Query psy2476
Match_columns 151
No_of_seqs 112 out of 184
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 17:15:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k8k_G P16, ARP2/3 complex 16 100.0 2.4E-72 8.1E-77 438.4 10.8 149 1-151 1-150 (151)
2 3dwl_G Actin-related protein 2 100.0 1.3E-66 4.4E-71 406.4 8.9 143 8-150 1-150 (152)
3 3vu7_H DNA repair protein REV1 67.5 9.8 0.00034 28.0 5.2 21 98-118 73-93 (124)
4 2vxg_A LD41624, GE-1, CG6181-P 64.4 4 0.00014 30.6 2.5 23 40-62 4-26 (139)
5 1cno_A Cytochrome C552; electr 63.1 16 0.00054 23.3 5.1 23 91-113 59-81 (87)
6 4fjo_A DNA repair protein REV1 60.2 12 0.0004 26.1 4.2 21 98-118 46-66 (97)
7 1c53_A Cytochrome C553; electr 55.8 13 0.00043 23.4 3.5 22 91-112 56-77 (79)
8 1x3u_A Transcriptional regulat 51.1 20 0.00067 22.4 3.9 49 91-140 9-62 (79)
9 3hug_A RNA polymerase sigma fa 50.0 12 0.00043 24.5 2.9 29 90-118 29-57 (92)
10 2zzs_A Cytochrome C554; C-type 44.8 45 0.0015 21.6 5.1 22 91-112 79-100 (103)
11 3lhl_A Putative agmatinase; pr 43.5 6.4 0.00022 32.1 0.7 72 10-87 198-274 (287)
12 2qk1_A Protein STU2; STU2P, XM 40.4 99 0.0034 23.8 7.2 58 50-112 190-247 (249)
13 3vrd_A FCCA subunit, flavocyto 40.3 22 0.00075 26.2 3.2 22 91-112 150-171 (174)
14 3dmi_A Cytochrome C6; electron 39.0 21 0.00071 22.3 2.5 24 91-114 59-82 (88)
15 2rnj_A Response regulator prot 37.6 37 0.0012 22.1 3.7 49 91-140 22-75 (91)
16 3mzk_B Protein transport prote 37.2 22 0.00075 31.1 3.1 27 40-66 154-180 (441)
17 3c57_A Two component transcrip 36.1 30 0.001 23.0 3.1 53 88-141 17-74 (95)
18 1h1o_A Cytochrome C-552; elect 35.3 32 0.0011 24.6 3.4 32 81-112 145-181 (183)
19 1e1h_A BONT/A LC, botulinum ne 35.1 36 0.0012 28.6 3.9 35 61-96 110-144 (287)
20 2zxy_A Cytochrome C552, cytoch 34.7 28 0.00094 21.5 2.6 22 91-112 60-84 (87)
21 1txp_A HnRNP C, heterogeneous 32.8 22 0.00074 20.0 1.6 22 78-100 2-23 (28)
22 2qyp_A Proactivator polypeptid 32.4 67 0.0023 21.1 4.4 47 40-86 15-67 (91)
23 2qk2_A LP04448P; mini spindles 31.0 1.1E+02 0.0037 22.7 5.8 58 52-114 177-234 (242)
24 1gq6_A Proclavaminate amidino 30.7 14 0.00049 30.1 0.8 72 10-87 231-305 (313)
25 4g3h_A Arginase (ROCF); rossma 30.0 18 0.00063 30.0 1.4 72 10-88 230-310 (330)
26 2zc2_A DNAD-like replication p 27.7 27 0.00091 22.6 1.6 41 91-132 25-68 (78)
27 3mzy_A RNA polymerase sigma-H 26.8 47 0.0016 22.6 2.9 28 90-118 100-128 (164)
28 3fwc_B Nuclear mRNA export pro 26.7 1.1E+02 0.0036 21.0 4.6 50 66-115 1-52 (85)
29 2o8x_A Probable RNA polymerase 26.3 21 0.00071 21.6 0.8 28 91-118 8-35 (70)
30 1m70_A Cytochrome C4; electron 26.0 61 0.0021 23.2 3.5 22 91-112 166-187 (190)
31 3niq_A 3-guanidinopropionase; 25.8 21 0.00071 29.6 1.0 74 9-88 235-311 (326)
32 4ffb_C Protein STU2; tubulin f 25.4 1.9E+02 0.0065 22.0 6.5 38 105-142 138-175 (278)
33 3nio_A Guanidinobutyrase; PA14 25.0 22 0.00074 29.3 0.9 72 10-87 239-313 (319)
34 1w2l_A Cytochrome oxidase subu 23.9 46 0.0016 21.1 2.2 22 91-112 75-96 (99)
35 2knz_A Ubiquilin-4; cytoplasm, 23.9 97 0.0033 18.9 3.7 29 36-64 21-52 (53)
36 3dr0_A Cytochrome C6; photosyn 23.0 29 0.00099 21.6 1.1 25 90-114 63-87 (93)
37 2dzl_A Protein FAM100B; UBA-li 23.0 91 0.0031 20.1 3.5 32 36-67 28-61 (66)
38 1sd4_A Penicillinase repressor 22.9 1.7E+02 0.0057 19.4 5.1 18 97-114 106-123 (126)
39 1tty_A Sigma-A, RNA polymerase 22.6 45 0.0015 21.6 2.0 29 90-118 10-42 (87)
40 2pm7_A Protein WEB1, protein t 22.6 1.1E+02 0.0038 26.1 4.9 62 40-101 147-226 (399)
41 3l2p_A DNA ligase 3; DNA ligas 22.3 69 0.0023 28.7 3.7 89 38-131 82-181 (579)
42 1ify_A HHR23A, UV excision rep 22.1 96 0.0033 18.6 3.3 28 37-64 19-48 (49)
43 3ph2_B Cytochrome C6; photosyn 21.5 29 0.00098 21.4 0.8 23 91-113 58-80 (86)
44 2a0m_A Arginase superfamily pr 21.4 21 0.00072 29.3 0.2 70 10-87 232-306 (316)
45 3bon_A Neurotoxin A; metallopr 21.4 83 0.0028 27.8 3.9 36 60-96 72-107 (425)
46 1zb7_A Neurotoxin; hexxh metal 21.4 83 0.0028 28.0 3.9 37 59-96 72-108 (455)
47 2qn0_A Neurotoxin; botulism, s 21.1 85 0.0029 27.7 3.9 36 60-96 71-106 (430)
48 1t3c_A Neurotoxin type E; cata 20.9 87 0.003 27.6 3.9 36 60-96 67-102 (421)
49 1z7h_A Tetanus toxin light cha 20.9 85 0.0029 27.8 3.9 35 60-95 76-110 (447)
50 3m1r_A Formimidoylglutamase; s 20.8 31 0.0011 28.4 1.1 72 9-87 240-316 (322)
51 2a97_A BONT/F, botulinum neuro 20.7 88 0.003 27.7 3.9 36 60-96 72-107 (439)
52 2fpq_A Botulinum neurotoxin D 20.3 90 0.0031 27.7 3.9 36 60-96 79-114 (444)
No 1
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=100.00 E-value=2.4e-72 Score=438.41 Aligned_cols=149 Identities=52% Similarity=0.819 Sum_probs=135.2
Q ss_pred CCCccC-CCCCccccccCCCCCCCCccccCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHhcCCCCCCCChHHHHHHHHH
Q psy2476 1 MAKNTS-SSAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVLKNAPLGSKNQHVKDSALNL 79 (151)
Q Consensus 1 msknt~-~~~~RkIDVD~~d~d~f~~~~~~~~~~~~~~~~~~qvr~ll~~gd~~~ALk~aL~npP~g~~~~~~K~~~~~~ 79 (151)
|||||+ |++|||||||+||||+|.++++.++. ..+|+++|||+||++||+++||++||+||||++|+|++|++|+++
T Consensus 1 M~knt~~~~~fR~iDVD~~d~d~f~~~~~~~~~--~~~p~~~qv~~lL~~g~~~~ALk~~L~~pP~~~k~q~~K~~~~~~ 78 (151)
T 1k8k_G 1 MSKNTVSSARFRKVDVDEYDENKFVDEDDGGDG--QAGPDEGEVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSI 78 (151)
T ss_dssp --------CGGGTSCGGGGCTTSCCCCCCC------CCCCHHHHHHHHHTTCHHHHHHHHTSSCCSSCSCHHHHHHHHHH
T ss_pred CCCcccccccCeecccccCCcccCChhhccCCC--CCCCCHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcHHHHHHHHHH
