RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2476
         (151 letters)



>d1k8kg_ a.118.13.1 (G:) Arp2/3 complex 16 kDa subunit ARPC5 {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 143

 Score =  196 bits (501), Expect = 2e-66
 Identities = 73/144 (50%), Positives = 102/144 (70%), Gaps = 2/144 (1%)

Query: 8   SAFRKIDVDQYNEDNYKEEEQGEVPQLGAGVDESEILSLLNQGKHQDALKTVLKNAPLGS 67
           + FRK+DVD+Y+E+ + +E+ G   Q  AG DE E+ S L QG    AL+  LKN P+ +
Sbjct: 1   ARFRKVDVDEYDENKFVDEDDGGDGQ--AGPDEGEVDSCLRQGNMTAALQAALKNPPINT 58

Query: 68  KNQHVKDSALNLTLKVLLAIKSSQMDETVSNLDQDLLDTLMKYIYKGFEIPSEKSSSHLL 127
           K+Q VKD A ++ LKVL++ K++ +++ V +LD++ +D LMKYIYKGFE PS+ SS+ LL
Sbjct: 59  KSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDNSSAVLL 118

Query: 128 TWHEKVFAIGGLGSIVRVLTDSKR 151
            WHEK  A GG+GSIVRVLT  K 
Sbjct: 119 QWHEKALAAGGVGSIVRVLTARKT 142


>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130
          {Methanocaldococcus jannaschii [TaxId: 2190]}
          Length = 220

 Score = 25.8 bits (55), Expect = 2.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 18 YNEDNYKEEEQGEVPQ 33
          Y E+N+K+ E GE+P+
Sbjct: 3  YKEENFKKTEIGEIPE 18


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.128    0.344 

Gapped
Lambda     K      H
   0.267   0.0397    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 476,889
Number of extensions: 18383
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 6
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 49 (23.5 bits)