BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2479
(156 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17RB8|LONF1_HUMAN LON peptidase N-terminal domain and RING finger protein 1 OS=Homo
sapiens GN=LONRF1 PE=2 SV=2
Length = 773
Score = 76.6 bits (187), Expect = 6e-14, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 50/80 (62%)
Query: 66 DSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGILATTCIE 125
D SDF+C LC ++PVTTPCGHS+C CL+RCLD++ CPLCK SL + C+
Sbjct: 473 DVSDFECSLCMRLFFEPVTTPCGHSFCKNCLERCLDHAPYCPLCKESLKEYLADRRYCVT 532
Query: 126 KRLKAINKTFELIDQSERSQ 145
+ L+ + + + SER +
Sbjct: 533 QLLEELIVKYLPDELSERKK 552
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 12/39 (30%)
Query: 72 CILCRSTIWKPVTTPCGHSY------------CWMCLDR 98
C+ CR + +PVT PCGHSY C +C DR
Sbjct: 123 CLGCRGFLSEPVTVPCGHSYCRRCLRRELRARCRLCRDR 161
>sp|Q8HXH0|LONF3_MACFA LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca
fascicularis GN=LONRF3 PE=2 SV=1
Length = 718
Score = 76.3 bits (186), Expect = 8e-14, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 42/58 (72%)
Query: 57 SLKIDLTRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLA 114
+L + L D+SD +C LC ++PVTTPCGH++C CL+RCLD+++ CPLCK L+
Sbjct: 411 ALSLPLASFDASDLECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLS 468
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 70 FDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLA 114
F C C + PV+ CGH++C +CL+R C LC L+
Sbjct: 156 FKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVKLS 200
>sp|Q496Y0|LONF3_HUMAN LON peptidase N-terminal domain and RING finger protein 3 OS=Homo
sapiens GN=LONRF3 PE=1 SV=1
Length = 759
Score = 76.3 bits (186), Expect = 8e-14, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 42/58 (72%)
Query: 57 SLKIDLTRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLA 114
+L + L D+SD +C LC ++PVTTPCGH++C CL+RCLD+++ CPLCK L+
Sbjct: 452 ALSLPLASFDASDLECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLS 509
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 70 FDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLA 114
F C C + PV+ CGH++C +CL+R C LC L+
Sbjct: 156 FKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVKLS 200
>sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2 OS=Homo
sapiens GN=LONRF2 PE=2 SV=3
Length = 754
Score = 75.1 bits (183), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 40/51 (78%)
Query: 66 DSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADV 116
D +DF+C LC +++PVTTPCGH++C CL+RCLD++ CPLCK L+++
Sbjct: 443 DVTDFECALCMRLLFEPVTTPCGHTFCLKCLERCLDHAPHCPLCKDKLSEL 493
Score = 32.7 bits (73), Expect = 0.85, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 64 RADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLD 97
RA C CR + KPVT PCG + C C++
Sbjct: 135 RAPRDLLGCPRCRRLLHKPVTLPCGLTVCKRCVE 168
>sp|Q9D4H7|LONF3_MOUSE LON peptidase N-terminal domain and RING finger protein 3 OS=Mus
musculus GN=Lonrf3 PE=2 SV=1
Length = 753
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/48 (56%), Positives = 37/48 (77%)
Query: 66 DSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSL 113
D+SD +C LC ++PVTTPCGH++C CL+RCLD+++ CPLCK L
Sbjct: 455 DASDLECSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDVL 502
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 70 FDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLA 114
F C C + PV+ CGH++C +CL+R C LC L+
Sbjct: 157 FKCKKCHGFLSDPVSLWCGHTFCKLCLERGRAADRRCALCGVKLS 201
