BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2476
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4KLF8|ARPC5_RAT Actin-related protein 2/3 complex subunit 5 OS=Rattus norvegicus
GN=Arpc5 PE=1 SV=3
Length = 151
Score = 156 bits (394), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 81/151 (53%), Positives = 109/151 (72%), Gaps = 3/151 (1%)
Query: 1 MAKNTSSSA-FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTV 59
M+KNT SSA FRK+DVD+Y+E+ + +EE G Q AG DE E+ S L QG AL+
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQ--AGPDEGEVDSCLRQGNMTAALQAA 58
Query: 60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
LKN P+ +K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS
Sbjct: 59 LKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118
Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
+ SS+ LL WHEK A GG+GSIVRVLT K
Sbjct: 119 DNSSAMLLQWHEKALAAGGVGSIVRVLTARK 149
>sp|Q5R516|ARPC5_PONAB Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii
GN=ARPC5 PE=2 SV=3
Length = 151
Score = 156 bits (394), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 81/151 (53%), Positives = 109/151 (72%), Gaps = 3/151 (1%)
Query: 1 MAKNTSSSA-FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTV 59
M+KNT SSA FRK+DVD+Y+E+ + +EE G Q AG DE E+ S L QG AL+
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQ--AGPDEGEVDSCLRQGNMTAALQAA 58
Query: 60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
LKN P+ +K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS
Sbjct: 59 LKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118
Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
+ SS+ LL WHEK A GG+GSIVRVLT K
Sbjct: 119 DNSSAMLLQWHEKALAAGGVGSIVRVLTARK 149
>sp|O15511|ARPC5_HUMAN Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens
GN=ARPC5 PE=1 SV=3
Length = 151
Score = 156 bits (394), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 81/151 (53%), Positives = 109/151 (72%), Gaps = 3/151 (1%)
Query: 1 MAKNTSSSA-FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTV 59
M+KNT SSA FRK+DVD+Y+E+ + +EE G Q AG DE E+ S L QG AL+
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQ--AGPDEGEVDSCLRQGNMTAALQAA 58
Query: 60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
LKN P+ +K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS
Sbjct: 59 LKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118
Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
+ SS+ LL WHEK A GG+GSIVRVLT K
Sbjct: 119 DNSSAMLLQWHEKALAAGGVGSIVRVLTARK 149
>sp|Q9CPW4|ARPC5_MOUSE Actin-related protein 2/3 complex subunit 5 OS=Mus musculus
GN=Arpc5 PE=2 SV=3
Length = 151
Score = 155 bits (392), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 81/151 (53%), Positives = 109/151 (72%), Gaps = 3/151 (1%)
Query: 1 MAKNTSSSA-FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTV 59
M+KNT SSA FRK+DVD+Y+E+ + +EE G Q AG DE E+ S L QG AL+
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQ--AGPDEGEVDSCLRQGNMTAALQAA 58
Query: 60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
LKN P+ +K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS
Sbjct: 59 LKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118
Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
+ SS+ LL WHEK A GG+GSIVRVLT K
Sbjct: 119 DNSSAVLLQWHEKALAAGGVGSIVRVLTARK 149
>sp|Q3SYX9|ARPC5_BOVIN Actin-related protein 2/3 complex subunit 5 OS=Bos taurus GN=ARPC5
