RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2473
(213 letters)
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 230 bits (590), Expect = 8e-72
Identities = 77/240 (32%), Positives = 116/240 (48%), Gaps = 52/240 (21%)
Query: 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRF-----VLHQSKGKSSSWKTLT------- 51
G LEQQ+LQANPILEAFGNAKT +N+NSSRF + S G S +
Sbjct: 208 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSR 267
Query: 52 VSS---------------SGATPEQRKEFILEDPKTYLFLSNGN-LPVPGVDDAVEFQAT 95
V +GAT E++K L P+++ +L+ + + GV D+ EF+ T
Sbjct: 268 VVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKIT 327
Query: 96 VQAMNIMGMTNED------------------------YSASLPDNTVAQKIAKLLGLSIT 131
QAM+I+G + E+ A L D T + + G++ +
Sbjct: 328 RQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKTALNAASTVFGVNPS 387
Query: 132 EMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 191
+ KA ++PRI GRD V + E+ + +A+ KA Y R+F WLV +IN L + ++
Sbjct: 388 VLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERKA 447
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 231 bits (591), Expect = 9e-72
Identities = 86/244 (35%), Positives = 118/244 (48%), Gaps = 53/244 (21%)
Query: 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRF----VLHQS-KGKSSSWKTLT------- 51
+G LE Q++QANP LEAFGNAKTV+NDNSSRF +H GK +S T
Sbjct: 213 KGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSR 272
Query: 52 VSS---------------SGATPEQRKEFILE-DPKTYLFLSNGNLPVPGVDDAVEFQAT 95
V S PE ++ +P Y F+S G V +DDA E AT
Sbjct: 273 VIFQLKAERDYHIFYQILSNKKPELLDMLLITNNPYDYAFISQGETTVASIDDAEELMAT 332
Query: 96 VQAMNIMGMTNED-------------------------YSASLPDNTVAQKIAKLLGLSI 130
A +++G T+E+ A A K A L+GL+
Sbjct: 333 DNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTEEADKSAYLMGLNS 392
Query: 131 TEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKR 190
++ K PR+KVG ++VTK Q +QV +A A++KA YERMF W+V RIN +L+ +
Sbjct: 393 ADLLKGLCHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETKQP 452
Query: 191 QVYF 194
+ YF
Sbjct: 453 RQYF 456
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 229 bits (585), Expect = 7e-71
Identities = 55/244 (22%), Positives = 95/244 (38%), Gaps = 53/244 (21%)
Query: 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRF-----VLHQSKGKSSSWKTLT------- 51
E +E+++L +NPI+E+ GNAKT +NDNSSRF + + + T
Sbjct: 189 EANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSR 248
Query: 52 VSS---------------SGATPEQRKEFILEDPKTYLFLSNGN-LPVPGVDDAVEFQAT 95
V + A + K L + + + G + G+DDA E T
Sbjct: 249 VVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNT 308
Query: 96 VQAMNIMGMTNE-------------------------DYSASLPDNTVAQKIAKLLGLSI 130
QA ++G+++ D A P + L+G+
Sbjct: 309 RQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDY 368
Query: 131 TEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKR 190
EM ++ + K +K A +A++K Y +F W+V+ +N++L T +
Sbjct: 369 EEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVK 428
Query: 191 QVYF 194
Q F
Sbjct: 429 QHSF 432
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 226 bits (579), Expect = 3e-69
Identities = 75/240 (31%), Positives = 113/240 (47%), Gaps = 52/240 (21%)
Query: 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRF-----VLHQSKGKSSSWKTLT------- 51
G LEQQ+LQANPILEAFGNAKT +N+NSS F + + G S +
Sbjct: 208 SGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQFNNAGFISGASIQSYLLEKSR 267
Query: 52 VSS---------------SGATPEQRKEFILEDPKTYLFLSNGN-LPVPGVDDAVEFQAT 95
