQK A+LLG + E++ A K
Sbjct: 252 EQRAIWRVLAAIYHLGAAGATKVAGRKQFARPEWAQKAAELLGCPLEELSSATFKHTLRG 311
Query: 142 IKVGRDFVTKSQTKEQVEFA----------VEAISKACYERMFRWLVNRINRSL 185
+ E + +E ++ Y +F +V+ INRS+
Sbjct: 312 GINQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSI 365
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 32.9 bits (75), Expect = 0.064
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 16/69 (23%)
Query: 2 TLEGELEQQ---------LLQANPILEAFG-NAKTVKNDNSSRF------VLHQSKGKSS 45
T+EG+ E ++ A A T N++SSR +S
Sbjct: 40 TMEGKREGAGIIPRTVTDVIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALAS 99
Query: 46 SWKTLTVSS 54
+ + V
Sbjct: 100 ATEQPKVGK 108
>gnl|CDD|216728 pfam01828, Peptidase_A4, Peptidase A4 family.
Length = 208
Score = 31.1 bits (71), Expect = 0.32
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 39 QSKGKSSSWKTLTVSSSGATPEQRKEFILEDPKTYLFLSNGNLPVPGVD-DAVEF 92
+S G++ + KTL+ S+ Q E+I+ED F S +L VP + V F
Sbjct: 116 KSTGQTVT-KTLSAPSTATLCGQNAEWIVED-----FESGDSL-VPLANFGTVTF 163
>gnl|CDD|215416 PLN02779, PLN02779, haloacid dehalogenase-like hydrolase family
protein.
Length = 286
Score = 30.8 bits (70), Expect = 0.37
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 47 WKTLTVSSSGATPEQRKEFI--LEDPKTYLFL---SNGNLPV-PGV 86
W T T+ + E+RKE + L D KT LF +G LP+ PGV
Sbjct: 104 WPTSTIEKAPKDEEERKELVDSLHDRKTELFKELIESGALPLRPGV 149
>gnl|CDD|216192 pfam00920, ILVD_EDD, Dehydratase family.
Length = 521
Score = 30.1 bits (69), Expect = 0.96
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 92 FQATVQAMNI----MGMTNEDYSASLPDNTVA-QKIAKLLGLSITEMTKAFLKPRIKVGR 146
T M +G++ SA++P ++A+ G I E+ K LKP R
Sbjct: 163 GMGTANTMACLAEALGLS-LPGSATIPAVDPRRLRLAREAGRRIVELVKEDLKP-----R 216
Query: 147 DFVTK 151
D +T+
Sbjct: 217 DILTR 221
>gnl|CDD|226808 COG4371, COG4371, Predicted membrane protein [Function unknown].
Length = 334
Score = 29.9 bits (67), Expect = 1.1
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 63 KEFILEDPKTYLFLSN-----GNLPVPGVDDAVEFQATVQAMNIMGMTNED 108
E I+ Y+ ++ GNLP+P V+ + E + + A I G+T+ D
Sbjct: 254 PERIVAGMGEYITVTVAAATLGNLPLPAVNTSAELRQALLA--IGGITSGD 302
>gnl|CDD|130652 TIGR01591, Fdh-alpha, formate dehydrogenase, alpha subunit,
archaeal-type. This model describes a subset of formate
dehydrogenase alpha chains found mainly archaea but also
in alpha and gamma proteobacteria and a small number of
gram positive bacteria. The alpha chain contains domains
for molybdopterin dinucleotide binding and molybdopterin
oxidoreductase (pfam01568 and pfam00384, respectively).
The holo-enzyme also contains beta and gamma subunits.
The enzyme catalyzes the oxidation of formate (produced
from pyruvate during anaerobic growth) to carbon dioxide
with the concomitant release of two electrons and two
protons. The enzyme's purpose is to allow growth on
formate in some circumstances and, in the case of FdhH
in gamma proteobacteria, to pass electrons to
hydrogenase (by which process acid is neutralized). This
model is well-defined, with only a single fragmentary
sequence falling between trusted and noise. The alpha
subunit of a version of nitrate reductase is closely
related.
Length = 671
Score = 29.0 bits (65), Expect = 2.1
Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 12/83 (14%)
Query: 74 LFLSNGNLPVPGVD-DAVEFQATVQAMNIMGMTNEDYSASLP--DNTVAQKIAKLLG--- 127
L + GN+ PG + + Q VQ MG + P D V +K AK G
Sbjct: 304 LAMLTGNIGKPGGGVNPLRGQNNVQGACDMGALPDFLPGYQPVSDEEVREKFAKAWGVVK 363
Query: 128 ------LSITEMTKAFLKPRIKV 144
L I EM A +K
Sbjct: 364 LPAEPGLRIPEMIDAAADGDVKA 386
>gnl|CDD|222842 PHA01972, PHA01972, structural protein.
Length = 828
Score = 28.3 bits (63), Expect = 3.1
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 87 DDAVEFQATVQAMNIMGMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKAFLKP--RIKV 144
D A+ A M D ++P N A+ KLLG+ E A P R +
Sbjct: 545 DWAIIAAAPRTNYGGAKMLTPDAIYAVPRNMDAEAQTKLLGMVDGETMMAVPTPDARTRA 604
Query: 145 GRDFVTKSQT 154
TKS T
Sbjct: 605 IMAGGTKSGT 614
>gnl|CDD|183045 PRK11233, PRK11233, nitrogen assimilation transcriptional
regulator; Provisional.
