RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2473
(213 letters)
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 143 bits (362), Expect = 2e-40
Identities = 108/259 (41%), Positives = 145/259 (55%), Gaps = 56/259 (21%)
Query: 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRF-----VLHQSKGKSSSWKTLTVS----- 53
GELE+QLLQANPILEAFGNAKTVKNDNSSRF + G T
Sbjct: 138 YGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSR 197
Query: 54 -----------------SSGATPEQRKEFILEDPKTYLFLSNGNLPVPGVDDAVEFQATV 96
+GA+ + R + +LE Y FLSNG++P+P D FQ T+
Sbjct: 198 AIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEMFQETL 257
Query: 97 QAMNIMGMTNED-------------------------YSASLPDNTVAQKIAKLLGLSIT 131
+AM IMG T E+ AS+PDNT AQK+ L+G+++T
Sbjct: 258 EAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVT 317
Query: 132 EMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 191
+ T++ L PRIKVGRD V K+QTKEQ +FA+EA++KA +ER+FRW++ R+N++LD+TKRQ
Sbjct: 318 DFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQ 377
Query: 192 VYFKLINRYGIILCFLFQS 210
L GI+ F+
Sbjct: 378 GASFL----GILDIAGFEI 392
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 135 bits (342), Expect = 1e-37
Identities = 76/249 (30%), Positives = 118/249 (47%), Gaps = 52/249 (20%)
Query: 5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVLHQS-----KGKSSSWKTLTVSS----- 54
G LEQQ+LQANPILEAFGNAKT +N+NSSRF G S +
Sbjct: 162 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRV 221
Query: 55 -----------------SGATPEQRKEFILEDPKTYLFLSNGN-LPVPGVDDAVEFQATV 96
+GAT E++K L P+++ +L+ + + GV D+ EF+ T
Sbjct: 222 VFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITR 281
Query: 97 QAMNIMGMTNEDY------------------------SASLPDNTVAQKIAKLLGLSITE 132
QAM+I+G + E+ A L D T + + G++ +
Sbjct: 282 QAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKTALNAASTVFGVNPSV 341
Query: 133 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQV 192
+ KA ++PRI GRD V + E+ + +A+ KA Y R+F WLV +IN L + ++
Sbjct: 342 LEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERKAY 401
Query: 193 YFKLINRYG 201
+ +++ G
Sbjct: 402 FIGVLDISG 410
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 135 bits (340), Expect = 2e-37
Identities = 82/247 (33%), Positives = 118/247 (47%), Gaps = 53/247 (21%)
Query: 1 MTLEGELEQQLLQANPILEAFGNAKTVKNDNSSRFVLHQ-----SKGKSSSWKTLTVS-- 53
++G LE Q++ ANP+LEAFGNAKTV+NDNSSRF + GK +S T
Sbjct: 163 GKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLE 222
Query: 54 --------------------SSGATPEQRKEFILE-DPKTYLFLSNGNLPVPGVDDAVEF 92
S PE ++ +P Y ++S G + VP +DD E
Sbjct: 223 KSRVTFQLPAERSYHIFYQIMSNKKPELIDMLLITTNPYDYHYVSEGEITVPSIDDQEEL 282
Query: 93 QATVQAMNIMGMTNE-------------------------DYSASLPDNTVAQKIAKLLG 127
AT A++I+G + + + A VA K A L+G
Sbjct: 283 MATDSAIDILGFSADEKTAIYKLTGAVMHYGNLKFKQKQREEQAEPDGTEVADKAAYLMG 342
Query: 128 LSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDR 187
L+ E+ KA PR+ VG + VTK +T +V +V A++KA YE+MF W+V RIN+ LD
Sbjct: 343 LNSAELLKALCYPRVGVGNEAVTKGETVSEVHNSVGALAKAVYEKMFLWMVIRINQQLDT 402
Query: 188 TKRQVYF 194
+ + YF
Sbjct: 403 KQPRQYF 409
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 133 bits (336), Expect = 1e-36
Identities = 79/244 (32%), Positives = 116/244 (47%), Gaps = 53/244 (21%)
Query: 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRFVLHQ-----SKGKSSSWKTLTVSS---- 54
EG LE Q++QANP+LEA+GNAKT +N+NSSRF GK + T
Sbjct: 164 EGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSR 223
Query: 55 ------------------SGATPEQRKEFILED-PKTYLFLSNGNLPVPGVDDAVEFQAT 95
S A PE ++ Y F++ G L V +DD EF+
Sbjct: 224 VTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLC 283
Query: 96 VQAMNIMGMTNE-------------------------DYSASLPDNTVAQKIAKLLGLSI 130
+A +I+G T E + A A+K+A L G++
Sbjct: 284 DEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINA 343
Query: 131 TEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKR 190
++ KA LKP++KVG + VTK Q QV +V A++K+ Y+RMF WLV R+N++LD +
Sbjct: 344 GDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAK 403
Query: 191 QVYF 194
+ Y+
Sbjct: 404 RNYY 407
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 129 bits (326), Expect = 2e-35
Identities = 54/241 (22%), Positives = 94/241 (39%), Gaps = 53/241 (21%)