PE=1 SV=3
Length = 151
Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 80/151 (52%), Positives = 108/151 (71%), Gaps = 3/151 (1%)
Query: 1 MAKNTSSSA-FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTV 59
M+KNT SSA FRK+DV +Y+E+ + +EE G Q AG DE E+ S L QG AL+
Sbjct: 1 MSKNTVSSARFRKVDVGEYDENKFVDEEDGGDGQ--AGPDEGEVDSCLRQGNMTAALQAA 58
Query: 60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
LKN P+ +K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS
Sbjct: 59 LKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118
Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
+ SS+ LL WHEK A GG+GSIVRVLT K
Sbjct: 119 DNSSAVLLQWHEKALAAGGVGSIVRVLTARK 149
>sp|A1L108|ARP5L_RAT Actin-related protein 2/3 complex subunit 5-like protein OS=Rattus
norvegicus GN=Arpc5l PE=1 SV=2
Length = 153
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/151 (48%), Positives = 103/151 (68%), Gaps = 1/151 (0%)
Query: 1 MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLG-AGVDESEILSLLNQGKHQDALKTV 59
MA+NT SS FR++D+D+++E+ + +E + G G D E+ LL QG A
Sbjct: 1 MARNTLSSRFRRVDIDEFDENKFVDEHEEAAAASGEPGPDPCEVDGLLRQGDMLRAFHAA 60
Query: 60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
L+N+P+ +KNQ VK+ A + LKVL KSS++++ V +LD++ +D LMKYIYKGFE P+
Sbjct: 61 LRNSPINTKNQAVKERAQGIVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPT 120
Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
E SS+ LL WHEK A+GGLGSI+RVLT K
Sbjct: 121 ENSSAVLLQWHEKALAVGGLGSIIRVLTARK 151
>sp|Q5R4M1|ARP5L_PONAB Actin-related protein 2/3 complex subunit 5-like protein OS=Pongo
abelii GN=ARPC5L PE=2 SV=1
Length = 153
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/151 (48%), Positives = 104/151 (68%), Gaps = 1/151 (0%)
Query: 1 MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLG-AGVDESEILSLLNQGKHQDALKTV 59
MA+NT SS FR++D+D+++E+ + +E++ G D SE+ LL QG A
Sbjct: 1 MARNTLSSRFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHAA 60
Query: 60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
L+N+P+ +KNQ VK+ A + LKVL KSS++++ V +LD++ +D LMKYIYKGFE P+
Sbjct: 61 LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPT 120
Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
E SS+ LL WHEK A+GGLGSI+RVLT K
Sbjct: 121 ENSSAVLLQWHEKALAVGGLGSIIRVLTARK 151
>sp|Q9BPX5|ARP5L_HUMAN Actin-related protein 2/3 complex subunit 5-like protein OS=Homo
sapiens GN=ARPC5L PE=1 SV=1
Length = 153
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/151 (48%), Positives = 104/151 (68%), Gaps = 1/151 (0%)
Query: 1 MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLG-AGVDESEILSLLNQGKHQDALKTV 59
MA+NT SS FR++D+D+++E+ + +E++ G D SE+ LL QG A
Sbjct: 1 MARNTLSSRFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHAA 60
Query: 60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
L+N+P+ +KNQ VK+ A + LKVL KSS++++ V +LD++ +D LMKYIYKGFE P+
Sbjct: 61 LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPT 120
Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
E SS+ LL WHEK A+GGLGSI+RVLT K
Sbjct: 121 ENSSAVLLQWHEKALAVGGLGSIIRVLTARK 151
>sp|Q5E963|ARP5L_BOVIN Actin-related protein 2/3 complex subunit 5-like protein OS=Bos
taurus GN=ARPC5L PE=2 SV=1
Length = 153
Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/151 (48%), Positives = 104/151 (68%), Gaps = 1/151 (0%)
Query: 1 MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGV-DESEILSLLNQGKHQDALKTV 59
