Query psy2479
Match_columns 156
No_of_seqs 140 out of 1873
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 17:19:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2479.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2479hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kr4_A Ubiquitin conjugation f 99.7 2.3E-18 8E-23 111.3 4.2 74 64-141 9-82 (85)
2 1t1h_A Gspef-atpub14, armadill 99.7 1.3E-18 4.6E-23 110.3 3.0 71 65-139 4-75 (78)
3 1wgm_A Ubiquitin conjugation f 99.7 1.1E-17 3.8E-22 110.8 6.7 77 63-143 16-93 (98)
4 2kre_A Ubiquitin conjugation f 99.7 4.8E-18 1.6E-22 113.0 4.8 76 63-142 23-98 (100)
5 3ztg_A E3 ubiquitin-protein li 99.7 1.2E-17 4.2E-22 109.0 5.1 76 63-142 7-86 (92)
6 2y43_A E3 ubiquitin-protein li 99.7 2.7E-17 9.2E-22 108.9 3.0 75 63-141 16-91 (99)
7 3fl2_A E3 ubiquitin-protein li 99.7 3.2E-17 1.1E-21 112.8 3.1 70 64-137 47-118 (124)
8 3lrq_A E3 ubiquitin-protein li 99.7 1.5E-17 5E-22 110.5 1.2 74 64-141 17-92 (100)
9 4ayc_A E3 ubiquitin-protein li 99.7 3.4E-17 1.2E-21 114.7 2.9 68 66-135 50-117 (138)
10 2ckl_A Polycomb group ring fin 99.6 1.4E-16 4.8E-21 107.0 3.2 73 64-136 10-83 (108)
11 2djb_A Polycomb group ring fin 99.6 4.6E-16 1.6E-20 97.1 5.2 57 63-119 9-66 (72)
12 2ecy_A TNF receptor-associated 99.6 5.9E-16 2E-20 95.0 5.1 56 63-118 9-65 (66)
13 2yur_A Retinoblastoma-binding 99.6 4.8E-16 1.6E-20 97.6 4.5 56 63-118 9-67 (74)
14 2egp_A Tripartite motif-contai 99.6 1.8E-17 6.3E-22 105.1 -2.8 56 63-118 6-68 (79)
15 2yu4_A E3 SUMO-protein ligase 99.6 4E-16 1.4E-20 102.5 3.2 71 66-140 4-84 (94)
16 1z6u_A NP95-like ring finger p 99.6 4.7E-16 1.6E-20 110.5 3.5 70 64-137 73-144 (150)
17 2ysl_A Tripartite motif-contai 99.6 2.8E-15 9.5E-20 93.5 6.2 56 63-118 14-72 (73)
18 2csy_A Zinc finger protein 183 99.6 2.3E-15 8E-20 95.9 5.9 51 64-114 10-60 (81)
19 3l11_A E3 ubiquitin-protein li 99.6 7.8E-17 2.7E-21 109.4 -1.1 69 64-136 10-86 (115)
20 3hct_A TNF receptor-associated 99.6 1.6E-15 5.4E-20 103.5 4.2 66 62-127 11-77 (118)
21 2d8t_A Dactylidin, ring finger 99.6 2.1E-15 7.2E-20 93.9 3.8 53 65-117 11-63 (71)
22 2ea6_A Ring finger protein 4; 99.6 2.1E-15 7.2E-20 92.9 3.8 53 63-115 9-68 (69)
23 1jm7_A BRCA1, breast cancer ty 99.6 1.4E-15 4.9E-20 102.3 3.2 72 66-137 18-92 (112)
24 1jm7_B BARD1, BRCA1-associated 99.6 7.5E-16 2.6E-20 104.9 1.8 69 65-139 18-87 (117)
25 2ecw_A Tripartite motif-contai 99.6 4.9E-15 1.7E-19 94.7 5.5 57 63-119 13-75 (85)
26 2f42_A STIP1 homology and U-bo 99.5 2.3E-15 8E-20 109.4 4.2 72 64-139 101-173 (179)
27 2ckl_B Ubiquitin ligase protei 99.5 2E-15 6.9E-20 108.5 3.8 71 63-136 48-120 (165)
28 2c2l_A CHIP, carboxy terminus 99.5 1.8E-15 6.1E-20 116.3 3.7 72 64-139 203-275 (281)
29 2ecv_A Tripartite motif-contai 99.5 6.5E-15 2.2E-19 94.1 4.9 57 63-119 13-75 (85)
30 3ng2_A RNF4, snurf, ring finge 99.5 3.3E-15 1.1E-19 92.6 3.2 53 66-118 7-66 (71)
31 2ysj_A Tripartite motif-contai 99.5 1.4E-14 4.6E-19 88.0 5.2 47 63-109 14-63 (63)
32 2ct2_A Tripartite motif protei 99.5 1.2E-14 4.1E-19 93.7 4.7 55 63-117 9-70 (88)
33 2ect_A Ring finger protein 126 99.5 1.9E-14 6.5E-19 90.9 4.5 56 64-119 10-68 (78)
34 2xeu_A Ring finger protein 4; 99.5 8.4E-15 2.9E-19 88.9 2.5 51 68-118 2-59 (64)
35 2ecn_A Ring finger protein 141 99.5 1.1E-14 3.9E-19 90.1 2.7 55 63-118 9-63 (70)
36 2ecj_A Tripartite motif-contai 99.5 3.2E-14 1.1E-18 84.7 4.4 47 63-109 9-58 (58)
37 1rmd_A RAG1; V(D)J recombinati 99.5 1.2E-14 4.2E-19 98.6 2.8 56 64-119 18-74 (116)
38 1iym_A EL5; ring-H2 finger, ub 99.5 2.7E-14 9.3E-19 84.3 3.6 48 67-114 3-54 (55)
39 2kiz_A E3 ubiquitin-protein li 99.5 4.9E-14 1.7E-18 87.0 4.7 53 65-117 10-65 (69)
40 3knv_A TNF receptor-associated 99.5 1.6E-14 5.6E-19 101.5 2.4 51 64-114 26-77 (141)
41 1g25_A CDK-activating kinase a 99.4 5.9E-14 2E-18 85.7 4.3 51 68-118 2-58 (65)
42 3hcs_A TNF receptor-associated 99.4 3.4E-14 1.2E-18 102.5 3.6 65 62-126 11-76 (170)
43 1x4j_A Ring finger protein 38; 99.4 7.2E-14 2.5E-18 87.7 4.1 52 65-116 19-73 (75)
44 2ecm_A Ring finger and CHY zin 99.4 4.6E-14 1.6E-18 83.2 2.7 47 68-114 4-54 (55)
45 2l0b_A E3 ubiquitin-protein li 99.4 8.1E-14 2.8E-18 90.8 3.9 50 66-115 37-89 (91)
46 2ep4_A Ring finger protein 24; 99.4 6.9E-14 2.4E-18 87.4 3.4 55 64-118 10-67 (74)
47 1chc_A Equine herpes virus-1 r 99.4 5E-14 1.7E-18 86.6 2.5 48 68-115 4-52 (68)
48 4ap4_A E3 ubiquitin ligase RNF 99.4 1.5E-13 5.2E-18 94.5 3.2 52 67-118 5-63 (133)
49 1bor_A Transcription factor PM 99.4 8.7E-14 3E-18 82.7 1.3 48 67-117 4-51 (56)
50 3htk_C E3 SUMO-protein ligase 99.4 1.3E-13 4.3E-18 105.2 2.4 70 64-137 176-250 (267)
51 1v87_A Deltex protein 2; ring- 99.3 6.2E-13 2.1E-17 89.7 4.3 49 69-117 25-96 (114)
52 1e4u_A Transcriptional repress 99.3 1.1E-12 3.9E-17 83.1 4.6 54 65-118 7-65 (78)
53 2ecl_A Ring-box protein 2; RNF 99.3 9.8E-13 3.4E-17 83.8 3.7 49 68-116 14-77 (81)
54 4ic3_A E3 ubiquitin-protein li 99.3 1.4E-13 4.7E-18 86.4 -0.8 48 65-116 20-68 (74)
55 4ap4_A E3 ubiquitin ligase RNF 99.2 2.2E-12 7.6E-17 88.6 1.9 54 65-118 68-128 (133)
56 2ecg_A Baculoviral IAP repeat- 99.2 1.6E-12 5.5E-17 81.6 0.7 47 66-116 22-69 (75)
57 3dpl_R Ring-box protein 1; ubi 99.2 7.3E-12 2.5E-16 83.8 3.8 47 68-114 36-100 (106)
58 2vje_A E3 ubiquitin-protein li 99.2 5.5E-12 1.9E-16 76.9 2.3 48 68-115 7-57 (64)
59 2y1n_A E3 ubiquitin-protein li 99.2 7.7E-12 2.6E-16 100.5 3.7 52 67-118 330-382 (389)
60 2bay_A PRE-mRNA splicing facto 99.2 5.4E-12 1.8E-16 76.2 1.5 53 69-121 3-56 (61)
61 2vje_B MDM4 protein; proto-onc 99.1 1.2E-11 4.1E-16 75.1 2.4 47 69-115 7-56 (63)
62 2ea5_A Cell growth regulator w 99.1 6.6E-11 2.3E-15 72.9 3.8 46 67-116 13-59 (68)
63 2yho_A E3 ubiquitin-protein li 99.1 6.6E-12 2.2E-16 79.7 -1.2 47 66-116 15-62 (79)
64 4a0k_B E3 ubiquitin-protein li 99.0 4.6E-11 1.6E-15 81.1 0.1 46 69-114 48-111 (117)
65 1wim_A KIAA0161 protein; ring 99.0 9.1E-11 3.1E-15 76.5 0.9 66 68-138 4-84 (94)
66 2d8s_A Cellular modulator of i 98.9 6.7E-10 2.3E-14 70.5 3.9 51 67-117 13-72 (80)
67 3t6p_A Baculoviral IAP repeat- 98.9 1.8E-10 6.2E-15 91.6 0.8 48 65-116 291-339 (345)
68 2ct0_A Non-SMC element 1 homol 98.7 3.4E-08 1.2E-12 61.6 5.8 49 68-116 14-65 (74)
69 3vk6_A E3 ubiquitin-protein li 98.4 1.2E-07 4.2E-12 61.7 3.2 48 70-117 2-51 (101)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.4 2.7E-07 9.4E-12 55.1 3.3 47 68-114 5-58 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 98.3 1.2E-07 4.1E-12 74.8 0.2 50 67-116 306-374 (381)
72 3m62_A Ubiquitin conjugation f 98.2 8.5E-07 2.9E-11 78.1 4.6 76 64-143 886-962 (968)
73 3nw0_A Non-structural maintena 97.3 0.0002 6.7E-09 54.0 4.4 48 69-116 180-230 (238)
74 2jun_A Midline-1; B-BOX, TRIM, 97.1 0.00016 5.5E-09 47.0 1.9 33 68-100 2-37 (101)
75 2cs3_A Protein C14ORF4, MY039 94.8 0.034 1.2E-06 34.5 3.7 52 67-118 13-79 (93)
76 2ko5_A Ring finger protein Z; 93.1 0.064 2.2E-06 34.3 2.7 49 68-118 27-76 (99)
77 3i2d_A E3 SUMO-protein ligase 92.6 0.088 3E-06 41.9 3.5 66 66-131 246-316 (371)
78 4fo9_A E3 SUMO-protein ligase 91.5 0.2 6.7E-06 39.8 4.2 65 65-129 211-280 (360)
79 1m3v_A FLIN4, fusion of the LI 85.2 0.47 1.6E-05 31.3 2.2 51 68-118 31-84 (122)
80 1z60_A TFIIH basal transcripti 85.1 0.71 2.4E-05 26.9 2.7 40 70-109 16-58 (59)
81 2lri_C Autoimmune regulator; Z 84.5 0.91 3.1E-05 26.9 3.1 44 68-113 11-60 (66)
82 3zyq_A Hepatocyte growth facto 83.6 0.33 1.1E-05 35.9 1.0 33 66-98 161-197 (226)
83 1wil_A KIAA1045 protein; ring 83.2 1.7 5.9E-05 27.1 4.0 36 63-99 9-47 (89)
84 1dvp_A HRS, hepatocyte growth 83.1 0.37 1.3E-05 35.3 1.1 33 66-98 158-194 (220)
85 1vfy_A Phosphatidylinositol-3- 78.1 0.97 3.3E-05 27.2 1.6 28 70-97 12-43 (73)
86 1joc_A EEA1, early endosomal a 77.9 0.69 2.4E-05 31.0 0.9 30 69-98 69-102 (125)
87 2yw8_A RUN and FYVE domain-con 76.0 1 3.5E-05 27.8 1.3 30 69-98 19-52 (82)
88 2k16_A Transcription initiatio 75.7 1.1 3.9E-05 26.9 1.4 49 66-114 15-70 (75)
89 1weo_A Cellulose synthase, cat 75.5 3.2 0.00011 26.2 3.4 46 69-114 16-69 (93)
90 1y02_A CARP2, FYVE-ring finger 74.9 0.17 5.8E-06 33.9 -2.7 44 69-112 19-66 (120)
91 1z2q_A LM5-1; membrane protein 74.7 1 3.6E-05 27.8 1.1 31 68-98 20-54 (84)
92 2fiy_A Protein FDHE homolog; F 74.2 0.38 1.3E-05 37.4 -1.3 46 67-112 180-231 (309)
93 2xjy_A Rhombotin-2; oncoprotei 73.8 1.7 5.9E-05 28.6 2.1 48 68-115 28-78 (131)
94 1rut_X Flinc4, fusion protein 73.5 0.94 3.2E-05 32.2 0.7 48 68-115 31-81 (188)
95 1nyp_A Pinch protein; LIM doma 73.4 2.4 8.2E-05 24.3 2.4 39 70-116 6-44 (66)
96 3mjh_B Early endosome antigen 73.0 0.76 2.6E-05 23.7 0.1 15 68-82 4-18 (34)
97 1x64_A Alpha-actinin-2 associa 72.5 5.3 0.00018 24.4 4.1 43 67-117 23-65 (89)
98 1wyh_A SLIM 2, skeletal muscle 72.2 3 0.0001 24.2 2.7 37 71-115 7-45 (72)
99 1x62_A C-terminal LIM domain p 72.1 2.6 8.8E-05 25.3 2.4 40 68-115 14-53 (79)
100 1x4u_A Zinc finger, FYVE domai 71.6 1.2 4E-05 27.6 0.7 29 69-97 14-46 (84)
101 3t7l_A Zinc finger FYVE domain 71.4 1.3 4.4E-05 27.8 0.9 31 69-99 20-54 (90)
102 2xqn_T Testin, TESS; metal-bin 70.6 2.7 9.4E-05 27.4 2.5 46 68-115 29-75 (126)
103 2l5u_A Chromodomain-helicase-D 70.4 3.1 0.00011 24.0 2.4 44 66-111 8-57 (61)
104 2dar_A PDZ and LIM domain prot 70.1 2.1 7.3E-05 26.4 1.7 40 69-116 25-64 (90)
105 2jmo_A Parkin; IBR, E3 ligase, 69.9 0.44 1.5E-05 29.3 -1.5 20 86-107 55-74 (80)
106 2cor_A Pinch protein; LIM doma 69.5 4 0.00014 24.4 2.9 40 69-116 15-54 (79)
107 1wfk_A Zinc finger, FYVE domai 69.3 1.2 4.1E-05 27.9 0.5 30 69-98 9-42 (88)
108 3fyb_A Protein of unknown func 69.0 1.6 5.6E-05 28.0 1.0 13 90-102 41-53 (104)
109 2o35_A Hypothetical protein DU 68.9 1.6 5.6E-05 28.0 1.0 13 90-102 42-54 (105)
110 1f62_A Transcription factor WS 68.1 1.9 6.6E-05 23.7 1.1 41 71-111 2-49 (51)
111 2rgt_A Fusion of LIM/homeobox 68.1 5.3 0.00018 27.6 3.7 33 68-100 32-64 (169)
112 2d8x_A Protein pinch; LIM doma 68.1 2 7E-05 25.0 1.3 38 71-116 7-44 (70)
113 2d8z_A Four and A half LIM dom 68.0 3.5 0.00012 23.8 2.4 36 71-114 7-42 (70)
114 2l43_A N-teminal domain from h 67.5 2.4 8.3E-05 26.5 1.6 53 65-117 21-80 (88)
115 2lv9_A Histone-lysine N-methyl 67.2 1.2 4.2E-05 28.4 0.2 44 67-111 26-75 (98)
116 1wig_A KIAA1808 protein; LIM d 66.8 3 0.0001 24.7 1.9 36 71-114 7-42 (73)
117 3mpx_A FYVE, rhogef and PH dom 65.5 1.3 4.4E-05 35.3 0.0 32 69-100 375-410 (434)
118 1wd2_A Ariadne-1 protein homol 65.3 0.56 1.9E-05 27.3 -1.6 33 70-102 7-47 (60)
119 1x4l_A Skeletal muscle LIM-pro 64.8 4.2 0.00014 23.7 2.3 36 71-114 7-46 (72)
120 1x6a_A LIMK-2, LIM domain kina 64.6 3.4 0.00012 24.7 1.8 36 71-114 17-52 (81)
121 1v6g_A Actin binding LIM prote 63.8 3.1 0.00011 24.9 1.5 40 70-117 16-55 (81)
122 2lbm_A Transcriptional regulat 63.3 11 0.00039 25.6 4.5 42 68-111 62-116 (142)
123 1x63_A Skeletal muscle LIM-pro 62.4 5.3 0.00018 23.8 2.5 39 70-116 16-56 (82)
124 2jtn_A LIM domain-binding prot 62.1 5.1 0.00017 28.1 2.6 47 68-116 86-132 (182)
125 1mm2_A MI2-beta; PHD, zinc fin 61.8 2.4 8.1E-05 24.5 0.7 44 67-112 7-56 (61)
126 2gmg_A Hypothetical protein PF 61.5 2.5 8.5E-05 27.5 0.8 28 85-117 71-98 (105)
127 1x68_A FHL5 protein; four-and- 61.5 4.4 0.00015 23.9 1.9 36 71-114 7-46 (76)
128 2cu8_A Cysteine-rich protein 2 60.9 4 0.00014 24.1 1.6 39 70-116 10-49 (76)
129 2dlo_A Thyroid receptor-intera 60.8 3.3 0.00011 24.8 1.3 37 70-114 16-52 (81)
130 2cur_A Skeletal muscle LIM-pro 58.7 3.5 0.00012 23.8 1.1 30 70-99 32-62 (69)
131 1x4k_A Skeletal muscle LIM-pro 58.3 4.6 0.00016 23.4 1.6 38 71-116 7-46 (72)
132 2jne_A Hypothetical protein YF 57.9 0.74 2.5E-05 29.5 -2.1 41 70-115 33-73 (101)
133 1zbd_B Rabphilin-3A; G protein 57.7 7.2 0.00025 26.3 2.6 30 68-97 54-88 (134)
134 2cuq_A Four and A half LIM dom 57.3 5.6 0.00019 23.6 1.9 36 71-114 17-52 (80)
135 1iml_A CRIP, cysteine rich int 55.4 4.5 0.00016 23.8 1.2 44 68-113 26-71 (76)
136 1x3h_A Leupaxin; paxillin fami 54.9 4.6 0.00016 24.0 1.2 37 71-115 17-53 (80)
137 2jrp_A Putative cytoplasmic pr 54.9 0.44 1.5E-05 29.6 -3.5 10 70-79 3-12 (81)
138 1wen_A Inhibitor of growth fam 54.8 18 0.00063 21.4 3.9 44 67-113 14-66 (71)
139 1wem_A Death associated transc 54.1 4.7 0.00016 24.2 1.1 44 69-113 16-71 (76)
140 2cup_A Skeletal muscle LIM-pro 53.8 3.9 0.00014 25.5 0.8 46 68-115 32-78 (101)
141 2d8y_A Eplin protein; LIM doma 53.4 16 0.00056 22.1 3.7 39 69-115 15-54 (91)
142 2ct7_A Ring finger protein 31; 52.9 1.3 4.6E-05 27.4 -1.6 29 71-99 27-61 (86)
143 2iyb_E Testin, TESS, TES; LIM 52.1 5.8 0.0002 22.6 1.3 38 71-116 4-45 (65)
144 2yql_A PHD finger protein 21A; 51.4 1.7 6E-05 24.5 -1.1 41 68-110 8-54 (56)
145 2ehe_A Four and A half LIM dom 50.9 9.4 0.00032 22.7 2.2 39 70-116 16-56 (82)
146 2egq_A FHL1 protein; LIM domai 50.4 6.5 0.00022 23.1 1.4 39 70-116 16-59 (77)
147 1fp0_A KAP-1 corepressor; PHD 49.4 6.6 0.00023 24.6 1.3 46 65-112 21-72 (88)
148 4g9i_A Hydrogenase maturation 49.2 8.7 0.0003 33.4 2.4 48 66-113 103-188 (772)
149 2e6r_A Jumonji/ARID domain-con 48.1 2.5 8.5E-05 26.6 -0.9 46 66-111 13-65 (92)
150 2l3k_A Rhombotin-2, linker, LI 46.8 7.9 0.00027 25.2 1.4 43 68-112 35-79 (123)
151 1we9_A PHD finger family prote 46.4 2.2 7.6E-05 24.7 -1.2 45 68-112 5-58 (64)
152 1wew_A DNA-binding family prot 45.9 9.5 0.00032 23.0 1.6 45 67-112 14-72 (78)
153 3o36_A Transcription intermedi 45.8 4.3 0.00015 28.6 -0.0 43 69-113 4-52 (184)
154 1g47_A Pinch protein; LIM doma 45.0 7.5 0.00026 22.8 1.0 40 69-116 11-52 (77)
155 1j2o_A FLIN2, fusion of rhombo 44.9 13 0.00046 23.7 2.3 35 68-102 29-66 (114)
156 2co8_A NEDD9 interacting prote 44.7 12 0.00041 22.4 1.9 42 69-118 15-57 (82)
157 1weu_A Inhibitor of growth fam 43.9 18 0.00063 22.6 2.7 45 67-113 34-86 (91)
158 1x61_A Thyroid receptor intera 43.6 24 0.00081 20.2 3.1 33 69-101 33-66 (72)
159 3f6q_B LIM and senescent cell 43.6 9.2 0.00031 21.8 1.2 40 69-116 11-52 (72)
160 2dj7_A Actin-binding LIM prote 43.4 15 0.0005 21.9 2.2 40 68-115 14-54 (80)
161 2eps_A POZ-, at HOOK-, and zin 43.3 25 0.00087 18.5 3.1 37 68-115 11-53 (54)
162 3lqh_A Histone-lysine N-methyl 43.3 4.6 0.00016 28.8 -0.2 44 70-113 3-64 (183)
163 3ttc_A HYPF, transcriptional r 42.3 13 0.00045 31.7 2.4 49 65-113 13-99 (657)
164 2ku3_A Bromodomain-containing 41.8 9.6 0.00033 22.7 1.1 46 66-111 13-65 (71)
165 3u5n_A E3 ubiquitin-protein li 41.3 6.8 0.00023 28.1 0.5 44 68-113 6-55 (207)
166 2puy_A PHD finger protein 21A; 41.2 3.8 0.00013 23.4 -0.7 41 69-111 5-51 (60)
167 3vth_A Hydrogenase maturation 40.8 21 0.00073 31.0 3.6 50 65-114 107-194 (761)
168 2zet_C Melanophilin; complex, 38.3 9.8 0.00034 26.3 0.9 43 68-111 67-116 (153)
169 2l4z_A DNA endonuclease RBBP8, 37.5 22 0.00074 23.2 2.5 38 69-114 61-99 (123)
170 3vhs_A ATPase wrnip1; zinc fin 37.0 11 0.00038 17.9 0.7 12 104-115 7-18 (29)
171 2ctu_A Zinc finger protein 483 36.3 11 0.00036 21.1 0.7 38 68-118 17-54 (73)
172 4ayb_P DNA-directed RNA polyme 35.9 7.7 0.00026 21.3 0.0 26 86-113 8-33 (48)
173 1erd_A Pheromone ER-2; NMR {Eu 35.8 7.3 0.00025 19.8 -0.1 15 85-99 10-24 (40)
174 1xwh_A Autoimmune regulator; P 35.7 5.1 0.00017 23.4 -0.8 43 68-112 7-55 (66)
175 2lv2_A Insulinoma-associated p 35.1 32 0.0011 20.7 2.8 41 67-118 26-71 (85)
176 3ql9_A Transcriptional regulat 34.9 39 0.0013 22.5 3.4 44 68-111 56-110 (129)
177 1wff_A Riken cDNA 2810002D23 p 34.6 18 0.00061 22.5 1.5 37 69-108 25-63 (85)
178 1l8d_A DNA double-strand break 34.3 14 0.00046 23.6 1.0 12 104-115 48-59 (112)
179 3o70_A PHD finger protein 13; 33.8 5.8 0.0002 23.4 -0.8 44 67-111 17-66 (68)
180 1a7i_A QCRP2 (LIM1); LIM domai 33.6 8.1 0.00028 23.0 -0.2 30 70-99 35-65 (81)
181 2pv0_B DNA (cytosine-5)-methyl 33.5 68 0.0023 25.5 5.1 28 86-113 112-149 (386)
182 3shb_A E3 ubiquitin-protein li 33.5 5.9 0.0002 24.1 -0.8 41 71-111 28-76 (77)
183 4gut_A Lysine-specific histone 33.4 18 0.00061 31.4 1.9 33 70-102 14-56 (776)
184 2yt5_A Metal-response element- 33.4 14 0.0005 21.1 1.0 46 68-113 5-62 (66)
185 3v43_A Histone acetyltransfera 33.3 8.6 0.00029 24.8 -0.1 41 71-111 63-111 (112)
186 1wfl_A Zinc finger protein 216 33.3 45 0.0016 20.0 3.2 26 69-94 25-51 (74)
187 1zfo_A LAsp-1; LIM domain, zin 32.6 17 0.00059 17.7 1.0 25 71-95 5-30 (31)
188 1loi_A Cyclic 3',5'-AMP specif 32.4 3 0.0001 19.3 -1.7 12 90-101 6-17 (26)
189 3pwf_A Rubrerythrin; non heme 32.0 18 0.0006 25.3 1.4 10 103-112 153-162 (170)
190 2ro1_A Transcription intermedi 31.5 11 0.00037 26.8 0.2 41 70-112 3-49 (189)
191 2d8v_A Zinc finger FYVE domain 30.9 21 0.00071 21.1 1.3 32 69-101 8-40 (67)
192 3uk3_C Zinc finger protein 217 30.4 21 0.0007 18.8 1.2 43 69-118 4-47 (57)
193 2kdx_A HYPA, hydrogenase/ureas 30.2 20 0.00068 23.3 1.3 11 103-113 89-100 (119)
194 2cot_A Zinc finger protein 435 30.0 62 0.0021 18.1 3.5 40 68-118 17-61 (77)
195 2ysm_A Myeloid/lymphoid or mix 29.4 5.5 0.00019 25.6 -1.6 41 71-111 56-103 (111)
196 4gzn_C ZFP-57, zinc finger pro 28.9 18 0.00063 20.3 0.9 39 69-118 4-47 (60)
197 3d00_A Tungsten formylmethanof 28.8 19 0.00063 25.7 1.0 26 67-97 161-186 (191)
198 2lcq_A Putative toxin VAPC6; P 28.2 10 0.00034 26.1 -0.5 10 104-113 149-158 (165)
199 2ee8_A Protein ODD-skipped-rel 28.0 96 0.0033 18.4 4.3 14 68-81 16-29 (106)
200 1b8t_A Protein (CRP1); LIM dom 27.9 55 0.0019 22.8 3.4 43 69-113 142-185 (192)
201 1x6e_A Zinc finger protein 24; 27.9 24 0.00081 19.8 1.3 40 68-118 13-57 (72)
202 2adr_A ADR1; transcription reg 27.8 28 0.00095 18.5 1.5 38 70-118 3-45 (60)
203 3asl_A E3 ubiquitin-protein li 27.7 12 0.00042 22.1 -0.1 41 71-111 20-68 (70)
204 2csh_A Zinc finger protein 297 27.6 67 0.0023 19.3 3.5 16 103-118 65-80 (110)
205 1lko_A Rubrerythrin all-iron(I 27.5 20 0.00068 25.4 1.0 9 104-112 172-180 (191)
206 2m0e_A Zinc finger and BTB dom 26.7 37 0.0013 14.3 1.7 15 104-118 3-17 (29)
207 1bbo_A Human enhancer-binding 26.6 26 0.0009 18.3 1.2 16 103-118 29-44 (57)
208 2vnf_A ING 4, P29ING4, inhibit 25.8 15 0.00052 20.9 0.1 41 68-111 9-58 (60)
209 2lce_A B-cell lymphoma 6 prote 25.2 35 0.0012 19.1 1.7 44 68-118 16-60 (74)
210 1x4w_A Hypothetical protein FL 25.2 31 0.0011 20.4 1.4 26 69-94 15-44 (67)
211 1x5w_A Zinc finger protein 64, 24.7 32 0.0011 19.0 1.4 40 68-118 8-52 (70)
212 2ri7_A Nucleosome-remodeling f 24.4 22 0.00074 24.5 0.7 44 68-112 7-59 (174)