Confidence 999999 99999999999999999999877533 357899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccHHHHHhccChhhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHhhCCCceEEEeccCCC
Q psy2476 80 TLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKSSSHLLTWHEKVFAIGGLGSIVRVLTDSKR 151 (151)
Q Consensus 80 Vl~vL~s~K~sdI~~~v~~L~~e~~D~LMKYiYkgm~~~~~~~~~~LL~WheKl~~~~G~G~IvRvltdRkt 151 (151)
|++||++||++||+++|++|++|++|+|||||||||+.|++++|++||+||||+++++|+||||||||||||
T Consensus 79 Vl~VL~siK~sdI~~~v~~L~~e~~D~LMKYiYkGm~~~~~~~~~~LL~WHEKl~~~~G~G~IvRvltdRrt 150 (151)
T 1k8k_G 79 VLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDNSSAVLLQWHEKALAAGGVGSIVRVLTARKT 150 (151)
T ss_dssp HHHHHHHSCGGGHHHHHHTSCHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHccHHHHHHHHHHhChhhhhHHHHHHHHhhcCcCCCcchHHHHHHHHHHHhcCCCcEEEEeccCcc
Confidence 999999999999999999999999999999999999999988899999999999999999999999999997
No 2
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-66 Score=406.41 Aligned_cols=143 Identities=31% Similarity=0.512 Sum_probs=108.5
Q ss_pred CCCccccccCCCCCCCCccccCCC---CCCCCCCC----HHHHHHHHhcCCHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q psy2476 8 SAFRKIDVDQYNEDNYKEEEQGEV---PQLGAGVD----ESEILSLLNQGKHQDALKTVLKNAPLGSKNQHVKDSALNLT 80 (151)
Q Consensus 8 ~~~RkIDVD~~d~d~f~~~~~~~~---~~~~~~~~----~~qvr~ll~~gd~~~ALk~aL~npP~g~~~~~~K~~~~~~V 80 (151)
++|||||||+||||+|.++++.++ ..++++++ ++|||+||++||+++||++||+||||++|++++|++|+++|
T Consensus 1 ~~~R~iDID~~d~d~~~~e~l~~~~~~~~~e~~~~~~~~~~qvr~lL~~g~~~~ALk~aL~~pP~~~~~~~~K~~~~~~V 80 (152)
T 3dwl_G 1 MTFRTLDVDSITEPVLTEQDIFPIRNETAEQVQAAVSQLIPQARSAIQTGNALQGLKTLLSYVPYGNDVQEVRTQYLNAF 80 (152)
T ss_dssp -------------------------------CCCGGGGTHHHHHHHHHHSCCHHHHHHHTSSCCCSCSCHHHHHHHHHHH
T ss_pred CCCeecccccCCcccCchhhccCCCCCCHHHHHhhhhhhHHHHHHHHHCCCHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 489999999999999999886663 24566777 99999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccHHHHHhccChhhhHHHHHHHHhhcCCCCCcchhhHHHHHHHHHHhhCCCceEEEeccCC
Q psy2476 81 LKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKSSSHLLTWHEKVFAIGGLGSIVRVLTDSK 150 (151)
Q Consensus 81 l~vL~s~K~sdI~~~v~~L~~e~~D~LMKYiYkgm~~~~~~~~~~LL~WheKl~~~~G~G~IvRvltdRk 150 (151)
++||+|||++||+++|++|+++++|+|||||||||+.|++++|++||+||||+++++|+||||||||||.
T Consensus 81 l~vL~siK~sdI~~~v~~L~~~~~D~LMKYiYkGm~~~~~~~~~~LL~WHEKl~e~~G~G~IvRvltDR~ 150 (152)
T 3dwl_G 81 VDVLSNIRAADIPAFVKECSTEEIDNIVNFIYRGLANPQAYNSSVLLNWHEKVVEISGIGCIVRVLNSRP 150 (152)
T ss_dssp HHHHHTSCGGGHHHHHHHSCHHHHHHHHHHHHHHTTC----CCSHHHHHHHHHHHTTCSHHHHHHTTCC-
T ss_pred HHHHHHccHHHHHHHHHHhCHHHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHcCCCceEEEecCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996
No 3
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=67.46 E-value=9.8 Score=27.97 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=16.5
Q ss_pred ccChhhhHHHHHHHHhhcCCC
Q psy2476 98 NLDQDLLDTLMKYIYKGFEIP 118 (151)
Q Consensus 98 ~L~~e~~D~LMKYiYkgm~~~ 118 (151)
.-+-|....||||+|+.+...
T Consensus 73 ek~Lek~~~vlk~l~rlv~~~ 93 (124)
T 3vu7_H 73 EKDLEKLDLVIKYMKRLMQQS 93 (124)
T ss_dssp TTCHHHHHHHHHHHHHHHHSC
T ss_pred cccHHHHHHHHHHHHHHHhcc
Confidence 345667799999999998764
No 4
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=64.36 E-value=4 Score=30.58 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcC
Q psy2476 40 ESEILSLLNQGKHQDALKTVLKN 62 (151)
Q Consensus 40 ~~qvr~ll~~gd~~~ALk~aL~n 62 (151)
..+|.+|++.|++++|...||+.
T Consensus 4 ~~~I~~Ll~~g~~eeAf~~aL~s 26 (139)
T 2vxg_A 4 GDSIKQLLMAGQINKAFHQALLA 26 (139)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHh
Confidence 35799999999999999999973
No 5
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=63.14 E-value=16 Score=23.29 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=20.2
Q ss_pred cHHHHHhccChhhhHHHHHHHHh
Q psy2476 91 QMDETVSNLDQDLLDTLMKYIYK 113 (151)
Q Consensus 91 dI~~~v~~L~~e~~D~LMKYiYk 113 (151)
-|+.+...|+++|+.-|+.||..
T Consensus 59 ~Mp~~~~~ls~~ei~~l~~yl~~ 81 (87)
T 1cno_A 59 VMQGQATALSDADIANLAAYYAS 81 (87)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccHHHHhhCCHHHHHHHHHHHHh
Confidence 58888889999999999999964
No 6
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=60.19 E-value=12 Score=26.12 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=16.2
Q ss_pred ccChhhhHHHHHHHHhhcCCC
Q psy2476 98 NLDQDLLDTLMKYIYKGFEIP 118 (151)
Q Consensus 98 ~L~~e~~D~LMKYiYkgm~~~ 118 (151)
.-+-|....+|||+|+-+...
T Consensus 46 ~~~lek~~~vlk~l~rlv~~~ 66 (97)
T 4fjo_A 46 EKDLEKLDLVIKYMKRLMQQS 66 (97)
T ss_dssp TTCHHHHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHHHhcc
Confidence 345666799999999998653
No 7
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=55.75 E-value=13 Score=23.39 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=19.9
Q ss_pred cHHHHHhccChhhhHHHHHHHH
Q psy2476 91 QMDETVSNLDQDLLDTLMKYIY 112 (151)
Q Consensus 91 dI~~~v~~L~~e~~D~LMKYiY 112 (151)
-|+.+...|+++|+.-|..||.
T Consensus 56 ~Mp~~~~~Ls~~ei~~l~~Yl~ 77 (79)
T 1c53_A 56 VMTNLVKRYSDEEMKAMADYMS 77 (79)
T ss_pred chHHHHhhCCHHHHHHHHHHHH
Confidence 5888888999999999999985
No 8
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=51.14 E-value=20 Score=22.36 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=31.9
Q ss_pred cHHHHHhccChhhhHHHHHHHHhhcCCCC-----CcchhhHHHHHHHHHHhhCCC
Q psy2476 91 QMDETVSNLDQDLLDTLMKYIYKGFEIPS-----EKSSSHLLTWHEKVFAIGGLG 140 (151)
Q Consensus 91 dI~~~v~~L~~e~~D~LMKYiYkgm~~~~-----~~~~~~LL~WheKl~~~~G~G 140 (151)
.+..++..|++.+.++|.-| +.||.... .-+-+..-.+..++.++.+..