MA+NT SS FR++D+D+++E+ + +E++ G D SE+ LL QG A
Sbjct: 1 MARNTLSSRFRRVDIDEFDENKFVDEQEEAAAAAGEPGPDPSEVDGLLRQGDMLRAFHAA 60
Query: 60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
L+N+P+ +KNQ VK+ A + LKVL KSS++++ V +LD++ +D LMKYIYKGFE P+
Sbjct: 61 LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPT 120
Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
E SS+ LL WHEK A+GGLGSI+RVLT K
Sbjct: 121 ENSSAVLLQWHEKALAVGGLGSIIRVLTARK 151
>sp|Q9D898|ARP5L_MOUSE Actin-related protein 2/3 complex subunit 5-like protein OS=Mus
musculus GN=Arpc5l PE=1 SV=1
Length = 153
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 102/151 (67%), Gaps = 1/151 (0%)
Query: 1 MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGV-DESEILSLLNQGKHQDALKTV 59
MA+NT SS FR++D+D+++E+ + +E + G D E+ LL QG A
Sbjct: 1 MARNTLSSRFRRVDIDEFDENKFVDEHEEAAAAAGEPGPDPCEVDGLLRQGDMLRAFHAA 60
Query: 60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
L+N+P+ +KNQ VK+ A + LKVL KSS++++ V +LD++ +D LMKYIYKGFE P+
Sbjct: 61 LRNSPINTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKPT 120
Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
E SS+ LL WHEK A+GGLGSI+RVLT K
Sbjct: 121 ENSSAVLLQWHEKALAVGGLGSIIRVLTARK 151
>sp|O96626|ARPC5_DICDI Actin-related protein 2/3 complex subunit 5 OS=Dictyostelium
discoideum GN=arcE PE=1 SV=1
Length = 138
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Query: 40 ESEILSLLNQGKHQDALKTVLKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNL 99
E E+ LN GK QDAL L + P+ +K +KD + L +L + K ++ +V L
Sbjct: 28 EKEVTKALNAGKPQDALNVALADPPIYTKTGAIKDQNATIVLNLLGSFKDKDVETSVETL 87
Query: 100 DQDLLDTLMKYIYKGFEIPSEKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
+ D LD LMKY+Y+G + + ++S WHE V GG G+I+RV+++ K
Sbjct: 88 NDDQLDILMKYVYRG--LATGENSPIFFKWHECVLKKGGAGTIIRVISEKK 136
>sp|P91167|ARPC5_CAEEL Probable actin-related protein 2/3 complex subunit 5
OS=Caenorhabditis elegans GN=C46H11.3 PE=3 SV=1
Length = 146
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 83/143 (58%), Gaps = 4/143 (2%)
Query: 10 FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVLKNAPLGSKN 69
++K +VD ++ ++ E+ Q E G V E + L + + AL++VL N P G
Sbjct: 6 YKKYNVDIFHPAHF-EDIQEESADCGPNVQE--VRQFLESNRLEYALQSVLLNPPFGHSE 62
Query: 70 QHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKSSS-HLLT 128
Q +K+ A+ L +V+ A + + ++E+V L + D LMKYIYK ++ S+ ++ LL
Sbjct: 63 QELKNRAVLLVAEVIHAFRQTDIEESVHKLSNENGDILMKYIYKAMQLCSDSATCLSLLL 122
Query: 129 WHEKVFAIGGLGSIVRVLTDSKR 151
WH ++ + G GSIVRVL++ +R
Sbjct: 123 WHSQLVSKFGQGSIVRVLSNRQR 145
>sp|Q10316|ARPC5_SCHPO Actin-related protein 2/3 complex subunit 5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=arc5 PE=1 SV=1
Length = 152
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 7/144 (4%)
Query: 10 FRKIDVDQYNEDNYKEEEQGEV-----PQLGAGVDE--SEILSLLNQGKHQDALKTVLKN 62
FR +DVD E E++ + Q+ A V + + S + G LKT+L
Sbjct: 3 FRTLDVDSITEPVLTEQDIFPIRNETAEQVQAAVSQLIPQARSAIQTGNALQGLKTLLSY 62
Query: 63 APLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKS 122
P G+ Q V+ LN + VL I+++ + V + +D ++ +IY+G P +
Sbjct: 63 VPYGNDVQEVRTQYLNAFVDVLSNIRAADIPAFVKECSTEEIDNIVNFIYRGLANPQAYN 122
Query: 123 SSHLLTWHEKVFAIGGLGSIVRVL 146
SS LL WHEKV I G+G IVRVL
Sbjct: 123 SSVLLNWHEKVVEISGIGCIVRVL 146
>sp|P40518|ARPC5_YEAST Actin-related protein 2/3 complex subunit 5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ARC15 PE=1
SV=1
Length = 154