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 72 CILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSL 113
CI+CR I + T CGH YC CL+ L +SSSCP+CKT L
Sbjct: 1092 CIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPMCKTKL 1133
>sp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1
PE=1 SV=1
Length = 249
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 11/78 (14%)
Query: 48 LKNTEFQPSSLKIDLTRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSS--- 104
K+ + +P ++ + D S+FDC +C ++ +PV T CGH +CW C+ + LD S
Sbjct: 24 FKSKKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFST 83
Query: 105 --------SCPLCKTSLA 114
CP+CK+ ++
Sbjct: 84 SDEYQRHRQCPVCKSKVS 101
>sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10
PE=1 SV=1
Length = 381
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 28 SSEARKIPVLLTRILTEVDKLKNTEFQPSSLKIDLTRADSSDFDCILCRSTIWKPVTTPC 87
+S R +PVL E L +E + + + + + C LC ST P TPC
Sbjct: 288 TSGGRGLPVL-----NEEGNLITSEAEKGNWSTSDSTSTEAVGKCTLCLSTRQHPTATPC 342
Query: 88 GHSYCWMCLDRCLDYSSSCPLCKT 111
GH +CW C+ + CPLC+T
Sbjct: 343 GHVFCWSCIMEWCNEKQECPLCRT 366
>sp|Q5E9G4|TRI10_BOVIN Tripartite motif-containing protein 10 OS=Bos taurus GN=TRIM10 PE=2
SV=1
Length = 489
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 7/51 (13%)
Query: 67 SSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSS-------SCPLCK 110
+ + +C +C+ T+ +PVT CGH++C +CL R L+ +S +CPLCK
Sbjct: 11 ADEVNCPVCQGTLREPVTIDCGHNFCRVCLTRYLEITSPDPEEPPTCPLCK 61
>sp|O60106|YOXA_SCHPO LON peptidase N-terminal domain and RING finger protein C14F5.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC14F5.10c PE=4 SV=1
Length = 486
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 67 SSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGIL 119
S + +C +C ++ PV +PCGH++C CL + L S CP C+ L +L
Sbjct: 164 SRELECQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQCPTCRFGLPSPVVL 216
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 70 FDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSL 113
+C +C + +P TT CGH+YC+ CL L S SCP C+ L
Sbjct: 83 LECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKL 126
>sp|Q8VDF2|UHRF1_MOUSE E3 ubiquitin-protein ligase UHRF1 OS=Mus musculus GN=Uhrf1 PE=1
SV=2
Length = 782
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 51 TEFQPSSLKIDLTRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSS-SCPLC 109
T Q +I L++ + F CI C+ +++PVTT C H+ C CLDR SCP C
Sbjct: 693 TSLQDGPYQIFLSKVKEA-FQCICCQELVFRPVTTVCQHNVCKDCLDRSFRAQVFSCPAC 751
Query: 110 KTSL 113
+ L
Sbjct: 752 RFEL 755
>sp|Q96T88|UHRF1_HUMAN E3 ubiquitin-protein ligase UHRF1 OS=Homo sapiens GN=UHRF1 PE=1
SV=1
Length = 793
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 48 LKNTEFQPSSLKIDLTRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSS-SC 106
LK+ S ++ L++ + + F CI C+ +++P+TT C H+ C CLDR SC
Sbjct: 701 LKDRPASGSPFQLFLSKVEET-FQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSC 759
Query: 107 PLCKTSLA 114
P C+ L
Sbjct: 760 PACRYDLG 767
>sp|Q6FXX1|CWC24_CANGA Pre-mRNA-splicing factor CWC24 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=CWC24 PE=3 SV=1
Length = 226
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 63 TRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGILATT 122
TR ++ F C+LC+ + +PV T CGH +C C + SC +C + + +AT
Sbjct: 156 TRKEAVPFKCVLCKESYERPVKTNCGHYFCQKCFVNRIKIDKSCFICGENTEGIAKMATD 215
Query: 123 CI 124
+
Sbjct: 216 LV 217
>sp|P33288|RAD18_NEUCR Postreplication repair E3 ubiquitin-protein ligase rad-18