T Consensus 9 ~l~~~l~~L~~~e~~vl~l~-~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 9 DIRARLQTLSERERQVLSAV-VAGLPNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HHHHHHHHHCHHHHHHHHHH-TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 56777888888888888775 78876441 113345556666666666554
No 9
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=50.00 E-value=12 Score=24.51 Aligned_cols=29 Identities=10% Similarity=0.352 Sum_probs=24.3
Q ss_pred ccHHHHHhccChhhhHHHHHHHHhhcCCC
Q psy2476 90 SQMDETVSNLDQDLLDTLMKYIYKGFEIP 118 (151)
Q Consensus 90 sdI~~~v~~L~~e~~D~LMKYiYkgm~~~ 118 (151)
..+..++..|++.+..+|.-|.+.||...
T Consensus 29 ~~l~~~l~~L~~~~r~vl~l~~~~g~s~~ 57 (92)
T 3hug_A 29 LLIADALAQLSAEHRAVIQRSYYRGWSTA 57 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHcCCCHH
Confidence 35788889999999999998888998754
No 10
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=44.77 E-value=45 Score=21.59 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.5
Q ss_pred cHHHHHhccChhhhHHHHHHHH
Q psy2476 91 QMDETVSNLDQDLLDTLMKYIY 112 (151)
Q Consensus 91 dI~~~v~~L~~e~~D~LMKYiY 112 (151)
-|+.+-..|+++|++-|..||.
T Consensus 79 ~Mp~~~~~ls~~ei~~l~~yl~ 100 (103)
T 2zzs_A 79 VMQAQASLLSDDDIANLAAYYS 100 (103)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHH
T ss_pred chHHHHhhCCHHHHHHHHHHHH
Confidence 5787778999999999999985
No 11
>3lhl_A Putative agmatinase; protein structure initiative II(PSI II), nysgxrc structural genomics, NEW YORK SGX research center for struc genomics; 2.30A {Clostridium difficile}
Probab=43.53 E-value=6.4 Score=32.07 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=43.3
Q ss_pred CccccccCCCCCCCCccccCCCCCCC-CCCCHHHHHHHHh----cCCHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHH
Q psy2476 10 FRKIDVDQYNEDNYKEEEQGEVPQLG-AGVDESEILSLLN----QGKHQDALKTVLKNAPLGSKNQHVKDSALNLTLKVL 84 (151)
Q Consensus 10 ~RkIDVD~~d~d~f~~~~~~~~~~~~-~~~~~~qvr~ll~----~gd~~~ALk~aL~npP~g~~~~~~K~~~~~~Vl~vL 84 (151)
|=.||||.+||....-- ..|+ -+-...|+..+++ +|...-++-.+=-||+|...+ .+=..+..++.+.|
T Consensus 198 ylSiDiDvlDpa~aPgt-----gtp~pgGlt~~e~~~~l~~l~~~~~~vvg~DivE~~P~~D~~~-~Ta~laa~li~~~l 271 (287)
T 3lhl_A 198 YLTIDLDVLDASVFPGT-----GTPEPGGVNYREFQEIFKIIKNSNINIVGCDIVELSPDYDTTG-VSTVIACKILRELC 271 (287)
T ss_dssp EEEEEGGGBCTTTCCSB-----SSCCSSCBCHHHHTHHHHHHHTSCCEEEEEEEECBCGGGCTTC-HHHHHHHHHHHHHH
T ss_pred EEEEecCcCCHhhCCCC-----CCCCCCCCCHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCCCC-hHHHHHHHHHHHHH
Confidence 44689999998443211 1222 3446667666653 443333344445689998766 55566777888888
Q ss_pred Hhh
Q psy2476 85 LAI 87 (151)
Q Consensus 85 ~s~ 87 (151)
..+
T Consensus 272 ~~~ 274 (287)
T 3lhl_A 272 LII 274 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 12
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=40.45 E-value=99 Score=23.80 Aligned_cols=58 Identities=5% Similarity=0.080 Sum_probs=47.3
Q ss_pred CCHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhhhhccHHHHHhccChhhhHHHHHHHH
Q psy2476 50 GKHQDALKTVLKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIY 112 (151)
Q Consensus 50 gd~~~ALk~aL~npP~g~~~~~~K~~~~~~Vl~vL~s~K~sdI~~~v~~L~~e~~D~LMKYiY 112 (151)
..+...|..+|.++ +..+++.++.++-.+...+-..+|.+.+..|+.-....+..|+=
T Consensus 190 ~~iip~l~~~l~D~-----~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ki~~~~~ 247 (249)
T 2qk1_A 190 DEVVPIVIQIVNDT-----QPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIEETVK 247 (249)
T ss_dssp TTHHHHHHHHHTCS-----SHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45666777777665 56899999999999988888888999999999888777777763
No 13
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*
Probab=40.32 E-value=22 Score=26.15 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=20.0
Q ss_pred cHHHHHhccChhhhHHHHHHHH
Q psy2476 91 QMDETVSNLDQDLLDTLMKYIY 112 (151)
Q Consensus 91 dI~~~v~~L~~e~~D~LMKYiY 112 (151)
-|..+.+.|+++++..|..||.
T Consensus 150 ~M~~~a~~Lsd~eI~alaaY~~ 171 (174)
T 3vrd_A 150 KLKELLKAEGEDGLDALFAFYA 171 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhCCHHHHHHHHHHHH
Confidence 3888899999999999999986
No 14
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=38.95 E-value=21 Score=22.32 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=19.1
Q ss_pred cHHHHHhccChhhhHHHHHHHHhh
Q psy2476 91 QMDETVSNLDQDLLDTLMKYIYKG 114 (151)
Q Consensus 91 dI~~~v~~L~~e~~D~LMKYiYkg 114 (151)
-|+.+...|+++|+.-|..||..-
T Consensus 59 ~Mp~~~~~ls~~ei~~l~~yl~~~ 82 (88)
T 3dmi_A 59 AMPAFGGRLSDEEIANVAAYVLAS 82 (88)
T ss_dssp TBCCCTTTSCHHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHH
Confidence 466666679999999999999753
No 15
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=37.61 E-value=37 Score=22.15 Aligned_cols=49 Identities=12% Similarity=0.126 Sum_probs=28.3
Q ss_pred cHHHHHhccChhhhHHHHHHHHhhcCCCC-----CcchhhHHHHHHHHHHhhCCC
Q psy2476 91 QMDETVSNLDQDLLDTLMKYIYKGFEIPS-----EKSSSHLLTWHEKVFAIGGLG 140 (151)
Q Consensus 91 dI~~~v~~L~~e~~D~LMKYiYkgm~~~~-----~~~~~~LL~WheKl~~~~G~G 140 (151)
.+..++..|++.+..+|.-| +.||.... .-+-+..-.+..++.++.|..
T Consensus 22 ~l~~~l~~Lt~~e~~vl~l~-~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 22 KRAELYEMLTEREMEILLLI-AKGYSNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp ---CTGGGCCSHHHHHHHHH-HTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 45666777888888777664 77776552 113345555566666665554
No 16
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=37.17 E-value=22 Score=31.12 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCC
Q psy2476 40 ESEILSLLNQGKHQDALKTVLKNAPLG 66 (151)
Q Consensus 40 ~~qvr~ll~~gd~~~ALk~aL~npP~g 66 (151)
..+|+++|-.|+.++||..||++-=++
T Consensus 154 ~~~I~~~Ll~G~~e~Av~~al~~~lwa 180 (441)
T 3mzk_B 154 QMRVLAFLQTGNHDEALRLALSKRDYA 180 (441)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCCcHH
Confidence 468999999999999999999987554
No 17
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=36.06 E-value=30 Score=23.01 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=28.3
Q ss_pred hhccHHHHHhccChhhhHHHHHHHHhhcCCCC-----CcchhhHHHHHHHHHHhhCCCc
Q psy2476 88 KSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS-----EKSSSHLLTWHEKVFAIGGLGS 141 (151)
Q Consensus 88 K~sdI~~~v~~L~~e~~D~LMKYiYkgm~~~~-----~~~~~~LL~WheKl~~~~G~G~ 141 (151)
...++..++..|++.|..+|.-| +.|+.... .-+-+..-.+..++.++.|..+
T Consensus 17 ~~~~l~~~l~~Lt~~e~~vl~l~-~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 74 (95)
T 3c57_A 17 RGSHMQDPLSGLTDQERTLLGLL-SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMER 74 (95)
T ss_dssp ----------CCCHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 33567778888998888888776 88877541 1133555566666666666544
No 18
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=35.34 E-value=32 Score=24.61 Aligned_cols=32 Identities=13% Similarity=0.308 Sum_probs=24.4
Q ss_pred HHHHHhhhh-----ccHHHHHhccChhhhHHHHHHHH
Q psy2476 81 LKVLLAIKS-----SQMDETVSNLDQDLLDTLMKYIY 112 (151)
Q Consensus 81 l~vL~s~K~-----sdI~~~v~~L~~e~~D~LMKYiY 112 (151)
.+.|..++. .-|+.+.+.|+++|+.-|..||.