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 7/148 (4%)
Query: 10 FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQ----GKHQDALKTV--LKNA 63
+R+ID+D ++ ++ + VP V E+ +NQ D+L V L
Sbjct: 5 WRRIDIDAFDPESGRLTAADLVPPYETTVTLQELQPRMNQLRSLATSGDSLGAVQLLTTD 64
Query: 64 PLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIP-SEKS 122
P S + K+ L+ L ++ + + + NL D L+KY+YKG +P +K
Sbjct: 65 PPYSADAPTKEQYFKSVLEALTQVRQADIGNVIKNLSDSQRDVLVKYLYKGMSVPQGQKQ 124
Query: 123 SSHLLTWHEKVFAIGGLGSIVRVLTDSK 150
LL W E++ + G+ IV ++D +
Sbjct: 125 GGVLLAWLERITQVSGVTPIVHYISDRR 152
>sp|Q3SHT1|ASSY_THIDA Argininosuccinate synthase OS=Thiobacillus denitrificans (strain
ATCC 25259) GN=argG PE=3 SV=2
Length = 409
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 13/147 (8%)
Query: 14 DVDQYNEDNYKEEEQGEVPQL-GAGVDESEILSLLNQ--GKHQDALKTVLKNAPLGSKNQ 70
D +Y E Y +G+V + G + E+L+ LN+ GKH +++N +G K++
Sbjct: 220 DAAEYIELTYA---KGDVVAIDGQQMPAHEVLAKLNELGGKHGIGRLDLVENRYVGMKSR 276
Query: 71 HVKDS-ALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKSSSHLLTW 129
++ + LK AI+S +D V++L DL+ IY G+ E+ + +L
Sbjct: 277 GCYETPGGTILLKAHRAIESITLDREVAHLKDDLMPRYASLIYNGYWWAPERRALQVLID 336
Query: 130 HEKVFAIGGL------GSIVRVLTDSK 150
H + G + G+++ V DSK
Sbjct: 337 HTQAHVNGTVRLKLYKGNVIVVGRDSK 363
>sp|Q82UP5|ASSY_NITEU Argininosuccinate synthase OS=Nitrosomonas europaea (strain ATCC
19718 / NBRC 14298) GN=argG PE=3 SV=1
Length = 404
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 25 EEEQGEVPQL-GAGVDESEILSLLNQ--GKHQDALKTVLKNAPLGSKNQHVKDS-ALNLT 80
E E+G++ L G + + IL+ LNQ GKH +++N +G K++ ++ +
Sbjct: 225 EYERGDIVALNGERLSPAAILTRLNQLGGKHGIGRLDLVENRYVGMKSRGCYETPGGTIM 284
Query: 81 LKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEK 121
L+ AI+S +D V++L DL+ IY G+ E+
Sbjct: 285 LRAHRAIESITLDREVAHLKDDLMPRYAALIYNGYWWSPER 325
>sp|Q0AEE4|ASSY_NITEC Argininosuccinate synthase OS=Nitrosomonas eutropha (strain C91)
GN=argG PE=3 SV=1
Length = 404
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 19 NEDNYK--EEEQGEVPQL-GAGVDESEILSLLNQ--GKHQDALKTVLKNAPLGSKNQHVK 73
NE Y E E+G++ L G + + +L+ LNQ GKH +++N +G K++
Sbjct: 217 NEPEYLDLEYERGDIVALNGEKLSPAAVLTKLNQLGGKHGIGRLDLVENRYVGMKSRGCY 276
Query: 74 DS-ALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEK 121
++ + L+ AI+S +D V++L DL+ IY G+ E+
Sbjct: 277 ETPGGTIMLRAHRAIESITLDREVAHLKDDLMPRYAALIYNGYWWSPER 325
>sp|Q47BM0|ASSY_DECAR Argininosuccinate synthase OS=Dechloromonas aromatica (strain RCB)
GN=argG PE=3 SV=1
Length = 468
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 35 GAGVDESEILSLLNQ--GKHQDALKTVLKNAPLGSKNQHVKDS-ALNLTLKVLLAIKSSQ 91
G + E+L+LLN+ GKH +++N +G K++ ++ + L+ AI+S
Sbjct: 239 GKKLKAHEVLALLNELGGKHGIGRLDLVENRYVGMKSRGCYETPGGTILLRAHRAIESVT 298
Query: 92 MDETVSNLDQDLLDTLMKYIYKGFEIPSEKSSSHLLTWHEKVFAIGGL------GSIVRV 145
+D V++L DL+ +Y G+ E+ + +L H + G + G+++ V
Sbjct: 299 LDREVAHLKDDLMPRYASLVYNGYWWSPERKALQVLIDHTQQTVNGVVRLKLYKGNVIVV 358
Query: 146 LTDSK 150
DSK
Sbjct: 359 GRDSK 363
>sp|A1K7J8|ASSY_AZOSB Argininosuccinate synthase OS=Azoarcus sp. (strain BH72) GN=argG
PE=3 SV=1
Length = 409
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 10/136 (7%)
Query: 25 EEEQGEVPQL-GAGVDESEILSLLNQ--GKHQDALKTVLKNAPLGSKNQHVKDS-ALNLT 80
E E+G++ + G + E+L+ LN+ GKH +++N +G K++ ++ +
Sbjct: 228 EFEKGDLVAINGQRLKAHELLAKLNELGGKHGIGRLDLVENRYVGMKSRGCYETPGGTIL 287
Query: 81 LKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKSSSHLLTWHEKVFAIGGL- 139