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=uvs-2 PE=3 SV=2
Length = 501
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 70 FDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGILATTCIEKRLK 129
F C +C+ P+ T C H++C +C+ RCL S CPLC+ + + + + + ++
Sbjct: 32 FRCHVCKDFYDSPMLTSCNHTFCSLCIRRCLSVDSKCPLCRATDQESKLRGNWALREAVE 91
Query: 130 AINKTFELIDQSERSQEFTMAPP 152
A + +++ EF PP
Sbjct: 92 AFKNSRKVL------LEFARTPP 108
>sp|O19085|TRI10_PIG Tripartite motif-containing protein 10 OS=Sus scrofa GN=TRIM10 PE=3
SV=2
Length = 482
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 7/49 (14%)
Query: 69 DFDCILCRSTIWKPVTTPCGHSYCWMCLDR-----CLDYSS--SCPLCK 110
+ +C +C+ T+ +PVT CGH++C +CL R CLD +CPLCK
Sbjct: 13 EVNCPICQGTLREPVTIDCGHNFCCVCLTRYLEIPCLDPGELPTCPLCK 61
>sp|Q7TPK1|UHRF1_RAT E3 ubiquitin-protein ligase UHRF1 OS=Rattus norvegicus GN=Uhrf1
PE=2 SV=2
Length = 774
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 51 TEFQPSSLKIDLTRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSS-SCPLC 109
+ Q +I L++ + F CI C+ +++PVTT C H+ C CLDR SCP C
Sbjct: 685 SSLQDGPYQIFLSKVKEA-FQCICCQELVFRPVTTVCQHNVCKDCLDRSFRAQVFSCPAC 743
Query: 110 KTSL 113
+ L
Sbjct: 744 RYDL 747
>sp|A7E320|UHRF1_BOVIN E3 ubiquitin-protein ligase UHRF1 OS=Bos taurus GN=UHRF1 PE=2 SV=1
Length = 786
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 70 FDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSS-SCPLCKTSLA 114
F CI C+ +++P+TT C H+ C CLDR SCP C+ L
Sbjct: 715 FQCICCQELVFRPITTVCQHNVCKDCLDRSFKAQVFSCPACRYDLG 760
>sp|Q95KF1|RN125_MACFA E3 ubiquitin-protein ligase RNF125 OS=Macaca fascicularis GN=RNF125
PE=2 SV=3
Length = 232
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 68 SDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSS-SCPLCKTSLADVGILATTCIEK 126
+ FDC +C + +PV T CGH +C C+ L + +CP C+ L G+ AT + K
Sbjct: 33 TSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSEGVPATD-VAK 91
Query: 127 RLKAINKT 134
R+K+ K
Sbjct: 92 RMKSEYKN 99
>sp|Q96EQ8|RN125_HUMAN E3 ubiquitin-protein ligase RNF125 OS=Homo sapiens GN=RNF125 PE=1
SV=4
Length = 232
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 68 SDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSS-SCPLCKTSLADVGILATTCIEK 126
+ FDC +C + +PV T CGH +C C+ L + +CP C+ L G+ AT + K
Sbjct: 33 TSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSEGVPATD-VAK 91
Query: 127 RLKAINKT 134
R+K+ K
Sbjct: 92 RMKSEYKN 99
>sp|B6CHA3|UHRF1_XENLA E3 ubiquitin-protein ligase UHRF1 OS=Xenopus laevis GN=uhrf1 PE=2
SV=1
Length = 772
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 70 FDCILCRSTIWKPVTTPCGHSYCWMCLDRCLD-YSSSCPLCKTSLADVGILATTCIEKRL 128
F CI C+ +++PVTT C H+ C CLDR SCP C+ D+G + K L
Sbjct: 701 FLCICCQEVVYEPVTTECHHNICKGCLDRSFKALVHSCPACR---HDLGKNYPLNVNKPL 757
Query: 129 KAI 131
+AI
Sbjct: 758 QAI 760
>sp|Q6CTZ8|RAD18_KLULA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RAD18
PE=3 SV=1
Length = 427
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 72 CILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLAD 115
C +C+ + V TPCGHS+C +C+ + L S CPLC + L +
Sbjct: 32 CHICKDFLKASVLTPCGHSFCSICIRKYLQKESKCPLCLSDLTE 75
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 72 CILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLAD--------VGILATTC 123
C +C+ + PV T CGH++C +C+ L+ S CPLC L VG LA
Sbjct: 32 CHICKDMLQTPVLTQCGHTFCSLCIREYLNKESRCPLCLAELRQNMLQKEFLVGELAACY 91
Query: 124 IEKRLKAI 131
+E R + +
Sbjct: 92 MELRARLL 99
>sp|P93471|COP1_PEA E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1
Length = 672