213 1wg2_A Zinc finger (AN1-like) 24.4 66 0.0023 18.7 2.7 38 69-109 15-53 (64)
214 1ard_A Yeast transcription fac 24.3 35 0.0012 14.5 1.3 15 104-118 3-17 (29)
215 1wev_A Riken cDNA 1110020M19; 24.2 18 0.00061 22.3 0.2 44 68-111 15-71 (88)
216 3ask_A E3 ubiquitin-protein li 24.1 12 0.00042 27.5 -0.6 42 70-111 175-224 (226)
217 2e6s_A E3 ubiquitin-protein li 24.0 11 0.00038 22.8 -0.8 40 71-110 28-75 (77)
218 1yuz_A Nigerythrin; rubrythrin 23.9 25 0.00084 25.2 0.9 9 104-112 187-195 (202)
219 3c6w_A P28ING5, inhibitor of g 23.8 18 0.00063 20.5 0.2 43 68-111 8-57 (59)
220 1znf_A 31ST zinc finger from X 23.2 36 0.0012 14.2 1.2 14 104-117 2-15 (27)
221 2epr_A POZ-, at HOOK-, and zin 23.0 82 0.0028 15.7 3.5 15 68-82 11-25 (48)
222 1wep_A PHF8; structural genomi 22.8 64 0.0022 19.1 2.6 45 68-113 11-64 (79)
223 2ffw_A Midline-1; B-BOX, ring 22.0 40 0.0014 20.1 1.5 31 68-98 29-62 (78)
224 1klr_A Zinc finger Y-chromosom 21.7 50 0.0017 13.9 1.6 15 104-118 3-17 (30)
225 2epq_A POZ-, at HOOK-, and zin 21.5 58 0.002 15.9 2.0 13 69-81 10-22 (45)
226 3c5k_A HD6, histone deacetylas 21.4 29 0.001 22.4 0.8 26 69-94 24-49 (109)
227 1wfh_A Zinc finger (AN1-like) 21.4 84 0.0029 18.3 2.7 38 69-109 15-53 (64)
228 2jvx_A NF-kappa-B essential mo 21.4 24 0.00082 17.1 0.3 11 105-115 5-15 (28)
229 1paa_A Yeast transcription fac 21.0 47 0.0016 14.2 1.4 15 104-118 3-17 (30)
230 1wfp_A Zinc finger (AN1-like) 21.0 70 0.0024 19.2 2.4 38 69-109 25-63 (74)
231 2vrw_B P95VAV, VAV1, proto-onc 20.0 89 0.003 24.3 3.6 32 66-97 354-390 (406)
No 1
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.72 E-value=2.3e-18 Score=111.28 Aligned_cols=74 Identities=20% Similarity=0.167 Sum_probs=64.0
Q ss_pred cCCCcccccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCcCCCccccHHHHHHHHHHHHHHHHhccc
Q psy2479 64 RADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGILATTCIEKRLKAINKTFELIDQS 141 (156)
Q Consensus 64 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~~~~~~~~ 141 (156)
..+.+.+.||||+++|.+||+++|||+||+.||..|+....+||.|+.++....+ .+|..+.++++.|......
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l----~pn~~L~~~i~~~~~~~~~ 82 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESML----EPVPELKEQIQAWMREKQS 82 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGC----EECHHHHHHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhc----chHHHHHHHHHHHHHHhhh
Confidence 4567789999999999999999999999999999999888999999999988877 5566677888888765543
No 2
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.72 E-value=1.3e-18 Score=110.29 Aligned_cols=71 Identities=20% Similarity=0.349 Sum_probs=60.6
Q ss_pred CCCcccccccccccccccEEcccCCcchHHhHHHHhcC-CCCCcccccCCcCCCccccHHHHHHHHHHHHHHHHhc
Q psy2479 65 ADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDY-SSSCPLCKTSLADVGILATTCIEKRLKAINKTFELID 139 (156)
Q Consensus 65 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~~~~~~ 139 (156)
.+.+.+.|+||.+.+.+|+.++|||+||..||..|+.. ..+||.||.++....+ .+|..++++++.|....
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l----~~n~~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL----TPNYVLKSLIALWCESN 75 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCC----EECTTTHHHHHHHHHHS
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhC----ccCHHHHHHHHHHHHHc
Confidence 45678999999999999999999999999999999987 7899999999988777 44566677777776544
No 3
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.72 E-value=1.1e-17 Score=110.82 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=66.3
Q ss_pred ccCCCcccccccccccccccEEcccC-CcchHHhHHHHhcCCCCCcccccCCcCCCccccHHHHHHHHHHHHHHHHhccc
Q psy2479 63 TRADSSDFDCILCRSTIWKPVTTPCG-HSYCWMCLDRCLDYSSSCPLCKTSLADVGILATTCIEKRLKAINKTFELIDQS 141 (156)
Q Consensus 63 ~~~~~~~~~C~IC~~~~~~pv~~~Cg-H~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~~~~~~~~ 141 (156)
...+.+++.||||+++|.+||+++|| |+||+.||..|+....+||.||.++....+ .+|..++++++.|......
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L----~pn~~Lk~~I~~~~~~~~~ 91 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI----RPNTELKEKIQRWLAERKQ 91 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS----EECHHHHHHHHHHHHHSTT
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhc----eEcHHHHHHHHHHHHHcch
Confidence 34567889999999999999999999 999999999999888999999999998887 5567778888888776554
Q ss_pred cc
Q psy2479 142 ER 143 (156)
Q Consensus 142 ~~ 143 (156)
++
T Consensus 92 ~~ 93 (98)
T 1wgm_A 92 QS 93 (98)
T ss_dssp CS
T ss_pred hh
Confidence 43
No 4
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.71 E-value=4.8e-18 Score=112.99 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=65.8
Q ss_pred ccCCCcccccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCcCCCccccHHHHHHHHHHHHHHHHhcccc
Q psy2479 63 TRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGILATTCIEKRLKAINKTFELIDQSE 142 (156)
Q Consensus 63 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~~~~~~~~~ 142 (156)
...+.+.+.||||+++|.+||+++|||+||+.||..|+....+||.|+.++....+ .+|..+.++++.|......+
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L----~pn~~Lk~~I~~~~~~~~~~ 98 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESML----EPVPELKEQIQAWMREKQNS 98 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSS----EECHHHHHHHHHHHHTTTCC
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhc----eECHHHHHHHHHHHHHhhhc
Confidence 34567889999999999999999999999999999999988999999999998888 55677788888887665433
No 5
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=109.01 Aligned_cols=76 Identities=22% Similarity=0.509 Sum_probs=61.8
Q ss_pred ccCCCcccccccccccccccEEcc-cCCcchHHhHHHHhcC--CCCCcccccCCc-CCCccccHHHHHHHHHHHHHHHHh
Q psy2479 63 TRADSSDFDCILCRSTIWKPVTTP-CGHSYCWMCLDRCLDY--SSSCPLCKTSLA-DVGILATTCIEKRLKAINKTFELI 138 (156)
Q Consensus 63 ~~~~~~~~~C~IC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~-~~~~~~~~~~n~~l~~l~~~~~~~ 138 (156)
...+.+.+.|+||.+.|.+|++++ |||+||..||..|+.. ...||.||..+. ...+ .+|..+.++++.+...
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~----~~n~~l~~~i~~~~~~ 82 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL----IANKFLRQAVNNFKNE 82 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSC----EECHHHHHHHHHHHHH
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCcccc----CcCHHHHHHHHHHHHH
Confidence 345677899999999999999999 9999999999999964 469999999974 4445 4577788888888776
Q ss_pred cccc
Q psy2479 139 DQSE 142 (156)
Q Consensus 139 ~~~~ 142 (156)
.+..
T Consensus 83 ~~~~ 86 (92)
T 3ztg_A 83 TGYT 86 (92)
T ss_dssp HTCC
T ss_pred HhHH
Confidence 5443
No 6
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.66 E-value=2.7e-17 Score=108.87 Aligned_cols=75 Identities=19% Similarity=0.540 Sum_probs=62.7
Q ss_pred ccCCCcccccccccccccccEEc-ccCCcchHHhHHHHhcCCCCCcccccCCcCCCccccHHHHHHHHHHHHHHHHhccc
Q psy2479 63 TRADSSDFDCILCRSTIWKPVTT-PCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGILATTCIEKRLKAINKTFELIDQS 141 (156)
Q Consensus 63 ~~~~~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~~~~~~~~ 141 (156)
...+.+.+.|+||.+.+.+|+.+ +|||+||..|+..|+.....||.||..+....+ ..|..+.++++.+......
T Consensus 16 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l----~~n~~l~~~i~~~~~~~~~ 91 (99)
T 2y43_A 16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDL----KNNRILDELVKSLNFARNH 91 (99)
T ss_dssp GHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC----EECHHHHHHHHHHHHHHHT
T ss_pred HHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhC----CcCHHHHHHHHHHHHHHHH
Confidence 34455678999999999999988 899999999999999988999999999987666 4566777777777765543
No 7
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.66 E-value=3.2e-17 Score=112.79 Aligned_cols=70 Identities=29% Similarity=0.667 Sum_probs=58.1
Q ss_pred cCCCcccccccccccccccEEcccCCcchHHhHHHHhcC-CCCCcccccCCcC-CCccccHHHHHHHHHHHHHHHH
Q psy2479 64 RADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDY-SSSCPLCKTSLAD-VGILATTCIEKRLKAINKTFEL 137 (156)
Q Consensus 64 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~-~~~~~~~~~n~~l~~l~~~~~~ 137 (156)
..+.+.+.|+||.+.+.+|++++|||+||..||..|+.. ...||.||.++.. ..+ .+|..+.++++.+..
T Consensus 47 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~----~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 47 SKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAM----QVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCC----CCCHHHHHHHHHHST
T ss_pred HhCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCC----CCCHHHHHHHHHHcc
Confidence 445677899999999999999999999999999999975 4599999999987 444 456777777776643
No 8
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.65 E-value=1.5e-17 Score=110.54 Aligned_cols=74 Identities=16% Similarity=0.496 Sum_probs=59.7
Q ss_pred cCCCcccccccccccccccEE-cccCCcchHHhHHHHhcCC-CCCcccccCCcCCCccccHHHHHHHHHHHHHHHHhccc
Q psy2479 64 RADSSDFDCILCRSTIWKPVT-TPCGHSYCWMCLDRCLDYS-SSCPLCKTSLADVGILATTCIEKRLKAINKTFELIDQS 141 (156)
Q Consensus 64 ~~~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~~~~~~~~ 141 (156)
..+.+.+.|+||++.+.+|+. ++|||+||..||..|+... ..||.||.++....+. .++.+..+.+.+..+...
T Consensus 17 ~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~----~~~~~~~i~~~~~~l~~~ 92 (100)
T 3lrq_A 17 ESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV----NCRWAEEVTQQLDTLQLC 92 (100)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE----ECTTHHHHHHHHHHHCC-
T ss_pred ccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhH----hhHHHHHHHHHHHHHHHH
Confidence 445678899999999999999 9999999999999999876 7999999999887773 345555666666555443
No 9
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.65 E-value=3.4e-17 Score=114.72 Aligned_cols=68 Identities=19% Similarity=0.644 Sum_probs=55.0
Q ss_pred CCcccccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCcCCCccccHHHHHHHHHHHHHH
Q psy2479 66 DSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGILATTCIEKRLKAINKTF 135 (156)
Q Consensus 66 ~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~~ 135 (156)
+.+++.|+||.+.+.+|++++|||+||..||..|+.....||.||.++..... +..++..+..++..+
T Consensus 50 ~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~--~~~~~~~i~~~~~~l 117 (138)
T 4ayc_A 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTY--SLVLDNCINKMVNNL 117 (138)
T ss_dssp HHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEEE--CHHHHHHHHHHHTTS
T ss_pred ccccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCCC--ccchhHHHHHHHHHh
Confidence 44567899999999999999999999999999999999999999999976543 334555555554433
No 10
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.62 E-value=1.4e-16 Score=107.04 Aligned_cols=73 Identities=26% Similarity=0.529 Sum_probs=58.4
Q ss_pred cCCCcccccccccccccccEEc-ccCCcchHHhHHHHhcCCCCCcccccCCcCCCccccHHHHHHHHHHHHHHH
Q psy2479 64 RADSSDFDCILCRSTIWKPVTT-PCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGILATTCIEKRLKAINKTFE 136 (156)
Q Consensus 64 ~~~~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~~~ 136 (156)
..+.+.+.|+||.+.+.+|+.+ +|||+||..|+..|+.....||.||..+.....+.+...|..+.++++.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 10 TELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred hccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 3456789999999999999997 999999999999999988999999999987632222244556666666653
No 11
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=4.6e-16 Score=97.13 Aligned_cols=57 Identities=25% Similarity=0.585 Sum_probs=51.3
Q ss_pred ccCCCcccccccccccccccEEc-ccCCcchHHhHHHHhcCCCCCcccccCCcCCCcc
Q psy2479 63 TRADSSDFDCILCRSTIWKPVTT-PCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGIL 119 (156)
Q Consensus 63 ~~~~~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 119 (156)
.+.+.+.+.|+||++.+.+|+.+ +|||+||..||..|+.....||+||..+...+.+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence 45567789999999999999987 9999999999999998889999999999877763
No 12
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=5.9e-16 Score=95.03 Aligned_cols=56 Identities=25% Similarity=0.677 Sum_probs=49.1
Q ss_pred ccCCCcccccccccccccccEEcccCCcchHHhHHHHhc-CCCCCcccccCCcCCCc
Q psy2479 63 TRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLD-YSSSCPLCKTSLADVGI 118 (156)
Q Consensus 63 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~ 118 (156)
...+.+.+.|+||++.+.+|+.++|||+||..|+..|+. ....||.||..+....+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 445667899999999999999999999999999999994 46899999999877654
No 13
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.61 E-value=4.8e-16 Score=97.64 Aligned_cols=56 Identities=27% Similarity=0.672 Sum_probs=48.9
Q ss_pred ccCCCcccccccccccccccEEcc-cCCcchHHhHHHHhcCC--CCCcccccCCcCCCc
Q psy2479 63 TRADSSDFDCILCRSTIWKPVTTP-CGHSYCWMCLDRCLDYS--SSCPLCKTSLADVGI 118 (156)
Q Consensus 63 ~~~~~~~~~C~IC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~~~ 118 (156)
...+.+.+.|+||++.+.+|+.++ |||+||..||..|+... ..||.||..+...+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 456677899999999999999999 99999999999999764 799999998765544
No 14
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.60 E-value=1.8e-17 Score=105.06 Aligned_cols=56 Identities=27% Similarity=0.631 Sum_probs=49.8
Q ss_pred ccCCCcccccccccccccccEEcccCCcchHHhHHHHhcC-------CCCCcccccCCcCCCc
Q psy2479 63 TRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDY-------SSSCPLCKTSLADVGI 118 (156)
Q Consensus 63 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~-------~~~CP~Cr~~~~~~~~ 118 (156)
.+.+.+.+.|+||++.+.+|+.++|||+||..|+..|+.. ...||.||..+....+
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 68 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL 68 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGG
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhC
Confidence 4456678999999999999999999999999999999976 6799999999987666
No 15
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4e-16 Score=102.52 Aligned_cols=71 Identities=23% Similarity=0.497 Sum_probs=58.6
Q ss_pred CCcccccccccccccccEEcc-cCCcchHHhHHHHhcCC------CCCcc--cccC-CcCCCccccHHHHHHHHHHHHHH
Q psy2479 66 DSSDFDCILCRSTIWKPVTTP-CGHSYCWMCLDRCLDYS------SSCPL--CKTS-LADVGILATTCIEKRLKAINKTF 135 (156)
Q Consensus 66 ~~~~~~C~IC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~------~~CP~--Cr~~-~~~~~~~~~~~~n~~l~~l~~~~ 135 (156)
..+.+.||||+++|.+||+++ |||+||+.||..|+... .+||. |+.. +....+ .+|..|.++++.+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L----~pn~~L~~~I~~~ 79 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDL----IQDEALRRAIENH 79 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGE----EECHHHHHHHHHH
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhC----cCCHHHHHHHHHH
Confidence 356789999999999999996 99999999999999753 59999 8877 777777 5566777888888
Q ss_pred HHhcc
Q psy2479 136 ELIDQ 140 (156)
Q Consensus 136 ~~~~~ 140 (156)
.....
T Consensus 80 ~~~~~ 84 (94)
T 2yu4_A 80 NKKRH 84 (94)
T ss_dssp HTTCC
T ss_pred HHHhc
Confidence 76554
No 16
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.59 E-value=4.7e-16 Score=110.47 Aligned_cols=70 Identities=29% Similarity=0.600 Sum_probs=58.8
Q ss_pred cCCCcccccccccccccccEEcccCCcchHHhHHHHhcCC-CCCcccccCCcCC-CccccHHHHHHHHHHHHHHHH
Q psy2479 64 RADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYS-SSCPLCKTSLADV-GILATTCIEKRLKAINKTFEL 137 (156)
Q Consensus 64 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~-~~~~~~~~n~~l~~l~~~~~~ 137 (156)
..+.+.+.|+||.+.+.+|++++|||+||..||..|+... ..||.||..+... .+ .+|..+.++++.+..
T Consensus 73 ~~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l----~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 73 KKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIM----IPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCC----CBCHHHHHHHHHHST
T ss_pred HhCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCC----CCCHHHHHHHHHHhh
Confidence 3455678999999999999999999999999999999864 5899999999877 44 456777777777654
No 17
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.8e-15 Score=93.54 Aligned_cols=56 Identities=34% Similarity=0.721 Sum_probs=48.8
Q ss_pred ccCCCcccccccccccccccEEcccCCcchHHhHHHHhc---CCCCCcccccCCcCCCc
Q psy2479 63 TRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLD---YSSSCPLCKTSLADVGI 118 (156)
Q Consensus 63 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~~~~~~ 118 (156)
...+.+.+.|+||++.+.+|+.++|||+||..|+..|+. ....||+||..+....+
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 455677899999999999999999999999999999996 36799999999876543
No 18
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.3e-15 Score=95.94 Aligned_cols=51 Identities=25% Similarity=0.698 Sum_probs=46.8
Q ss_pred cCCCcccccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCc
Q psy2479 64 RADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLA 114 (156)
Q Consensus 64 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 114 (156)
......+.|+||++.+.+|++++|||+||..|+..|+.....||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 345567899999999999999999999999999999988899999999996
No 19
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.58 E-value=7.8e-17 Score=109.38 Aligned_cols=69 Identities=25% Similarity=0.581 Sum_probs=54.8
Q ss_pred cCCCcccccccccccccccEEcccCCcchHHhHHHHhcC-CCCCcccccCCcC-------CCccccHHHHHHHHHHHHHH
Q psy2479 64 RADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDY-SSSCPLCKTSLAD-------VGILATTCIEKRLKAINKTF 135 (156)
Q Consensus 64 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~-------~~~~~~~~~n~~l~~l~~~~ 135 (156)
....+++.|+||.+.+.+|++++|||+||..|+..|+.. ...||.||..+.. ... .+|..+..++..+
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~----~~n~~l~~~i~~~ 85 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNS----LVNVELWTIIQKH 85 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTC----CBCHHHHHHHHHH
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccc----hhhHHHHHHHHHH
Confidence 345668999999999999999999999999999999976 6799999999864 233 3355555555555
Q ss_pred H
Q psy2479 136 E 136 (156)
Q Consensus 136 ~ 136 (156)
.