L+ AI+S +D V++L DL+ IY G+ E+ + L H + G +
Sbjct: 288 LRAHRAIESITLDREVAHLKDDLMPRYASMIYNGYWWSPERQALQALVDHTQQTVNGWVR 347
Query: 140 -----GSIVRVLTDSK 150
G+++ V DSK
Sbjct: 348 IKLYKGNVIVVARDSK 363
>sp|Q13UR1|ASSY_BURXL Argininosuccinate synthase OS=Burkholderia xenovorans (strain
LB400) GN=argG PE=3 SV=1
Length = 408
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 35 GAGVDESEILSLLNQ--GKHQDALKTVLKNAPLGSKNQHVKDS-ALNLTLKVLLAIKSSQ 91
G + +E+L+ LN+ GKH +++N +G K++ ++ + LK I+S
Sbjct: 239 GKRLSPAEMLTELNRLGGKHGIGRLDLVENRYVGMKSRGCYETPGGTIMLKAHRGIESIT 298
Query: 92 MDETVSNLDQDLLDTLMKYIYKGFEIPSEKSSSHLLTWHEKVFAIGGL------GSIVRV 145
+D V++L DL+ IY G+ E+ + +L H + G + GS+ V
Sbjct: 299 LDREVAHLKDDLMPRYAALIYNGYWWSPERRALQVLIDHTQEKVNGWVRVKLYKGSVSVV 358
Query: 146 LTDSK 150
DSK
Sbjct: 359 ARDSK 363
>sp|B2SY63|ASSY_BURPP Argininosuccinate synthase OS=Burkholderia phytofirmans (strain DSM
17436 / PsJN) GN=argG PE=3 SV=1
Length = 408
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 35 GAGVDESEILSLLNQ--GKHQDALKTVLKNAPLGSKNQHVKDS-ALNLTLKVLLAIKSSQ 91
G + +E+L+ LN+ GKH +++N +G K++ ++ + LK I+S
Sbjct: 239 GKRLSAAEMLTELNRLGGKHGIGRLDLVENRYVGMKSRGCYETPGGTIMLKAHRGIESIT 298
Query: 92 MDETVSNLDQDLLDTLMKYIYKGFEIPSEKSSSHLLTWHEKVFAIGGL------GSIVRV 145
+D V++L DL+ IY G+ E+ + +L H + G + GS+ V
Sbjct: 299 LDREVAHLKDDLMARYASLIYNGYWWSPERRAIQVLIDHTQEKVNGWVRVKLYKGSVSVV 358
Query: 146 LTDSK 150
DSK
Sbjct: 359 ARDSK 363
>sp|Q5P0Z7|ASSY_AROAE Argininosuccinate synthase OS=Aromatoleum aromaticum (strain EbN1)
GN=argG PE=3 SV=1
Length = 409
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 25 EEEQGEVPQL-GAGVDESEILSLLNQ--GKHQDALKTVLKNAPLGSKNQHVKDS-ALNLT 80
E E+G++ + G + E+L+ LN+ GKH +++N +G K++ ++ +
Sbjct: 228 EFERGDLVAINGTRMKAHELLAKLNELGGKHGIGRLDLVENRYVGMKSRGCYETPGGTIL 287
Query: 81 LKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKSSSHLL 127
L+ AI+S +D V++L DL+ IY G+ E+ + L
Sbjct: 288 LRAHRAIESVTLDREVAHLKDDLMPRYASLIYNGYWWSPERRALQAL 334
>sp|Q1H0L1|ASSY_METFK Argininosuccinate synthase OS=Methylobacillus flagellatus (strain
KT / ATCC 51484 / DSM 6875) GN=argG PE=3 SV=1
Length = 406
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 35 GAGVDESEILSLLNQ--GKHQDALKTVLKNAPLGSKNQHVKDS-ALNLTLKVLLAIKSSQ 91
G + E+L+ LN+ GKH +++N +G K++ ++ + LK AI+S
Sbjct: 237 GKTLKPHELLAELNRLGGKHGIGRLDLVENRYVGMKSRGCYETPGGTILLKAHRAIESIT 296
Query: 92 MDETVSNLDQDLLDTLMKYIYKGFEIPSEK 121
+D V++L DL+ IY G+ E+
Sbjct: 297 LDREVAHLKDDLMPRYASMIYNGYWWSPER 326
>sp|Q3A1V1|ASSY_PELCD Argininosuccinate synthase OS=Pelobacter carbinolicus (strain DSM
2380 / Gra Bd 1) GN=argG PE=3 SV=1
Length = 406
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 35 GAGVDESEILSLLNQ--GKHQDALKTVLKNAPLGSKNQHVKDSALNLTLK-VLLAIKSSQ 91
G + +++L+ LN+ GKH +++N +G K++ V ++ L+ ++
Sbjct: 237 GESLSPAQLLAHLNELGGKHGIGRADIMENRFVGMKSRGVYETPGGTILEEAHRGVEQIT 296
Query: 92 MDETVSNLDQDLLDTLMKYIYKGFEIPSEKSS 123
MD V NL L+ +Y GF E+ +
Sbjct: 297 MDREVLNLRDSLIPRYATMVYNGFWFAPEREA 328
>sp|C6E6Y6|ASSY_GEOSM Argininosuccinate synthase OS=Geobacter sp. (strain M21) GN=argG
PE=3 SV=1
Length = 406
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 35 GAGVDESEILSLLNQ--GKHQDALKTVLKNAPLGSKNQHVKDSALNLTLK-VLLAIKSSQ 91
G + +E+L+ LN G+H +L+N +G K++ V ++ L+ +A++
Sbjct: 236 GVRMSPAELLAHLNTIGGEHGIGRVDLLENRSVGMKSRGVYETPGGTILREAHMAVEQIT 295
Query: 92 MDETVSNLDQDLLDTLMKYIYKGFEIPSEK 121
MD V +L L+ + IY G+ E+
Sbjct: 296 MDREVMHLRDSLIPRYAEMIYNGYWFSPER 325