Length = 305
Score = 28.1 bits (63), Expect = 3.9
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 2 TLEGELEQQLL 12
TLEGEL QQLL
Sbjct: 38 TLEGELNQQLL 48
>gnl|CDD|220992 pfam11130, TraC_F_IV, F pilus assembly Type-IV secretion system for
plasmid transfer. This family of TraC proteins is
conserved in Proteobacteria. TraC is a cytoplasmic,
peripheral membrane protein and is one of the proteins
encoded by the F transfer region of the conjugative
plasmid that is required for the assembly of F pilin
into the mature F pilus structure. F pili are
filamentous appendages that help establish the physical
contact between donor and recipient cells involved in
the conjugation process.
Length = 236
Score = 27.6 bits (62), Expect = 4.6
Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 23/109 (21%)
Query: 69 DPKTYLFLSNGN--------LPVPGVDDAVEFQATVQAMNIMGMTNEDYSASLPDNTVAQ 120
DP+ LFL NGN P+ G ++V + ++ + LPD TV Q
Sbjct: 15 DPEEGLFLENGNSLGFVFELSPLGGAGESV--RDALEDL---------LQDDLPDGTVVQ 63
Query: 121 KIAKLLGL-SITEMTKAFLKPRIKVGRDF-VTKSQTKEQVEFAVEAISK 167
L I E A R + G + + +F + SK
Sbjct: 64 FY--LQASPDIDEYLDALRAYRKRAGGRGSIFTELALRRADFHLRGASK 110
>gnl|CDD|227428 COG5097, MED6, RNA polymerase II transcriptional regulation
mediator [Transcription].
Length = 210
Score = 27.6 bits (61), Expect = 4.8
Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 35 FVLHQSKGKSSSWKTLTVSSSGATPEQRKEFILEDPKTYLFLSNGNLPVPGVDDAVEFQA 94
+ +++ + S ++ ++S +++ F Y LSN NL + +
Sbjct: 116 YSIYRCRMGDSMYQ---LNSFLDRMMEKRRFNPFSGPKYPKLSNDNLAKSLSNTSKP--- 169
Query: 95 TVQAMNIMGMTNEDYSASLPDNTVAQKIAKLLGLSITEM 133
+ M + N+ D +V + + L S E
Sbjct: 170 -LDFNKNMEIFNDFKKEQAEDFSVVRAFMQSLHSS-KEA 206
>gnl|CDD|217674 pfam03690, UPF0160, Uncharacterized protein family (UPF0160). This
family of proteins contains a large number of metal
binding residues. The patterns are suggestive of a
phosphoesterase function. The conserved DHH motif may
mean this family is related to pfam01368.
Length = 315
Score = 27.5 bits (62), Expect = 5.0
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 35 FVLHQSKGKSSSWKTLTVSSSGATPEQRKEFILEDPKTYLFLSNGNLP-VPGVDDAV 90
FVL+ S W+ TV + E RK P+ + L + L V G+ AV
Sbjct: 239 FVLYPDG--SGQWRVQTVPVEPGSFESRKPL----PEAWRGLRDEELSEVSGIPGAV 289
>gnl|CDD|215562 PLN03078, PLN03078, Putative tRNA pseudouridine synthase;
Provisional.
Length = 513
Score = 27.6 bits (61), Expect = 5.2
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 2 TLEGELEQQLLQANPILEA-FGNAKTVKNDNSSR 34
T+EGELE + +A I E+ +GN + SSR
Sbjct: 98 TIEGELETAIFKAGGIRESNYGNLHKIGWARSSR 131
>gnl|CDD|223207 COG0129, IlvD, Dihydroxyacid dehydratase/phosphogluconate
dehydratase [Amino acid transport and metabolism /
Carbohydrate transport and metabolism].
Length = 575
Score = 27.5 bits (62), Expect = 6.2
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 98 AMNIMGMTNEDYSASLPDNTVAQK-IAKLLGLSITEMTKAFLKPRIKVGRDFVTK 151
+G++ SAS+P + +K +A+ G I E+ + +KP RD +TK
Sbjct: 214 LAEALGLS-LPGSASIPATSAERKALAREAGRRIVELVEEDIKP-----RDILTK 262
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 27.0 bits (60), Expect = 7.6
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 8/44 (18%)
Query: 18 LEAFGNAKTVKNDNSSRFVLHQSK--------GKSSSWKTLTVS 53
+E A V + S F H K G + SW L ++
Sbjct: 260 VEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIA 303
>gnl|CDD|233588 TIGR01823, PabB-fungal, aminodeoxychorismate synthase, fungal
clade. This model represents the fungal clade of a
para-aminobenzoate synthesis enzyme,
aminodeoxychorismate synthase, which acts on chorismate
in a pathway that yields PABA, a precursor of folate.
Length = 742
Score = 27.2 bits (60), Expect = 9.0
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 2 TLEGELEQQLLQANPILEAF 21
T EGELE+ + L+ F
Sbjct: 722 TPEGELEEMYNKLESNLQIF 741
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.132 0.368
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,447,188
Number of extensions: 937046
Number of successful extensions: 1167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1143
Number of HSP's successfully gapped: 58
Length of query: 213
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 120
Effective length of database: 6,812,680
Effective search space: 817521600
Effective search space used: 817521600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)