T Consensus 86 ~ 86 (115)
T 3l11_A 86 Y 86 (115)
T ss_dssp S
T ss_pred C
Confidence 3
No 20
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.56 E-value=1.6e-15 Score=103.47 Aligned_cols=66 Identities=21% Similarity=0.617 Sum_probs=55.6
Q ss_pred cccCCCcccccccccccccccEEcccCCcchHHhHHHHhcCC-CCCcccccCCcCCCccccHHHHHH
Q psy2479 62 LTRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYS-SSCPLCKTSLADVGILATTCIEKR 127 (156)
Q Consensus 62 ~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~~~n~~ 127 (156)
....+.+.+.|+||.+.+.+|+.++|||+||..|+..|+... ..||.||.++....++++..+.+.
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~ 77 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKRE 77 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHH
T ss_pred hccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHH
Confidence 345677889999999999999999999999999999999775 499999999988877555544433
No 21
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.1e-15 Score=93.87 Aligned_cols=53 Identities=25% Similarity=0.695 Sum_probs=47.1
Q ss_pred CCCcccccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCcCCC
Q psy2479 65 ADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVG 117 (156)
Q Consensus 65 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 117 (156)
...+.+.|+||++.+.+|+.++|||+||..|+..|+.....||+||..+....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDF 63 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence 34557889999999999999999999999999999998899999999886543
No 22
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.1e-15 Score=92.92 Aligned_cols=53 Identities=28% Similarity=0.711 Sum_probs=47.0
Q ss_pred ccCCCccccccccccccccc-------EEcccCCcchHHhHHHHhcCCCCCcccccCCcC
Q psy2479 63 TRADSSDFDCILCRSTIWKP-------VTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLAD 115 (156)
Q Consensus 63 ~~~~~~~~~C~IC~~~~~~p-------v~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 115 (156)
.....+...|+||++.+.++ +.++|||.||..|+..|+.....||+||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34456678999999999987 889999999999999999888999999998864
No 23
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.55 E-value=1.4e-15 Score=102.34 Aligned_cols=72 Identities=26% Similarity=0.602 Sum_probs=57.2
Q ss_pred CCcccccccccccccccEEcccCCcchHHhHHHHhcCC---CCCcccccCCcCCCccccHHHHHHHHHHHHHHHH
Q psy2479 66 DSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYS---SSCPLCKTSLADVGILATTCIEKRLKAINKTFEL 137 (156)
Q Consensus 66 ~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~~~~ 137 (156)
+.+.+.|+||.+.+.+|+.++|||+||..|+..|+... ..||.||..+....+..+..+...+..+...+..
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~~~~ 92 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKIICA 92 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHHHHH
T ss_pred ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHHHHH
Confidence 34467899999999999999999999999999999764 4899999999887775555555555555554443
No 24
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.55 E-value=7.5e-16 Score=104.92 Aligned_cols=69 Identities=22% Similarity=0.561 Sum_probs=57.2
Q ss_pred CCCcccccccccccccccEEc-ccCCcchHHhHHHHhcCCCCCcccccCCcCCCccccHHHHHHHHHHHHHHHHhc
Q psy2479 65 ADSSDFDCILCRSTIWKPVTT-PCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGILATTCIEKRLKAINKTFELID 139 (156)
Q Consensus 65 ~~~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~~~~~~ 139 (156)
.+.+.+.|+||++.+.+|+++ +|||+||..||..|+. ..||.||..+....+ .+|..+.++++.+....
T Consensus 18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~----~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDL----KINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSC----CCCHHHHHHHHHHHHHH
T ss_pred hchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccc----cccHHHHHHHHHHHHHH
Confidence 345678999999999999999 9999999999999987 889999999977666 44666667766665544
No 25
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=4.9e-15 Score=94.71 Aligned_cols=57 Identities=21% Similarity=0.623 Sum_probs=50.4
Q ss_pred ccCCCcccccccccccccccEEcccCCcchHHhHHHHhcC------CCCCcccccCCcCCCcc
Q psy2479 63 TRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDY------SSSCPLCKTSLADVGIL 119 (156)
Q Consensus 63 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~ 119 (156)
...+.+.+.|+||.+.+.+|+.++|||+||..|+..|+.. ...||.||..+....+.
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLK 75 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCE
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCC
Confidence 3456678899999999999999999999999999999976 67999999999877663
No 26
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.55 E-value=2.3e-15 Score=109.43 Aligned_cols=72 Identities=15% Similarity=0.186 Sum_probs=61.6
Q ss_pred cCCCcccccccccccccccEEcccCCcchHHhHHHHhcC-CCCCcccccCCcCCCccccHHHHHHHHHHHHHHHHhc
Q psy2479 64 RADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDY-SSSCPLCKTSLADVGILATTCIEKRLKAINKTFELID 139 (156)
Q Consensus 64 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~~~~~~ 139 (156)
..+.+.+.||||+++|.+||+++|||+||+.||..|+.. ..+||.|+.++....+ .+|..+.++++.|....
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L----~pN~~Lk~~Ie~~~~~~ 173 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQL----IPNLAMKEVIDAFIQEN 173 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC----EECHHHHHHHHHHHHHC
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhC----cchHHHHHHHHHHHHHC
Confidence 456788999999999999999999999999999999976 3579999999988887 55667788888886544
No 27
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.55 E-value=2e-15 Score=108.51 Aligned_cols=71 Identities=24% Similarity=0.502 Sum_probs=56.0
Q ss_pred ccCCCcccccccccccccccEEc-ccCCcchHHhHHHHhcC-CCCCcccccCCcCCCccccHHHHHHHHHHHHHHH
Q psy2479 63 TRADSSDFDCILCRSTIWKPVTT-PCGHSYCWMCLDRCLDY-SSSCPLCKTSLADVGILATTCIEKRLKAINKTFE 136 (156)
Q Consensus 63 ~~~~~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~~~ 136 (156)
...+.+.+.|+||.+.+.+|+.+ +|||+||..|+..|+.. ...||.||..+.....+ .+|..+.+++..+.
T Consensus 48 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l---~~~~~l~~~i~~~~ 120 (165)
T 2ckl_B 48 PRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSL---RPDPNFDALISKIY 120 (165)
T ss_dssp --CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGE---EECHHHHHHHHHHC
T ss_pred hhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccC---CcCHHHHHHHHHHH
Confidence 34566788999999999999987 99999999999999987 78999999999654432 34555666666653
No 28
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.55 E-value=1.8e-15 Score=116.34 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=60.9
Q ss_pred cCCCcccccccccccccccEEcccCCcchHHhHHHHhcC-CCCCcccccCCcCCCccccHHHHHHHHHHHHHHHHhc
Q psy2479 64 RADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDY-SSSCPLCKTSLADVGILATTCIEKRLKAINKTFELID 139 (156)
Q Consensus 64 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~~~~~~ 139 (156)
......+.||||.++|.+||+++|||+||+.||..|+.. ..+||.||.++....+ .+|..+.++++.|....
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l----~~n~~l~~~i~~~~~~~ 275 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQL----IPNLAMKEVIDAFISEN 275 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGC----EECHHHHHHHHHHHTTC
T ss_pred CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcC----cccHHHHHHHHHHHHHC
Confidence 345678999999999999999999999999999999976 4559999999988887 55677778888887543
No 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=6.5e-15 Score=94.11 Aligned_cols=57 Identities=30% Similarity=0.679 Sum_probs=50.5
Q ss_pred ccCCCcccccccccccccccEEcccCCcchHHhHHHHhcC------CCCCcccccCCcCCCcc
Q psy2479 63 TRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDY------SSSCPLCKTSLADVGIL 119 (156)
Q Consensus 63 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~ 119 (156)
...+.+.+.|+||.+.+.+|+.++|||+||..|+..|+.. ...||.||..+....+.
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC
Confidence 3456678999999999999999999999999999999976 78999999999876663
No 30
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.53 E-value=3.3e-15 Score=92.64 Aligned_cols=53 Identities=28% Similarity=0.714 Sum_probs=47.8
Q ss_pred CCccccccccccccccc-------EEcccCCcchHHhHHHHhcCCCCCcccccCCcCCCc
Q psy2479 66 DSSDFDCILCRSTIWKP-------VTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGI 118 (156)
Q Consensus 66 ~~~~~~C~IC~~~~~~p-------v~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 118 (156)
..+...|+||++.+.+| +.++|||+||..|+..|+.....||.||..+....+
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 34568899999999988 889999999999999999988999999999987665
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.4e-14 Score=88.01 Aligned_cols=47 Identities=32% Similarity=0.775 Sum_probs=42.3
Q ss_pred ccCCCcccccccccccccccEEcccCCcchHHhHHHHhc---CCCCCccc
Q psy2479 63 TRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLD---YSSSCPLC 109 (156)
Q Consensus 63 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~---~~~~CP~C 109 (156)
.+.+.+.+.|+||++.+.+|+.++|||+||..||..|+. ....||.|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 455677899999999999999999999999999999997 45789998
No 32
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.2e-14 Score=93.65 Aligned_cols=55 Identities=27% Similarity=0.633 Sum_probs=48.0
Q ss_pred ccCCCcccccccccccccc----cEEcccCCcchHHhHHHHhcCC---CCCcccccCCcCCC
Q psy2479 63 TRADSSDFDCILCRSTIWK----PVTTPCGHSYCWMCLDRCLDYS---SSCPLCKTSLADVG 117 (156)
Q Consensus 63 ~~~~~~~~~C~IC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~---~~CP~Cr~~~~~~~ 117 (156)
.+.+.+.+.|+||++.+.+ |+.++|||+||..|+..|+... ..||.||..+....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 4456678899999999999 9999999999999999999764 89999999886554
No 33
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.49 E-value=1.9e-14 Score=90.94 Aligned_cols=56 Identities=25% Similarity=0.564 Sum_probs=48.1
Q ss_pred cCCCccccccccccccccc---EEcccCCcchHHhHHHHhcCCCCCcccccCCcCCCcc
Q psy2479 64 RADSSDFDCILCRSTIWKP---VTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGIL 119 (156)
Q Consensus 64 ~~~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 119 (156)
........|+||++.|.++ +.++|||.||..||..|+.....||+||..+......
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence 3455678999999999866 4579999999999999999889999999999877663
No 34
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.49 E-value=8.4e-15 Score=88.88 Aligned_cols=51 Identities=27% Similarity=0.718 Sum_probs=46.1
Q ss_pred ccccccccccccccc-------EEcccCCcchHHhHHHHhcCCCCCcccccCCcCCCc
Q psy2479 68 SDFDCILCRSTIWKP-------VTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGI 118 (156)
Q Consensus 68 ~~~~C~IC~~~~~~p-------v~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 118 (156)
+.+.|+||++.+.+| +.++|||.||..|+..|+.....||.||..+...++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 357899999999987 788999999999999999989999999999987665
No 35
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-14 Score=90.13 Aligned_cols=55 Identities=24% Similarity=0.712 Sum_probs=48.4
Q ss_pred ccCCCcccccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCcCCCc
Q psy2479 63 TRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGI 118 (156)
Q Consensus 63 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 118 (156)
.....+...|+||++.+.+ +.++|||.||..|+..|+.....||+||..+.....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 3455667899999999999 899999999999999999989999999999876553
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.2e-14 Score=84.74 Aligned_cols=47 Identities=28% Similarity=0.779 Sum_probs=41.2
Q ss_pred ccCCCcccccccccccccccEEcccCCcchHHhHHHHhc---CCCCCccc
Q psy2479 63 TRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLD---YSSSCPLC 109 (156)
Q Consensus 63 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~---~~~~CP~C 109 (156)
.+.+.+.+.|+||++.+.+|+.++|||+||..|+..|+. ....||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 445667889999999999999999999999999999954 46899988
No 37
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.47 E-value=1.2e-14 Score=98.62 Aligned_cols=56 Identities=29% Similarity=0.714 Sum_probs=49.6
Q ss_pred cCCCcccccccccccccccEEcccCCcchHHhHHHHhcC-CCCCcccccCCcCCCcc
Q psy2479 64 RADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDY-SSSCPLCKTSLADVGIL 119 (156)
Q Consensus 64 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~ 119 (156)
..+.+.+.|+||.+.+.+|+.++|||+||..|+..|+.. ...||.||.++....+.
T Consensus 18 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 18 AHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE 74 (116)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB
T ss_pred HhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcc
Confidence 345567899999999999999999999999999999986 68999999999876653
No 38
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.47 E-value=2.7e-14 Score=84.25 Aligned_cols=48 Identities=29% Similarity=0.772 Sum_probs=42.7
Q ss_pred Ccccccccccccccc---cEEcc-cCCcchHHhHHHHhcCCCCCcccccCCc
Q psy2479 67 SSDFDCILCRSTIWK---PVTTP-CGHSYCWMCLDRCLDYSSSCPLCKTSLA 114 (156)
Q Consensus 67 ~~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 114 (156)
.+...|+||++.+.+ ++.++ |||.||..|+.+|+....+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 456789999999987 67787 9999999999999999999999998764
No 39
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=4.9e-14 Score=86.95 Aligned_cols=53 Identities=23% Similarity=0.606 Sum_probs=44.9
Q ss_pred CCCcccccccccccccc---cEEcccCCcchHHhHHHHhcCCCCCcccccCCcCCC
Q psy2479 65 ADSSDFDCILCRSTIWK---PVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVG 117 (156)
Q Consensus 65 ~~~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 117 (156)
.......|+||++.+.. ++.++|||.||..|+..|+....+||+||..+....
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 34556789999998853 477899999999999999998899999999986644
No 40
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.46 E-value=1.6e-14 Score=101.46 Aligned_cols=51 Identities=27% Similarity=0.722 Sum_probs=45.8
Q ss_pred cCCCcccccccccccccccEEcccCCcchHHhHHHHhcCC-CCCcccccCCc
Q psy2479 64 RADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYS-SSCPLCKTSLA 114 (156)
Q Consensus 64 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~ 114 (156)
..+.+.+.|+||.+.+.+|+.++|||+||..||..|+... ..||.||.++.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4567889999999999999999999999999999999765 59999999753
No 41
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.45 E-value=5.9e-14 Score=85.69 Aligned_cols=51 Identities=29% Similarity=0.725 Sum_probs=44.1
Q ss_pred cccccccccc-ccccc----EEcccCCcchHHhHHHHhcC-CCCCcccccCCcCCCc
Q psy2479 68 SDFDCILCRS-TIWKP----VTTPCGHSYCWMCLDRCLDY-SSSCPLCKTSLADVGI 118 (156)
Q Consensus 68 ~~~~C~IC~~-~~~~p----v~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 118 (156)
++..|+||++ .+.+| +.++|||+||..|+..|+.. ...||.||.++....+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 3578999999 89998 56899999999999999754 5789999999987665
No 42
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.45 E-value=3.4e-14 Score=102.47 Aligned_cols=65 Identities=22% Similarity=0.620 Sum_probs=55.1
Q ss_pred cccCCCcccccccccccccccEEcccCCcchHHhHHHHhcC-CCCCcccccCCcCCCccccHHHHH
Q psy2479 62 LTRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDY-SSSCPLCKTSLADVGILATTCIEK 126 (156)
Q Consensus 62 ~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~n~ 126 (156)
....+.+.+.|+||.+.+.+|+.++|||+||..|+..|+.. ...||.||..+....++++..+.+
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~ 76 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKR 76 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHH
T ss_pred hccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHH
Confidence 34567788999999999999999999999999999999976 459999999998887765544433
No 43
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=7.2e-14 Score=87.67 Aligned_cols=52 Identities=23% Similarity=0.633 Sum_probs=45.4
Q ss_pred CCCccccccccccccccc---EEcccCCcchHHhHHHHhcCCCCCcccccCCcCC
Q psy2479 65 ADSSDFDCILCRSTIWKP---VTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADV 116 (156)
Q Consensus 65 ~~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 116 (156)
...+...|+||++.+..+ +.++|||.||..|+..|+....+||+||..+...
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 345668899999999887 6789999999999999999889999999988653
No 44
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.43 E-value=4.6e-14 Score=83.20 Aligned_cols=47 Identities=28% Similarity=0.657 Sum_probs=42.0
Q ss_pred cccccccccccccc----cEEcccCCcchHHhHHHHhcCCCCCcccccCCc
Q psy2479 68 SDFDCILCRSTIWK----PVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLA 114 (156)
Q Consensus 68 ~~~~C~IC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 114 (156)
+...|+||++.+.+ ++.++|||.||..|+..|+.....||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 35689999999866 678899999999999999988899999999874
No 45
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.42 E-value=8.1e-14 Score=90.79 Aligned_cols=50 Identities=26% Similarity=0.617 Sum_probs=44.4
Q ss_pred CCcccccccccccccc---cEEcccCCcchHHhHHHHhcCCCCCcccccCCcC
Q psy2479 66 DSSDFDCILCRSTIWK---PVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLAD 115 (156)
Q Consensus 66 ~~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 115 (156)
..+...|+||++.+.. ++.++|||.||..||..|+....+||+||..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 3456789999999887 6778999999999999999999999999998864
No 46
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=6.9e-14 Score=87.44 Aligned_cols=55 Identities=22% Similarity=0.515 Sum_probs=46.4
Q ss_pred cCCCcccccccccccccccE---EcccCCcchHHhHHHHhcCCCCCcccccCCcCCCc
Q psy2479 64 RADSSDFDCILCRSTIWKPV---TTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGI 118 (156)
Q Consensus 64 ~~~~~~~~C~IC~~~~~~pv---~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 118 (156)
........|+||++.+.++. .++|||.||..|+..|+.....||+||..+.....
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 34556789999999998763 34999999999999999988899999999876544
No 47
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.42 E-value=5e-14 Score=86.64 Aligned_cols=48 Identities=27% Similarity=0.795 Sum_probs=43.4
Q ss_pred ccccccccccccccc-EEcccCCcchHHhHHHHhcCCCCCcccccCCcC
Q psy2479 68 SDFDCILCRSTIWKP-VTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLAD 115 (156)
Q Consensus 68 ~~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 115 (156)
....|+||++.+.+| +.++|||.||..|+..|+....+||.||..+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 356899999999997 788999999999999999888999999998864
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.38 E-value=1.5e-13 Score=94.54 Aligned_cols=52 Identities=29% Similarity=0.733 Sum_probs=47.5
Q ss_pred Cccccccccccccccc-------EEcccCCcchHHhHHHHhcCCCCCcccccCCcCCCc
Q psy2479 67 SSDFDCILCRSTIWKP-------VTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGI 118 (156)
Q Consensus 67 ~~~~~C~IC~~~~~~p-------v~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 118 (156)
.+.+.|+||++.+.+| +.++|||+||..||..|+....+||.||..+.....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 3568999999999998 899999999999999999999999999999977665
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.37 E-value=8.7e-14 Score=82.71 Aligned_cols=48 Identities=25% Similarity=0.579 Sum_probs=41.4
Q ss_pred CcccccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCcCCC
Q psy2479 67 SSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVG 117 (156)
Q Consensus 67 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 117 (156)
.+.+.|+||++.+.+|+.++|||+||..|+.. ....||.||..+....
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc---CCCCCCcCCcEeecCC
Confidence 35688999999999999999999999999876 3578999999886543
No 50
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.37 E-value=1.3e-13 Score=105.19 Aligned_cols=70 Identities=13% Similarity=0.311 Sum_probs=57.4
Q ss_pred cCCCcccccccccccccccEEc-ccCCcchHHhHHHHhcC--CCCCcc--cccCCcCCCccccHHHHHHHHHHHHHHHH
Q psy2479 64 RADSSDFDCILCRSTIWKPVTT-PCGHSYCWMCLDRCLDY--SSSCPL--CKTSLADVGILATTCIEKRLKAINKTFEL 137 (156)
Q Consensus 64 ~~~~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~--~~~CP~--Cr~~~~~~~~~~~~~~n~~l~~l~~~~~~ 137 (156)
......+.||||+.+|.+||++ .|||+||+.||..|+.. ...||. |+..+...++. +|..|.++++.++.
T Consensus 176 ~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~----pN~~L~~lve~~k~ 250 (267)
T 3htk_C 176 EGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFV----RDPIMELRCKIAKM 250 (267)
T ss_dssp CSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEE----ECHHHHHHHHHHHH
T ss_pred cCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCC----cCHHHHHHHHHHHH
Confidence 3456789999999999999985 99999999999999976 368999 99999888884 45556666666544
No 51
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.34 E-value=6.2e-13 Score=89.75 Aligned_cols=49 Identities=33% Similarity=0.667 Sum_probs=41.4
Q ss_pred ccccccccccccccE------------------EcccCCcchHHhHHHHh-----cCCCCCcccccCCcCCC
Q psy2479 69 DFDCILCRSTIWKPV------------------TTPCGHSYCWMCLDRCL-----DYSSSCPLCKTSLADVG 117 (156)
Q Consensus 69 ~~~C~IC~~~~~~pv------------------~~~CgH~fC~~Ci~~~~-----~~~~~CP~Cr~~~~~~~ 117 (156)
+..|+||++.|.++. .++|||.||..||..|+ ....+||+||..+....
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 458999999997654 68999999999999999 44679999999886543
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.33 E-value=1.1e-12 Score=83.05 Aligned_cols=54 Identities=24% Similarity=0.570 Sum_probs=44.1
Q ss_pred CCCccccccccccccc--ccEEcc--cCCcchHHhHHHHhcC-CCCCcccccCCcCCCc
Q psy2479 65 ADSSDFDCILCRSTIW--KPVTTP--CGHSYCWMCLDRCLDY-SSSCPLCKTSLADVGI 118 (156)
Q Consensus 65 ~~~~~~~C~IC~~~~~--~pv~~~--CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 118 (156)
.+.+++.||||++.+. +++++| |||.||..|+..++.. ...||.||.++.....
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 4567789999999884 445555 9999999999998754 6899999999977655
No 53
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=9.8e-13 Score=83.85 Aligned_cols=49 Identities=24% Similarity=0.587 Sum_probs=41.0
Q ss_pred cccccccccccccc--------------cEEc-ccCCcchHHhHHHHhcCCCCCcccccCCcCC
Q psy2479 68 SDFDCILCRSTIWK--------------PVTT-PCGHSYCWMCLDRCLDYSSSCPLCKTSLADV 116 (156)
Q Consensus 68 ~~~~C~IC~~~~~~--------------pv~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 116 (156)
++..|+||++.+.+ ++.+ +|||.||..||.+|+....+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 45679999998866 4455 5999999999999999999999999987543
No 54
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.30 E-value=1.4e-13 Score=86.38 Aligned_cols=48 Identities=27% Similarity=0.589 Sum_probs=42.3
Q ss_pred CCCcccccccccccccccEEcccCCc-chHHhHHHHhcCCCCCcccccCCcCC
Q psy2479 65 ADSSDFDCILCRSTIWKPVTTPCGHS-YCWMCLDRCLDYSSSCPLCKTSLADV 116 (156)
Q Consensus 65 ~~~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 116 (156)
.+.+...|+||++.+.+++.+||||. ||..|+..| ..||+||.++...