>sp|B5ED13|ASSY_GEOBB Argininosuccinate synthase OS=Geobacter bemidjiensis (strain Bem /
ATCC BAA-1014 / DSM 16622) GN=argG PE=3 SV=1
Length = 406
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 35 GAGVDESEILSLLNQ--GKHQDALKTVLKNAPLGSKNQHVKDSALNLTLK-VLLAIKSSQ 91
G + +E+L+ LN G+H +L+N +G K++ V ++ L+ +A++
Sbjct: 236 GVRMSPAELLAHLNTIGGEHGIGRVDLLENRSVGMKSRGVYETPGGTILREAHMAVEQIT 295
Query: 92 MDETVSNLDQDLLDTLMKYIYKGFEIPSEK 121
MD V +L L+ + IY G+ E+
Sbjct: 296 MDREVMHLRDSLIPRYAEMIYNGYWFSPER 325
>sp|P42478|EFTU_SPIAU Elongation factor Tu (Fragment) OS=Spirochaeta aurantia GN=tuf PE=3
SV=1
Length = 375
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 66 GSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKSSSH 125
G K ++ SA A S D + +LLDT+ KY F IP
Sbjct: 164 GEKTPFIRGSAF--------AAMSKPDDPAATKCLDELLDTMDKY----FVIPERALDKP 211
Query: 126 LLTWHEKVFAIGGLGSIV 143
L E VF+I G G++V
Sbjct: 212 FLMPIEDVFSISGRGTVV 229
>sp|Q66I24|ASSY_DANRE Argininosuccinate synthase OS=Danio rerio GN=ass1 PE=2 SV=1
Length = 414
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 42 EILSLLNQ--GKHQDALKTVLKNAPLGSKNQHVKDS-ALNLTLKVLLAIKSSQMDETVSN 98
EI LN+ GKH +++N +G K++ + ++ + L+ L I++ MD V
Sbjct: 248 EIFCYLNEIGGKHGVGRIDIVENRFIGMKSRGIYETPGGTVLLQAHLDIETFTMDREVRK 307
Query: 99 LDQDLLDTLMKYIYKGFEIPSE 120
+ Q L + IY GF E
Sbjct: 308 IKQSLGIKFSELIYNGFWFSPE 329
>sp|B8FH30|ASSY_DESAA Argininosuccinate synthase OS=Desulfatibacillum alkenivorans
(strain AK-01) GN=argG PE=3 SV=1
Length = 400
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 16 DQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQ--GKHQDALKTVLKNAPLGSKNQHVK 73
DQ E + E+ V G + + +L+ LN+ GKH +++N +G K++ V
Sbjct: 216 DQPEEVLIQFEQGNPVAVNGEKLSPANLLAKLNELGGKHGVGRMDIVENRFVGMKSRGVY 275
Query: 74 DSALNLTLKVL-LAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSE 120
++ L++ + +++ MD V++L L+ + +Y GF E
Sbjct: 276 ETPGGTILRIAHMNMETLTMDREVAHLRDSLIPKYAELVYNGFWFSPE 323
>sp|Q3J9C8|ASSY_NITOC Argininosuccinate synthase OS=Nitrosococcus oceani (strain ATCC
19707 / NCIMB 11848) GN=argG PE=3 SV=1
Length = 405
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 35 GAGVDESEILSLLNQ--GKHQDALKTVLKNAPLGSKNQHVKDS-ALNLTLKVLLAIKSSQ 91
G + +++L LNQ KH +++N +G K++ ++ A + LK A++S
Sbjct: 236 GEVLSPAKVLESLNQLGSKHGIGRLDLVENRYVGMKSRGCYETPAGTIMLKAHRALESLT 295
Query: 92 MDETVSNLDQDLLDTLMKYIYKGFEIPSEKS 122
+D V++L +L+ IY G+ E+S
Sbjct: 296 LDREVTHLKDELMPRYANLIYNGYWWSPERS 326
>sp|Q9P2F6|RHG20_HUMAN Rho GTPase-activating protein 20 OS=Homo sapiens GN=ARHGAP20 PE=1
SV=2
Length = 1191
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 1 MAKNTSSSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVL 60
AK+ + A+ K + N D E +P LG E + +N GK + +
Sbjct: 201 FAKDIGNCAYSKT-ITVMNSDTANEVINMSLPMLGITGSERDYQLWVNSGKEEAPYPLIG 259
Query: 61 KNAPLGSKNQHVKDSAL 77
P G K H++DSAL
Sbjct: 260 HEYPYGIKMSHLRDSAL 276
>sp|A7I281|ASSY_CAMHC Argininosuccinate synthase OS=Campylobacter hominis (strain ATCC
BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=argG PE=3
SV=1
Length = 406
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 35 GAGVDESEILSLLNQ--GKHQDALKTVLKNAPLGSKNQHVKDS-ALNLTLKVLLAIKSSQ 91
G + E+L+ LN KH +++N +G K++ ++ + LK AI+S
Sbjct: 238 GKNLKPHEMLNELNNLGAKHGIGRLDIVENRFVGMKSRGCYETPGGTIMLKAHRAIESIT 297
Query: 92 MDETVSNLDQDLLDTLMKYIYKGFEIPSEKS 122
+D+ ++L +L+ + IY GF E+S
Sbjct: 298 IDKGAAHLKDELMPKYAELIYNGFWFSPERS 328