V +GAT E++K L P+++ +L+ + + GV D EF+ T
Sbjct: 268 VVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKIT 327
Query: 96 VQAMNIMGMTNED------------------------YSASLPDNTVAQKIAKLLGLSIT 131
QAM+I+G + E+ A L D T + + G++ +
Sbjct: 328 RQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKTALNAASTVFGVNPS 387
Query: 132 EMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 191
+ KA ++PRI GRD V + E+ + +A+ KA Y R+F WLV +IN L ++
Sbjct: 388 VLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCSERKA 447
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 222 bits (568), Expect = 3e-68
Identities = 82/244 (33%), Positives = 121/244 (49%), Gaps = 53/244 (21%)
Query: 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRF----VLHQS-KGKSSSWKTLT------- 51
EG LE Q++QANP+LEA+GNAKT +N+NSSRF +H GK + T
Sbjct: 212 EGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSR 271
Query: 52 VSS---------------SGATPEQRKEFILE-DPKTYLFLSNGNLPVPGVDDAVEFQAT 95
V+ S A PE ++ D Y F++ G L V +DD EF+
Sbjct: 272 VTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLC 331
Query: 96 VQAMNIMGMTNED-------------------------YSASLPDNTVAQKIAKLLGLSI 130
+A +I+G T E+ A A+K+A L G++
Sbjct: 332 DEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINA 391
Query: 131 TEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKR 190
++ KA LKP++KVG + VTK Q QV +V A++K+ Y+RMF WLV R+N++LD +
Sbjct: 392 GDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAK 451
Query: 191 QVYF 194
+ Y+
Sbjct: 452 RNYY 455
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 223 bits (570), Expect = 6e-68
Identities = 98/243 (40%), Positives = 133/243 (54%), Gaps = 53/243 (21%)
Query: 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRF-----VLHQSKGKSSSWKTLT------- 51
GELE+QLLQANPILEAFGNAKTVKNDNSSRF + G T
Sbjct: 186 PGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANIETYLLEKSR 245
Query: 52 VSS---------------SGATPEQRKEFILEDPKTYLFLSNGNLPVPGVDDAVEFQATV 96
GA + + + +LE Y FL+NG + FQ T+
Sbjct: 246 AIRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFLTNGPSSS-PGQERELFQETL 304
Query: 97 QAMNIMGMTNEDY-------------------------SASLPDNTVAQKIAKLLGLSIT 131
+++ ++G ++E+ A++PDNT AQK+ +LLGL +T
Sbjct: 305 ESLRVLGFSHEEIISMLRMVSAVLQFGNIALKRERNTDQATMPDNTAAQKLCRLLGLGVT 364
Query: 132 EMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 191
+ ++A L PRIKVGRD+V K+QTKEQ +FA+EA++KA YER+FRWLV R+NR+LDR+ RQ
Sbjct: 365 DFSRALLTPRIKVGRDYVQKAQTKEQADFALEALAKATYERLFRWLVLRLNRALDRSPRQ 424
Query: 192 VYF 194
Sbjct: 425 GAS 427
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 222 bits (568), Expect = 2e-67
Identities = 55/244 (22%), Positives = 95/244 (38%), Gaps = 53/244 (21%)
Query: 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRF-----VLHQSKGKSSSWKTLT------- 51
E +E+++L +NPI+E+ GNAKT +NDNSSRF + + + T
Sbjct: 189 EANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSR 248
Query: 52 VSS---------------SGATPEQRKEFILEDPKTYLFLSNGN-LPVPGVDDAVEFQAT 95
V + A + K L + + + G + G+DDA E T
Sbjct: 249 VVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNT 308
Query: 96 VQAMNIMGMTNE-------------------------DYSASLPDNTVAQKIAKLLGLSI 130
QA ++G+++ D A P + L+G+
Sbjct: 309 RQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDY 368
Query: 131 TEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKR 190
EM ++ + K +K A +A++K Y +F W+V+ +N++L T +
Sbjct: 369 EEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVK 428
Query: 191 QVYF 194
Q F
Sbjct: 429 QHSF 432