T Consensus 20 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred cCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 34456789999999999999999999 999999887 7899999988654
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.22 E-value=2.2e-12 Score=88.64 Aligned_cols=54 Identities=28% Similarity=0.701 Sum_probs=48.2
Q ss_pred CCCccccccccccccccc-------EEcccCCcchHHhHHHHhcCCCCCcccccCCcCCCc
Q psy2479 65 ADSSDFDCILCRSTIWKP-------VTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGI 118 (156)
Q Consensus 65 ~~~~~~~C~IC~~~~~~p-------v~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 118 (156)
...+...|+||++.+.++ +.++|||+||..|+.+|+...++||.||..+....+
T Consensus 68 i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 68 IGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp CSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred cCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 345678899999999887 888999999999999999999999999999987665
No 56
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.6e-12 Score=81.60 Aligned_cols=47 Identities=28% Similarity=0.599 Sum_probs=40.7
Q ss_pred CCcccccccccccccccEEcccCCc-chHHhHHHHhcCCCCCcccccCCcCC
Q psy2479 66 DSSDFDCILCRSTIWKPVTTPCGHS-YCWMCLDRCLDYSSSCPLCKTSLADV 116 (156)
Q Consensus 66 ~~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 116 (156)
+.+...|+||++.+.+|+.+||||. ||..|+.. ...||+||.++...
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 3446789999999999999999999 99999964 37899999998664
No 57
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.21 E-value=7.3e-12 Score=83.79 Aligned_cols=47 Identities=26% Similarity=0.598 Sum_probs=40.8
Q ss_pred ccccccccccccccc------------------EEcccCCcchHHhHHHHhcCCCCCcccccCCc
Q psy2479 68 SDFDCILCRSTIWKP------------------VTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLA 114 (156)
Q Consensus 68 ~~~~C~IC~~~~~~p------------------v~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 114 (156)
++..|+||++.|.++ +.++|||.||..||..|+....+||+||..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 456799999998865 34699999999999999999999999999863
No 58
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.19 E-value=5.5e-12 Score=76.87 Aligned_cols=48 Identities=19% Similarity=0.574 Sum_probs=43.3
Q ss_pred cccccccccccccccEEc--ccCCc-chHHhHHHHhcCCCCCcccccCCcC
Q psy2479 68 SDFDCILCRSTIWKPVTT--PCGHS-YCWMCLDRCLDYSSSCPLCKTSLAD 115 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~~--~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 115 (156)
++..|+||++...+++.+ ||||. ||..|+..|......||+||.++..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 456899999999999877 99999 8999999999888899999998854
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.19 E-value=7.7e-12 Score=100.49 Aligned_cols=52 Identities=25% Similarity=0.572 Sum_probs=46.2
Q ss_pred CcccccccccccccccEEcccCCcchHHhHHHHhc-CCCCCcccccCCcCCCc
Q psy2479 67 SSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLD-YSSSCPLCKTSLADVGI 118 (156)
Q Consensus 67 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~ 118 (156)
.....|+||.+.+.+|+.+||||.||..|+..|+. ....||.||.++.....
T Consensus 330 ~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp TSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 34479999999999999999999999999999998 67899999999876544
No 60
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.17 E-value=5.4e-12 Score=76.24 Aligned_cols=53 Identities=13% Similarity=0.216 Sum_probs=47.5
Q ss_pred ccccccccccccccEEc-ccCCcchHHhHHHHhcCCCCCcccccCCcCCCcccc
Q psy2479 69 DFDCILCRSTIWKPVTT-PCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGILAT 121 (156)
Q Consensus 69 ~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 121 (156)
.+.|+|+++.+.+||.+ ++||+|++.||.+|+....+||+++.++...++++.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~ 56 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEI 56 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEEC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEEC
Confidence 47899999999999999 999999999999999887889999999988877543
No 61
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.15 E-value=1.2e-11 Score=75.10 Aligned_cols=47 Identities=28% Similarity=0.557 Sum_probs=42.3
Q ss_pred ccccccccccccccEEc--ccCCc-chHHhHHHHhcCCCCCcccccCCcC
Q psy2479 69 DFDCILCRSTIWKPVTT--PCGHS-YCWMCLDRCLDYSSSCPLCKTSLAD 115 (156)
Q Consensus 69 ~~~C~IC~~~~~~pv~~--~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 115 (156)
...|+||++...+++++ ||||. ||..|+..|......||+||.++..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 45799999999999877 99998 9999999999878899999999854
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=6.6e-11 Score=72.91 Aligned_cols=46 Identities=26% Similarity=0.726 Sum_probs=40.3
Q ss_pred CcccccccccccccccEEcccCCc-chHHhHHHHhcCCCCCcccccCCcCC
Q psy2479 67 SSDFDCILCRSTIWKPVTTPCGHS-YCWMCLDRCLDYSSSCPLCKTSLADV 116 (156)
Q Consensus 67 ~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 116 (156)
.+...|.||++...+++.+||||. ||..|+.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 346789999999999999999999 99999974 47899999998654
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.08 E-value=6.6e-12 Score=79.69 Aligned_cols=47 Identities=28% Similarity=0.750 Sum_probs=40.6
Q ss_pred CCcccccccccccccccEEcccCCc-chHHhHHHHhcCCCCCcccccCCcCC
Q psy2479 66 DSSDFDCILCRSTIWKPVTTPCGHS-YCWMCLDRCLDYSSSCPLCKTSLADV 116 (156)
Q Consensus 66 ~~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 116 (156)
+.+...|+||++.+.+++.+||||. ||..|+..| ..||+||.++...
T Consensus 15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 3445689999999999999999999 999999765 3899999998654
No 64
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.99 E-value=4.6e-11 Score=81.12 Aligned_cols=46 Identities=28% Similarity=0.642 Sum_probs=0.5
Q ss_pred cccccccccccccc-----------------E-EcccCCcchHHhHHHHhcCCCCCcccccCCc
Q psy2479 69 DFDCILCRSTIWKP-----------------V-TTPCGHSYCWMCLDRCLDYSSSCPLCKTSLA 114 (156)
Q Consensus 69 ~~~C~IC~~~~~~p-----------------v-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 114 (156)
+..|+||++.|.++ + .++|+|.||..||..|+....+||+||..+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp C---------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 46899999998763 2 2589999999999999999999999999863
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=9.1e-11 Score=76.54 Aligned_cols=66 Identities=23% Similarity=0.471 Sum_probs=47.0
Q ss_pred cccccccccccccccEEc---ccCCcchHHhHHHHhcC--------CCCCcc--cccC--CcCCCccccHHHHHHHHHHH
Q psy2479 68 SDFDCILCRSTIWKPVTT---PCGHSYCWMCLDRCLDY--------SSSCPL--CKTS--LADVGILATTCIEKRLKAIN 132 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~~---~CgH~fC~~Ci~~~~~~--------~~~CP~--Cr~~--~~~~~~~~~~~~n~~l~~l~ 132 (156)
+.+.|+||++.+..++.+ +|||.||..|+..++.. ...||. |+.. +....+ .+.+..++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-----~~ll~~~~~ 78 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-----ECMVAAEIM 78 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-----HHHSCHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-----HHHCCHHHH
Confidence 467899999999888543 79999999999999863 248999 9887 433322 222335556
Q ss_pred HHHHHh
Q psy2479 133 KTFELI 138 (156)
Q Consensus 133 ~~~~~~ 138 (156)
++|...
T Consensus 79 ~ky~~~ 84 (94)
T 1wim_A 79 QRYKKL 84 (94)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666553
No 66
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=6.7e-10 Score=70.50 Aligned_cols=51 Identities=31% Similarity=0.533 Sum_probs=41.8
Q ss_pred Cccccccccccccc--ccEEcccC-----CcchHHhHHHHhcCC--CCCcccccCCcCCC
Q psy2479 67 SSDFDCILCRSTIW--KPVTTPCG-----HSYCWMCLDRCLDYS--SSCPLCKTSLADVG 117 (156)
Q Consensus 67 ~~~~~C~IC~~~~~--~pv~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 117 (156)
.+...|.||++.+. +++++||+ |.||..||.+|+... .+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 34568999998874 56788996 999999999999764 59999999886543
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.91 E-value=1.8e-10 Score=91.61 Aligned_cols=48 Identities=25% Similarity=0.621 Sum_probs=42.5
Q ss_pred CCCcccccccccccccccEEcccCCc-chHHhHHHHhcCCCCCcccccCCcCC
Q psy2479 65 ADSSDFDCILCRSTIWKPVTTPCGHS-YCWMCLDRCLDYSSSCPLCKTSLADV 116 (156)
Q Consensus 65 ~~~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 116 (156)
.+.+...|+||++.+.+|+.+||||. ||..|+..| ..||+||.++...
T Consensus 291 ~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp HHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred hCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 34567899999999999999999999 999999877 6899999998654
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=3.4e-08 Score=61.60 Aligned_cols=49 Identities=18% Similarity=0.478 Sum_probs=41.1
Q ss_pred cccccccccccccccEEc-ccCCcchHHhHHHHhcCC--CCCcccccCCcCC
Q psy2479 68 SDFDCILCRSTIWKPVTT-PCGHSYCWMCLDRCLDYS--SSCPLCKTSLADV 116 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~ 116 (156)
....|+||...+.....- .|+|.|+..||.+|++.. .+||.||..+...
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 346799999999866544 799999999999999876 8999999887543
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.43 E-value=1.2e-07 Score=61.74 Aligned_cols=48 Identities=23% Similarity=0.492 Sum_probs=39.1
Q ss_pred ccccccccccccc-EEcccCCcchHHhHHHHhcC-CCCCcccccCCcCCC
Q psy2479 70 FDCILCRSTIWKP-VTTPCGHSYCWMCLDRCLDY-SSSCPLCKTSLADVG 117 (156)
Q Consensus 70 ~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 117 (156)
..|++|.-.+..- ..+||+|+||.+|+..|.+. .+.||.|+.++....
T Consensus 2 hfC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp CBCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred eecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 3688898877664 56799999999999999855 699999998875443
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.36 E-value=2.7e-07 Score=55.13 Aligned_cols=47 Identities=19% Similarity=0.478 Sum_probs=38.8
Q ss_pred cccccccccccccccEEcccC--C---cchHHhHHHHhcC--CCCCcccccCCc
Q psy2479 68 SDFDCILCRSTIWKPVTTPCG--H---SYCWMCLDRCLDY--SSSCPLCKTSLA 114 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~~~Cg--H---~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 114 (156)
+...|.||+....++.++||. + .||..|+.+|+.. ..+||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 456799999887777778865 4 7999999999965 689999998774
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.26 E-value=1.2e-07 Score=74.85 Aligned_cols=50 Identities=22% Similarity=0.612 Sum_probs=39.9
Q ss_pred Ccccccccccccccc----cE----EcccCCcchHHhHHHHhcCC-----------CCCcccccCCcCC
Q psy2479 67 SSDFDCILCRSTIWK----PV----TTPCGHSYCWMCLDRCLDYS-----------SSCPLCKTSLADV 116 (156)
Q Consensus 67 ~~~~~C~IC~~~~~~----pv----~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~~ 116 (156)
.....|+||...+.+ |. ...|||.||..|+.+|+... ..||+||.+++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 456789999998876 21 24799999999999999751 4799999988654
No 72
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=98.22 E-value=8.5e-07 Score=78.06 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=65.9
Q ss_pred cCCCcccccccccccccccEEcccC-CcchHHhHHHHhcCCCCCcccccCCcCCCccccHHHHHHHHHHHHHHHHhcccc
Q psy2479 64 RADSSDFDCILCRSTIWKPVTTPCG-HSYCWMCLDRCLDYSSSCPLCKTSLADVGILATTCIEKRLKAINKTFELIDQSE 142 (156)
Q Consensus 64 ~~~~~~~~C~IC~~~~~~pv~~~Cg-H~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~~~~~~~~~ 142 (156)
....+++.|||-.+++.+||++|.| ++|-+..|..|+....+||.-|.++....+ .+|..++..++.|......+
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~l----iPN~~Lk~~I~~w~~~~~~~ 961 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDV----TPNEELRQKILCFKKQKKEE 961 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC----EECHHHHHHHHHHHHHHHTT
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccc----cccHHHHHHHHHHHHHHHhh
Confidence 4678899999999999999999998 599999999999888999999999998888 55677788888887765544
Q ss_pred c
Q psy2479 143 R 143 (156)
Q Consensus 143 ~ 143 (156)
+
T Consensus 962 ~ 962 (968)
T 3m62_A 962 A 962 (968)
T ss_dssp C
T ss_pred h
Confidence 4
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.33 E-value=0.0002 Score=54.01 Aligned_cols=48 Identities=19% Similarity=0.477 Sum_probs=39.9
Q ss_pred ccccccccccccccEEcc-cCCcchHHhHHHHhcCC--CCCcccccCCcCC
Q psy2479 69 DFDCILCRSTIWKPVTTP-CGHSYCWMCLDRCLDYS--SSCPLCKTSLADV 116 (156)
Q Consensus 69 ~~~C~IC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~ 116 (156)
...|.||.+.......-+ |+|.||..|+..|+... ..||.|+......
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 567999999998776654 99999999999999763 5999999876543
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.14 E-value=0.00016 Score=47.00 Aligned_cols=33 Identities=27% Similarity=0.573 Sum_probs=27.8
Q ss_pred ccccccccccc-ccccEE--cccCCcchHHhHHHHh
Q psy2479 68 SDFDCILCRST-IWKPVT--TPCGHSYCWMCLDRCL 100 (156)
Q Consensus 68 ~~~~C~IC~~~-~~~pv~--~~CgH~fC~~Ci~~~~ 100 (156)
+++.|+||.+. +.+|+. +.|+|.||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 35789999975 678887 8999999999999843
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=94.79 E-value=0.034 Score=34.52 Aligned_cols=52 Identities=19% Similarity=0.559 Sum_probs=37.1
Q ss_pred CcccccccccccccccEEccc----CCcchHHhHHHHhcC-----------CCCCcccccCCcCCCc
Q psy2479 67 SSDFDCILCRSTIWKPVTTPC----GHSYCWMCLDRCLDY-----------SSSCPLCKTSLADVGI 118 (156)
Q Consensus 67 ~~~~~C~IC~~~~~~pv~~~C----gH~fC~~Ci~~~~~~-----------~~~CP~Cr~~~~~~~~ 118 (156)
...+.|.+|.+.+.+..+..| +|-||..|-...++. ..+||+-+..+.+...
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kCpL~gS~~PWAFm 79 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVGSNVPWAFM 79 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCCBCSSSSSBCCCC
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCccccCCCcCchHHH
Confidence 456889999999999855544 688999999888764 2355655555544444
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.14 E-value=0.064 Score=34.31 Aligned_cols=49 Identities=29% Similarity=0.495 Sum_probs=37.1
Q ss_pred cccccccccccccccEEccc-CCcchHHhHHHHhcCCCCCcccccCCcCCCc
Q psy2479 68 SDFDCILCRSTIWKPVTTPC-GHSYCWMCLDRCLDYSSSCPLCKTSLADVGI 118 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~~~C-gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 118 (156)
.-+.|..|--.... .+.| -|.+|..|+.-.+..+..||+|..++..+..
T Consensus 27 G~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 27 GPQFCKSCWFENKG--LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp CCCCCCSSCSCCSS--EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSC
T ss_pred CcccChhhccccCC--eeeecchhhHHHHHHHHHhhccCCcccCCcCCccee
Confidence 34678777544432 3444 5778999999999999999999999877665
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=92.63 E-value=0.088 Score=41.92 Aligned_cols=66 Identities=15% Similarity=0.366 Sum_probs=47.5
Q ss_pred CCcccccccccccccccEEc-ccCCcchHHh--HHHHhc--CCCCCcccccCCcCCCccccHHHHHHHHHH
Q psy2479 66 DSSDFDCILCRSTIWKPVTT-PCGHSYCWMC--LDRCLD--YSSSCPLCKTSLADVGILATTCIEKRLKAI 131 (156)
Q Consensus 66 ~~~~~~C~IC~~~~~~pv~~-~CgH~fC~~C--i~~~~~--~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l 131 (156)
..-.+.||+-...+..|+.- .|.|.-|.+- +..... ..-.||+|++.+...++..+..+.+.+..+
T Consensus 246 ~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 246 TIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC 316 (371)
T ss_dssp EEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred eEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence 34468999999999999865 7999855443 222221 257999999999888887776666555443
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=91.46 E-value=0.2 Score=39.78 Aligned_cols=65 Identities=17% Similarity=0.319 Sum_probs=46.5
Q ss_pred CCCcccccccccccccccEEc-ccCCcchHHh--HHHHhc--CCCCCcccccCCcCCCccccHHHHHHHH
Q psy2479 65 ADSSDFDCILCRSTIWKPVTT-PCGHSYCWMC--LDRCLD--YSSSCPLCKTSLADVGILATTCIEKRLK 129 (156)
Q Consensus 65 ~~~~~~~C~IC~~~~~~pv~~-~CgH~fC~~C--i~~~~~--~~~~CP~Cr~~~~~~~~~~~~~~n~~l~ 129 (156)
...-.+.||+-...+..|+.- .|.|.-|.+- +..... ..-.||+|++.+...++..+..+...+.
T Consensus 211 ~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 211 SLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp CEEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred eeEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 344578999999999999864 7999955443 222222 2579999999998888866666655554
No 79
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=85.20 E-value=0.47 Score=31.34 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=39.4
Q ss_pred cccccccccccccc---cEEcccCCcchHHhHHHHhcCCCCCcccccCCcCCCc
Q psy2479 68 SDFDCILCRSTIWK---PVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGI 118 (156)
Q Consensus 68 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 118 (156)
+-+.|..|...+.+ .....=|..||..|..+.+.....|..|+.+|....+
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 34789999998863 3455677889999998877655589999999976544
No 80
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=85.13 E-value=0.71 Score=26.88 Aligned_cols=40 Identities=25% Similarity=0.488 Sum_probs=29.3
Q ss_pred cccccccccccccEE---cccCCcchHHhHHHHhcCCCCCccc
Q psy2479 70 FDCILCRSTIWKPVT---TPCGHSYCWMCLDRCLDYSSSCPLC 109 (156)
Q Consensus 70 ~~C~IC~~~~~~pv~---~~CgH~fC~~Ci~~~~~~~~~CP~C 109 (156)
..|--|...+.+... ..|++.||.+|=.-......+||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 358889888866542 3699999999954334446899988
No 81
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=84.47 E-value=0.91 Score=26.90 Aligned_cols=44 Identities=18% Similarity=0.480 Sum_probs=31.1
Q ss_pred cccccccccccccccEEc--ccCCcchHHhHHHHhcC----CCCCcccccCC
Q psy2479 68 SDFDCILCRSTIWKPVTT--PCGHSYCWMCLDRCLDY----SSSCPLCKTSL 113 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~~--~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 113 (156)
....|.||.+. ..+++ .|...||..|+...+.. .-.||.|....
T Consensus 11 ~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC--CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34569999863 22333 69899999999877655 34899997543
No 82
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=83.59 E-value=0.33 Score=35.86 Aligned_cols=33 Identities=21% Similarity=0.498 Sum_probs=24.1
Q ss_pred CCcccccccccccccccEE----cccCCcchHHhHHH
Q psy2479 66 DSSDFDCILCRSTIWKPVT----TPCGHSYCWMCLDR 98 (156)
Q Consensus 66 ~~~~~~C~IC~~~~~~pv~----~~CgH~fC~~Ci~~ 98 (156)
+.+...|.+|...|.--.. ..||+.||..|...
T Consensus 161 W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 161 WVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cccCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 3345689999988764322 37999999999753
No 83
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=83.17 E-value=1.7 Score=27.12 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=25.9
Q ss_pred ccCCCcccccccccccccccEEc---ccCCcchHHhHHHH
Q psy2479 63 TRADSSDFDCILCRSTIWKPVTT---PCGHSYCWMCLDRC 99 (156)
Q Consensus 63 ~~~~~~~~~C~IC~~~~~~pv~~---~CgH~fC~~Ci~~~ 99 (156)
.+.+..+-.|.||.-. .....+ -|+.+||..|+.+.
T Consensus 9 ~e~~~~D~~C~VC~~~-t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 9 REPVVNDEMCDVCEVW-TAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCCSCCCTTTCCC-CSSCCSSCSSSSSCCCHHHHHHH
T ss_pred ccCCCCCcccCccccc-cccceeccccccccccHhhcccc
Confidence 3445567889999743 333344 48899999999987
No 84
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=83.08 E-value=0.37 Score=35.31 Aligned_cols=33 Identities=21% Similarity=0.464 Sum_probs=23.9
Q ss_pred CCcccccccccccccccE---E-cccCCcchHHhHHH
Q psy2479 66 DSSDFDCILCRSTIWKPV---T-TPCGHSYCWMCLDR 98 (156)
Q Consensus 66 ~~~~~~C~IC~~~~~~pv---~-~~CgH~fC~~Ci~~ 98 (156)
+.+...|.+|...|.--. . ..||+.||..|...
T Consensus 158 W~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 158 WADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 345578999998876321 1 37999999999643
No 85
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=78.10 E-value=0.97 Score=27.19 Aligned_cols=28 Identities=18% Similarity=0.469 Sum_probs=21.3
Q ss_pred cccccccccccccEE----cccCCcchHHhHH
Q psy2479 70 FDCILCRSTIWKPVT----TPCGHSYCWMCLD 97 (156)
Q Consensus 70 ~~C~IC~~~~~~pv~----~~CgH~fC~~Ci~ 97 (156)
..|.+|...|.--.. ..||..||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 479999988764322 3799999999964
No 86
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=77.85 E-value=0.69 Score=31.01 Aligned_cols=30 Identities=23% Similarity=0.647 Sum_probs=22.2
Q ss_pred ccccccccccccccEE----cccCCcchHHhHHH
Q psy2479 69 DFDCILCRSTIWKPVT----TPCGHSYCWMCLDR 98 (156)
Q Consensus 69 ~~~C~IC~~~~~~pv~----~~CgH~fC~~Ci~~ 98 (156)
...|.+|...|.--.. ..||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3579999998764321 37999999999643
No 87
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=75.99 E-value=1 Score=27.76 Aligned_cols=30 Identities=23% Similarity=0.610 Sum_probs=22.4
Q ss_pred ccccccccccccccEE----cccCCcchHHhHHH
Q psy2479 69 DFDCILCRSTIWKPVT----TPCGHSYCWMCLDR 98 (156)
Q Consensus 69 ~~~C~IC~~~~~~pv~----~~CgH~fC~~Ci~~ 98 (156)
...|.+|...|.--.. ..||.+||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 3579999988864321 37999999999754
No 88
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=75.69 E-value=1.1 Score=26.88 Aligned_cols=49 Identities=18% Similarity=0.396 Sum_probs=33.3
Q ss_pred CCcccccccccccccccEEc---ccCCcchHHhHHHHhcC----CCCCcccccCCc
Q psy2479 66 DSSDFDCILCRSTIWKPVTT---PCGHSYCWMCLDRCLDY----SSSCPLCKTSLA 114 (156)
Q Consensus 66 ~~~~~~C~IC~~~~~~pv~~---~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~ 114 (156)
..+...|++|.........+ .|..-||..|+...... ...||.|...+.
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34567799998876543233 68888999998654432 468999976543
No 89
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=75.53 E-value=3.2 Score=26.16 Aligned_cols=46 Identities=26% Similarity=0.561 Sum_probs=33.6
Q ss_pred cccccccccccccc----EEc---ccCCcchHHhHHHHhcC-CCCCcccccCCc
Q psy2479 69 DFDCILCRSTIWKP----VTT---PCGHSYCWMCLDRCLDY-SSSCPLCKTSLA 114 (156)
Q Consensus 69 ~~~C~IC~~~~~~p----v~~---~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 114 (156)
.-.|.||.+.+--. ++. .|+-..|+.|..--.+. +..||.|+....
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 45799999875321 333 57778899999655544 789999988775
No 90
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=74.93 E-value=0.17 Score=33.91 Aligned_cols=44 Identities=20% Similarity=0.521 Sum_probs=29.0
Q ss_pred cccccccccccccc---EE-cccCCcchHHhHHHHhcCCCCCcccccC
Q psy2479 69 DFDCILCRSTIWKP---VT-TPCGHSYCWMCLDRCLDYSSSCPLCKTS 112 (156)
Q Consensus 69 ~~~C~IC~~~~~~p---v~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~ 112 (156)
...|..|...|.-- .. ..||..||..|........+.|-.|-..
