RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2476
         (151 letters)



>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller,
           structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1
           PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G*
           2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
          Length = 151

 Score =  199 bits (508), Expect = 4e-67
 Identities = 79/152 (51%), Positives = 108/152 (71%), Gaps = 3/152 (1%)

Query: 1   MAKNTSSSA-FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTV 59
           M+KNT SSA FRK+DVD+Y+E+ + +E+ G   Q G   DE E+ S L QG    AL+  
Sbjct: 1   MSKNTVSSARFRKVDVDEYDENKFVDEDDGGDGQAGP--DEGEVDSCLRQGNMTAALQAA 58

Query: 60  LKNAPLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPS 119
           LKN P+ +K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS
Sbjct: 59  LKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPS 118

Query: 120 EKSSSHLLTWHEKVFAIGGLGSIVRVLTDSKR 151
           + SS+ LL WHEK  A GG+GSIVRVLT  K 
Sbjct: 119 DNSSAVLLQWHEKALAAGGVGSIVRVLTARKT 150


>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor,
           actin-binding, ATP-binding, cytoskeleton, nucleot
           binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
           pombe}
          Length = 152

 Score =  183 bits (467), Expect = 6e-61
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 7/149 (4%)

Query: 10  FRKIDVDQYNEDNYKEEEQGEVPQLGAGVDES-------EILSLLNQGKHQDALKTVLKN 62
           FR +DVD   E    E++   +    A   ++       +  S +  G     LKT+L  
Sbjct: 3   FRTLDVDSITEPVLTEQDIFPIRNETAEQVQAAVSQLIPQARSAIQTGNALQGLKTLLSY 62

Query: 63  APLGSKNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKS 122
            P G+  Q V+   LN  + VL  I+++ +   V     + +D ++ +IY+G   P   +
Sbjct: 63  VPYGNDVQEVRTQYLNAFVDVLSNIRAADIPAFVKECSTEEIDNIVNFIYRGLANPQAYN 122

Query: 123 SSHLLTWHEKVFAIGGLGSIVRVLTDSKR 151
           SS LL WHEKV  I G+G IVRVL     
Sbjct: 123 SSVLLNWHEKVVEISGIGCIVRVLNSRPD 151


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.0 bits (80), Expect = 0.007
 Identities = 33/169 (19%), Positives = 56/169 (33%), Gaps = 58/169 (34%)

Query: 20  EDNYKEEEQGEVPQLG-AGVDESEILSLLNQ-GKHQDALKTV---LKNAPLGSKNQHV-- 72
           ED+ +  E    P L  + + + ++   +N+   H  A K V   L N         V  
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA----KNLVVS 380

Query: 73  ---KD-SALNLTLKVLLA--------IKSSQ--------------------MDETVSNLD 100
              +    LNLTL+   A        I  S+                    +      ++
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN 440

Query: 101 QDLLDTLMKYIYKGFEIPSEKSSSHLLTWHEKVFAIGGLGSIVRVLTDS 149
           +DL+   + +  K  +IP              V+     GS +RVL+ S
Sbjct: 441 KDLVKNNVSFNAKDIQIP--------------VYDTFD-GSDLRVLSGS 474


>3k9i_A BH0479 protein; putative protein binding protein, structural
          genomics, joint for structural genomics, JCSG; 2.71A
          {Bacillus halodurans}
          Length = 117

 Score = 24.7 bits (54), Expect = 9.8
 Identities = 6/31 (19%), Positives = 17/31 (54%)

Query: 44 LSLLNQGKHQDALKTVLKNAPLGSKNQHVKD 74
          + L N G+++  ++ +LK     S ++ ++ 
Sbjct: 69 MVLYNLGRYEQGVELLLKIIAETSDDETIQS 99


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.310    0.128    0.344 

Gapped
Lambda     K      H
   0.267   0.0680    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,042,087
Number of extensions: 106452
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 7
Length of query: 151
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,328,508
Effective search space: 285681528
Effective search space used: 285681528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.3 bits)