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 210 bits (538), Expect = 1e-64
Identities = 58/252 (23%), Positives = 93/252 (36%), Gaps = 62/252 (24%)
Query: 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRF-----VLHQSKGKSSSWKTLT-------V 52
+ + LL +NP+LEAFGNAKT++NDNSSRF + + G K V
Sbjct: 130 ERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRV 189
Query: 53 SS---------------SGATPEQRKEFILE-DPKTYLFLSNGN-LPVPGVDDAVEFQAT 95
G + + E L + Y +L V +DD+ EF+
Sbjct: 190 VGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKII 249
Query: 96 VQAMNIMGMTNED-----------------------------YSASLPDNTVAQKIAKLL 126
V+AM +G+ D + + D A L
Sbjct: 250 VKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCL 309
Query: 127 GLSITEMTKAFLKPRIKVGR----DFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRIN 182
++ A I G ++ Q ++ +A++KA YER+F WLV++IN
Sbjct: 310 KTDQQSLSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKIN 369
Query: 183 RSLDRTKRQVYF 194
++ T +
Sbjct: 370 TIINCTTEKGPV 381
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 214 bits (546), Expect = 2e-64
Identities = 104/244 (42%), Positives = 144/244 (59%), Gaps = 60/244 (24%)
Query: 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRF---------------------------- 35
GELE+QLLQANPILEAFGNAKTVKNDNSSRF
Sbjct: 216 YGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSR 275
Query: 36 VLHQSKGKSS---SWKTLTVSSSGATPEQRKEFILEDPKTYLFLSNGNLPVPGVDDAVEF 92
+ Q+K + + + + +GA+ + R + +LE Y FLSNG++P+P D F
Sbjct: 276 AIRQAKDERTFHIFYYLI----AGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEMF 331
Query: 93 QATVQAMNIMGMTNEDY-------------------------SASLPDNTVAQKIAKLLG 127
Q T++AM IMG T E+ AS+PDNT AQK+ L+G
Sbjct: 332 QETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMG 391
Query: 128 LSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDR 187
+++T+ T++ L PRIKVGRD V K+QTKEQ +FA+EA++KA +ER+FRW++ R+N++LD+
Sbjct: 392 INVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDK 451
Query: 188 TKRQ 191
TKRQ
Sbjct: 452 TKRQ 455
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 194 bits (496), Expect = 3e-58
Identities = 52/274 (18%), Positives = 91/274 (33%), Gaps = 87/274 (31%)
Query: 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRF-----VLHQSKGKSSSWKTLT-------V 52
+++ ++++ANP+LEAFGNAKTV+N+NSSRF + K +
Sbjct: 172 QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRI 231
Query: 53 SS---------------SGATPEQRKEFILEDPKTYLFLSNGN----------------- 80
+GA+ + R+ L P + +L+ G
Sbjct: 232 CVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNR 291
Query: 81 ----------LPVPGVDDAVEFQATVQAMNIMGMTNED---------------------- 108
L P +DD +F AM +G+ +E+
Sbjct: 292 KSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEA 351
Query: 109 ------YSASLPDNTVAQKIAKLLGLSITEMTKAFLK-----PRIKVGRDFVTKSQTKEQ 157
+ + A+LLGL ++ + + EQ
Sbjct: 352 GSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQ 411
Query: 158 VEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 191
A +A++K Y +F +VNR+N+
Sbjct: 412 ANNARDALAKTVYSHLFDHVVNRVNQCFPFETSS 445
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 2e-04
Identities = 52/296 (17%), Positives = 86/296 (29%), Gaps = 114/296 (38%)
Query: 5 GELEQQLLQANPI------LEAFGNAKTVKNDN------SSRFVLHQSKGKSSSWKTLTV 52
E E L+ N I L + VK ++R + + K S+
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 53 SSSGAT----------------PEQRKEFILEDPKTY------LFLSNGNLPVPGVDDAV 90
G E R + +TY L + + +