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 45799998887642 11 3799999999976555446778888543
No 91
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=74.69 E-value=1 Score=27.83 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=23.0
Q ss_pred cccccccccccccccEE----cccCCcchHHhHHH
Q psy2479 68 SDFDCILCRSTIWKPVT----TPCGHSYCWMCLDR 98 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~----~~CgH~fC~~Ci~~ 98 (156)
+...|.+|...|.--.. ..||+.||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 34679999988764322 37999999999754
No 92
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=74.18 E-value=0.38 Score=37.39 Aligned_cols=46 Identities=22% Similarity=0.332 Sum_probs=35.4
Q ss_pred CcccccccccccccccEEc----ccC--CcchHHhHHHHhcCCCCCcccccC
Q psy2479 67 SSDFDCILCRSTIWKPVTT----PCG--HSYCWMCLDRCLDYSSSCPLCKTS 112 (156)
Q Consensus 67 ~~~~~C~IC~~~~~~pv~~----~Cg--H~fC~~Ci~~~~~~~~~CP~Cr~~ 112 (156)
+..-.||+|...-.-.++. .=| +.+|..|-..|......||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5678999999876655443 234 457999999999889999999875
No 93
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=73.76 E-value=1.7 Score=28.64 Aligned_cols=48 Identities=17% Similarity=0.356 Sum_probs=34.8
Q ss_pred cccccccccccccc---cEEcccCCcchHHhHHHHhcCCCCCcccccCCcC
Q psy2479 68 SDFDCILCRSTIWK---PVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLAD 115 (156)
Q Consensus 68 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 115 (156)
+-+.|..|...+.. +....=|..||..|..+.+.....|..|+.+|..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 45788888888852 4455667789999987766544478888888764
No 94
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=73.51 E-value=0.94 Score=32.16 Aligned_cols=48 Identities=21% Similarity=0.400 Sum_probs=33.6
Q ss_pred cccccccccccccc---cEEcccCCcchHHhHHHHhcCCCCCcccccCCcC
Q psy2479 68 SDFDCILCRSTIWK---PVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLAD 115 (156)
Q Consensus 68 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 115 (156)
+-+.|..|...+.. .....=|..||..|..+.+.....|..|+.+|..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCcccc
Confidence 45788888888774 4455667788999887665433368888877754
No 95
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=73.38 E-value=2.4 Score=24.30 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=26.1
Q ss_pred cccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCcCC
Q psy2479 70 FDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADV 116 (156)
Q Consensus 70 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 116 (156)
..|+.|...+...++..-|..|+..| +.|..|+.+|...
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 44 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEH--------FVCAKCEKPFLGH 44 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTT--------CBCTTTCCBCSSS
T ss_pred CCCcccCCEecceEEEECccccccCc--------CEECCCCCCCCCC
Confidence 45777777776655556666666666 4677787777543
No 96
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=72.99 E-value=0.76 Score=23.67 Aligned_cols=15 Identities=20% Similarity=0.476 Sum_probs=9.4
Q ss_pred ccccccccccccccc
Q psy2479 68 SDFDCILCRSTIWKP 82 (156)
Q Consensus 68 ~~~~C~IC~~~~~~p 82 (156)
+.+.||+|...+..+
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 346677777666554
No 97
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=72.52 E-value=5.3 Score=24.40 Aligned_cols=43 Identities=23% Similarity=0.266 Sum_probs=32.6
Q ss_pred CcccccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCcCCC
Q psy2479 67 SSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVG 117 (156)
Q Consensus 67 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 117 (156)
.....|.-|.+.+...++..-+..||..| +.|-.|+..|....
T Consensus 23 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~~ 65 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVVKARDKYRHPEC--------FVCADCNLNLKQKG 65 (89)
T ss_dssp CSCCBCTTTCCBCCSCCEESSSCEECTTT--------CCCSSSCCCTTTSC
T ss_pred CcCCCcccCCCEecccEEEECCceECccC--------CEecCCCCCCCCCC
Confidence 34567999998888766667777888887 57999988886543
No 98
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.20 E-value=3 Score=24.25 Aligned_cols=37 Identities=22% Similarity=0.484 Sum_probs=21.4
Q ss_pred cccccccccc--ccEEcccCCcchHHhHHHHhcCCCCCcccccCCcC
Q psy2479 71 DCILCRSTIW--KPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLAD 115 (156)
Q Consensus 71 ~C~IC~~~~~--~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 115 (156)
.|+-|...+. +.++..-|..||..| +.|-.|+.+|..
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 7 GCSACGETVMPGSRKLEYGGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp BCSSSCCBCCSSSCEECSTTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCccCCCccccCccEEEECccccCccc--------CeECCCCCcCCC
Confidence 5666666665 334445566666655 456666666544
No 99
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.13 E-value=2.6 Score=25.26 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=28.9
Q ss_pred cccccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCcC
Q psy2479 68 SDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLAD 115 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 115 (156)
....|+-|.+.+...++..-+..||..| +.|-.|+.+|..
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVKLRDRHRHPEC--------YVCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCSSSCCCCCSSCEECSSCEECTTT--------TSCSSSCCCHHH
T ss_pred CCCccccCCCCccCcEEEECcceeCcCc--------CeeCCCCCCCCC
Confidence 3467888888877766666777777777 468888777643
No 100
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.59 E-value=1.2 Score=27.60 Aligned_cols=29 Identities=28% Similarity=0.577 Sum_probs=21.6
Q ss_pred ccccccccccccccEE----cccCCcchHHhHH
Q psy2479 69 DFDCILCRSTIWKPVT----TPCGHSYCWMCLD 97 (156)
Q Consensus 69 ~~~C~IC~~~~~~pv~----~~CgH~fC~~Ci~ 97 (156)
...|.+|...|.--.. ..||.+||..|..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 4579999988753321 3799999999964
No 101
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=71.39 E-value=1.3 Score=27.83 Aligned_cols=31 Identities=23% Similarity=0.642 Sum_probs=22.6
Q ss_pred ccccccccccccccEE----cccCCcchHHhHHHH
Q psy2479 69 DFDCILCRSTIWKPVT----TPCGHSYCWMCLDRC 99 (156)
Q Consensus 69 ~~~C~IC~~~~~~pv~----~~CgH~fC~~Ci~~~ 99 (156)
...|.+|...|.--.. ..||++||..|....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 4579999987763211 379999999997543
No 102
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=70.63 E-value=2.7 Score=27.44 Aligned_cols=46 Identities=17% Similarity=0.382 Sum_probs=35.6
Q ss_pred ccccccccccccccc-EEcccCCcchHHhHHHHhcCCCCCcccccCCcC
Q psy2479 68 SDFDCILCRSTIWKP-VTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLAD 115 (156)
Q Consensus 68 ~~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 115 (156)
+-+.|..|...+... ....=|..||..|..+.+ ...|..|+.+|..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH--AVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS--CCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc--CccCcccCCcCCc
Confidence 458899999888763 345678889999986654 4789999999875
No 103
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=70.44 E-value=3.1 Score=23.98 Aligned_cols=44 Identities=25% Similarity=0.633 Sum_probs=30.4
Q ss_pred CCcccccccccccccccEEc--ccCCcchHHhHHHHhcC----CCCCccccc
Q psy2479 66 DSSDFDCILCRSTIWKPVTT--PCGHSYCWMCLDRCLDY----SSSCPLCKT 111 (156)
Q Consensus 66 ~~~~~~C~IC~~~~~~pv~~--~CgH~fC~~Ci~~~~~~----~~~CP~Cr~ 111 (156)
......|.+|... ..++. .|...||..|+..-+.. .-.||.|..
T Consensus 8 ~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3445679999873 23333 68889999999875433 458999954
No 104
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.08 E-value=2.1 Score=26.35 Aligned_cols=40 Identities=25% Similarity=0.442 Sum_probs=29.5
Q ss_pred ccccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCcCC
Q psy2479 69 DFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADV 116 (156)
Q Consensus 69 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 116 (156)
...|+-|.+.+...++..-|..||..| +.|-.|+.+|...
T Consensus 25 ~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVALGKSWHPEE--------FNCAHCKNTMAYI 64 (90)
T ss_dssp CCBBSSSCCBCCSCEEEETTEEECTTT--------CBCSSSCCBCSSS
T ss_pred CCCCccCCCEecceEEEECCccccccC--------CccCCCCCCCCCC
Confidence 456888888887666666777777777 5788888887654
No 105
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=69.85 E-value=0.44 Score=29.34 Aligned_cols=20 Identities=25% Similarity=0.913 Sum_probs=16.0
Q ss_pred ccCCcchHHhHHHHhcCCCCCc
Q psy2479 86 PCGHSYCWMCLDRCLDYSSSCP 107 (156)
Q Consensus 86 ~CgH~fC~~Ci~~~~~~~~~CP 107 (156)
.||+.||..|...|.. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 5999999999988876 4554
No 106
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.50 E-value=4 Score=24.45 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=27.0
Q ss_pred ccccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCcCC
Q psy2479 69 DFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADV 116 (156)
Q Consensus 69 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 116 (156)
...|+-|...+.+.++..-|..||..| +.|..|+.+|...
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCccCCCEecceEEEECcceeCCCC--------CEeCCCCCccCCC
Confidence 356888877777655556666666666 5688887777644
No 107
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=69.34 E-value=1.2 Score=27.90 Aligned_cols=30 Identities=23% Similarity=0.526 Sum_probs=22.2
Q ss_pred ccccccccccccccEE----cccCCcchHHhHHH
Q psy2479 69 DFDCILCRSTIWKPVT----TPCGHSYCWMCLDR 98 (156)
Q Consensus 69 ~~~C~IC~~~~~~pv~----~~CgH~fC~~Ci~~ 98 (156)
...|.+|...|.--.. ..||++||..|...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 4579999988764321 37999999999743
No 108
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=69.01 E-value=1.6 Score=27.98 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=11.2
Q ss_pred cchHHhHHHHhcC
Q psy2479 90 SYCWMCLDRCLDY 102 (156)
Q Consensus 90 ~fC~~Ci~~~~~~ 102 (156)
.||+.|+.+|...
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999963
No 109
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=68.88 E-value=1.6 Score=28.00 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=11.3
Q ss_pred cchHHhHHHHhcC
Q psy2479 90 SYCWMCLDRCLDY 102 (156)
Q Consensus 90 ~fC~~Ci~~~~~~ 102 (156)
.||+.|+.+|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999964
No 110
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=68.14 E-value=1.9 Score=23.72 Aligned_cols=41 Identities=24% Similarity=0.630 Sum_probs=26.2
Q ss_pred cccccccccccc-EEc--ccCCcchHHhHHHHhcC----CCCCccccc
Q psy2479 71 DCILCRSTIWKP-VTT--PCGHSYCWMCLDRCLDY----SSSCPLCKT 111 (156)
Q Consensus 71 ~C~IC~~~~~~p-v~~--~CgH~fC~~Ci~~~~~~----~~~CP~Cr~ 111 (156)
.|.||...-... ++. .|...||..|+..-+.. .-.||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 477777543222 222 68888999999755543 346898854
No 111
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=68.12 E-value=5.3 Score=27.57 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=22.3
Q ss_pred cccccccccccccccEEcccCCcchHHhHHHHh
Q psy2479 68 SDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCL 100 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~ 100 (156)
+-+.|..|...+.......=|..||..|....+
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f 64 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF 64 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH
T ss_pred ccCccCCCCCcCCCCCcccCCeeeecccccccc
Confidence 457788888777664444556778888876544
No 112
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.06 E-value=2 Score=24.95 Aligned_cols=38 Identities=32% Similarity=0.595 Sum_probs=19.9
Q ss_pred ccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCcCC
Q psy2479 71 DCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADV 116 (156)
Q Consensus 71 ~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 116 (156)
.|.-|.+.+.+.++..-+..||..| +.|-.|+.+|...
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 7 GCHQCGEFIIGRVIKAMNNSWHPEC--------FRCDLCQEVLADI 44 (70)
T ss_dssp BCSSSCCBCCSCCEEETTEEECTTT--------SBCSSSCCBCSSS
T ss_pred cCccCCCEecceEEEECcccccccC--------CEeCCCCCcCCCC
Confidence 4666665555444444444555555 3566666555443
No 113
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.97 E-value=3.5 Score=23.81 Aligned_cols=36 Identities=22% Similarity=0.521 Sum_probs=16.7
Q ss_pred ccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCc
Q psy2479 71 DCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLA 114 (156)
Q Consensus 71 ~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 114 (156)
.|..|.+.+....+..-+..||..| +.|-.|+.+|.
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 7 GCVQCKKPITTGGVTYREQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp BCSSSCCBCCSSEEESSSSEEETTT--------SBCSSSCCBCT
T ss_pred CCcccCCeeccceEEECccccCCCC--------CccCCCCCcCC
Confidence 3555555444433334444444444 34555555443
No 114
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=67.52 E-value=2.4 Score=26.45 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=34.5
Q ss_pred CCCccccccccccccc-c--cEEc--ccCCcchHHhHHHHhcC--CCCCcccccCCcCCC
Q psy2479 65 ADSSDFDCILCRSTIW-K--PVTT--PCGHSYCWMCLDRCLDY--SSSCPLCKTSLADVG 117 (156)
Q Consensus 65 ~~~~~~~C~IC~~~~~-~--pv~~--~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~ 117 (156)
...++..|.||...-. + .+++ .|.-.|+..|+...... .-.||.|........
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~ 80 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPA 80 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhh
Confidence 3456788999997541 1 2222 68889999999654322 457999976554443
No 115
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=67.23 E-value=1.2 Score=28.38 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=29.7
Q ss_pred CcccccccccccccccEEc---ccCCcchHHhHHHHhcC---CCCCccccc
Q psy2479 67 SSDFDCILCRSTIWKPVTT---PCGHSYCWMCLDRCLDY---SSSCPLCKT 111 (156)
Q Consensus 67 ~~~~~C~IC~~~~~~pv~~---~CgH~fC~~Ci~~~~~~---~~~CP~Cr~ 111 (156)
.+.+.| ||.....+..++ .|..-|+..|+..-... ...||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 345678 898766555444 57778999998543322 469999964
No 116
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.78 E-value=3 Score=24.65 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=17.9
Q ss_pred ccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCc
Q psy2479 71 DCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLA 114 (156)
Q Consensus 71 ~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 114 (156)
.|+-|...+...++..-+..||..| +.|-.|+.+|.
T Consensus 7 ~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 7 GCDSCEKYITGRVLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp SCSSSCCCCSSCCBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CcccCCCEecCeeEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 4555555554443344444555444 34555555554
No 117
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=65.53 E-value=1.3 Score=35.35 Aligned_cols=32 Identities=19% Similarity=0.466 Sum_probs=0.0
Q ss_pred ccccccccccccccEE----cccCCcchHHhHHHHh
Q psy2479 69 DFDCILCRSTIWKPVT----TPCGHSYCWMCLDRCL 100 (156)
Q Consensus 69 ~~~C~IC~~~~~~pv~----~~CgH~fC~~Ci~~~~ 100 (156)
...|.+|...|.--.. ..||++||..|.....
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 4679999988763211 3799999999986543
No 118
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=65.28 E-value=0.56 Score=27.30 Aligned_cols=33 Identities=30% Similarity=0.731 Sum_probs=23.0
Q ss_pred ccccccccccccc-----EEcc---cCCcchHHhHHHHhcC
Q psy2479 70 FDCILCRSTIWKP-----VTTP---CGHSYCWMCLDRCLDY 102 (156)
Q Consensus 70 ~~C~IC~~~~~~p-----v~~~---CgH~fC~~Ci~~~~~~ 102 (156)
-.||-|...+... ++-. |++.||..|...|...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 4688887766543 2223 9999999998877653
No 119
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.76 E-value=4.2 Score=23.66 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=18.7
Q ss_pred ccccccccccc----cEEcccCCcchHHhHHHHhcCCCCCcccccCCc
Q psy2479 71 DCILCRSTIWK----PVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLA 114 (156)
Q Consensus 71 ~C~IC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 114 (156)
.|+-|.+.+.. .++..-+..||..| +.|-.|+.+|.
T Consensus 7 ~C~~C~~~I~~~~~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 7 GCAGCTNPISGLGGTKYISFEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SBTTTTBCCCCSSSCSCEECSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCcCCCccccCCCCcceEEECCcccCccc--------CEeccCCCcCC
Confidence 46666655553 33334455555555 35666655554
No 120
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.58 E-value=3.4 Score=24.71 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=21.8
Q ss_pred ccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCc
Q psy2479 71 DCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLA 114 (156)
Q Consensus 71 ~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 114 (156)
.|+.|.+.+.+.++..-+..||..| +.|..|+.+|.
T Consensus 17 ~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 17 FCHGCSLLMTGPFMVAGEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp BCTTTCCBCCSCCBCCTTCCBCTTS--------CBCTTTCCBCC
T ss_pred cCccCCCCcCceEEEECCceecccc--------CCccCCCCccC
Confidence 5667766666554445556666555 45667766664
No 121
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.83 E-value=3.1 Score=24.95 Aligned_cols=40 Identities=23% Similarity=0.493 Sum_probs=28.5
Q ss_pred cccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCcCCC
Q psy2479 70 FDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVG 117 (156)
Q Consensus 70 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 117 (156)
..|+.|.+.+...++..-+..||..| +.|-.|+.+|....
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~~~~ 55 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVVSALGKTYHPDC--------FVCAVCRLPFPPGD 55 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTT--------SSCSSSCCCCCSSS
T ss_pred CcCccccCEeccceEEECCceeCccC--------CccccCCCCCCCCC
Confidence 36888888777655556677777777 57888888876443
No 122
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=63.27 E-value=11 Score=25.64 Aligned_cols=42 Identities=24% Similarity=0.517 Sum_probs=28.6
Q ss_pred cccccccccccccccEE--cccCCcchHHhHHHHhc---------C--CCCCccccc
Q psy2479 68 SDFDCILCRSTIWKPVT--TPCGHSYCWMCLDRCLD---------Y--SSSCPLCKT 111 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~--~~CgH~fC~~Ci~~~~~---------~--~~~CP~Cr~ 111 (156)
.+..|.+|.+-=. +. -.|-..||..|+..-+. . .-.||.|+.
T Consensus 62 ~~d~C~vC~~GG~--LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGGN--LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCSS--EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCCc--EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3567888875221 11 16888999999986653 1 458999964
No 123
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.38 E-value=5.3 Score=23.81 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=26.3
Q ss_pred ccccccccccc--ccEEcccCCcchHHhHHHHhcCCCCCcccccCCcCC
Q psy2479 70 FDCILCRSTIW--KPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADV 116 (156)
Q Consensus 70 ~~C~IC~~~~~--~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 116 (156)
..|+.|.+.+. +.++..-+..||..| +.|-.|+.+|...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEEEECcccccccc--------CchhhCCCccCCC
Confidence 46888887776 444555666777666 5688887777554
No 124
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=62.12 E-value=5.1 Score=28.05 Aligned_cols=47 Identities=13% Similarity=0.334 Sum_probs=31.0
Q ss_pred cccccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCcCC
Q psy2479 68 SDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADV 116 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 116 (156)
+-+.|..|...+.......=|..||..|..+.+ ...|..|+.++...
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF--GTKCAACQLGIPPT 132 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTT--SCCCTTTCCCCCSS
T ss_pred ccCccCCCCCccCCCceeECCEeeecCcccccc--ccccccCCCccCCC
Confidence 346777777776654334456678888876544 46788888877653
No 125
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=61.78 E-value=2.4 Score=24.49 Aligned_cols=44 Identities=25% Similarity=0.486 Sum_probs=29.3
Q ss_pred CcccccccccccccccEEc--ccCCcchHHhHHHHhcC----CCCCcccccC
Q psy2479 67 SSDFDCILCRSTIWKPVTT--PCGHSYCWMCLDRCLDY----SSSCPLCKTS 112 (156)
Q Consensus 67 ~~~~~C~IC~~~~~~pv~~--~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~ 112 (156)
.....|.+|... ..++. .|...||..|+..-+.. .-.||.|...
T Consensus 7 ~~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC--CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 345679999862 22222 58888999999765543 3479999654
No 126
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=61.48 E-value=2.5 Score=27.46 Aligned_cols=28 Identities=25% Similarity=0.628 Sum_probs=17.9
Q ss_pred cccCCcchHHhHHHHhcCCCCCcccccCCcCCC
Q psy2479 85 TPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVG 117 (156)
Q Consensus 85 ~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 117 (156)
..||++|+ ..+.....||.|+..-....
T Consensus 71 ~~CG~~F~-----~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 71 RKCGFVFK-----AEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp TTTCCBCC-----CCSSCCSSCSSSCCCCBCCC
T ss_pred hhCcCeec-----ccCCCCCCCcCCCCCccCCc
Confidence 46888881 22334689999987654433
No 127
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.46 E-value=4.4 Score=23.93 Aligned_cols=36 Identities=22% Similarity=0.461 Sum_probs=19.7
Q ss_pred ccccccccccc----cEEcccCCcchHHhHHHHhcCCCCCcccccCCc
Q psy2479 71 DCILCRSTIWK----PVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLA 114 (156)
Q Consensus 71 ~C~IC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 114 (156)
.|+.|.+.+.. .++..-+..||..| +.|..|+.+|.
T Consensus 7 ~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 7 GCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCC
Confidence 46666665553 34444455555555 35666666554
No 128
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.88 E-value=4 Score=24.10 Aligned_cols=39 Identities=21% Similarity=0.548 Sum_probs=25.1
Q ss_pred ccccccccccc-ccEEcccCCcchHHhHHHHhcCCCCCcccccCCcCC
Q psy2479 70 FDCILCRSTIW-KPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADV 116 (156)
Q Consensus 70 ~~C~IC~~~~~-~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 116 (156)
..|+.|.+.+. ...+..-+..||..| +.|..|+.+|...
T Consensus 10 ~~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSSLGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCcCCCCEeECCeEEEECCeEeeCCC--------CCCCCCCCccCCC
Confidence 46788877766 334445566666666 5677887777644
No 129
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.82 E-value=3.3 Score=24.81 Aligned_cols=37 Identities=24% Similarity=0.591 Sum_probs=20.0
Q ss_pred cccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCc
Q psy2479 70 FDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLA 114 (156)
Q Consensus 70 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 114 (156)
..|+-|...+.+.++..-+..|+..| +.|..|+.+|.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 2dlo_A 16 EKCATCSQPILDRILRAMGKAYHPGC--------FTCVVCHRGLD 52 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTT--------CBCSSSCCBCT
T ss_pred CccccCCCeecceeEEECCccccHHh--------cCcccCCCccC
Confidence 35666666555444444455555554 45666666554
No 130
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.74 E-value=3.5 Score=23.79 Aligned_cols=30 Identities=23% Similarity=0.554 Sum_probs=13.0
Q ss_pred ccccccccccccc-EEcccCCcchHHhHHHH
Q psy2479 70 FDCILCRSTIWKP-VTTPCGHSYCWMCLDRC 99 (156)
Q Consensus 70 ~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~ 99 (156)
+.|..|...+... ....=|..||..|..+.
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (69)
T 2cur_A 32 FVCVTCSKKLAGQRFTAVEDQYYCVDCYKNF 62 (69)
T ss_dssp TBCTTTCCBCTTSCEEECSSCEEEHHHHHHH
T ss_pred CEECCCCCCCCCCccEeECCEEECHHHhHHH
Confidence 4455555444332 22233444555554433
No 131
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.27 E-value=4.6 Score=23.41 Aligned_cols=38 Identities=24% Similarity=0.470 Sum_probs=19.7
Q ss_pred ccccccccccc--cEEcccCCcchHHhHHHHhcCCCCCcccccCCcCC
Q psy2479 71 DCILCRSTIWK--PVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADV 116 (156)
Q Consensus 71 ~C~IC~~~~~~--pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 116 (156)
.|+.|.+.+.. .++..-|..||..| +.|-.|+.+|...
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKMEYKGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CBSSSCCCCCSSSCEEEETTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCccCCCcccCCceEEEECcCeecccC--------CcccccCCccCCC
Confidence 46666665553 23344455555555 3566666655443
No 132
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=57.93 E-value=0.74 Score=29.54 Aligned_cols=41 Identities=24% Similarity=0.643 Sum_probs=27.1
Q ss_pred cccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCcC
Q psy2479 70 FDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLAD 115 (156)
Q Consensus 70 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 115 (156)
..||+|...+.-- =++.+|..|-.. +.....||.|++++..