T Consensus 145 ~~~l~~~~~g~~~~~~Mp~~~~~Ls~~ei~~l~~yl~ 181 (183)
T 1h1o_A 145 IQQLTYFHNGTRVNTLMNQIAKNITVAQMKDVAAYLS 181 (183)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcchHHHHHhCCHHHHHHHHHHHH
Confidence 344444443 35888888999999999999985
No 19
>1e1h_A BONT/A LC, botulinum neurotoxin type A light chain; Zn-endopeptidase, complex, substrate bound, inhibitor bound, hydrolase; 1.80A {Clostridium botulinum} SCOP: d.92.1.7
Probab=35.08 E-value=36 Score=28.57 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=28.2
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHHhhhhccHHHHH
Q psy2476 61 KNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETV 96 (151)
Q Consensus 61 ~npP~g~~~~~~K~~~~~~Vl~vL~s~K~sdI~~~v 96 (151)
=||=|-+.| +-||++|+++++.+..|++.++-+.+
T Consensus 110 YDpnYLsTD-~EKD~FLk~~IKLFkRINsn~~G~~L 144 (287)
T 1e1h_A 110 YDSTYLSTD-NEKDNYLKGVTKLFERIYSTDLGRML 144 (287)
T ss_dssp BCTTTTCSH-HHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred eCccccccc-hhHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 356666665 78999999999999999988876543
No 20
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=34.73 E-value=28 Score=21.51 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=18.4
Q ss_pred cHHHH---HhccChhhhHHHHHHHH
Q psy2476 91 QMDET---VSNLDQDLLDTLMKYIY 112 (151)
Q Consensus 91 dI~~~---v~~L~~e~~D~LMKYiY 112 (151)
-|+.+ ...|+++|++-|..||.
T Consensus 60 ~Mp~~~~~~~~ls~~ei~~l~~yl~ 84 (87)
T 2zxy_A 60 IMKPQLTMLKGLSDAELKALADFIL 84 (87)
T ss_dssp HHGGGGGGGGGCCHHHHHHHHHHHH
T ss_pred CCCCccccccCCCHHHHHHHHHHHH
Confidence 46665 67899999999999985
No 21
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=32.77 E-value=22 Score=20.04 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhhccHHHHHhccC
Q psy2476 78 NLTLKVLLAIKSSQMDETVSNLD 100 (151)
Q Consensus 78 ~~Vl~vL~s~K~sdI~~~v~~L~ 100 (151)
+++..-|++||+. |+.++.+|.
T Consensus 2 Q~IkkELtQIK~k-vDsLLe~Le 23 (28)
T 1txp_A 2 QAIKKELTQIKQK-VDSLLENLE 23 (28)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHH
T ss_pred hHHHHHHHHHHHH-HHHHHHHHH
Confidence 5777889999854 888887775
No 22
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A
Probab=32.42 E-value=67 Score=21.08 Aligned_cols=47 Identities=21% Similarity=0.324 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcC-----C-CCCCCChHHHHHHHHHHHHHHHh
Q psy2476 40 ESEILSLLNQGKHQDALKTVLKN-----A-PLGSKNQHVKDSALNLTLKVLLA 86 (151)
Q Consensus 40 ~~qvr~ll~~gd~~~ALk~aL~n-----p-P~g~~~~~~K~~~~~~Vl~vL~s 86 (151)
..++.++|.++..++.+..+|+. | |+...=+.+=+.|...+++.|.+
T Consensus 15 v~~i~~~l~~n~t~~~I~~~l~~~C~~lp~~~~~~C~~~V~~y~~~ii~~l~~ 67 (91)
T 2qyp_A 15 VKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLE 67 (91)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHHHHTSCSSTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHCCCCcccchHHHHHHHHHHHHHHHHH
Confidence 56788888877777777777776 5 46555555557777777777654
No 23
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=31.00 E-value=1.1e+02 Score=22.65 Aligned_cols=58 Identities=12% Similarity=0.165 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhhhhccHHHHHhccChhhhHHHHHHHHhh
Q psy2476 52 HQDALKTVLKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKG 114 (151)
Q Consensus 52 ~~~ALk~aL~npP~g~~~~~~K~~~~~~Vl~vL~s~K~sdI~~~v~~L~~e~~D~LMKYiYkg 114 (151)
+..+|..+|.++ +..+++.+..++-.+...+....+.+.+..|++-..+.+..|+=|.
T Consensus 177 l~p~l~~~l~D~-----~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a 234 (242)
T 2qk2_A 177 LTTSLVKTLNEP-----DPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKA 234 (242)
T ss_dssp HHHHHHHHHTSS-----CHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCC-----ChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 445666667543 4589999999999999999877799999999888788777777654
No 24
>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase, antibioti; 1.75A {Streptomyces clavuligerus} SCOP: c.42.1.1 PDB: 1gq7_A
Probab=30.74 E-value=14 Score=30.08 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=42.2
Q ss_pred CccccccCCCCCCCCccccCCCCCC-CCCCCHHHHHHHHhc--CCHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHh
Q psy2476 10 FRKIDVDQYNEDNYKEEEQGEVPQL-GAGVDESEILSLLNQ--GKHQDALKTVLKNAPLGSKNQHVKDSALNLTLKVLLA 86 (151)
Q Consensus 10 ~RkIDVD~~d~d~f~~~~~~~~~~~-~~~~~~~qvr~ll~~--gd~~~ALk~aL~npP~g~~~~~~K~~~~~~Vl~vL~s 86 (151)
|=.||||.+||....- . ..| .-+-...|+..+++. +...-++-.+=-||+|...+ .+=..+..++.+.|..
T Consensus 231 ylSiDiDvLDpa~aPg--t---gtp~pgGlt~~e~~~~l~~l~~~~vvg~DivE~~P~~D~~~-~Ta~~aa~li~~~l~~ 304 (313)
T 1gq6_A 231 YVSVDIDVVDPAFAPG--T---GTPAPGGLLSREVLALLRCVGDLKPVGFDVMEVSPLYDHGG-ITSILATEIGAELLYQ 304 (313)
T ss_dssp EEEEEGGGBCTTTCCS--B---SSCCSSCBCHHHHHHHGGGGGGSEEEEEEEECBCGGGCSTT-HHHHHHHHHHHHHHHH
T ss_pred EEEEeecCcCcccCCC--C---CCCCCCCCCHHHHHHHHHHHccCCeEEEEEEEECCCcCCCC-hHHHHHHHHHHHHHHH
Confidence 3479999999943211 0 122 235578888888762 11111222233488897665 4555667778887776
Q ss_pred h
Q psy2476 87 I 87 (151)
Q Consensus 87 ~ 87 (151)
+
T Consensus 305 ~ 305 (313)
T 1gq6_A 305 Y 305 (313)
T ss_dssp H
T ss_pred H
Confidence 5
No 25
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI hydrolysis, hydrolase; 2.20A {Helicobacter pylori}
Probab=29.95 E-value=18 Score=30.00 Aligned_cols=72 Identities=17% Similarity=0.247 Sum_probs=42.6
Q ss_pred CccccccCCCCCCCCccccCCCCCCC-CCCCHHHHHHHHh------cCCHHHHHHHHhcCCCCCCC--ChHHHHHHHHHH
Q psy2476 10 FRKIDVDQYNEDNYKEEEQGEVPQLG-AGVDESEILSLLN------QGKHQDALKTVLKNAPLGSK--NQHVKDSALNLT 80 (151)
Q Consensus 10 ~RkIDVD~~d~d~f~~~~~~~~~~~~-~~~~~~qvr~ll~------~gd~~~ALk~aL~npP~g~~--~~~~K~~~~~~V 80 (151)
|=+||||.+||..+.-- ..|+ -+-...|+..+++ +++. -++-.+==||+|..+ + .+=..+..++
T Consensus 230 ylS~DiDvLDpa~aPgt-----gtP~pgGlt~~e~~~il~~l~~~~~~~v-vg~DivEvnP~~D~~~~~-~TA~laa~li 302 (330)
T 4g3h_A 230 YLSLDLDIMDGKLFTST-----GVRENNGLSFDELKQLLGLLLESFKDRL-KAVEVTEYNPTVSIKHNN-EEEKQVLEIL 302 (330)
T ss_dssp EEEEEGGGBCTTTCCSS-----SSCCSSCBCHHHHHHHHHHHHHHTTTTE-EEEEEECCCGGGCCCCSS-HHHHHHHHHH
T ss_pred EEEEecCcCChhhCCCC-----CCCCCCCCCHHHHHHHHHHHHhhCCCCE-EEEEEEEECccccCCccC-HHHHHHHHHH
Confidence 55899999999543211 1222 3456667666554 2332 234444458999876 6 4555666677
Q ss_pred HHHHHhhh
Q psy2476 81 LKVLLAIK 88 (151)
Q Consensus 81 l~vL~s~K 88 (151)
.++|..+.