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLY-----QTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 91 EFQAT-VQAMNIMG-MTN------EDY--SA--SLPDNTVAQ-----KIAKLLGLSITEM 133
+ + Q +NI+ + N +DY S S P V Q AKLLG + E+
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 134 TKAFLKPRIKVGRDFVT-----KSQTKEQVEFAVEAISKACYERMFRWL----------- 177
+++LK + VT ++ + E F ++ KA +F ++
Sbjct: 264 -RSYLKGATGHSQGLVTAVAIAETDSWE--SF-FVSVRKA-ITVLF-FIGVRCYEAYPNT 317
Query: 178 -----------------------------------VNRINRSLDRTKRQVYFKLIN 198
VN+ N L K QV L+N
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK-QVEISLVN 372
Score = 39.6 bits (92), Expect = 5e-04
Identities = 32/200 (16%), Positives = 62/200 (31%), Gaps = 65/200 (32%)
Query: 9 QQLLQANPILEA--FGNAKTVK-NDNSSRFVLHQSK-GKSSSWKTLTVSSSGATPEQRKE 64
++ NP+ FG K + +N S + GK + K E
Sbjct: 1662 LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF-----KEINEHSTS 1716
Query: 65 FILEDPKTYLFLSNGNLPVPGVDDAVEF-Q--------ATVQAMNIMGMTNED------- 108
+ K L + +F Q A + + G+ D
Sbjct: 1717 YTFRSEKGLLSAT-------------QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS 1763
Query: 109 ---YSA------SLP-DNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDF---------- 148
Y+A + ++ V ++ G+++ PR ++GR
Sbjct: 1764 LGEYAALASLADVMSIESLV--EVVFYRGMTMQVAV-----PRDELGRSNYGMIAINPGR 1816
Query: 149 VTKSQTKEQVEFAVEAISKA 168
V S ++E +++ VE + K
Sbjct: 1817 VAASFSQEALQYVVERVGKR 1836
Score = 37.3 bits (86), Expect = 0.003
Identities = 34/188 (18%), Positives = 56/188 (29%), Gaps = 45/188 (23%)
Query: 32 SSR-FVLHQSKGKSSSWKTLTVS-SSGATPEQRKEFILEDPKTYLFLSNGNLPVP----G 85
S+R L G L V +S Q +E F LP P
Sbjct: 5 STRPLTLSH--GSLEH--VLLVPTASFFIASQLQEQ---------FNKI--LPEPTEGFA 49
Query: 86 VDDAVEFQATVQ-AMNIMGMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKV 144
DD E + +G Y +SL + + + ++L L +TE +L+
Sbjct: 50 ADD--EPTTPAELVGKFLG-----YVSSLVEPSKVGQFDQVLNLCLTEFENCYLE----- 97
Query: 145 GRD---FVTK-SQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQVYFKLINR- 199
G D K Q + + + K R D+ F+ +
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYIT-----ARIMAKRPFDKKSNSALFRAVGEG 152
Query: 200 -YGIILCF 206
++ F
Sbjct: 153 NAQLVAIF 160
Score = 35.4 bits (81), Expect = 0.012
Identities = 23/118 (19%), Positives = 34/118 (28%), Gaps = 33/118 (27%)
Query: 97 QAMNIMGMTNEDYSASLPDNTVAQKI--------AKLLGLSITEMTKAFLKPRIKVGRDF 148
Q MGM + Y S AQ + G SI ++
Sbjct: 1627 QEQG-MGM--DLYKTS----KAAQDVWNRADNHFKDTYGFSILDI--------------- 1664
Query: 149 VTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQVYFKLINRYGIILCF 206
V + + F E K E + I +T++ FK IN + F
Sbjct: 1665 VINNPVNLTIHFGGEK-GKRIRENYSAMIFETIVDGKLKTEK--IFKEINEHSTSYTF 1719
Score = 34.3 bits (78), Expect = 0.028
Identities = 23/151 (15%), Positives = 43/151 (28%), Gaps = 46/151 (30%)
Query: 39 QSKG------KSSS-----WK---TLTVSSSGATPEQRKEFILEDPKTYLFLSNGNLPVP 84
Q +G K+S W + G + + ++ +P G
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSI---LDIVINNPVNLTIHFGG----- 1678
Query: 85 GVDDAVEFQATVQAM--NIMGMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKAFLKPRI 142
+ + N M + + +KI K + T T F +
Sbjct: 1679 ---------EKGKRIRENYSAMI---FETIVDGKLKTEKIFKEINEHSTSYT--FRSEK- 1723
Query: 143 KVGRDFVTKSQTKEQVEFAVEAISKACYERM 173
G T+ Q A+ + KA +E +
Sbjct: 1724 --GLLSATQFT---QP--ALTLMEKAAFEDL 1747
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 2e-04
Identities = 40/308 (12%), Positives = 79/308 (25%), Gaps = 122/308 (39%)
Query: 7 LEQQLLQANPILEAFGNA---KTVKNDNSSRFVL-------HQSKGKSSSWKTLTVSSSG 56
+ + + + +KN NS VL +Q +S S