T Consensus 33 ~~CP~Cq~eL~~~----g~~~hC~~C~~~-f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQD----NGHARCRSCGEF-IEMKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEE----TTEEEETTTCCE-EEEEEECTTTCSBCEE
T ss_pred ccCccCCCcceec----CCEEECccccch-hhccccCcchhhHHHH
Confidence 7899999766431 133348888542 3335689999988743
No 133
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=57.68 E-value=7.2 Score=26.32 Aligned_cols=30 Identities=27% Similarity=0.531 Sum_probs=20.8
Q ss_pred ccccccccccccc---cc-EE-cccCCcchHHhHH
Q psy2479 68 SDFDCILCRSTIW---KP-VT-TPCGHSYCWMCLD 97 (156)
Q Consensus 68 ~~~~C~IC~~~~~---~p-v~-~~CgH~fC~~Ci~ 97 (156)
....|.+|...|. +. .. ..|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 4578999998873 11 12 3688888888853
No 134
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.33 E-value=5.6 Score=23.57 Aligned_cols=36 Identities=28% Similarity=0.501 Sum_probs=20.0
Q ss_pred ccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCc
Q psy2479 71 DCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLA 114 (156)
Q Consensus 71 ~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 114 (156)
.|+.|.+.+....+..-+..||..| +.|-.|+.+|.
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 17 RCARCSKTLTQGGVTYRDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp CCTTTCCCCCSCCEESSSSEECTTT--------CBCSSSCCBCT
T ss_pred cCCCCCCEecCcEEEECCchhhhhh--------CCcccCCCcCC
Confidence 4666666555444444555555555 35666666654
No 135
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=55.43 E-value=4.5 Score=23.82 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=30.7
Q ss_pred cccccccccccccc-cEEcccCCcchH-HhHHHHhcCCCCCcccccCC
Q psy2479 68 SDFDCILCRSTIWK-PVTTPCGHSYCW-MCLDRCLDYSSSCPLCKTSL 113 (156)
Q Consensus 68 ~~~~C~IC~~~~~~-pv~~~CgH~fC~-~Ci~~~~~~~~~CP~Cr~~~ 113 (156)
+-+.|..|...+.. +....=|..||. .|..+.+ ...|..|...+
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f--~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF--GPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS--SCCCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHh--CccCCCcCCce
Confidence 45788899888776 344556778998 5886554 45788887554
No 136
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.87 E-value=4.6 Score=23.98 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=21.4
Q ss_pred ccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCcC
Q psy2479 71 DCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLAD 115 (156)
Q Consensus 71 ~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 115 (156)
.|+.|.+.+.+..+..-+..|+..| +.|..|+.+|..
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 17 KCGGCNRPVLENYLSAMDTVWHPEC--------FVCGDCFTSFST 53 (80)
T ss_dssp BCTTTCCBCCSSCEEETTEEECTTT--------CBCSSSCCBSCS
T ss_pred ccccCCCeecceeEEECCCeEecCc--------CChhhCCCCCCC
Confidence 5666666665544444455555555 456677666654
No 137
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=54.86 E-value=0.44 Score=29.57 Aligned_cols=10 Identities=20% Similarity=0.899 Sum_probs=5.1
Q ss_pred cccccccccc
Q psy2479 70 FDCILCRSTI 79 (156)
Q Consensus 70 ~~C~IC~~~~ 79 (156)
..||.|...+
T Consensus 3 ~~CP~C~~~l 12 (81)
T 2jrp_A 3 ITCPVCHHAL 12 (81)
T ss_dssp CCCSSSCSCC
T ss_pred CCCCCCCCcc
Confidence 3456665443
No 138
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=54.79 E-value=18 Score=21.36 Aligned_cols=44 Identities=20% Similarity=0.566 Sum_probs=28.7
Q ss_pred CcccccccccccccccEEc--c--cC-CcchHHhHHHHhcC----CCCCcccccCC
Q psy2479 67 SSDFDCILCRSTIWKPVTT--P--CG-HSYCWMCLDRCLDY----SSSCPLCKTSL 113 (156)
Q Consensus 67 ~~~~~C~IC~~~~~~pv~~--~--Cg-H~fC~~Ci~~~~~~----~~~CP~Cr~~~ 113 (156)
.+...| ||.......++. . |. .-||..|+. +.. ...||.|...-
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 345678 898865444332 3 65 579999986 322 46899997644
No 139
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.09 E-value=4.7 Score=24.16 Aligned_cols=44 Identities=18% Similarity=0.392 Sum_probs=29.1
Q ss_pred ccccccccccccccEEc---ccCCcchHHhHHHH---------hcCCCCCcccccCC
Q psy2479 69 DFDCILCRSTIWKPVTT---PCGHSYCWMCLDRC---------LDYSSSCPLCKTSL 113 (156)
Q Consensus 69 ~~~C~IC~~~~~~pv~~---~CgH~fC~~Ci~~~---------~~~~~~CP~Cr~~~ 113 (156)
...| ||.........+ .|..=||..|+.-. ......||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4667 898877653344 57777999998311 12368899996543
No 140
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=53.78 E-value=3.9 Score=25.47 Aligned_cols=46 Identities=20% Similarity=0.401 Sum_probs=33.9
Q ss_pred ccccccccccccccc-EEcccCCcchHHhHHHHhcCCCCCcccccCCcC
Q psy2479 68 SDFDCILCRSTIWKP-VTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLAD 115 (156)
Q Consensus 68 ~~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 115 (156)
+-+.|..|...+... ....=|..||..|..+. ....|..|+.+|..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRE--DSPKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC--CCCBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhh--cCCccccCCCcccc
Confidence 347888998888654 34456788999997433 35789999999874
No 141
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.43 E-value=16 Score=22.15 Aligned_cols=39 Identities=18% Similarity=0.491 Sum_probs=20.4
Q ss_pred ccccccccccccc-cEEcccCCcchHHhHHHHhcCCCCCcccccCCcC
Q psy2479 69 DFDCILCRSTIWK-PVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLAD 115 (156)
Q Consensus 69 ~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 115 (156)
...|.-|.+.+.. ..+..-+..||..| +.|-.|+.+|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVFHISC--------FRCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEEETTT--------CBCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeEEECCCEECCCC--------CeeCCCCCCCCC
Confidence 3456666665543 23334555555555 346666555544
No 142
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=52.94 E-value=1.3 Score=27.41 Aligned_cols=29 Identities=24% Similarity=0.602 Sum_probs=20.1
Q ss_pred ccccccccccc-----cEEcc-cCCcchHHhHHHH
Q psy2479 71 DCILCRSTIWK-----PVTTP-CGHSYCWMCLDRC 99 (156)
Q Consensus 71 ~C~IC~~~~~~-----pv~~~-CgH~fC~~Ci~~~ 99 (156)
-||-|...+.. .+.-+ ||+.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 37767664432 24445 9999999998777
No 143
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=52.05 E-value=5.8 Score=22.63 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=21.8
Q ss_pred cccccccccc--ccEEcccCCcch--HHhHHHHhcCCCCCcccccCCcCC
Q psy2479 71 DCILCRSTIW--KPVTTPCGHSYC--WMCLDRCLDYSSSCPLCKTSLADV 116 (156)
Q Consensus 71 ~C~IC~~~~~--~pv~~~CgH~fC--~~Ci~~~~~~~~~CP~Cr~~~~~~ 116 (156)
.|+-|.+.+. +.++..-|..|| ..| +.|-.|+.+|...
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~C--------F~C~~C~~~L~~~ 45 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTEC--------FLCSCCSKCLIGQ 45 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTT--------SBCTTTCCBCTTS
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCC--------EECCCCCCcCCCC
Confidence 4666666665 334445565666 555 4566676666443
No 144
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.40 E-value=1.7 Score=24.55 Aligned_cols=41 Identities=29% Similarity=0.634 Sum_probs=26.5
Q ss_pred cccccccccccccccEEc--ccCCcchHHhHHHHhcC----CCCCcccc
Q psy2479 68 SDFDCILCRSTIWKPVTT--PCGHSYCWMCLDRCLDY----SSSCPLCK 110 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~~--~CgH~fC~~Ci~~~~~~----~~~CP~Cr 110 (156)
.+..|.+|... ..++. .|...||..|+..-+.. .-.||.|.
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 8 HEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SCCSCSSSCCS--SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCccCCCC--CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 45679999874 22222 68888999998754443 23577774
No 145
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.92 E-value=9.4 Score=22.68 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=24.9
Q ss_pred ccccccccccc--ccEEcccCCcchHHhHHHHhcCCCCCcccccCCcCC
Q psy2479 70 FDCILCRSTIW--KPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADV 116 (156)
Q Consensus 70 ~~C~IC~~~~~--~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 116 (156)
..|..|...+. ..++..-+..||..| +.|-.|+.+|...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFYEDRHFHEGC--------FRCCRCQRSLADE 56 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCCSSCCCBTTT--------SBCTTTCCBCSSC
T ss_pred CcCccCCCccccCcEEEEeCCccccccC--------CeecCCCCccCCC
Confidence 36777877776 334444566666666 4677887777543
No 146
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=50.42 E-value=6.5 Score=23.08 Aligned_cols=39 Identities=28% Similarity=0.518 Sum_probs=27.6
Q ss_pred cccccccccccc-----cEEcccCCcchHHhHHHHhcCCCCCcccccCCcCC
Q psy2479 70 FDCILCRSTIWK-----PVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADV 116 (156)
Q Consensus 70 ~~C~IC~~~~~~-----pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 116 (156)
..|+-|.+.+.. .++..-+..||..| +.|-.|+.+|...
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 59 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYC--------FHCKKCSVNLANK 59 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTT--------CBCSSSCCBCTTS
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCccc--------CEehhcCCCCCCC
Confidence 468888887774 44555666777777 5788888887654
No 147
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=49.36 E-value=6.6 Score=24.57 Aligned_cols=46 Identities=24% Similarity=0.457 Sum_probs=31.3
Q ss_pred CCCcccccccccccccccEEc--ccCCcchHHhHHHHhcC----CCCCcccccC
Q psy2479 65 ADSSDFDCILCRSTIWKPVTT--PCGHSYCWMCLDRCLDY----SSSCPLCKTS 112 (156)
Q Consensus 65 ~~~~~~~C~IC~~~~~~pv~~--~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~ 112 (156)
.......|.+|...= .+.. .|-..|+..|+.+-+.. .-.||.|...
T Consensus 21 ~d~n~~~C~vC~~~g--~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKPG--DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSSS--CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCCC--CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 344566899998642 2222 68888999999776654 3479999643
No 148
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=49.22 E-value=8.7 Score=33.45 Aligned_cols=48 Identities=27% Similarity=0.657 Sum_probs=37.1
Q ss_pred CCcccccccccccccccEE----------cccCCcc--------------------hHHhHHHHhcC--------CCCCc
Q psy2479 66 DSSDFDCILCRSTIWKPVT----------TPCGHSY--------------------CWMCLDRCLDY--------SSSCP 107 (156)
Q Consensus 66 ~~~~~~C~IC~~~~~~pv~----------~~CgH~f--------------------C~~Ci~~~~~~--------~~~CP 107 (156)
..+.-.|+-|+..+.+|.- +.||..| |..|..++-.. ...||
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~ 182 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACP 182 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCc
Confidence 3567799999999888721 4788666 99999988754 35899
Q ss_pred ccccCC
Q psy2479 108 LCKTSL 113 (156)
Q Consensus 108 ~Cr~~~ 113 (156)
.|+-.+
T Consensus 183 ~CGP~l 188 (772)
T 4g9i_A 183 VCGPSY 188 (772)
T ss_dssp TTSCCE
T ss_pred cCCceE
Confidence 998765
No 149
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.07 E-value=2.5 Score=26.63 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=29.3
Q ss_pred CCccccccccccccccc-EEc--ccCCcchHHhHHHHhcC----CCCCccccc
Q psy2479 66 DSSDFDCILCRSTIWKP-VTT--PCGHSYCWMCLDRCLDY----SSSCPLCKT 111 (156)
Q Consensus 66 ~~~~~~C~IC~~~~~~p-v~~--~CgH~fC~~Ci~~~~~~----~~~CP~Cr~ 111 (156)
..+...|.||...-... +++ .|...||..|+.+-+.. .-.||.|..
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 34456799998754322 232 68888888998654433 346888843
No 150
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=46.82 E-value=7.9 Score=25.21 Aligned_cols=43 Identities=9% Similarity=0.050 Sum_probs=25.7
Q ss_pred ccccccccccccc-c-cEEcccCCcchHHhHHHHhcCCCCCcccccC
Q psy2479 68 SDFDCILCRSTIW-K-PVTTPCGHSYCWMCLDRCLDYSSSCPLCKTS 112 (156)
Q Consensus 68 ~~~~C~IC~~~~~-~-pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~ 112 (156)
.-+.|..|...+. . .....=|..||..|..+.+. ..|..+...
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~--~~~~~~~~~ 79 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK--INGGSGGSG 79 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH--HHTCCCCCC
T ss_pred ccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc--cccCCCCCC
Confidence 3467777877773 2 24445577788888766653 334555443
No 151
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=46.38 E-value=2.2 Score=24.67 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=29.0
Q ss_pred cccccccccccccc-cEEc---ccCCcchHHhHHHHhc-----CCCCCcccccC
Q psy2479 68 SDFDCILCRSTIWK-PVTT---PCGHSYCWMCLDRCLD-----YSSSCPLCKTS 112 (156)
Q Consensus 68 ~~~~C~IC~~~~~~-pv~~---~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~ 112 (156)
+...|++|...+.+ ...+ .|..=||..|+.-... ....||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45679999987743 2233 5766788888743221 25789998653
No 152
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=45.88 E-value=9.5 Score=22.97 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=29.3
Q ss_pred CcccccccccccccccEEc-----ccCCcchHHhHHHHhc---------CCCCCcccccC
Q psy2479 67 SSDFDCILCRSTIWKPVTT-----PCGHSYCWMCLDRCLD---------YSSSCPLCKTS 112 (156)
Q Consensus 67 ~~~~~C~IC~~~~~~pv~~-----~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~ 112 (156)
.+.+.| ||........++ .|..=||..|+.-... ....||.|+..
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 356778 898875444444 4666799999842211 25789999654
No 153
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=45.77 E-value=4.3 Score=28.62 Aligned_cols=43 Identities=16% Similarity=0.419 Sum_probs=28.5
Q ss_pred ccccccccccccccEEc--ccCCcchHHhHHHHhcC----CCCCcccccCC
Q psy2479 69 DFDCILCRSTIWKPVTT--PCGHSYCWMCLDRCLDY----SSSCPLCKTSL 113 (156)
Q Consensus 69 ~~~C~IC~~~~~~pv~~--~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 113 (156)
+..|.+|... ..+.. .|...||..|+.+.+.. .-.||.|+..-
T Consensus 4 ~~~C~~C~~~--g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG--GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC--SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC--CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4569999853 11222 58888999998665543 35799997643
No 154
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.97 E-value=7.5 Score=22.76 Aligned_cols=40 Identities=18% Similarity=0.439 Sum_probs=24.1
Q ss_pred cccccccccccc--ccEEcccCCcchHHhHHHHhcCCCCCcccccCCcCC
Q psy2479 69 DFDCILCRSTIW--KPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADV 116 (156)
Q Consensus 69 ~~~C~IC~~~~~--~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 116 (156)
...|+-|.+.+. +.++..-|..||..| +.|-.|+.+|...
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSNGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEETTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEEEeCccEecccc--------CeECCCCCCCCCC
Confidence 346777777664 334445565666666 4677777766543
No 155
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=44.86 E-value=13 Score=23.70 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=25.6
Q ss_pred cccccccccccccc---cEEcccCCcchHHhHHHHhcC
Q psy2479 68 SDFDCILCRSTIWK---PVTTPCGHSYCWMCLDRCLDY 102 (156)
Q Consensus 68 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~ 102 (156)
+-+.|..|...+.+ .....=|..||..|..+.+..
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS
T ss_pred hcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCc
Confidence 44788899888864 344556778999998777654
No 156
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.69 E-value=12 Score=22.43 Aligned_cols=42 Identities=24% Similarity=0.457 Sum_probs=28.6
Q ss_pred cccccccccccccc-EEcccCCcchHHhHHHHhcCCCCCcccccCCcCCCc
Q psy2479 69 DFDCILCRSTIWKP-VTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGI 118 (156)
Q Consensus 69 ~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 118 (156)
...|..|.+.+... .+..-+..||..| +.|-.|+.+|.....
T Consensus 15 ~~~C~~C~~~I~~~e~v~a~~~~wH~~C--------F~C~~C~~~L~~~~~ 57 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCVNGHFFHRSC--------FRCHTCEATLWPGGY 57 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCBTTBCCBTTT--------CBCSSSCCBCCTTSE
T ss_pred CCCCcccCCCcccceEEEECCCeeCCCc--------CEEcCCCCCcCCCce
Confidence 45799998877543 3345566777777 578888887765543
No 157
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=43.88 E-value=18 Score=22.61 Aligned_cols=45 Identities=18% Similarity=0.475 Sum_probs=28.2
Q ss_pred CcccccccccccccccEEc---c--cC-CcchHHhHHHHhc--CCCCCcccccCC
Q psy2479 67 SSDFDCILCRSTIWKPVTT---P--CG-HSYCWMCLDRCLD--YSSSCPLCKTSL 113 (156)
Q Consensus 67 ~~~~~C~IC~~~~~~pv~~---~--Cg-H~fC~~Ci~~~~~--~~~~CP~Cr~~~ 113 (156)
.+...| ||....... ++ . |. .-||..|+.-... ....||.|+...
T Consensus 34 ~e~~yC-iC~~~~~g~-MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCCSC-CCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCCCC-EeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 455677 998865543 33 3 55 4699999851111 146899997643
No 158
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.59 E-value=24 Score=20.17 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=18.1
Q ss_pred cccccccccccccc-EEcccCCcchHHhHHHHhc
Q psy2479 69 DFDCILCRSTIWKP-VTTPCGHSYCWMCLDRCLD 101 (156)
Q Consensus 69 ~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~ 101 (156)
-+.|..|...+... ....=|..||..|..+.+.
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 33 CFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 35566666655432 3334556666666655553
No 159
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=43.57 E-value=9.2 Score=21.85 Aligned_cols=40 Identities=18% Similarity=0.432 Sum_probs=26.3
Q ss_pred cccccccccccccc--EEcccCCcchHHhHHHHhcCCCCCcccccCCcCC
Q psy2479 69 DFDCILCRSTIWKP--VTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADV 116 (156)
Q Consensus 69 ~~~C~IC~~~~~~p--v~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 116 (156)
...|.-|...+... ++..-|..|+..| +.|-.|+.++...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~~~~~~H~~C--------F~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNSNGELYHEQC--------FVCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEETTEEEETTT--------SSCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEeCcCeeCcCC--------CcccCCCCCCCCC
Confidence 34688888877643 4445566666666 4688888777554
No 160
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.44 E-value=15 Score=21.93 Aligned_cols=40 Identities=18% Similarity=0.393 Sum_probs=26.2
Q ss_pred cccccccccccccc-cEEcccCCcchHHhHHHHhcCCCCCcccccCCcC
Q psy2479 68 SDFDCILCRSTIWK-PVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLAD 115 (156)
Q Consensus 68 ~~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 115 (156)
....|+-|.+.+.. ..+..-+..||..| +.|-.|+.+|..
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~~ 54 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLALDKQWHVSC--------FKCQTCSVILTG 54 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEETTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCcCcCCeeCCCeEEEECCccccccc--------CCcCcCCCCcCC
Confidence 34578888887753 33444566666666 568888887753
No 161
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=43.29 E-value=25 Score=18.48 Aligned_cols=37 Identities=14% Similarity=0.350 Sum_probs=23.4
Q ss_pred cccccccccccccccEEcccCCcchHHhHHHHhc------CCCCCcccccCCcC
Q psy2479 68 SDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLD------YSSSCPLCKTSLAD 115 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~~ 115 (156)
..+.|.+|...|... .-+..... ....|+.|.+.|..
T Consensus 11 k~~~C~~C~k~f~~~-----------~~L~~H~~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 11 KPYICQSCGKGFSRP-----------DHLNGHIKQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp CCEECSSSCCEESSH-----------HHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred CCeECCCCCcccCCH-----------HHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence 347899988877664 22222211 24689999988764
No 162
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=43.27 E-value=4.6 Score=28.77 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=30.0
Q ss_pred cccccccccccccE----Ec---ccCCcchHHhHHHH------hc-----CCCCCcccccCC
Q psy2479 70 FDCILCRSTIWKPV----TT---PCGHSYCWMCLDRC------LD-----YSSSCPLCKTSL 113 (156)
Q Consensus 70 ~~C~IC~~~~~~pv----~~---~CgH~fC~~Ci~~~------~~-----~~~~CP~Cr~~~ 113 (156)
..||||...+.+.. .+ .|..-||..|+.-. +. ....||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 46999999887652 44 57777888887321 11 157999997654
No 163
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=42.30 E-value=13 Score=31.73 Aligned_cols=49 Identities=27% Similarity=0.541 Sum_probs=36.9
Q ss_pred CCCcccccccccccccccE-------E---cccCCcc--------------------hHHhHHHHhcC--------CCCC
Q psy2479 65 ADSSDFDCILCRSTIWKPV-------T---TPCGHSY--------------------CWMCLDRCLDY--------SSSC 106 (156)
Q Consensus 65 ~~~~~~~C~IC~~~~~~pv-------~---~~CgH~f--------------------C~~Ci~~~~~~--------~~~C 106 (156)
...+.-.|+-|+..+.+|. + +.||..| |..|..++-.. ...|
T Consensus 13 i~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aC 92 (657)
T 3ttc_A 13 IVPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVAC 92 (657)
T ss_dssp CCCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCC
T ss_pred cCCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcC
Confidence 3455678999999888762 1 4677665 99999988764 4699
Q ss_pred cccccCC
Q psy2479 107 PLCKTSL 113 (156)
Q Consensus 107 P~Cr~~~ 113 (156)
|.|+-.+
T Consensus 93 p~CGP~l 99 (657)
T 3ttc_A 93 PECGPYL 99 (657)
T ss_dssp TTTSCCE
T ss_pred cccCccc
Confidence 9998776
No 164
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=41.82 E-value=9.6 Score=22.66 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=29.4
Q ss_pred CCcccccccccccc---cccEEc--ccCCcchHHhHHHHhcC--CCCCccccc
Q psy2479 66 DSSDFDCILCRSTI---WKPVTT--PCGHSYCWMCLDRCLDY--SSSCPLCKT 111 (156)
Q Consensus 66 ~~~~~~C~IC~~~~---~~pv~~--~CgH~fC~~Ci~~~~~~--~~~CP~Cr~ 111 (156)
..+...|.||...- .+.+++ .|.-.|+..|+...... .-.||.|..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34567899998753 223333 68889999998643322 356777743
No 165
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=41.29 E-value=6.8 Score=28.15 Aligned_cols=44 Identities=16% Similarity=0.348 Sum_probs=29.3
Q ss_pred cccccccccccccccEEc--ccCCcchHHhHHHHhcC----CCCCcccccCC
Q psy2479 68 SDFDCILCRSTIWKPVTT--PCGHSYCWMCLDRCLDY----SSSCPLCKTSL 113 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~~--~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 113 (156)
.+..|.+|...= .+.. .|...||..|+.+.+.. .-.||.|+..-
T Consensus 6 ~~~~C~~C~~~g--~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGG--DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCE--EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC--ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 345699998531 1222 58888999998765543 35899997643
No 166
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=41.22 E-value=3.8 Score=23.39 Aligned_cols=41 Identities=29% Similarity=0.636 Sum_probs=26.0
Q ss_pred ccccccccccccccEEc--ccCCcchHHhHHHHhcC----CCCCccccc
Q psy2479 69 DFDCILCRSTIWKPVTT--PCGHSYCWMCLDRCLDY----SSSCPLCKT 111 (156)
Q Consensus 69 ~~~C~IC~~~~~~pv~~--~CgH~fC~~Ci~~~~~~----~~~CP~Cr~ 111 (156)
+..|.+|... ..++. .|...|+..|+.+-+.. .-.||.|..