T Consensus 303 ~~~l~~l~ 310 (330)
T 4g3h_A 303 DLIINSCK 310 (330)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcc
Confidence 77766554
No 26
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=27.69 E-value=27 Score=22.56 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=25.3
Q ss_pred cHHHHHhc--cChhhhHHHHHHHHhhcCCCCC-cchhhHHHHHHH
Q psy2476 91 QMDETVSN--LDQDLLDTLMKYIYKGFEIPSE-KSSSHLLTWHEK 132 (151)
Q Consensus 91 dI~~~v~~--L~~e~~D~LMKYiYkgm~~~~~-~~~~~LL~WheK 132 (151)
.|...+.. ++++-+-.+++|--.- ..++- .=-++|..||++
T Consensus 25 ~i~~w~~~~~~~~elI~~A~~~a~~~-~~~s~~Yi~~Il~~W~~~ 68 (78)
T 2zc2_A 25 DLQKTVSDDKTDPDLVRSALREAVFN-GKTNWNYIQAILRNWRHE 68 (78)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHc
Confidence 45555655 7777777788887431 12211 124899999985
No 27
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=26.76 E-value=47 Score=22.63 Aligned_cols=28 Identities=14% Similarity=0.354 Sum_probs=22.8
Q ss_pred ccHHHHHh-ccChhhhHHHHHHHHhhcCCC
Q psy2476 90 SQMDETVS-NLDQDLLDTLMKYIYKGFEIP 118 (151)
Q Consensus 90 sdI~~~v~-~L~~e~~D~LMKYiYkgm~~~ 118 (151)
..+..++. .|++.+..++. |.+.||...
T Consensus 100 ~~l~~~l~~~L~~~~r~v~~-~~~~g~s~~ 128 (164)
T 3mzy_A 100 EEFKKFSENNFSKFEKEVLT-YLIRGYSYR 128 (164)
T ss_dssp HHHHHHHHHHSCHHHHHHHH-HHTTTCCHH
T ss_pred HHHHHHHHhhCCHHHHHHHH-HHHcCCCHH
Confidence 35777888 99999999999 778888654
No 28
>3fwc_B Nuclear mRNA export protein SAC3; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=26.65 E-value=1.1e+02 Score=21.02 Aligned_cols=50 Identities=26% Similarity=0.387 Sum_probs=30.2
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhhccHHHHHhccC--hhhhHHHHHHHHhhc
Q psy2476 66 GSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLD--QDLLDTLMKYIYKGF 115 (151)
Q Consensus 66 g~~~~~~K~~~~~~Vl~vL~s~K~sdI~~~v~~L~--~e~~D~LMKYiYkgm 115 (151)
|+.|++++..+-+++-+|..+=-.+-|+++++.-. ...++.|-.=||..|
T Consensus 1 ~~~~~a~~qi~~~ii~~vV~~el~~~l~~~l~~~~~R~~iI~sLs~eLy~AF 52 (85)
T 3fwc_B 1 GSKQVITEQIANDLVKEVVNSSVISIVKREFSEANYRKDFIDTMTRELYDAF 52 (85)
T ss_dssp -CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 56777888888887777776554444555544222 233566666677664
No 29
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=26.35 E-value=21 Score=21.56 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=22.0
Q ss_pred cHHHHHhccChhhhHHHHHHHHhhcCCC
Q psy2476 91 QMDETVSNLDQDLLDTLMKYIYKGFEIP 118 (151)
Q Consensus 91 dI~~~v~~L~~e~~D~LMKYiYkgm~~~ 118 (151)
++..++..|++.+..+|.-+.+.|+...
T Consensus 8 ~l~~~l~~L~~~~r~il~l~~~~g~s~~ 35 (70)
T 2o8x_A 8 EVTTMIADLTTDQREALLLTQLLGLSYA 35 (70)
T ss_dssp HHHTTTTSSCHHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCHH
Confidence 5677889999999999877667787644
No 30
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=25.98 E-value=61 Score=23.22 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.8
Q ss_pred cHHHHHhccChhhhHHHHHHHH
Q psy2476 91 QMDETVSNLDQDLLDTLMKYIY 112 (151)
Q Consensus 91 dI~~~v~~L~~e~~D~LMKYiY 112 (151)
-|+.+...|+++|+.-|..||.
T Consensus 166 ~Mp~~~~~Ls~~ei~~l~~Yl~ 187 (190)
T 1m70_A 166 IMRGVAAKLSNKDIEALSSYIQ 187 (190)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHH
T ss_pred cHHHHHHhCCHHHHHHHHHHHH
Confidence 5888888999999999999985
No 31
>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas aeruginosa} PDB: 3nip_A
Probab=25.75 E-value=21 Score=29.59 Aligned_cols=74 Identities=12% Similarity=0.122 Sum_probs=44.8
Q ss_pred CCccccccCCCCCCCCccccCCCCCC-CCCCCHHHHHHHHhc--CCHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHH
Q psy2476 9 AFRKIDVDQYNEDNYKEEEQGEVPQL-GAGVDESEILSLLNQ--GKHQDALKTVLKNAPLGSKNQHVKDSALNLTLKVLL 85 (151)
Q Consensus 9 ~~RkIDVD~~d~d~f~~~~~~~~~~~-~~~~~~~qvr~ll~~--gd~~~ALk~aL~npP~g~~~~~~K~~~~~~Vl~vL~ 85 (151)
-|=.||||.+||....-- ..| .-+-...|+..+++. +...-++-.+=-||+|...+ .+-..+..++.+.|.