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 69 DFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGILATTCIEKRL 128
DF C +C I T CGHS+C+MC+ L S CP C L + + ++K L
Sbjct: 44 DFLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNSNLFPNFLLDKLL 103
Query: 129 K 129
K
Sbjct: 104 K 104
>sp|Q12161|PSH1_YEAST RING finger protein PSH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PSH1 PE=1 SV=1
Length = 406
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 72 CILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSS----SCPLCKTSLADVGILATT 122
C +C ++ P+ TPCGH+YC+ CL+ ++ +CP C++ + + L TT
Sbjct: 30 CSICHDYMFVPMMTPCGHNYCYGCLNTWFASNTQKELACPQCRSDITTIPALNTT 84
>sp|F6UA42|UHRF1_XENTR E3 ubiquitin-protein ligase UHRF1 OS=Xenopus tropicalis GN=uhrf1
PE=3 SV=2
Length = 775
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 70 FDCILCRSTIWKPVTTPCGHSYCWMCLDRCLD-YSSSCPLCKTSLADVGILATTCIEKRL 128
F CI C+ +++P+TT C H+ C CLDR +CP C+ D+G + + K L
Sbjct: 704 FLCICCQEVVYEPITTECHHNICKGCLDRSFKALVHNCPACR---HDLGKNYSLNVNKPL 760
Query: 129 KAI 131
+AI
Sbjct: 761 QAI 763
>sp|Q6J2U6|RN114_RAT RING finger protein 114 OS=Rattus norvegicus GN=Rnf114 PE=2 SV=1
Length = 229
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 68 SDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSS-CPLCKTSLADVGILATTCIEK 126
S F C +C KPV PCGH +C CL CL C +C+++LA G+ A +E+
Sbjct: 26 SRFTCPVCLEVFEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSALAP-GVRAAE-LER 83
Query: 127 RLKAINKT 134
++++I +
Sbjct: 84 QIESIETS 91
>sp|Q5A4N5|RAD18_CANAL Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=RAD18 PE=3
SV=1
Length = 378
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 72 CILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGILATTCIEK 126
C +C+ + PV T C H+YC C+ L + CPLCKT + + G+ +E+
Sbjct: 29 CYICKDLLNAPVRTQCDHTYCSQCIREFLLRDNRCPLCKTEVFESGLKRDPLLEE 83
>sp|Q9ET26|RN114_MOUSE RING finger protein 114 OS=Mus musculus GN=Rnf114 PE=2 SV=2
Length = 229
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 68 SDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSS-CPLCKTSLADVGILATTCIEK 126
S F C +C KPV PCGH +C CL CL C +C+++LA G+ A +E+
Sbjct: 26 SRFTCPVCLEVFEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSALAP-GVRAVE-LER 83
Query: 127 RLKAI 131
++++I
Sbjct: 84 QIESI 88
>sp|Q9UDY6|TRI10_HUMAN Tripartite motif-containing protein 10 OS=Homo sapiens GN=TRIM10
PE=2 SV=3
Length = 481
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 67 SSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRC-------LDYSSSCPLCK 110
+ + +C +C+ T+ +PVT CGH++C CL R L+ S +CPLCK
Sbjct: 11 ADEVNCPICQGTLREPVTIDCGHNFCRACLTRYCEIPGPDLEESPTCPLCK 61
>sp|P10862|RAD18_YEAST Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RAD18 PE=1 SV=1
Length = 487
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 72 CILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLC 109
C +C+ + PV TPCGH++C +C+ L+ +CPLC
Sbjct: 28 CHICKDFLKVPVLTPCGHTFCSLCIRTHLNNQPNCPLC 65
>sp|Q4WZJ6|RAD18_ASPFU Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=rad18 PE=3 SV=1
Length = 418
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 68 SDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGILATTCIEKR 127
S C +C+ PV T C H++C +C+ RCL CP C++S ++ + +++
Sbjct: 26 SSLRCQVCKDFFDNPVITSCSHTFCSLCIRRCLSTEGKCPACRSSDQELKLRRNWAVQEL 85
Query: 128 LKAI 131
++A
Sbjct: 86 VEAF 89
>sp|Q7YR32|TRI10_PANTR Tripartite motif-containing protein 10 OS=Pan troglodytes GN=TRIM10
PE=3 SV=1
Length = 481