T Consensus 5 ~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 5 EDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CSSCTTTCCC--SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCcCCCCC--CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 4568888863 22222 68888899998754433 346777743
No 167
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=40.85 E-value=21 Score=30.97 Aligned_cols=50 Identities=26% Similarity=0.452 Sum_probs=37.3
Q ss_pred CCCcccccccccccccccE-------E---cccCCcc--------------------hHHhHHHHhcC--------CCCC
Q psy2479 65 ADSSDFDCILCRSTIWKPV-------T---TPCGHSY--------------------CWMCLDRCLDY--------SSSC 106 (156)
Q Consensus 65 ~~~~~~~C~IC~~~~~~pv-------~---~~CgH~f--------------------C~~Ci~~~~~~--------~~~C 106 (156)
...+.-.|+-|+..+.+|. + +.||..| |..|..++-.. ...|
T Consensus 107 i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC 186 (761)
T 3vth_A 107 VSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVAC 186 (761)
T ss_dssp CCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCC
T ss_pred cCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcC
Confidence 3456679999999988872 1 4677554 99999998764 3589
Q ss_pred cccccCCc
Q psy2479 107 PLCKTSLA 114 (156)
Q Consensus 107 P~Cr~~~~ 114 (156)
|.|+-.+.
T Consensus 187 ~~CGP~l~ 194 (761)
T 3vth_A 187 FDCGPSLS 194 (761)
T ss_dssp TTTSCCEE
T ss_pred CccCCeeE
Confidence 99987663
No 168
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=38.32 E-value=9.8 Score=26.26 Aligned_cols=43 Identities=16% Similarity=0.366 Sum_probs=27.4
Q ss_pred ccccccccccccc---cc-EE-cccCCcchHHhHHHHhcC--CCCCccccc
Q psy2479 68 SDFDCILCRSTIW---KP-VT-TPCGHSYCWMCLDRCLDY--SSSCPLCKT 111 (156)
Q Consensus 68 ~~~~C~IC~~~~~---~p-v~-~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~ 111 (156)
....|.+|...|. +. +. ..|.|.+|..|-. |... .-.|-+|++
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 4678999998753 22 22 3799999999962 2221 345666643
No 169
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=37.48 E-value=22 Score=23.23 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=28.5
Q ss_pred cccccccccccccc-EEcccCCcchHHhHHHHhcCCCCCcccccCCc
Q psy2479 69 DFDCILCRSTIWKP-VTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLA 114 (156)
Q Consensus 69 ~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 114 (156)
...|+-|.+.+.+. ++..-|..||..|+ .|-.|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEccccc--------CcCcCCCccc
Confidence 46799999888776 35567777888886 4788888775
No 170
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=36.98 E-value=11 Score=17.86 Aligned_cols=12 Identities=25% Similarity=0.958 Sum_probs=6.7
Q ss_pred CCCcccccCCcC
Q psy2479 104 SSCPLCKTSLAD 115 (156)
Q Consensus 104 ~~CP~Cr~~~~~ 115 (156)
..||+|......
T Consensus 7 vqcpvcqq~mpa 18 (29)
T 3vhs_A 7 VQCPVCQQMMPA 18 (29)
T ss_dssp EECTTTCCEEEG
T ss_pred eeChHHHHhCcH
Confidence 357777655433
No 171
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.33 E-value=11 Score=21.07 Aligned_cols=38 Identities=13% Similarity=0.284 Sum_probs=24.2
Q ss_pred cccccccccccccccEEcccCCcchHHhHHHHhcCCCCCcccccCCcCCCc
Q psy2479 68 SDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGI 118 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 118 (156)
..+.|.+|...|.....+.- .....|+.|...+.....
T Consensus 17 ~~~~C~~C~k~f~~~~~l~~-------------~~~~~C~~C~~~f~~~~~ 54 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTLSR-------------RKTPMCEKCRKDSCQEAA 54 (73)
T ss_dssp SEEECSSSCCEEECCCCCCC-------------SSSCCCHHHHHTCSCCCS
T ss_pred CCeeCCcccchhCCHHHhCc-------------CCCCCCCCCChhhcCHHH
Confidence 35789999988876543322 334677777776655444
No 172
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=35.92 E-value=7.7 Score=21.32 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=14.7
Q ss_pred ccCCcchHHhHHHHhcCCCCCcccccCC
Q psy2479 86 PCGHSYCWMCLDRCLDYSSSCPLCKTSL 113 (156)
Q Consensus 86 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 113 (156)
.||++|-..=+. ....-.||.|+..+
T Consensus 8 rCg~~fs~~el~--~lP~IrCpyCGyri 33 (48)
T 4ayb_P 8 KCWKTFTDEQLK--VLPGVRCPYCGYKI 33 (48)
T ss_dssp CTTTTCCCCCSC--CCSSSCCTTTCCSC
T ss_pred ccCCCccHHHHh--hCCCcccCccCcEE
Confidence 566666433211 11246899998765
No 173
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=35.77 E-value=7.3 Score=19.80 Aligned_cols=15 Identities=27% Similarity=0.753 Sum_probs=11.4
Q ss_pred cccCCcchHHhHHHH
Q psy2479 85 TPCGHSYCWMCLDRC 99 (156)
Q Consensus 85 ~~CgH~fC~~Ci~~~ 99 (156)
.+|.|++|..|--+.
T Consensus 10 ascehtmcgycqgpl 24 (40)
T 1erd_A 10 ASCEHTMCGYCQGPL 24 (40)
T ss_dssp HHTCGGGGGGSCHHH
T ss_pred HhccccccccccCCe
Confidence 479999999885443
No 174
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=35.66 E-value=5.1 Score=23.37 Aligned_cols=43 Identities=21% Similarity=0.564 Sum_probs=27.3
Q ss_pred cccccccccccccccEEc--ccCCcchHHhHHHHhcC----CCCCcccccC
Q psy2479 68 SDFDCILCRSTIWKPVTT--PCGHSYCWMCLDRCLDY----SSSCPLCKTS 112 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~~--~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~ 112 (156)
.+..|.||... ..++. .|...||..|+..-+.. .-.||.|...
T Consensus 7 ~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG--GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC--SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC--CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 35679999863 22222 67778888998754433 3468888543
No 175
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=35.08 E-value=32 Score=20.74 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=26.0
Q ss_pred CcccccccccccccccEEcccCCcchHHhHHHHhc-----CCCCCcccccCCcCCCc
Q psy2479 67 SSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLD-----YSSSCPLCKTSLADVGI 118 (156)
Q Consensus 67 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~~~~ 118 (156)
.....|++|...|.... -+..... ....|+.|.+.|.....
T Consensus 26 ~~~h~C~~Cgk~F~~~~-----------~L~~H~~~H~~~k~~~C~~C~k~F~~~~~ 71 (85)
T 2lv2_A 26 AECHLCPVCGESFASKG-----------AQERHLRLLHAAQVFPCKYCPATFYSSPG 71 (85)
T ss_dssp CTTEECTTSCCEESSHH-----------HHHHHHHTTSCSSSEECTTSSCEESSHHH
T ss_pred CCCEECCCCCCCcCcHH-----------HHhhhhhhccCCCccCCCCCCCEeCCHHH
Confidence 34578999988887742 2222221 14689999988866544
No 176
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=34.89 E-value=39 Score=22.52 Aligned_cols=44 Identities=23% Similarity=0.471 Sum_probs=27.4
Q ss_pred cccccccccccccccEEcccCCcchHHhHHHHh-----------cCCCCCccccc
Q psy2479 68 SDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCL-----------DYSSSCPLCKT 111 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~ 111 (156)
.+..|.+|.+-=.-.-=-.|-..||..|+...+ ...-.|+.|+.
T Consensus 56 ~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345688887531100001688899999998652 12368999954
No 177
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=34.62 E-value=18 Score=22.47 Aligned_cols=37 Identities=19% Similarity=0.459 Sum_probs=24.5
Q ss_pred ccccccccccccc--cEEcccCCcchHHhHHHHhcCCCCCcc
Q psy2479 69 DFDCILCRSTIWK--PVTTPCGHSYCWMCLDRCLDYSSSCPL 108 (156)
Q Consensus 69 ~~~C~IC~~~~~~--pv~~~CgH~fC~~Ci~~~~~~~~~CP~ 108 (156)
...|..|..-+.- +..=.||.+||..= .+.....|+.
T Consensus 25 ~~rC~~C~kkvgl~~~f~CrCg~~FC~~H---Ry~e~H~C~f 63 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFECRCGNNFCASH---RYAEAHGCNY 63 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECTTCCEECTTT---CSTGGGTCCS
T ss_pred CccchhhCCeecccCCeEcCCCCEecccC---CCccCCCCcc
Confidence 4689999875543 66668999999763 2222345654
No 178
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.27 E-value=14 Score=23.62 Aligned_cols=12 Identities=42% Similarity=1.140 Sum_probs=7.6
Q ss_pred CCCcccccCCcC
Q psy2479 104 SSCPLCKTSLAD 115 (156)
Q Consensus 104 ~~CP~Cr~~~~~ 115 (156)
..||+|+.++..
T Consensus 48 ~~CPvCgs~l~~ 59 (112)
T 1l8d_A 48 GKCPVCGRELTD 59 (112)
T ss_dssp EECTTTCCEECH
T ss_pred CCCCCCCCcCCH
Confidence 357777766653
No 179
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=33.78 E-value=5.8 Score=23.40 Aligned_cols=44 Identities=14% Similarity=0.267 Sum_probs=26.8
Q ss_pred CcccccccccccccccEEc---ccCCcchHHhHHHHhc---CCCCCccccc
Q psy2479 67 SSDFDCILCRSTIWKPVTT---PCGHSYCWMCLDRCLD---YSSSCPLCKT 111 (156)
Q Consensus 67 ~~~~~C~IC~~~~~~pv~~---~CgH~fC~~Ci~~~~~---~~~~CP~Cr~ 111 (156)
.+.+.| ||.........+ .|..=|+..|+.-... ....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345678 888776654344 4666677888742221 2467888754
No 180
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=33.58 E-value=8.1 Score=22.96 Aligned_cols=30 Identities=27% Similarity=0.648 Sum_probs=14.8
Q ss_pred ccccccccccccc-EEcccCCcchHHhHHHH
Q psy2479 70 FDCILCRSTIWKP-VTTPCGHSYCWMCLDRC 99 (156)
Q Consensus 70 ~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~ 99 (156)
+.|..|...+... ....=|..||..|..+.
T Consensus 35 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 65 (81)
T 1a7i_A 35 FLCMVCRKNLDSTTVAIHDAEVYCKSCYGKK 65 (81)
T ss_dssp EECSSSCCEECSSCCEEETTEEECSHHHHHH
T ss_pred CccCCCCCCCCCCCeEeeCCEEECHHHHHHH
Confidence 5556665555443 22234445666665443
No 181
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=33.53 E-value=68 Score=25.51 Aligned_cols=28 Identities=32% Similarity=0.773 Sum_probs=22.0
Q ss_pred ccCCcchHHhHHHHhcC----------CCCCcccccCC
Q psy2479 86 PCGHSYCWMCLDRCLDY----------SSSCPLCKTSL 113 (156)
Q Consensus 86 ~CgH~fC~~Ci~~~~~~----------~~~CP~Cr~~~ 113 (156)
.|...||..||...+.. .-.|=+|.-.-
T Consensus 112 ~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 112 DCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp TCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred CCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 78899999999888843 34899997554
No 182
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=33.52 E-value=5.9 Score=24.06 Aligned_cols=41 Identities=27% Similarity=0.570 Sum_probs=26.1
Q ss_pred ccccccccccccEEc---ccCCcchHHhHHHHhcC----C-CCCccccc
Q psy2479 71 DCILCRSTIWKPVTT---PCGHSYCWMCLDRCLDY----S-SSCPLCKT 111 (156)
Q Consensus 71 ~C~IC~~~~~~pv~~---~CgH~fC~~Ci~~~~~~----~-~~CP~Cr~ 111 (156)
.|.+|...-....++ .|...||..|+.+.+.. . -.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 566776654333333 68888999998765544 2 46888853
No 183
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=33.40 E-value=18 Score=31.38 Aligned_cols=33 Identities=21% Similarity=0.592 Sum_probs=24.3
Q ss_pred ccccccccccccc----------EEcccCCcchHHhHHHHhcC
Q psy2479 70 FDCILCRSTIWKP----------VTTPCGHSYCWMCLDRCLDY 102 (156)
Q Consensus 70 ~~C~IC~~~~~~p----------v~~~CgH~fC~~Ci~~~~~~ 102 (156)
..||+|.--..+- ..++||-+||..|....++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~ 56 (776)
T 4gut_A 14 ATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRS 56 (776)
T ss_dssp CSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHST
T ss_pred ccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhcc
Confidence 4678887554331 56899999999999877654
No 184
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=33.38 E-value=14 Score=21.12 Aligned_cols=46 Identities=22% Similarity=0.491 Sum_probs=30.0
Q ss_pred ccccccccccccc---ccEEc--ccCCcchHHhHHHHhc-------CCCCCcccccCC
Q psy2479 68 SDFDCILCRSTIW---KPVTT--PCGHSYCWMCLDRCLD-------YSSSCPLCKTSL 113 (156)
Q Consensus 68 ~~~~C~IC~~~~~---~pv~~--~CgH~fC~~Ci~~~~~-------~~~~CP~Cr~~~ 113 (156)
++..|.||..... +.+++ .|...||..|+...+. ..-.|+.|....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 4567999987643 23333 6888899999875331 245788886543
No 185
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=33.31 E-value=8.6 Score=24.84 Aligned_cols=41 Identities=22% Similarity=0.512 Sum_probs=26.5
Q ss_pred ccccccccccc--cEEc--ccCCcchHHhHHHHhcC----CCCCccccc
Q psy2479 71 DCILCRSTIWK--PVTT--PCGHSYCWMCLDRCLDY----SSSCPLCKT 111 (156)
Q Consensus 71 ~C~IC~~~~~~--pv~~--~CgH~fC~~Ci~~~~~~----~~~CP~Cr~ 111 (156)
.|.+|...-.+ .++. .|...||..|+.+-+.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 57788764322 2222 68888999998765544 347888864
No 186
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=33.30 E-value=45 Score=20.03 Aligned_cols=26 Identities=23% Similarity=0.712 Sum_probs=18.9
Q ss_pred ccccccccccccc-cEEcccCCcchHH
Q psy2479 69 DFDCILCRSTIWK-PVTTPCGHSYCWM 94 (156)
Q Consensus 69 ~~~C~IC~~~~~~-pv~~~CgH~fC~~ 94 (156)
...|..|..-+.- +..=.||.+||..
T Consensus 25 ~nRC~~CrKkvgL~gf~CrCg~~FCs~ 51 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCRCGNLFCGL 51 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTSCEECSS
T ss_pred CCcChhhCCcccccCeecCCCCEechh
Confidence 4679999875432 4555799999875
No 187
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=32.63 E-value=17 Score=17.66 Aligned_cols=25 Identities=12% Similarity=0.393 Sum_probs=16.3
Q ss_pred ccccccccccccE-EcccCCcchHHh
Q psy2479 71 DCILCRSTIWKPV-TTPCGHSYCWMC 95 (156)
Q Consensus 71 ~C~IC~~~~~~pv-~~~CgH~fC~~C 95 (156)
.|+.|...+...- +..-|..||..|
T Consensus 5 ~C~~C~k~Vy~~Ek~~~~g~~~Hk~C 30 (31)
T 1zfo_A 5 NCARCGKIVYPTEKVNCLDKFWHKAC 30 (31)
T ss_dssp BCSSSCSBCCGGGCCCSSSSCCCGGG
T ss_pred cCCccCCEEecceeEEECCeEecccC
Confidence 5888887766542 334566777776
No 188
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=32.40 E-value=3 Score=19.27 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=8.1
Q ss_pred cchHHhHHHHhc
Q psy2479 90 SYCWMCLDRCLD 101 (156)
Q Consensus 90 ~fC~~Ci~~~~~ 101 (156)
.||..|-.+|+.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 377777776664
No 189
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=32.02 E-value=18 Score=25.29 Aligned_cols=10 Identities=30% Similarity=1.032 Sum_probs=7.3
Q ss_pred CCCCcccccC
Q psy2479 103 SSSCPLCKTS 112 (156)
Q Consensus 103 ~~~CP~Cr~~ 112 (156)
...||.|+.+
T Consensus 153 p~~CP~Cg~~ 162 (170)
T 3pwf_A 153 PEYCPVCGAP 162 (170)
T ss_dssp CSBCTTTCCB
T ss_pred CCCCCCCCCC
Confidence 3489999764
No 190
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=31.48 E-value=11 Score=26.82 Aligned_cols=41 Identities=22% Similarity=0.464 Sum_probs=25.4
Q ss_pred cccccccccccccEEc--ccCCcchHHhHHHHhcC----CCCCcccccC
Q psy2479 70 FDCILCRSTIWKPVTT--PCGHSYCWMCLDRCLDY----SSSCPLCKTS 112 (156)
Q Consensus 70 ~~C~IC~~~~~~pv~~--~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~ 112 (156)
..|.+|...= .... .|-..||..|+.+-+.. .-.||.|+..
T Consensus 3 ~~C~~C~~~g--~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPG--DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCS--SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCCC--ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3588887432 1111 57778888888655543 3478988654
No 191
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=30.87 E-value=21 Score=21.07 Aligned_cols=32 Identities=25% Similarity=0.490 Sum_probs=21.9
Q ss_pred ccccccccccccccEEccc-CCcchHHhHHHHhc
Q psy2479 69 DFDCILCRSTIWKPVTTPC-GHSYCWMCLDRCLD 101 (156)
Q Consensus 69 ~~~C~IC~~~~~~pv~~~C-gH~fC~~Ci~~~~~ 101 (156)
..-|-||.+.-. -.=+.| |-.||..|..+...
T Consensus 8 ~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 8 LPWCCICNEDAT-LRCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CSSCTTTCSCCC-EEETTTTSEEECSSHHHHHTT
T ss_pred CCeeEEeCCCCe-EEecCCCCceehHHHHHHHcc
Confidence 345999998622 112468 77899999887663
No 192
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=30.40 E-value=21 Score=18.77 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=22.9
Q ss_pred ccccccccccccccEEcccCCcchHHhHHHHh-cCCCCCcccccCCcCCCc
Q psy2479 69 DFDCILCRSTIWKPVTTPCGHSYCWMCLDRCL-DYSSSCPLCKTSLADVGI 118 (156)
Q Consensus 69 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~-~~~~~CP~Cr~~~~~~~~ 118 (156)
.+.|++|...|.....+. .| +.... .....|+.|...+.....
T Consensus 4 ~~~C~~C~~~f~~~~~l~-~H------~~~h~~~~~~~C~~C~~~f~~~~~ 47 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLN-IH------LRTHTGEKPYKCEFCEYAAAQKTS 47 (57)
T ss_dssp -CBCTTTCCBCSCHHHHH-HH------HHHHHCCCCEECSSSSCEESSHHH
T ss_pred CccCCCCcchhCChHHHH-HH------HHHcCCCCCcCCCCCcchhCCHHH
Confidence 367888888776642110 00 00011 224689999887755443
No 193
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=30.25 E-value=20 Score=23.28 Aligned_cols=11 Identities=18% Similarity=0.522 Sum_probs=8.4
Q ss_pred CC-CCcccccCC
Q psy2479 103 SS-SCPLCKTSL 113 (156)
Q Consensus 103 ~~-~CP~Cr~~~ 113 (156)
.. .||.|+.+.
T Consensus 89 ~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 89 DYGVCEKCHSKN 100 (119)
T ss_dssp TTCCCSSSSSCC
T ss_pred CCCcCccccCCC
Confidence 46 899998763
No 194
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.98 E-value=62 Score=18.09 Aligned_cols=40 Identities=13% Similarity=0.315 Sum_probs=24.5
Q ss_pred cccccccccccccccEEcccCCcchHHhHHHHhc-----CCCCCcccccCCcCCCc
Q psy2479 68 SDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLD-----YSSSCPLCKTSLADVGI 118 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~~~~ 118 (156)
..+.|.+|...|..... +..... ....|+.|...|.....
T Consensus 17 ~~~~C~~C~~~f~~~~~-----------l~~H~~~h~~~~~~~C~~C~~~f~~~~~ 61 (77)
T 2cot_A 17 RRYKCDECGKSFSHSSD-----------LSKHRRTHTGEKPYKCDECGKAFIQRSH 61 (77)
T ss_dssp CSSBCSSSCCBCSCHHH-----------HHHHHTTTCCSCSEECSSSCCEESSHHH
T ss_pred CCEECCCCCcccCCHHH-----------HHHHHHHcCCCcCeeCCCCCCccCCHHH
Confidence 45789999888876421 111111 14689999887755433
No 195
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=29.36 E-value=5.5 Score=25.61 Aligned_cols=41 Identities=20% Similarity=0.497 Sum_probs=26.2
Q ss_pred ccccccccccccEEc---ccCCcchHHhHHHHhcC----CCCCccccc
Q psy2479 71 DCILCRSTIWKPVTT---PCGHSYCWMCLDRCLDY----SSSCPLCKT 111 (156)
Q Consensus 71 ~C~IC~~~~~~pv~~---~CgH~fC~~Ci~~~~~~----~~~CP~Cr~ 111 (156)
.|.+|...-.+..++ .|...||..|+.+.+.. .-.||.|..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 466776654332233 68889999999765543 346887754
No 196
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=28.90 E-value=18 Score=20.27 Aligned_cols=39 Identities=28% Similarity=0.461 Sum_probs=23.9
Q ss_pred ccccccccccccccEEcccCCcchHHhHHHHh-----cCCCCCcccccCCcCCCc
Q psy2479 69 DFDCILCRSTIWKPVTTPCGHSYCWMCLDRCL-----DYSSSCPLCKTSLADVGI 118 (156)
Q Consensus 69 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~-----~~~~~CP~Cr~~~~~~~~ 118 (156)
-+.|.+|...|.... -+.... .....|+.|++.|.....
T Consensus 4 py~C~~C~k~F~~~~-----------~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~ 47 (60)
T 4gzn_C 4 PFFCNFCGKTYRDAS-----------GLSRHRRAHLGYRPRSCPECGKCFRDQSE 47 (60)
T ss_dssp CEECTTTCCEESSHH-----------HHHHHHHHHHTCCCEECTTTCCEESSHHH
T ss_pred CccCCCCCCEeCCHH-----------HHHHHHHHhCCCcCeECCCCCCCcCCHHH
Confidence 367888888776642 222111 125789999988866544
No 197
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=28.84 E-value=19 Score=25.73 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=22.2
Q ss_pred CcccccccccccccccEEcccCCcchHHhHH
Q psy2479 67 SSDFDCILCRSTIWKPVTTPCGHSYCWMCLD 97 (156)
Q Consensus 67 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~ 97 (156)
.....|++|.+.+.+. |...|..|..
T Consensus 161 ~~~~~C~~CGE~~~~~-----g~~~C~~C~~ 186 (191)
T 3d00_A 161 GKIVLCPQCREAYPAQ-----DGELCLSCQG 186 (191)
T ss_dssp CCEEECTTTCCEEEGG-----GCSSCHHHHT
T ss_pred cCCEECCcCCCChhhC-----CCcCCccccC
Confidence 4678899999998887 8899999964
No 198
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=28.20 E-value=10 Score=26.10 Aligned_cols=10 Identities=30% Similarity=0.943 Sum_probs=7.7
Q ss_pred CCCcccccCC
Q psy2479 104 SSCPLCKTSL 113 (156)
Q Consensus 104 ~~CP~Cr~~~ 113 (156)
..||.|+.++
T Consensus 149 ~~Cp~CG~~~ 158 (165)
T 2lcq_A 149 GVCPDCGSKV 158 (165)
T ss_dssp GBCTTTCCBE
T ss_pred CcCCCCCCcc
Confidence 4799998775
No 199
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=27.99 E-value=96 Score=18.36 Aligned_cols=14 Identities=29% Similarity=0.669 Sum_probs=10.4
Q ss_pred cccccccccccccc
Q psy2479 68 SDFDCILCRSTIWK 81 (156)
Q Consensus 68 ~~~~C~IC~~~~~~ 81 (156)
..+.|.+|...|..