>sp|Q10105|GCN1_SCHPO Translational activator gcn1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=gcn1 PE=3 SV=1
Length = 2670
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 22 NYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVLKNAPLGSKNQHVKDSALNLTL 81
N E EV + GA SEIL+ L + +D L +LKN S H+++S ++L +
Sbjct: 1686 NVLRSECSEVDRQGAAQGLSEILAGLGLARLEDVLPEILKNT--SSPVPHIRESFISLLI 1743
>sp|A0RP84|ASSY_CAMFF Argininosuccinate synthase OS=Campylobacter fetus subsp. fetus
(strain 82-40) GN=argG PE=3 SV=1
Length = 407
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 42 EILSLLNQ--GKHQDALKTVLKNAPLGSKNQHVKDS-ALNLTLKVLLAIKSSQMDETVSN 98
EIL+ LN+ KH +++N +G K++ ++ + LK AI+S MD ++
Sbjct: 246 EILTELNRLGAKHGIGRLDIVENRYVGMKSRGCYETPGGTIMLKAHRAIESITMDREAAH 305
Query: 99 LDQDLLDTLMKYIYKGFEIPSEK 121
L +L+ +Y G+ E+
Sbjct: 306 LKDELMPKYASLVYNGYWFSPER 328
>sp|Q75R62|NQRC_VIBAN Na(+)-translocating NADH-quinone reductase subunit C OS=Vibrio
anguillarum GN=nqrC PE=3 SV=1
Length = 255
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 9 AFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESE-----ILSLLNQGKHQDALKTVLKNA 63
AF ++ D EQGE P LG V+ + L HQ A+K V A
Sbjct: 149 AFVAVETDGNTVSGITYYEQGETPGLGGEVENPSWRAQFVGKKLFDDNHQPAIKVVKGGA 208
Query: 64 PLGSKNQHVKDSALNLTL 81
P GS +H D TL
Sbjct: 209 PAGS--EHGVDGLSGATL 224
>sp|A4SZQ2|ASSY_POLSQ Argininosuccinate synthase OS=Polynucleobacter necessarius subsp.
asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=argG PE=3 SV=1
Length = 410
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 35 GAGVDESEILSLLNQ--GKHQDALKTVLKNAPLGSKNQHVKDS-ALNLTLKVLLAIKSSQ 91
G E+L+ LN+ GKH +++N +G K++ ++ + LK I+S
Sbjct: 239 GKAYKPHELLAELNRIGGKHGIGRLDLVENRFVGMKSRGCYETPGGTILLKAHRGIESIT 298
Query: 92 MDETVSNLDQDLLDTLMKYIYKGFEIPSEK 121
+D V++L DL+ IY G E+
Sbjct: 299 LDREVAHLKDDLMPRYASLIYNGLWWAPER 328
>sp|A4VIU7|ASSY_PSEU5 Argininosuccinate synthase OS=Pseudomonas stutzeri (strain A1501)
GN=argG PE=3 SV=1
Length = 405
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 14 DVDQYNEDNYKEEEQGEVPQL-GAGVDESEILSLLNQ--GKHQDALKTVLKNAPLGSKNQ 70
D Y E Y+ +G++ + G + +++L+ LN+ G++ +++N +G K++
Sbjct: 217 DTPTYIELTYR---KGDIVAIDGKDMTPAQVLAELNRIGGENGIGRLDIVENRYVGMKSR 273
Query: 71 HVKDS-ALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKS 122
++ + LK AI+S +D V++L +L+ IY G+ E+S
Sbjct: 274 GCYETPGGTIMLKAHRAIESITLDREVAHLKDELMPKYASLIYNGYWWSPERS 326
>sp|Q1GYE8|RF1_METFK Peptide chain release factor 1 OS=Methylobacillus flagellatus
(strain KT / ATCC 51484 / DSM 6875) GN=prfA PE=3 SV=1
Length = 360
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 41 SEILSLLNQGKHQDALKTVLKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNL- 99
SE SL+ G + ++T N P G + D +NLTL + AI MDE ++ L
Sbjct: 292 SERRSLIGSGDRSERIRTY--NYPQG----RITDHRINLTLYKIDAITEGDMDELINALA 345
Query: 100 ---DQDLLDTL 107
DLL TL
Sbjct: 346 AEHQADLLATL 356
>sp|A5GDA4|ASSY_GEOUR Argininosuccinate synthase OS=Geobacter uraniireducens (strain Rf4)
GN=argG PE=3 SV=1
Length = 406
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 35 GAGVDESEILSLLN--QGKHQDALKTVLKNAPLGSKNQHVKDSALNLTLK-VLLAIKSSQ 91
G + +++L+ LN G+H +L+N +G K++ V ++ L+ +A++
Sbjct: 236 GEAMSPAQLLAHLNFIGGEHGIGRVDLLENRSVGMKSRGVYETPGGTILREAHMAVEQIT 295
Query: 92 MDETVSNLDQDLLDTLMKYIYKGFEIPSEK 121
MD V +L L+ + +Y G+ E+
Sbjct: 296 MDREVMHLRDSLIPRYAEMVYNGYWFSPER 325
>sp|Q7MIC9|NQRC_VIBVY Na(+)-translocating NADH-quinone reductase subunit C OS=Vibrio