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS-----RSDHS 220
Query: 57 ATPEQRKEFILEDPKTYLFLSNGN--LPVPGVDDAVEFQATVQAMNI----------MGM 104
+ + R I + + L L V + + V+ A N+ +
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLV--LLN-VQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 105 TN------------EDYSASL-PDNTVAQKIAKLLGLSITEMTKAFLKPRIKVG------ 145
T+ + +S +L PD + + K L + L +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQD-----LPREVLTTNPRRLS 331
Query: 146 ------RDF---------VTKSQTKEQVEFAVEAIS----KACYERM--FR--------- 175
RD V + +E ++ + + ++R+ F
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 176 ----W----------LVNR-INRSL--DRTKRQVYF--------------------KLIN 198
W +VN+ SL + K +++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 199 RYGIILCF 206
Y I F
Sbjct: 452 HYNIPKTF 459
>2ifr_A Scytalidopepsin B; enzyme-transition state analog complex,
hydrolase-hydrolase complex; HET: TA2; 1.95A
{Scytalidium lignicola} SCOP: b.29.1.20 PDB: 1s2b_A*
1s2k_A* 2ifw_A*
Length = 206
Score = 29.5 bits (66), Expect = 0.58
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 26 TVKNDNSSRFVLH-QSKGKSSSWKTLTVSSSGATPEQRKEFILEDPKTYLFLSNGNLPVP 84
T +D S L + G+ S K+ + SSG+ EFI+ED + + VP
Sbjct: 94 TATSDTSGSATLENLTTGQKVS-KSFSNESSGSLCRTNAEFIIEDFEECNSNGSDCEFVP 152
Query: 85 GVD--DAVEFQAT 95
AVEF
Sbjct: 153 FASFSPAVEFTDC 165
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6,
pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A
{Pseudomonas fluorescens} SCOP: c.67.1.3
Length = 416
Score = 28.6 bits (64), Expect = 1.7
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 12/72 (16%)
Query: 62 RKEFILEDPKTYLFLSNGN----LPVPGVDDAV--EFQATVQAMNIMGMTNEDYSASLPD 115
R++F L + YL +GN PV I + + L +
Sbjct: 20 RQQFALPEGVIYL---DGNSLGARPVA-ALARAQAVIAEEWGNGLIRSWNSAGW-RDLSE 74
Query: 116 NTVAQKIAKLLG 127
+ ++A L+G
Sbjct: 75 -RLGNRLATLIG 85
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 27.5 bits (62), Expect = 3.3
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 17/66 (25%)
Query: 113 LPDNTVAQKIAKLL---GLSITEMTKAFLKP-------RIKVGRDFVTKSQTKEQVEFAV 162
+ N + K+L G+ + P I R + + T +Q++ A+
Sbjct: 330 IRSNEKTFWVTKMLQDDGV----FVNPVVSPAVPAEESLI---RFSLMATHTYDQIDEAI 382
Query: 163 EAISKA 168
E + K
Sbjct: 383 EKMVKV 388
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 4.0
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 12/38 (31%)
Query: 63 KEFI--LEDP-KTYLFLSNGNLPVPGVDDAVEFQATVQ 97
K+ + L+ K Y ++ + P A+ +AT++
Sbjct: 19 KQALKKLQASLKLY---ADDSAP------ALAIKATME 47
>1y43_B Aspergillopepsin II heavy chain; proctase A, beta sandwich
structure, hydrolase; 1.40A {Aspergillus niger var}
SCOP: b.29.1.20
Length = 173
Score = 26.8 bits (59), Expect = 4.1
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 26 TVKNDNSSRFVL---HQSKGKSSSWKTLTVSSSGATPEQRKEFILEDPKTYLFLSNGNLP 82
TV+ + S + + G+S + T + + G E E+I+ED +G+
Sbjct: 66 TVEATSKSSGSATVENLTTGQSVT-HTFSGNVEGDLCETNAEWIVEDF------ESGDSL 118
Query: 83 VPGVD-DAVEFQATV 96
V D +V F
Sbjct: 119 VAFADFGSVTFTNAE 133
>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1,
possible sugar phosphatase, structural genomics; HET:
MSE EPE; 2.10A {Cytophaga hutchinsonii}
Length = 284
Score = 27.2 bits (61), Expect = 4.5
Identities = 18/77 (23%), Positives = 23/77 (29%), Gaps = 14/77 (18%)
Query: 56 GATPEQRKEFILEDPKTYLF-----LSNGNLPVPGVDDAVEFQATVQAMNI--MGMTNED 108
G E K L K F L N +PG ++A +TN
Sbjct: 1 GMQIESFKSL-LPKYKCIFFDAFGVLKTYNGLLPG---IENTFDYLKAQGQDYYIVTN-- 54