T Consensus 16 ~~~~C~~C~~~f~~ 29 (106)
T 2ee8_A 16 KEFICKFCGRHFTK 29 (106)
T ss_dssp CCCBCSSSCCBCSS
T ss_pred cCeECCCCCCccCC
Confidence 45789999887754
No 200
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=27.92 E-value=55 Score=22.77 Aligned_cols=43 Identities=16% Similarity=0.320 Sum_probs=24.8
Q ss_pred ccccccccccccc-cEEcccCCcchHHhHHHHhcCCCCCcccccCC
Q psy2479 69 DFDCILCRSTIWK-PVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSL 113 (156)
Q Consensus 69 ~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 113 (156)
-+.|..|...+.. .....=|..||..|..+.+ ...|..|+...
T Consensus 142 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f--~~kc~~C~~~~ 185 (192)
T 1b8t_A 142 CFRCAKCGKSLESTTLADKDGEIYCKGCYAKNF--GPKGFGFGQGA 185 (192)
T ss_dssp TCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHT--CCCCCCCCCCC
T ss_pred cCCccccCCCCCCCcccccCCEEeCHHHHHHhc--CCcCCCCCCcc
Confidence 3566666666643 2333455667777776554 34566666553
No 201
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.91 E-value=24 Score=19.78 Aligned_cols=40 Identities=10% Similarity=0.302 Sum_probs=24.8
Q ss_pred cccccccccccccccEEcccCCcchHHhHHHHh-----cCCCCCcccccCCcCCCc
Q psy2479 68 SDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCL-----DYSSSCPLCKTSLADVGI 118 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~-----~~~~~CP~Cr~~~~~~~~ 118 (156)
..+.|.+|...|.....+ .... .....|+.|.+.|.....
T Consensus 13 k~~~C~~C~k~f~~~~~L-----------~~H~~~h~~~~~~~C~~C~~~f~~~~~ 57 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSIL-----------VQHQRVHTGEKPYKCLECGKAFSQNSG 57 (72)
T ss_dssp CCEECSSSCCEESSHHHH-----------HHHHHGGGCSCCEECSSSCCEESSHHH
T ss_pred CCccCCCCCCccCCHHHH-----------HHHHHhcCCCCCeECCCCCcccCCHHH
Confidence 357899998887764211 1111 124689999887765444
No 202
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=27.77 E-value=28 Score=18.48 Aligned_cols=38 Identities=21% Similarity=0.543 Sum_probs=21.8
Q ss_pred cccccccccccccEEcccCCcchHHhHHHHh-----cCCCCCcccccCCcCCCc
Q psy2479 70 FDCILCRSTIWKPVTTPCGHSYCWMCLDRCL-----DYSSSCPLCKTSLADVGI 118 (156)
Q Consensus 70 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~-----~~~~~CP~Cr~~~~~~~~ 118 (156)
+.|.+|...|..... +.... .....|+.|...+.....
T Consensus 3 ~~C~~C~~~f~~~~~-----------l~~H~~~h~~~~~~~C~~C~~~f~~~~~ 45 (60)
T 2adr_A 3 FVCEVCTRAFARQEH-----------LKRHYRSHTNEKPYPCGLCNRAFTRRDL 45 (60)
T ss_dssp BCCTTTCCCBSCHHH-----------HHHHHHTTTSSCSEECTTTCCEESSHHH
T ss_pred CcCCCCccccCCHHH-----------HHHHHHHhCCCCCccCCCCCCccCCHHH
Confidence 568888777765421 11111 114679999887755433
No 203
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=27.69 E-value=12 Score=22.06 Aligned_cols=41 Identities=27% Similarity=0.568 Sum_probs=25.9
Q ss_pred ccccccccccccEEc---ccCCcchHHhHHHHhcC-----CCCCccccc
Q psy2479 71 DCILCRSTIWKPVTT---PCGHSYCWMCLDRCLDY-----SSSCPLCKT 111 (156)
Q Consensus 71 ~C~IC~~~~~~pv~~---~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~ 111 (156)
.|.+|...-....++ .|...||..|+.+-+.. .-.||.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466777543333233 68889999999755543 236888854
No 204
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.60 E-value=67 Score=19.33 Aligned_cols=16 Identities=13% Similarity=0.324 Sum_probs=11.8
Q ss_pred CCCCcccccCCcCCCc
Q psy2479 103 SSSCPLCKTSLADVGI 118 (156)
Q Consensus 103 ~~~CP~Cr~~~~~~~~ 118 (156)
...|+.|...|.....
T Consensus 65 ~~~C~~C~~~f~~~~~ 80 (110)
T 2csh_A 65 PYECNICAKRFMWRDS 80 (110)
T ss_dssp CEECSSSCCEESCHHH
T ss_pred CeeCCCCcchhcCHHH
Confidence 3589999988865554
No 205
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=27.50 E-value=20 Score=25.40 Aligned_cols=9 Identities=33% Similarity=1.006 Sum_probs=6.9
Q ss_pred CCCcccccC
Q psy2479 104 SSCPLCKTS 112 (156)
Q Consensus 104 ~~CP~Cr~~ 112 (156)
..||.|+.+
T Consensus 172 ~~CP~C~~~ 180 (191)
T 1lko_A 172 ELCPACAHP 180 (191)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCcCC
Confidence 479999775
No 206
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.66 E-value=37 Score=14.29 Aligned_cols=15 Identities=33% Similarity=0.868 Sum_probs=11.3
Q ss_pred CCCcccccCCcCCCc
Q psy2479 104 SSCPLCKTSLADVGI 118 (156)
Q Consensus 104 ~~CP~Cr~~~~~~~~ 118 (156)
..|+.|...+.....
T Consensus 3 ~~C~~C~~~f~~~~~ 17 (29)
T 2m0e_A 3 HKCPHCDKKFNQVGN 17 (29)
T ss_dssp CCCSSCCCCCCTTTH
T ss_pred CcCCCCCcccCCHHH
Confidence 469999888876655
No 207
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=26.60 E-value=26 Score=18.30 Aligned_cols=16 Identities=25% Similarity=0.540 Sum_probs=11.2
Q ss_pred CCCCcccccCCcCCCc
Q psy2479 103 SSSCPLCKTSLADVGI 118 (156)
Q Consensus 103 ~~~CP~Cr~~~~~~~~ 118 (156)
...|+.|...+.....
T Consensus 29 ~~~C~~C~~~f~~~~~ 44 (57)
T 1bbo_A 29 PYHCTYCNFSFKTKGN 44 (57)
T ss_dssp CEECSSSSCEESSHHH
T ss_pred CccCCCCCchhcCHHH
Confidence 4689999887755433
No 208
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=25.79 E-value=15 Score=20.89 Aligned_cols=41 Identities=22% Similarity=0.616 Sum_probs=24.7
Q ss_pred cccccccccccccccEEc--c--cC-CcchHHhHHHHhcC----CCCCccccc
Q psy2479 68 SDFDCILCRSTIWKPVTT--P--CG-HSYCWMCLDRCLDY----SSSCPLCKT 111 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~~--~--Cg-H~fC~~Ci~~~~~~----~~~CP~Cr~ 111 (156)
+...| ||.......++. . |. .-||..|+. +.. ...||.|..
T Consensus 9 e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34567 898865433222 3 55 569999986 322 457888743
No 209
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=25.25 E-value=35 Score=19.09 Aligned_cols=44 Identities=11% Similarity=0.290 Sum_probs=24.7
Q ss_pred cccccccccccccccEEcccCCcchHHhHHHHh-cCCCCCcccccCCcCCCc
Q psy2479 68 SDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCL-DYSSSCPLCKTSLADVGI 118 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~-~~~~~CP~Cr~~~~~~~~ 118 (156)
..+.|.+|...|.....+. .| . .... .....|+.|.+.+.....
T Consensus 16 ~~~~C~~C~k~f~~~~~l~-~H---~---~~H~~~~~~~C~~C~k~f~~~~~ 60 (74)
T 2lce_A 16 KPYKCDRCQASFRYKGNLA-SH---K---TVHTGEKPYRCNICGAQFNRPAN 60 (74)
T ss_dssp CSBCCTTSSCCBSCHHHHH-HH---H---HHHCCCCSEECTTTCCEESCHHH
T ss_pred CCeECCCCCceeCCHHHHH-HH---H---HHcCCCCCEECCCCCchhCCHHH
Confidence 4578999988877642110 00 0 0001 124689999888765444
No 210
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.19 E-value=31 Score=20.36 Aligned_cols=26 Identities=19% Similarity=0.595 Sum_probs=19.1
Q ss_pred cccccccccccccc----EEcccCCcchHH
Q psy2479 69 DFDCILCRSTIWKP----VTTPCGHSYCWM 94 (156)
Q Consensus 69 ~~~C~IC~~~~~~p----v~~~CgH~fC~~ 94 (156)
...|..|...+.-+ ..=.||.+||..
T Consensus 15 ~~rC~~C~kk~gL~~~egf~CrCg~~FC~~ 44 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQELGSCRCGYVFCML 44 (67)
T ss_dssp TTBCSSSCCBCCHHHHHHHCCSSSCCCCTT
T ss_pred CCcchhhCCeecccccCceEecCCCEehhc
Confidence 46799998876654 334799999875
No 211
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.72 E-value=32 Score=19.01 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=24.4
Q ss_pred cccccccccccccccEEcccCCcchHHhHHHHhc-----CCCCCcccccCCcCCCc
Q psy2479 68 SDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLD-----YSSSCPLCKTSLADVGI 118 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~~~~ 118 (156)
..+.|.+|...|..... +..... ....|+.|...|.....
T Consensus 8 ~~~~C~~C~k~f~~~~~-----------L~~H~~~H~~~~~~~C~~C~~~f~~~~~ 52 (70)
T 1x5w_A 8 HPEKCSECSYSCSSKAA-----------LRIHERIHCTDRPFKCNYCSFDTKQPSN 52 (70)
T ss_dssp CSEECSSSSCEESSHHH-----------HHHHHGGGCCSCSEECSSSSCEESSHHH
T ss_pred CCeECCCCCcccCCHHH-----------HHHHHHHcCCCCCEeCCCCCCccCCHHH
Confidence 35789999888776421 111111 13689999887765444
No 212
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=24.42 E-value=22 Score=24.53 Aligned_cols=44 Identities=18% Similarity=0.471 Sum_probs=28.6
Q ss_pred cccccccccccccc-cEEc---ccCCcchHHhHHHHh-----cCCCCCcccccC
Q psy2479 68 SDFDCILCRSTIWK-PVTT---PCGHSYCWMCLDRCL-----DYSSSCPLCKTS 112 (156)
Q Consensus 68 ~~~~C~IC~~~~~~-pv~~---~CgH~fC~~Ci~~~~-----~~~~~CP~Cr~~ 112 (156)
+...| +|.....+ ...+ .|..-||..|+.-.. .....||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45678 99887542 2233 577789999984211 225789999753
No 213
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=24.35 E-value=66 Score=18.73 Aligned_cols=38 Identities=16% Similarity=0.445 Sum_probs=24.1
Q ss_pred ccccccccccccc-cEEcccCCcchHHhHHHHhcCCCCCccc
Q psy2479 69 DFDCILCRSTIWK-PVTTPCGHSYCWMCLDRCLDYSSSCPLC 109 (156)
Q Consensus 69 ~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~CP~C 109 (156)
...|..|...+.- +..=.||.+||..= .+.....|+.-
T Consensus 15 ~~rC~~C~kkvgl~~f~CrCg~~FC~~H---R~~e~H~C~fD 53 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKCKCGSTFCGSH---RYPEKHECSFD 53 (64)
T ss_dssp SCSCTTTCCCCTTSCEECTTSCEECSSS---CSSTTTTCCCC
T ss_pred CCcChhhCCcccccCeEeecCCEecccC---CCccccCCCcc
Confidence 4679999886543 45558999998763 22224456544
No 214
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=24.32 E-value=35 Score=14.48 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=10.4
Q ss_pred CCCcccccCCcCCCc
Q psy2479 104 SSCPLCKTSLADVGI 118 (156)
Q Consensus 104 ~~CP~Cr~~~~~~~~ 118 (156)
..|+.|...+.....
T Consensus 3 ~~C~~C~~~f~~~~~ 17 (29)
T 1ard_A 3 FVCEVCTRAFARQEH 17 (29)
T ss_dssp CBCTTTCCBCSSHHH
T ss_pred eECCCCCcccCCHHH
Confidence 568899887765443
No 215
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=24.23 E-value=18 Score=22.33 Aligned_cols=44 Identities=18% Similarity=0.490 Sum_probs=29.9
Q ss_pred ccccccccccccc---ccEEc--ccCCcchHHhHHHHhc--------CCCCCccccc
Q psy2479 68 SDFDCILCRSTIW---KPVTT--PCGHSYCWMCLDRCLD--------YSSSCPLCKT 111 (156)
Q Consensus 68 ~~~~C~IC~~~~~---~pv~~--~CgH~fC~~Ci~~~~~--------~~~~CP~Cr~ 111 (156)
....|.||...-. +.+++ .|...||..|+..-+. ..-.|+.|..
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 3567999987643 33444 6888999999876543 1357888854
No 216
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=24.09 E-value=12 Score=27.52 Aligned_cols=42 Identities=26% Similarity=0.548 Sum_probs=24.9
Q ss_pred cccccccccccccEEc---ccCCcchHHhHHHHhcC-----CCCCccccc
Q psy2479 70 FDCILCRSTIWKPVTT---PCGHSYCWMCLDRCLDY-----SSSCPLCKT 111 (156)
Q Consensus 70 ~~C~IC~~~~~~pv~~---~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~ 111 (156)
..|.+|...-.....+ .|...||..|+.+-+.. .-.||.|..
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3688887643222222 68889999999866543 236999954
No 217
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.02 E-value=11 Score=22.78 Aligned_cols=40 Identities=30% Similarity=0.585 Sum_probs=26.3
Q ss_pred cccccccccccc-EEc--ccCCcchHHhHHHHhcC-----CCCCcccc
Q psy2479 71 DCILCRSTIWKP-VTT--PCGHSYCWMCLDRCLDY-----SSSCPLCK 110 (156)
Q Consensus 71 ~C~IC~~~~~~p-v~~--~CgH~fC~~Ci~~~~~~-----~~~CP~Cr 110 (156)
.|.||...-... +++ .|...||..|+.+-+.. .-.||.|.
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 75 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCcc
Confidence 688888643332 333 68889999999755543 23688874
No 218
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=23.87 E-value=25 Score=25.24 Aligned_cols=9 Identities=33% Similarity=1.132 Sum_probs=7.0
Q ss_pred CCCcccccC
Q psy2479 104 SSCPLCKTS 112 (156)
Q Consensus 104 ~~CP~Cr~~ 112 (156)
..||.|+.+
T Consensus 187 ~~CP~C~~~ 195 (202)
T 1yuz_A 187 EKCPICFRP 195 (202)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 579999764
No 219
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=23.82 E-value=18 Score=20.49 Aligned_cols=43 Identities=21% Similarity=0.519 Sum_probs=25.1
Q ss_pred cccccccccccccccEEc--c--cC-CcchHHhHHHHhc--CCCCCccccc
Q psy2479 68 SDFDCILCRSTIWKPVTT--P--CG-HSYCWMCLDRCLD--YSSSCPLCKT 111 (156)
Q Consensus 68 ~~~~C~IC~~~~~~pv~~--~--Cg-H~fC~~Ci~~~~~--~~~~CP~Cr~ 111 (156)
+...| +|.......++. . |. .-||..|+.-... ....||.|+.
T Consensus 8 e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 34567 898865433222 3 65 5799999861111 1457888853
No 220
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=23.16 E-value=36 Score=14.20 Aligned_cols=14 Identities=29% Similarity=0.721 Sum_probs=9.5
Q ss_pred CCCcccccCCcCCC
Q psy2479 104 SSCPLCKTSLADVG 117 (156)
Q Consensus 104 ~~CP~Cr~~~~~~~ 117 (156)
..|+.|.+.+....
T Consensus 2 ~~C~~C~k~f~~~~ 15 (27)
T 1znf_A 2 YKCGLCERSFVEKS 15 (27)
T ss_dssp CBCSSSCCBCSSHH
T ss_pred ccCCCCCCcCCCHH
Confidence 36888888775543
No 221
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=23.00 E-value=82 Score=15.68 Aligned_cols=15 Identities=13% Similarity=0.457 Sum_probs=11.3
Q ss_pred ccccccccccccccc
Q psy2479 68 SDFDCILCRSTIWKP 82 (156)
Q Consensus 68 ~~~~C~IC~~~~~~p 82 (156)
..+.|.+|...|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (48)
T 2epr_A 11 KQVACEICGKIFRDV 25 (48)
T ss_dssp CSEEETTTTEEESSH
T ss_pred cCeeCCCCCcccCCH
Confidence 357899998887764
No 222
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.81 E-value=64 Score=19.12 Aligned_cols=45 Identities=20% Similarity=0.381 Sum_probs=28.0
Q ss_pred ccccccccccccc-ccEEc---ccCCcchHHhHHHH---h--cCCCCCcccccCC
Q psy2479 68 SDFDCILCRSTIW-KPVTT---PCGHSYCWMCLDRC---L--DYSSSCPLCKTSL 113 (156)
Q Consensus 68 ~~~~C~IC~~~~~-~pv~~---~CgH~fC~~Ci~~~---~--~~~~~CP~Cr~~~ 113 (156)
+...| ||..... ....+ .|..=||..|+.-. . .....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34556 8888763 22233 57767899998311 1 1357999997654
No 223
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=22.02 E-value=40 Score=20.06 Aligned_cols=31 Identities=29% Similarity=0.617 Sum_probs=23.0
Q ss_pred cccccccccccc-cccEE--cccCCcchHHhHHH
Q psy2479 68 SDFDCILCRSTI-WKPVT--TPCGHSYCWMCLDR 98 (156)
Q Consensus 68 ~~~~C~IC~~~~-~~pv~--~~CgH~fC~~Ci~~ 98 (156)
.+..|.+|...- ..++. +.|.-.||..|+..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 357899998644 33333 58999999999986
No 224
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=21.67 E-value=50 Score=13.92 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=10.9
Q ss_pred CCCcccccCCcCCCc
Q psy2479 104 SSCPLCKTSLADVGI 118 (156)
Q Consensus 104 ~~CP~Cr~~~~~~~~ 118 (156)
..|+.|...+.....
T Consensus 3 ~~C~~C~k~f~~~~~ 17 (30)
T 1klr_A 3 YQCQYCEFRSADSSN 17 (30)
T ss_dssp CCCSSSSCCCSCSHH
T ss_pred ccCCCCCCccCCHHH
Confidence 468999888765544
No 225
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.51 E-value=58 Score=15.94 Aligned_cols=13 Identities=15% Similarity=0.616 Sum_probs=9.1
Q ss_pred ccccccccccccc
Q psy2479 69 DFDCILCRSTIWK 81 (156)
Q Consensus 69 ~~~C~IC~~~~~~ 81 (156)
.+.|.+|...|..
T Consensus 10 ~~~C~~C~k~f~~ 22 (45)
T 2epq_A 10 PYSCPVCGLRFKR 22 (45)
T ss_dssp SSEETTTTEECSC
T ss_pred CCcCCCCCcccCC
Confidence 4678888777665
No 226
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=21.43 E-value=29 Score=22.36 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=18.6
Q ss_pred ccccccccccccccEEcccCCcchHH
Q psy2479 69 DFDCILCRSTIWKPVTTPCGHSYCWM 94 (156)
Q Consensus 69 ~~~C~IC~~~~~~pv~~~CgH~fC~~ 94 (156)
...|..|...-..-+=|.|||++|.+
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCgr 49 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCGR 49 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEECT
T ss_pred CCcCccccCCCCeeeeeecCccccCC
Confidence 45699998654434568999999853
No 227
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.42 E-value=84 Score=18.27 Aligned_cols=38 Identities=18% Similarity=0.452 Sum_probs=24.1
Q ss_pred ccccccccccccc-cEEcccCCcchHHhHHHHhcCCCCCccc
Q psy2479 69 DFDCILCRSTIWK-PVTTPCGHSYCWMCLDRCLDYSSSCPLC 109 (156)
Q Consensus 69 ~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~CP~C 109 (156)
...|..|..-+.- +..=.||.+||..= .+.....|+.-
T Consensus 15 ~~rC~~C~kkvgl~~f~CrCg~~FC~~H---Ry~e~H~C~fD 53 (64)
T 1wfh_A 15 PNRCTVCRKRVGLTGFMCRCGTTFCGSH---RYPEVHGCTFD 53 (64)
T ss_dssp CCCCTTTCCCCCTTCEECSSSCEECTTT---CSTTTTTCCCC
T ss_pred CCcChhhCCccCccCEEeecCCEecccc---CCcccCCCCch
Confidence 4679999886443 45557999998763 22224456543
No 228
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=21.37 E-value=24 Score=17.05 Aligned_cols=11 Identities=36% Similarity=0.975 Sum_probs=5.6
Q ss_pred CCcccccCCcC
Q psy2479 105 SCPLCKTSLAD 115 (156)
Q Consensus 105 ~CP~Cr~~~~~ 115 (156)
.||+|+.....
T Consensus 5 ~CpvCk~q~Pd 15 (28)
T 2jvx_A 5 CCPKCQYQAPD 15 (28)
T ss_dssp ECTTSSCEESS
T ss_pred cCccccccCcC
Confidence 45555554433
No 229
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=21.03 E-value=47 Score=14.21 Aligned_cols=15 Identities=20% Similarity=0.656 Sum_probs=10.4
Q ss_pred CCCcccccCCcCCCc
Q psy2479 104 SSCPLCKTSLADVGI 118 (156)
Q Consensus 104 ~~CP~Cr~~~~~~~~ 118 (156)
..|+.|...+.....
T Consensus 3 ~~C~~C~k~f~~~~~ 17 (30)
T 1paa_A 3 YACGLCNRAFTRRDL 17 (30)
T ss_dssp SBCTTTCCBCSSSHH
T ss_pred cCCcccCcccCChHH
Confidence 468888887765444
No 230
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.97 E-value=70 Score=19.19 Aligned_cols=38 Identities=18% Similarity=0.464 Sum_probs=24.2
Q ss_pred ccccccccccccc-cEEcccCCcchHHhHHHHhcCCCCCccc
Q psy2479 69 DFDCILCRSTIWK-PVTTPCGHSYCWMCLDRCLDYSSSCPLC 109 (156)
Q Consensus 69 ~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~CP~C 109 (156)
...|..|...+.- +..=.||.+||..= .+.....|+.-
T Consensus 25 ~~RC~~C~kkvgL~~f~CrCg~~FCs~H---Ry~e~H~C~fD 63 (74)
T 1wfp_A 25 ATRCLSCNKKVGVTGFKCRCGSTFCGTH---RYPESHECQFD 63 (74)
T ss_dssp CCBCSSSCCBCTTTCEECTTSCEECTTT---CSTTTSCCCSC
T ss_pred CccchhhcCcccccceEeccCCEecccc---CCCcCCCCcCc
Confidence 4679999866544 45558999998763 22234456544
No 231
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=20.04 E-value=89 Score=24.30 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=23.8
Q ss_pred CCcccccccccccccc----cEE-cccCCcchHHhHH
Q psy2479 66 DSSDFDCILCRSTIWK----PVT-TPCGHSYCWMCLD 97 (156)
Q Consensus 66 ~~~~~~C~IC~~~~~~----pv~-~~CgH~fC~~Ci~ 97 (156)
......|..|...+.. ... ..||.++|..|..
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLG 390 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGG
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCcCccchhhhh
Confidence 4456789999998763 222 3699999999964
Done!