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 67 SSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRC-------LDYSSSCPLCK 110
+ + +C +C+ T+ +PVT CGH++C CL R L+ S +CPLCK
Sbjct: 11 ADEVNCPICQGTLREPVTIDCGHNFCRACLTRYCEIPGPDLEESPTCPLCK 61
>sp|Q8N448|LNX2_HUMAN Ligand of Numb protein X 2 OS=Homo sapiens GN=LNX2 PE=1 SV=1
Length = 690
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 69 DFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSL 113
D C +C + +P+ TPCGH++C+ CL L CPL + L
Sbjct: 47 DLVCHICLQPLLQPLDTPCGHTFCYKCLRNFLQEKDFCPLDRKRL 91
>sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1
PE=1 SV=1
Length = 252
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 57 SLKIDLTRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSS-----------S 105
S+ ++ S FDC +C + +PV T CGH YCW C+ + + + S
Sbjct: 26 SMNDEVEENISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSDQQQPQ 85
Query: 106 CPLCKTSLAD 115
CP+CK +++
Sbjct: 86 CPVCKAEVSE 95
>sp|E7EZF3|UHRF1_DANRE E3 ubiquitin-protein ligase UHRF1 OS=Danio rerio GN=uhrf1 PE=1 SV=1
Length = 776
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 70 FDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSS-SCPLCKTSLADVGILATTCIEKRL 128
F CI C+ +++P+TT C H+ C CL R +CP C+ D+G + K L
Sbjct: 704 FLCICCQEVVYQPITTECQHNVCRECLQRSFKAKVYTCPACR---HDLGKNYQMAVNKPL 760
Query: 129 KAI 131
+AI
Sbjct: 761 QAI 763
>sp|Q9D9R0|RN125_MOUSE E3 ubiquitin-protein ligase RNF125 OS=Mus musculus GN=Rnf125 PE=2
SV=3
Length = 233
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 68 SDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSS--SCPLCKTSLADVGILATTCIE 125
+ FDC +C + +PV T CGH +C C+ + ++ +CP C+ L G+ AT I
Sbjct: 33 TSFDCSVCLEVLHQPVRTRCGHVFCRSCIATSIKNNNKWTCPYCRAYLPSEGVPATD-IA 91
Query: 126 KRLKA 130
KR+K+
Sbjct: 92 KRMKS 96
>sp|Q6FPI4|RAD18_CANGA Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=RAD18 PE=3 SV=1
Length = 411
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 72 CILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLC 109
C +C+ + PV TPCGH++C +C+ L CPLC
Sbjct: 27 CHICKDFLKNPVLTPCGHTFCSLCIRGYLSNEPKCPLC 64
>sp|Q02084|A33_PLEWA Zinc-binding protein A33 OS=Pleurodeles waltl PE=1 SV=2
Length = 625
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 72 CILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSS--SCPLCKTSLAD 115
C LCRS +PV CGH++C C+D+ + +S SCP CK L +
Sbjct: 163 CPLCRSLFKEPVILECGHNFCKHCIDKSWESASAFSCPECKEVLTE 208
>sp|Q03605|YNN1_CAEEL Uncharacterized RING finger protein T02C1.1 OS=Caenorhabditis
elegans GN=T02C1.1 PE=4 SV=1
Length = 160
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 69 DFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLAD 115
DF C +C +P CGHSYC C++ L+ + CPLC+ +
Sbjct: 5 DFCCAVCLDFFVEPCIIECGHSYCRFCIESHLNINEKCPLCRAHTGN 51
>sp|Q3KPU8|RN166_XENLA RING finger protein 166 OS=Xenopus laevis GN=rnf166 PE=2 SV=1
Length = 241
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 63 TRADS--SDFDCILCRSTIWKPVT-TPCGHSYCWMCLDRCLDYSSS-CPLCKTSLADVGI 118
+ ADS + F C +C +KPV CGH++C CL CL SS CPLC+ +
Sbjct: 26 SSADSLETQFGCPICLEVYYKPVAIGSCGHTFCGECLQPCLQVSSPLCPLCRMPFDPKKV 85
Query: 119 LATTCIEKRLKA 130
+ ++K+L +
Sbjct: 86 DKASNVDKQLSS 97
>sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3
PE=1 SV=1
Length = 243
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 10/54 (18%)
Query: 70 FDCILCRSTIWKPVTTPCGHSYCWMCLDRCL----------DYSSSCPLCKTSL 113
FDC +C T PV T CGH +CW C+ + L + ++CP+CK+++
Sbjct: 42 FDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNI 95