vulnificus (strain YJ016) GN=nqrC PE=3 SV=2
Length = 255
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 9 AFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGK-----HQDALKTVLKNA 63
AF ++ D EQGE P LG V+ + K H+ A+K V A
Sbjct: 149 AFVAVETDGNTVSGITYYEQGETPGLGGEVENPSWRAQFVGKKLFDENHKPAIKVVKGGA 208
Query: 64 PLGSKNQHVKDSALNLTL 81
P+GS +H D TL
Sbjct: 209 PVGS--EHGVDGLSGATL 224
>sp|Q8DBJ4|NQRC_VIBVU Na(+)-translocating NADH-quinone reductase subunit C OS=Vibrio
vulnificus (strain CMCP6) GN=nqrC PE=3 SV=1
Length = 255
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 9 AFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGK-----HQDALKTVLKNA 63
AF ++ D EQGE P LG V+ + K H+ A+K V A
Sbjct: 149 AFVAVETDGNTVSGITYYEQGETPGLGGEVENPSWRAQFVGKKLFDENHKPAIKVVKGGA 208
Query: 64 PLGSKNQHVKDSALNLTL 81
P+GS +H D TL
Sbjct: 209 PVGS--EHGVDGLSGATL 224
>sp|P27727|DPOLA_TRYBB DNA polymerase alpha catalytic subunit OS=Trypanosoma brucei brucei
PE=3 SV=1
Length = 1339
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 3 KNTSSSAFRKIDVD--QYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKT-- 58
+N S+ ++DVD ++ +D+ + E GE P + A +E+LS L G+ D KT
Sbjct: 107 RNISAEEEDEVDVDITKFLQDDGVDSEDGEGPSVTA----TELLSSLISGRSADTNKTEE 162
Query: 59 VLKNAPLGSKNQHV 72
+ + PL + N V
Sbjct: 163 LADSFPLANLNDEV 176
>sp|Q56582|NQRC_VIBAL Na(+)-translocating NADH-quinone reductase subunit C OS=Vibrio
alginolyticus GN=nqrC PE=1 SV=3
Length = 256
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 9 AFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESE-----ILSLLNQGKHQDALKTVLKNA 63
AF ++ D EQGE P LG V+ I L HQ A+K V A
Sbjct: 150 AFVAVETDGNTVSAITYYEQGETPGLGGEVENPSWRDQFIGKKLYNEDHQPAIKVVKGGA 209
Query: 64 PLGSKNQHVKDSALNLTL 81
P GS +H D TL
Sbjct: 210 PQGS--EHGVDGLSGATL 225
>sp|Q04652|KELC_DROME Ring canal kelch protein OS=Drosophila melanogaster GN=kel PE=1
SV=4
Length = 1477
Score = 29.3 bits (64), Expect = 9.0, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 112 YKGFEIPSEKSSSHLLTWHEKVFAIGGLGSIVRVLT 147
Y+ E+P+ + S L +KV+A+GG +RV T
Sbjct: 430 YQAAEMPNRRCRSGLSVLGDKVYAVGGFNGSLRVRT 465
>sp|A1ATU4|ASSY_PELPD Argininosuccinate synthase OS=Pelobacter propionicus (strain DSM
2379) GN=argG PE=3 SV=1
Length = 408
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 35 GAGVDESEILSLLNQ--GKHQDALKTVLKNAPLGSKNQHVKDSALNLTLK-VLLAIKSSQ 91
G + +++L+ LN G+H +L+N +G K++ V ++ L+ +A++
Sbjct: 238 GEKMTPAQLLAHLNYLGGQHGIGRVDLLENRSVGMKSRGVYETPGGTILREAHMAVEQIT 297
Query: 92 MDETVSNLDQDLLDTLMKYIYKGFEIPSEK 121
MD V + L+ + +Y G+ E+
Sbjct: 298 MDREVMRIRDGLIPEYARLVYAGYWFSPER 327
>sp|B9M374|ASSY_GEOSF Argininosuccinate synthase OS=Geobacter sp. (strain FRC-32) GN=argG
PE=3 SV=1
Length = 406
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 35 GAGVDESEILSLLN--QGKHQDALKTVLKNAPLGSKNQHVKDSALNLTLK-VLLAIKSSQ 91
G + +++L+ LN G+H +L+N +G K++ V ++ L+ +A++
Sbjct: 236 GEKMSPAQLLAHLNFIGGEHGIGRVDLLENRSVGMKSRGVYETPGGTILREAHMAVEQIT 295
Query: 92 MDETVSNLDQDLLDTLMKYIYKGFEIPSEK 121
MD V +L L+ + +Y G+ E+
Sbjct: 296 MDREVMHLRDSLVPRYAEMVYNGYWFSPER 325
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,943,980
Number of Sequences: 539616
Number of extensions: 2083792
Number of successful extensions: 5338
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 5299
Number of HSP's gapped (non-prelim): 112
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)