T Consensus 235 vylSiDiDvLDpa~aPgt-----gtp~pgGlt~~e~~~~l~~l~~~~vvg~DivEv~P~~D~~~-~Ta~laA~li~~~l~ 308 (326)
T 3niq_A 235 TYVSFDVDVLDPAFAPGT-----GTPEIGGMTSLQAQQLVRGLRGLDLVGADVVEVSPPFDVGG-ATALVGATMMFELLC 308 (326)
T ss_dssp EEEEEEGGGBCTTTCCCC-----SSCCSSCBCHHHHHHHHHTTTTSCEEEEEEECCCGGGCSTT-HHHHHHHHHHHHHHH
T ss_pred EEEEEeccccCHhhCCCC-----CCCCCCCCCHHHHHHHHHHHcCCCEEEEEEEEECCCcCCCC-cHHHHHHHHHHHHHH
Confidence 355799999999432211 122 245577888888774 11111223333588898765 566677778888887
Q ss_pred hhh
Q psy2476 86 AIK 88 (151)
Q Consensus 86 s~K 88 (151)
.+-
T Consensus 309 ~~~ 311 (326)
T 3niq_A 309 LLA 311 (326)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 32
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=25.43 E-value=1.9e+02 Score=21.99 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=28.7
Q ss_pred HHHHHHHHhhcCCCCCcchhhHHHHHHHHHHhhCCCce
Q psy2476 105 DTLMKYIYKGFEIPSEKSSSHLLTWHEKVFAIGGLGSI 142 (151)
Q Consensus 105 D~LMKYiYkgm~~~~~~~~~~LL~WheKl~~~~G~G~I 142 (151)
+.++.+|..|+.....+.-.-.+.|...+++.+|...+
T Consensus 138 ~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~ 175 (278)
T 4ffb_C 138 TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNV 175 (278)
T ss_dssp HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcC
Confidence 56678888888766544456788999999999987653
No 33
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A {Pseudomonas aeruginosa} SCOP: c.42.1.0
Probab=24.99 E-value=22 Score=29.29 Aligned_cols=72 Identities=11% Similarity=0.132 Sum_probs=43.1
Q ss_pred CccccccCCCCCCCCccccCCCCCCC-CCCCHHHHHHHHhcC--CHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHh
Q psy2476 10 FRKIDVDQYNEDNYKEEEQGEVPQLG-AGVDESEILSLLNQG--KHQDALKTVLKNAPLGSKNQHVKDSALNLTLKVLLA 86 (151)
Q Consensus 10 ~RkIDVD~~d~d~f~~~~~~~~~~~~-~~~~~~qvr~ll~~g--d~~~ALk~aL~npP~g~~~~~~K~~~~~~Vl~vL~s 86 (151)
|=.||||.+||....-- ..|+ -+-...|+..+++.= ...-++-.+=-||+|...+ .+=..+..++.+.|..
T Consensus 239 ylSiDiDvLDpa~aPgt-----gtp~pgGlt~~e~~~~l~~l~~~~vvg~DivEv~P~~D~~~-~Ta~laa~li~~~l~~ 312 (319)
T 3nio_A 239 YLSFDIDGIDPAWAPGT-----GTPEIGGLTTIQAMEIIRGCQGLDLIGCDLVEVSPPYDTTG-NTSLLGANLLYEMLCV 312 (319)
T ss_dssp EEEEEGGGBCTTTCCCB-----SSCCSSCBCHHHHHHHHHTTTTSEEEEEEEECBCGGGCSSS-HHHHHHHHHHHHHHHT
T ss_pred EEEEecCccChhhCCCC-----CCCCCCCCCHHHHHHHHHHhccCCeeEEEEEEECCCCCCCC-cHHHHHHHHHHHHHHH
Confidence 45799999999543211 1222 345778888887631 1111222333378898766 5556677788888876
Q ss_pred h
Q psy2476 87 I 87 (151)
Q Consensus 87 ~ 87 (151)
+
T Consensus 313 ~ 313 (319)
T 3nio_A 313 L 313 (319)
T ss_dssp S
T ss_pred H
Confidence 5
No 34
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=23.91 E-value=46 Score=21.11 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=18.3
Q ss_pred cHHHHHhccChhhhHHHHHHHH
Q psy2476 91 QMDETVSNLDQDLLDTLMKYIY 112 (151)
Q Consensus 91 dI~~~v~~L~~e~~D~LMKYiY 112 (151)
-|+.+-..|+++|+.-|..||.
T Consensus 75 ~Mp~~~~~ls~~ei~~l~~yl~ 96 (99)
T 1w2l_A 75 VMPASYASLSEREVAALIEFIK 96 (99)
T ss_dssp CCCGGGGGCCHHHHHHHHHHHH
T ss_pred cCccccccCCHHHHHHHHHHHH
Confidence 4666667899999999999985
No 35
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=23.87 E-value=97 Score=18.88 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=19.8
Q ss_pred CCC-CHHHHHHHHh--cCCHHHHHHHHhcCCC
Q psy2476 36 AGV-DESEILSLLN--QGKHQDALKTVLKNAP 64 (151)
Q Consensus 36 ~~~-~~~qvr~ll~--~gd~~~ALk~aL~npP 64 (151)
-|- +..+++..|+ .||.+.|+...+.++|
T Consensus 21 MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~~ 52 (53)
T 2knz_A 21 MGFINREANLQALIATGGDINAAIERLLGSQL 52 (53)
T ss_dssp TTCCCHHHHHHHHHHHTSCHHHHHHHHHHCCC
T ss_pred cCCCCHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 344 5666666664 5788888888887764
No 36
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=23.02 E-value=29 Score=21.62 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=20.0
Q ss_pred ccHHHHHhccChhhhHHHHHHHHhh
Q psy2476 90 SQMDETVSNLDQDLLDTLMKYIYKG 114 (151)
Q Consensus 90 sdI~~~v~~L~~e~~D~LMKYiYkg 114 (151)
..|+.+...|+++|++-|..||..-
T Consensus 63 ~~Mp~~~~~ls~~ei~~l~~yl~~l 87 (93)
T 3dr0_A 63 GAMPAFGGRLSDADIANVAAYIADQ 87 (93)
T ss_dssp TTBCCCBTTBCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3567666789999999999999754
No 37
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.99 E-value=91 Score=20.08 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHhc--CCHHHHHHHHhcCCCCCC
Q psy2476 36 AGVDESEILSLLNQ--GKHQDALKTVLKNAPLGS 67 (151)
Q Consensus 36 ~~~~~~qvr~ll~~--gd~~~ALk~aL~npP~g~ 67 (151)
++....+.+++|.. +|++.||....++|+.-.
T Consensus 28 Tg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~~~~ 61 (66)
T 2dzl_A 28 AGCAADQAKQLLQAAHWQFETALSTFFQETNIPN 61 (66)
T ss_dssp HCCCHHHHHHHHHTTTTCHHHHHHHHHTCSCCCC
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence 56788889999964 699999999999987643
No 38
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=22.94 E-value=1.7e+02 Score=19.40 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=15.2
Q ss_pred hccChhhhHHHHHHHHhh
Q psy2476 97 SNLDQDLLDTLMKYIYKG 114 (151)
Q Consensus 97 ~~L~~e~~D~LMKYiYkg 114 (151)
..|++++++.|.++|-+-
T Consensus 106 ~~ls~ee~~~l~~~L~~~ 123 (126)
T 1sd4_A 106 EELNNKEIEELRDILNDI 123 (126)
T ss_dssp TCSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 589999999999988653
No 39
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=22.59 E-value=45 Score=21.60 Aligned_cols=29 Identities=10% Similarity=0.036 Sum_probs=22.4
Q ss_pred ccHHHHHhccChhhhHHHHHHHH----hhcCCC
Q psy2476 90 SQMDETVSNLDQDLLDTLMKYIY----KGFEIP 118 (151)
Q Consensus 90 sdI~~~v~~L~~e~~D~LMKYiY----kgm~~~ 118 (151)
..|..++..|++.+..+|.-+.+ .||...
T Consensus 10 ~~l~~~l~~L~~~er~vl~l~~~l~~~~~~s~~ 42 (87)
T 1tty_A 10 EELEKVLKTLSPREAMVLRMRYGLLDGKPKTLE 42 (87)
T ss_dssp SHHHHHHTTSCHHHHHHHHHHHTTTTSSCCCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHccCCCCCCCHH
Confidence 46888999999999998866655 676644
No 40
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=22.59 E-value=1.1e+02 Score=26.09 Aligned_cols=62 Identities=27% Similarity=0.406 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC---------CCCC---hHHHHHHHH------HHHHHHHhhhhccHHHHHhccCh
Q psy2476 40 ESEILSLLNQGKHQDALKTVLKNAPL---------GSKN---QHVKDSALN------LTLKVLLAIKSSQMDETVSNLDQ 101 (151)
Q Consensus 40 ~~qvr~ll~~gd~~~ALk~aL~npP~---------g~~~---~~~K~~~~~------~Vl~vL~s~K~sdI~~~v~~L~~ 101 (151)
+..|+++|=.||+++|+..||++-=+ |..+ +.++..|+. -.+++|.+|=..+...+|...+.