Query: 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRFVL-----HQSKGKSSS--WKTLTVSSS- 55
E +E+++L +NPI+E+ GNAKT +NDNSSRF + + +T + S
Sbjct: 127 EANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSR 186
Query: 56 -------------------GATPEQRKEFILEDPKTYLFLSNGNLP-VPGVDDAVEFQAT 95
A + K L + + + G P + G+DDA E T
Sbjct: 187 VVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNT 246
Query: 96 VQAMNIMGMTNED-------------------------YSASLPDNTVAQKIAKLLGLSI 130
QA ++G+++ A P + L+G+
Sbjct: 247 RQACTLLGISDSYQMGIFRILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDY 306
Query: 131 TEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKR 190
EM ++ + K +K A +A++K Y +F W+V+ +N++L T +
Sbjct: 307 EEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVNKALHSTVK 366
Query: 191 Q 191
Q
Sbjct: 367 Q 367
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 117 bits (293), Expect = 4e-31
Identities = 56/253 (22%), Positives = 91/253 (35%), Gaps = 62/253 (24%)
Query: 4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRFVLHQS-----KGKSSSWKTLTVSS---- 54
+ + LL +NP+LEAFGNAKT++NDNSSRF + G K
Sbjct: 121 GERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSR 180
Query: 55 ------------------SGATPEQRKE-FILEDPKTYLFLSNGN-LPVPGVDDAVEFQA 94
G + + E + + Y +L V +DD+ EF+
Sbjct: 181 VVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKI 240
Query: 95 TVQAMNIMGMTNED-----------------------------YSASLPDNTVAQKIAKL 125
V+AM +G+ D + + D A
Sbjct: 241 IVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASC 300
Query: 126 LGLSITEMTKAFLKPRIKVGR----DFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRI 181
L ++ A I G ++ Q ++ +A++KA YER+F WLV++I
Sbjct: 301 LKTDQQSLSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKI 360
Query: 182 NRSLDRTKRQVYF 194
N ++ T +
Sbjct: 361 NTIINCTTEKGPV 373
>d2ifra1 b.29.1.20 (A:1-206) Scytalidopepsin B {Fungus (Scytalidium
lignicola) [TaxId: 5539]}
Length = 206
Score = 30.2 bits (68), Expect = 0.13
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 26 TVKNDNSSRFVL---HQSKGKSSSWKTLTVSSSGATPEQRKEFILEDPKT-YLFLSNGNL 81
+V + + + + G+ S K+ + SSG+ EFI+ED + S+
Sbjct: 92 SVTATSDTSGSATLENLTTGQKVS-KSFSNESSGSLCRTNAEFIIEDFEECNSNGSDCEF 150
Query: 82 -PVPGVDDAVEFQATV 96
P AVEF
Sbjct: 151 VPFASFSPAVEFTDCS 166
>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId:
294]}
Length = 404
Score = 30.1 bits (66), Expect = 0.18
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 60 EQRKEFILEDPKTYLFLSNGN----LPVPGVDDAVEFQATVQAMNIMGMTNEDYSASLPD 115
R++F L + YL +GN PV + A A ++ N L +
Sbjct: 17 PLRQQFALPEGVIYL---DGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSE 73
Query: 116 NTVAQKIAKLLGLSITE 132
+ ++A L+G E
Sbjct: 74 -RLGNRLATLIGARDGE 89
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 29.8 bits (66), Expect = 0.24
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Query: 113 LPDNTVAQKIAKLL---GLSITEMTKAFLKPRIKVG----RDFVTKSQTKEQVEFAVEAI 165
L D VAQK A+ L G+ +T F P + G R ++ + T EQ+ AVEA
Sbjct: 335 LGDAVVAQKFARELQKEGIYVT----GFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAF 390
Query: 166 SKA 168
++
Sbjct: 391 TRI 393
>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase
(8-amino-7-oxonanoate synthase, AONS) {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 28.7 bits (63), Expect = 0.57
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 113 LPDNTVAQKIAKLL---GLSITEMTKAFLKPRIKVG----RDFVTKSQTKEQVEFAVEAI 165
+ DN+ A ++A+ L G +T A P + G R +T + + ++ +E +
Sbjct: 324 VGDNSRALQLAEKLRQQGCWVT----AIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVL 379
Query: 166 SKA 168
Sbjct: 380 HGN 382
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 27.9 bits (60), Expect = 0.98
Identities = 7/58 (12%), Positives = 13/58 (22%), Gaps = 7/58 (12%)
Query: 111 ASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKA 168
L + + G + R T E V+ + + A
Sbjct: 294 CRLDSAMIDALLKAGFGFYHDRWGPNVV--RFVTSFAT-----TAEDVDHLLNQVRLA 344
>d2rdza1 a.138.1.3 (A:38-477) Cytochrome c nitrite reductase
{Escherichia coli [TaxId: 562]}
Length = 440
Score = 27.5 bits (60), Expect = 1.3
Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 87 DDAVEF--QATVQAMNIMGMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKA---FLKPR 141
A++ A + ++ + +PD + +K + +GL++ ++ F+K