>sp|P43254|COP1_ARATH E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1
PE=1 SV=2
Length = 675
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 69 DFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGILATTCIEKRL 128
D C +C I T CGHS+C+MC+ L S CP C L + + ++K L
Sbjct: 49 DLLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQLYPNFLLDKLL 108
Query: 129 KA-----INKTFELIDQ 140
K ++KT +DQ
Sbjct: 109 KKTSARHVSKTASPLDQ 125
>sp|O60683|PEX10_HUMAN Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1
Length = 326
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 64 RADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCK 110
RA S + C LC P TPCGH +CW C+ + CPLC+
Sbjct: 265 RAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCR 311
>sp|Q752S4|CWC24_ASHGO Pre-mRNA-splicing factor CWC24 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CWC24
PE=3 SV=1
Length = 250
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 66 DSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADV 116
DS F C+LCR PV T CGH +C C R + + C +C V
Sbjct: 152 DSIPFRCVLCRGHYRAPVRTRCGHYFCGGCFARRVRETRQCAVCGADTQGV 202
>sp|Q8HXW8|PEX10_MACFA Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10
PE=2 SV=1
Length = 326
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 64 RADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCK 110
RA S + C LC P TPCGH +CW C+ + CPLC+
Sbjct: 265 RAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCR 311
>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1
SV=2
Length = 733
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 67 SSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGIL 119
S+DF C +C I + T CGHS+C+ C+ + L+ ++ CP C + ++ L
Sbjct: 133 SNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHL 185
>sp|Q681I0|ORTHL_ARATH E3 ubiquitin-protein ligase ORTHRUS-LIKE 1 OS=Arabidopsis thaliana
GN=ORTHL PE=2 SV=1
Length = 465
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 40 RILT---EVDKLKNTEFQPSSLK--IDLTRADSSDFDCILCRSTIWKPVTTPCGHSYCWM 94
RIL+ E D+ ++ + +SL +D A D +C LC +PVT CGH++C
Sbjct: 72 RILSGDCEADENNKSDGEIASLNDGVDAFTAICEDLNCSLCNQLPDRPVTILCGHNFCLK 131
Query: 95 CLDRCLDYSSS-CPLCKTSLAD 115
C D+ +D + C C++++ D
Sbjct: 132 CFDKWIDQGNQICATCRSTIPD 153
>sp|Q8C0E3|TRI47_MOUSE Tripartite motif-containing protein 47 OS=Mus musculus GN=Trim47
PE=2 SV=2
Length = 641
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 67 SSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSS-----------CPLCKTSLAD 115
S F C +C + +PVT PCGH++C CL + S+ CPLC+ D
Sbjct: 4 SGPFSCPICLEPLREPVTLPCGHNFCLACLGALWPHRSAGGTGGSGGPARCPLCQEPFPD 63
>sp|Q02398|RAD18_EMENI Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=uvsH PE=2 SV=1
Length = 443
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 72 CILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTS 112
C +C+ PV T C H++C +C+ RCL CP C++S
Sbjct: 30 CQVCKDFFDNPVITSCSHTFCSLCIRRCLSTEGKCPTCRSS 70
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,660,840
Number of Sequences: 539616
Number of extensions: 1821191
Number of successful extensions: 6076
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 256
Number of HSP's that attempted gapping in prelim test: 5455
Number of HSP's gapped (non-prelim): 824
length of query: 156
length of database: 191,569,459
effective HSP length: 107
effective length of query: 49
effective length of database: 133,830,547
effective search space: 6557696803
effective search space used: 6557696803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)