T Consensus 147 d~~I~~aLl~Gd~e~AV~~cl~~~r~adAllLA~~gg~el~~~~vq~~Y~~k~~~~~~~~rll~~iv~~n~~d~V~~~~l 226 (399)
T 2pm7_A 147 EQTISKNLVSGNIKSAVKNSLENDLMMEAMVIALDSNNERLKESVKNAYFAKYGSKSSLSRILYSISKREVDDLVENLDV 226 (399)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHTTCCHHHHHHBCG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHhcCHHHHHHHHHHHHHHhcccCchHHHHHHHHHccCHHHHHhcCCh
Confidence 67788888889999988888876533 3332 233344542 46788888888888888887664
No 41
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=22.30 E-value=69 Score=28.74 Aligned_cols=89 Identities=13% Similarity=0.249 Sum_probs=51.3
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHhcCC---CCCCCChHHHHHHHHHHHHHHHhhhh--------ccHHHHHhccChhhhHH
Q psy2476 38 VDESEILSLLNQGKHQDALKTVLKNA---PLGSKNQHVKDSALNLTLKVLLAIKS--------SQMDETVSNLDQDLLDT 106 (151)
Q Consensus 38 ~~~~qvr~ll~~gd~~~ALk~aL~np---P~g~~~~~~K~~~~~~Vl~vL~s~K~--------sdI~~~v~~L~~e~~D~ 106 (151)
-...++..++..||+.++.+..+... |.... ......-|.+.|..+-+ .-+..++...++.|+-.
T Consensus 82 ~~~~~~~~~~~~GD~~~~~~~~~~~~~~~~~~~~----~~LTv~~V~~~L~~ia~~~g~~sq~~~l~~l~~~~~~~E~k~ 157 (579)
T 3l2p_A 82 CNPDDMARDLEQGDVSETIRVFFEQSKSFPPAAK----SLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKC 157 (579)
T ss_dssp SCHHHHHHHGGGSCHHHHHHHHHHSCSSSCCCSS----CCCBHHHHHHHHHHHHTCCSHHHHHHHHHHHHTTCCSHHHHH
T ss_pred cCHHHHHHHHHcCCHHHHHHHHHhcccCCCCCCC----CCccHHHHHHHHHHHHhccCcHHHHHHHHHHHHhCCHHHHHH
Confidence 35778888899999999888876642 22111 12233344444443332 13555666667888776
Q ss_pred HHHHHHhhcCCCCCcchhhHHHHHH
Q psy2476 107 LMKYIYKGFEIPSEKSSSHLLTWHE 131 (151)
Q Consensus 107 LMKYiYkgm~~~~~~~~~~LL~Whe 131 (151)
|+.-|-+-|-..- +...+|-.||.
T Consensus 158 l~R~i~~~lriG~-~e~~vl~a~~~ 181 (579)
T 3l2p_A 158 IIRLIKHDLKMNS-GAKHVLDALDP 181 (579)
T ss_dssp HHHHHTTCCSSSC-CHHHHHHTTCT
T ss_pred HHHHHHhhhhccc-chhHHHHHhCH
Confidence 6666655555431 12356666763
No 42
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.08 E-value=96 Score=18.59 Aligned_cols=28 Identities=18% Similarity=0.408 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHh--cCCHHHHHHHHhcCCC
Q psy2476 37 GVDESEILSLLN--QGKHQDALKTVLKNAP 64 (151)
Q Consensus 37 ~~~~~qvr~ll~--~gd~~~ALk~aL~npP 64 (151)
|-...+++..|+ .||.+.|+...+...|
T Consensus 19 GF~~~~a~~AL~~~~~n~e~A~e~L~~gip 48 (49)
T 1ify_A 19 GYERERVVAALRASYNNPHRAVEYLLTGIP 48 (49)
T ss_dssp TCCHHHHHHHHHTTTSCSHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 445666777665 4577777777777655
No 43
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=21.48 E-value=29 Score=21.44 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=19.3
Q ss_pred cHHHHHhccChhhhHHHHHHHHh
Q psy2476 91 QMDETVSNLDQDLLDTLMKYIYK 113 (151)
Q Consensus 91 dI~~~v~~L~~e~~D~LMKYiYk 113 (151)
-|+.+...|+++|+.-|..||..
T Consensus 58 ~Mp~~~~~ls~~ei~~l~~yl~~ 80 (86)
T 3ph2_B 58 GMPAFKGRLTDDQIAAVAAYVLD 80 (86)
T ss_dssp TBCCCTTTSCHHHHHHHHHHHHH
T ss_pred CCCCcccCCCHHHHHHHHHHHHH
Confidence 57776678999999999999975
No 44
>2a0m_A Arginase superfamily protein; structural genomics, PSI, protein structure initia structural genomics of pathogenic protozoa consortium; 1.60A {Trypanosoma cruzi} SCOP: c.42.1.1
Probab=21.37 E-value=21 Score=29.28 Aligned_cols=70 Identities=13% Similarity=0.138 Sum_probs=39.2
Q ss_pred CccccccCCCCCCCCccccCCCCCCC-CCCCHHHHHHHHh----cCCHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHH
Q psy2476 10 FRKIDVDQYNEDNYKEEEQGEVPQLG-AGVDESEILSLLN----QGKHQDALKTVLKNAPLGSKNQHVKDSALNLTLKVL 84 (151)
Q Consensus 10 ~RkIDVD~~d~d~f~~~~~~~~~~~~-~~~~~~qvr~ll~----~gd~~~ALk~aL~npP~g~~~~~~K~~~~~~Vl~vL 84 (151)
|=.||||.+||....-- ..|+ -+-...|+..+++ +++.. ++-.+=-||+|... .+=..+..++.+.|
T Consensus 232 ylS~DiDvLDpa~aPgt-----gtp~pGGlt~~e~~~il~~l~~~~~vv-g~DivEv~P~~D~~--~Ta~laa~li~~~l 303 (316)
T 2a0m_A 232 FFSFDVDSLKSSDMPGV-----SCPAAVGLSAQEAFDMCFLAGKTPTVM-MMDMSELNPLVEEY--RSPRVAVYMFYHFV 303 (316)
T ss_dssp EEEEEGGGBBTTTCCCB-----SSCBSSCBCHHHHHHHHHHHHHCTTEE-EEEEECBCTTTCCS--HHHHHHHHHHHHHH
T ss_pred EEEEccccCccccCCCC-----CCCCCCCCCHHHHHHHHHHHHcCCCEE-EEEEEEECCCCCcc--HHHHHHHHHHHHHH
Confidence 66799999999542211 1222 3446666666553 33322 22333358888664 44455666777777
Q ss_pred Hhh
Q psy2476 85 LAI 87 (151)
Q Consensus 85 ~s~ 87 (151)
..+
T Consensus 304 ~~~ 306 (316)
T 2a0m_A 304 LGF 306 (316)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 45
>3bon_A Neurotoxin A; metalloprotease; 1.20A {Clostridium botulinum} SCOP: d.92.1.7 PDB: 3bok_A 3boo_A 2ilp_A* 2ima_A* 2imb_A* 2imc_A 2w2d_A 3c8b_A 3bwi_A 3c88_A 3c89_A 3c8a_A 3qiz_A* 3qix_A* 3qiy_A* 3qj0_A* 3dda_A 3ddb_A 3qw5_A* 3qw6_A ...