Sbjct: 366 GTAMDKAADARTKLARLLATKGITHEIQIPDISTKEKAQQAIGLNMEQIKAEKQDFIKTV 425
Query: 142 IK 143
I
Sbjct: 426 IP 427
>g1y43.1 b.29.1.20 (A:1-32,B:3-173) Aspergillopepsin II {Aspergillus
niger [TaxId: 5061]}
Length = 203
Score = 27.1 bits (60), Expect = 1.3
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 26 TVKNDNSSRFVL---HQSKGKSSSWKTLTVSSSGATPEQRKEFILEDPKTYLFLSNGNLP 82
TV+ + S + + G+S + T + + G E E+I+ED +G+
Sbjct: 96 TVEATSKSSGSATVENLTTGQSVT-HTFSGNVEGDLCETNAEWIVEDF------ESGDSL 148
Query: 83 VPGVD-DAVEFQ 93
V D +V F
Sbjct: 149 VAFADFGSVTFT 160
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 163
Score = 26.7 bits (59), Expect = 1.6
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 131 TEMTKAFLKP-----RIKVGRDFVTKSQTKEQVEFAVEAISKACY 170
M AF K R++ G T E E EA +A
Sbjct: 111 DGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYN 155
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase
{Thermus thermophilus [TaxId: 274]}
Length = 98
Score = 25.5 bits (56), Expect = 2.3
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 179 NRINRSLDRTKRQVYFKLINRYGIILCFLFQSIVK 213
+ ++ R +R+ L R+G + +F S+ +
Sbjct: 2 SHMDLETLRARREAVLSLCARHGAVRVRVFGSVAR 36
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 26.2 bits (56), Expect = 2.8
Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Query: 86 VDDAVEFQATVQAMNIMGMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVG 145
VD A + + + ++ A++P + KI + +S + + F G
Sbjct: 88 VDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTG 147
Query: 146 RDFVTKSQTKEQVE--FAVEAISKACYERMFRWLVNRIN 182
+ V+ + + F + + Y FRW+ I+
Sbjct: 148 KGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 186
>d1rvxa_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
strains [TaxId: 11320]}
Length = 323
Score = 25.9 bits (57), Expect = 3.7
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 44 SSSWKTLTVSSSGATPEQ-----RKEF---ILEDPKTYLFLSNGNLPVP 84
+S++ P+ R + +L+ T +F +NGNL P
Sbjct: 202 TSNYNRRFTPEIAERPKVRDQAGRMNYYWTLLKPGDTIIFEANGNLIAP 250
>d1bu8a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 114
Score = 24.9 bits (54), Expect = 4.2
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 7/43 (16%)
Query: 36 VLHQSKGKSSSWKTLTVSSSGATPEQRKEFILEDPKTYLFLSN 78
L +K + TL Q D K Y F S+
Sbjct: 65 FLWNNKVINLFRPTLGA-------SQITVQSGVDGKEYNFCSS 100
>d1aoca_ g.17.1.5 (A:) Coagulogen {Japanese horseshoe crab
(Tachypleus tridentatus) [TaxId: 6853]}
Length = 175
Score = 25.4 bits (55), Expect = 4.3
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 144 VGRDFVTKSQTKEQVEFAVEAISK 167
+GR + ++ K+++E AVEA+++
Sbjct: 16 LGRTQIVTTEIKDKIEKAVEAVAQ 39
>d3bzka2 a.60.2.6 (A:564-636) Transcriptional accessory factor Tex
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 73
Score = 23.9 bits (52), Expect = 5.8
Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 8/61 (13%)
Query: 115 DNT--------VAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAIS 166
D + + Q+IA I + + + F ++ V ++ +
Sbjct: 5 DASAVHPETYPLVQRIAADTERDIRSLIGDSAFLKRLDPKKFTDETFGLPTVTDILKELD 64
Query: 167 K 167
K
Sbjct: 65 K 65
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 25.0 bits (54), Expect = 7.5
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 157 QVEFAVEAISKA 168
QVE+A +AI++
Sbjct: 23 QVEYAFKAINQG 34
>d1dk0a_ d.35.1.1 (A:) Heme-binding protein A (HasA) {Serratia
marcescens [TaxId: 615]}
Length = 173
Score = 24.4 bits (53), Expect = 8.7
Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 4/91 (4%)
Query: 19 EAFGNAKTVKNDNSSRFVLHQSKGKSSSWKTLTVSSSGATPEQRKEFILEDPKTYLFLSN 78
FG+ + + S G + + + +T Q F+ TY +
Sbjct: 24 STFGDVNHTNGNVTDAN----SGGFYGGSLSGSQYAISSTANQVTAFVAGGNLTYTLFNE 79
Query: 79 GNLPVPGVDDAVEFQATVQAMNIMGMTNEDY 109
+ G D++ F + + + +
Sbjct: 80 PAHTLYGQLDSLSFGDGLSGGDTSPYSIQVP 110
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.368
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 724,779
Number of extensions: 31489
Number of successful extensions: 179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 29
Length of query: 213
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 131
Effective length of database: 1,281,736
Effective search space: 167907416
Effective search space used: 167907416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)