Query: 109 YSASLPDNTVAQKIAKL 125
AS +A KL
Sbjct: 55 -DASRSPEQLADSYHKL 70
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237,
structural GENO PSI, protein structure initiative; 2.20A
{Staphylococcus aureus subsp}
Length = 265
Score = 27.1 bits (61), Expect = 4.5
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 8/36 (22%)
Query: 103 GMTNEDYSASLPDNT--VAQKIAKLLGLSITEMTKA 136
G NE P VA++IA+L GLS E+ +
Sbjct: 215 GKRNE------PARVTLVAEQIAELKGLSYEEVCEQ 244
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 1.80A {Thermotoga maritima} SCOP:
c.1.9.12
Length = 268
Score = 26.7 bits (60), Expect = 5.9
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 118 VAQKIAKLLGLSITEMTKA 136
V + I+++LG+ ++ +A
Sbjct: 236 VVETISQVLGVPEAKVDEA 254
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM
barrel, oxidoreductase; HET: MLY FMN; 2.40A
{Streptococcus mutans}
Length = 345
Score = 26.8 bits (59), Expect = 6.1
Identities = 12/95 (12%), Positives = 32/95 (33%), Gaps = 16/95 (16%)
Query: 81 LPVPGVDDAVEFQATVQAM--------NIMGMTNEDYSASLPDNTVAQKIAKLLGLSITE 132
LP G++ +++ +Q +++GM+ E+ + + + E
Sbjct: 107 LPNLGINYYLDYVTELQKQPDSKNHFLSLVGMSPEETHT------ILXMVEASKYQGLVE 160
Query: 133 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISK 167
+ + P + +T +Q+ V
Sbjct: 161 LNLSC--PNVPGXPQIAYDFETTDQILSEVFTYFT 193
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}
Length = 272
Score = 26.4 bits (59), Expect = 7.7
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 8/36 (22%)
Query: 103 GMTNEDYSASLPDNT--VAQKIAKLLGLSITEMTKA 136
+ NE P N A+ IA++ G+S+ E+ +
Sbjct: 225 QVRNE------PWNISISAEYIAQVKGISVEEVIEV 254
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Length = 311
Score = 26.4 bits (59), Expect = 7.9
Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 6/33 (18%)
Query: 100 NIMGMTNEDYSASLPDNTVAQKIAKLLGLSITE 132
N+ G DY V KI + E
Sbjct: 104 NVAGSEEADYV------AVCAKIGDAANVKAIE 130
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION,
structural genomics, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.1.9.12
Length = 264
Score = 25.9 bits (58), Expect = 8.7
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 103 GMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKA 136
NE A LP + Q+IA G +
Sbjct: 222 SRRNE--PAHLPH--ILQRIAHWRGEDAAWLAAT 251
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural
genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP:
c.1.9.12
Length = 259
Score = 25.9 bits (58), Expect = 9.0
Identities = 6/34 (17%), Positives = 10/34 (29%), Gaps = 4/34 (11%)
Query: 103 GMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKA 136
G N V + +L E+ +A
Sbjct: 218 GQPNR--PEQAAR--VFAVLCELRREPADEIAQA 247
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.35.1.12
Length = 91
Score = 24.7 bits (54), Expect = 9.6
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 112 SLPDNTVAQKIAKLLGLSITEM 133
++P+N V KI + +GL +
Sbjct: 51 AIPNNQVLGKIERAIGLKLRGK 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.368
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,038,831
Number of extensions: 171556
Number of successful extensions: 641
Number of sequences better than 10.0: 1
Number of HSP's gapped: 622
Number of HSP's successfully gapped: 50
Length of query: 213
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 123
Effective length of database: 4,188,903
Effective search space: 515235069
Effective search space used: 515235069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)