Probab=21.37 E-value=83 Score=27.75 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=29.2
Q ss_pred hcCCCCCCCChHHHHHHHHHHHHHHHhhhhccHHHHH
Q psy2476 60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETV 96 (151)
Q Consensus 60 L~npP~g~~~~~~K~~~~~~Vl~vL~s~K~sdI~~~v 96 (151)
-=||=|=+-| +-||+.|++|++.+..|.+.++-+.+
T Consensus 72 yYDpnYLsTD-~EKD~FLk~iIKLFkRINsn~~G~~L 107 (425)
T 3bon_A 72 YYDSTYLSTD-NEKDNYLKGVTKLFERIYSTDLGRML 107 (425)
T ss_dssp CCCTTTTCSH-HHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred eeCccccccc-hhHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3466676766 88999999999999999988876553
No 46
>1zb7_A Neurotoxin; hexxh metalloprotease; HET: FLC; 2.35A {Clostridium botulinum}
Probab=21.37 E-value=83 Score=27.95 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=30.6
Q ss_pred HhcCCCCCCCChHHHHHHHHHHHHHHHhhhhccHHHHH
Q psy2476 59 VLKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETV 96 (151)
Q Consensus 59 aL~npP~g~~~~~~K~~~~~~Vl~vL~s~K~sdI~~~v 96 (151)
.-=||=|=+-| +-||++|++|++.+..|.+.++-+.+
T Consensus 72 ~yYDpnYLsTD-~EKD~fLk~~IKLF~RINsn~~G~~L 108 (455)
T 1zb7_A 72 EYYDPTYLKTD-AEKDKFLKTMIKLFNRINSKPSGQRL 108 (455)
T ss_dssp EEBCTTTTCSH-HHHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred ceeCccccccc-hhHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 45578887776 88999999999999999988776543
No 47
>2qn0_A Neurotoxin; botulism, snares, protease; 1.75A {Clostridium botulinum} PDB: 3deb_A
Probab=21.13 E-value=85 Score=27.70 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=29.4
Q ss_pred hcCCCCCCCChHHHHHHHHHHHHHHHhhhhccHHHHH
Q psy2476 60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETV 96 (151)
Q Consensus 60 L~npP~g~~~~~~K~~~~~~Vl~vL~s~K~sdI~~~v 96 (151)
-=||=|=+-| +-||.+|++|++.|..|++.++-+.+
T Consensus 71 yYDpnYLsTD-~EKD~fLk~iIKLf~RInsn~~G~~L 106 (430)
T 2qn0_A 71 YYDPNYLSTD-SDKDTFLKEIIKLFKRINSREIGEEL 106 (430)
T ss_dssp BCCTTTTCSH-HHHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred eeCccccccc-chhhHHHHHHHHHHHHhcCchHHHHH
Confidence 4467777766 88999999999999999998876553
No 48
>1t3c_A Neurotoxin type E; catalytic domain, E212Q mutant, light chain, hydrolase; 1.90A {Clostridium botulinum} SCOP: d.92.1.7 PDB: 3d3x_A 1t3a_A 1zl5_A 1zl6_A 1zn3_A 1zkw_A 1zkx_A
Probab=20.94 E-value=87 Score=27.60 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=29.5
Q ss_pred hcCCCCCCCChHHHHHHHHHHHHHHHhhhhccHHHHH
Q psy2476 60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETV 96 (151)
Q Consensus 60 L~npP~g~~~~~~K~~~~~~Vl~vL~s~K~sdI~~~v 96 (151)
-=||=|=+-| .-||++|++|+..+..|.+.++-+.+
T Consensus 67 yYDpnYLsTD-~EKD~fLk~~IKLf~RInsn~~G~~L 102 (421)
T 1t3c_A 67 YYDPNYLQSD-EEKDRFLKIVTKIFNRINNNLSGGIL 102 (421)
T ss_dssp CBCTTTTCSH-HHHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred eeCccccccc-hhHHHHHHHHHHHHHHhcCchHHHHH
Confidence 4567777766 88999999999999999988776543
No 49
>1z7h_A Tetanus toxin light chain; TENT, metalloprotease, snare, neurotransmission, hydrolase; 2.30A {Clostridium tetani} PDB: 1yvg_A
Probab=20.92 E-value=85 Score=27.83 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=29.0
Q ss_pred hcCCCCCCCChHHHHHHHHHHHHHHHhhhhccHHHH
Q psy2476 60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDET 95 (151)
Q Consensus 60 L~npP~g~~~~~~K~~~~~~Vl~vL~s~K~sdI~~~ 95 (151)
-=||=|=+.| +-||++|++|++.+..|.+.++-+.
T Consensus 76 yYDpnYLsTD-~EKD~fLk~~IKLF~RINsn~~G~~ 110 (447)
T 1z7h_A 76 YYDPNYLRTD-SDKDRFLQTMVKLFNRIKNNVAGEA 110 (447)
T ss_dssp CCCTTTTCSH-HHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred eeCccccccc-hhHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4467777766 8899999999999999998877654
No 50
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: CAC; 2.20A {Bacillus subtilis}
Probab=20.83 E-value=31 Score=28.37 Aligned_cols=72 Identities=19% Similarity=0.344 Sum_probs=41.8
Q ss_pred CCccccccCCCCCCCCccccCCCCCCC-CCCCHHHHHHHHh----cCCHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHH
Q psy2476 9 AFRKIDVDQYNEDNYKEEEQGEVPQLG-AGVDESEILSLLN----QGKHQDALKTVLKNAPLGSKNQHVKDSALNLTLKV 83 (151)
Q Consensus 9 ~~RkIDVD~~d~d~f~~~~~~~~~~~~-~~~~~~qvr~ll~----~gd~~~ALk~aL~npP~g~~~~~~K~~~~~~Vl~v 83 (151)
-|=.||||.+||....-- ..|+ -+-...|+..+++ +++. -++-.+=-||+|...+ .+=..+..++.+.
T Consensus 240 vylSiDiDvLDpa~aPgt-----gtp~pgGlt~~e~~~il~~l~~~~~v-vg~DivEv~P~~D~~~-~Ta~laa~li~~~ 312 (322)
T 3m1r_A 240 IFISVDMDVLDQSHAPGC-----PAIGPGGLYTDELLEAVKYIAQQPNV-AGIEIVEVDPTLDFRD-MTSRAAAHVLLHA 312 (322)
T ss_dssp EEEEEEGGGBCTTTCTTS-----SSCCSSCBCHHHHHHHHHHHHTSTTE-EEEEEECCCGGGSSTT-HHHHHHHHHHHHH
T ss_pred EEEEEeecccChhhCCCC-----CCCCCCCCCHHHHHHHHHHHhccCCE-EEEEEEEECCCCCCCC-hHHHHHHHHHHHH
Confidence 356799999999543211 1222 3446677766654 2222 2233334588897655 5556667777777
Q ss_pred HHhh
Q psy2476 84 LLAI 87 (151)
Q Consensus 84 L~s~ 87 (151)
|..+
T Consensus 313 l~~~ 316 (322)
T 3m1r_A 313 LKGM 316 (322)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7655
No 51
>2a97_A BONT/F, botulinum neurotoxin type F, bontoxilysin F; clostridium botulinum neurotoxin serotype F, light chain, catalytic domain, X-RAY,; 1.80A {Clostridium botulinum} PDB: 2a8a_A 3fie_A 3fii_A
Probab=20.68 E-value=88 Score=27.69 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=29.5
Q ss_pred hcCCCCCCCChHHHHHHHHHHHHHHHhhhhccHHHHH
Q psy2476 60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETV 96 (151)
Q Consensus 60 L~npP~g~~~~~~K~~~~~~Vl~vL~s~K~sdI~~~v 96 (151)
-=||=|=+-| +-||++|++|+..+..|.+.++-+.+
T Consensus 72 yYDpnYLsTD-~EKD~fLk~~IKLf~RINsn~~G~~L 107 (439)
T 2a97_A 72 YYDPNYLTTD-AEKDRYLKTTIKLFKRINSNPAGKVL 107 (439)
T ss_dssp CBCTTTTCSH-HHHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred eeCccccccc-hhHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 4567777766 88999999999999999988776543
No 52
>2fpq_A Botulinum neurotoxin D light chain; hexxh metalloprotease; 1.65A {Clostridium botulinum}
Probab=20.32 E-value=90 Score=27.65 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=29.6
Q ss_pred hcCCCCCCCChHHHHHHHHHHHHHHHhhhhccHHHHH
Q psy2476 60 LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETV 96 (151)
Q Consensus 60 L~npP~g~~~~~~K~~~~~~Vl~vL~s~K~sdI~~~v 96 (151)
-=||=|=+.| +-||.+|++|++.|..|++.++-+.+
T Consensus 79 yYDpnYLsTD-~EKD~fLk~iiKLf~RInsn~~G~~L 114 (444)
T 2fpq_A 79 YYDPSYLSTD-EQKDTFLKGIIKLFKRINERDIGKKL 114 (444)
T ss_dssp CBCTTTTCSH-HHHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred eeCccccccc-cccchHHHHHHHHHHHhccchHHHHH
Confidence 4567777766 88999999999999999998876553
Done!