RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2479
(156 letters)
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 70.8 bits (173), Expect = 1e-16
Identities = 17/93 (18%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 46 DKLKNTEFQPSSLKIDLTRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSS 105
++ + + Q + + ++ CI+C + VT C HS+C C++ +
Sbjct: 41 EEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIE 100
Query: 106 CPLCKTSLA--DVGILATTCIEKRLKAINKTFE 136
CP+C+ + ++ CI K + ++ +
Sbjct: 101 CPICRKDIKSKTYSLVLDNCINKMVNNLSSEVK 133
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 64.5 bits (157), Expect = 8e-15
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 66 DSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGILATTCIE 125
+ F C +CR PV T C H +C C + C +C + A +
Sbjct: 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAKE-LM 70
Query: 126 KRLKAINK 133
+L+
Sbjct: 71 AKLQKSGP 78
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 64.1 bits (156), Expect = 9e-15
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 65 ADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLAD 115
+ +C +C T PV+ PC H +C++C+ C LC+ + +
Sbjct: 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 61.1 bits (148), Expect = 4e-13
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 68 SDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSS-SCPLCKTSL 113
S+ C +C + +PVT PC H+ C C ++ +S CP C+ +
Sbjct: 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 61.1 bits (148), Expect = 5e-13
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 67 SSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSS-SCPLCKTSL 113
F CI C+ +++P+TT C H+ C CLDR SCP C+ L
Sbjct: 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDL 97
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 58.9 bits (142), Expect = 6e-12
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 61 DLTRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSS-SCPLCKTSL 113
+ + F C+ C+ +++PVTT C H+ C CL R SCP C+ L
Sbjct: 70 NFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDL 123
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 55.6 bits (134), Expect = 1e-11
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 67 SSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCL-DYSSSCPLCKTSLADVGIL 119
+ C C + P T CGH +C C+ L S C C+ S+ +
Sbjct: 13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKVF 66
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 55.2 bits (133), Expect = 6e-11
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 68 SDFDCILCRSTIWKPVT-TPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGILATTCIEK 126
C+LC T C HS+C C+ R L+ S CP+C + L +K
Sbjct: 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDK 73
Query: 127 RLKAI-NKTFELIDQSERSQE 146
L+ I K + ++E +
Sbjct: 74 TLQDIVYKLVPGLFKNEMKRR 94
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 57.5 bits (138), Expect = 1e-10
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 67 SSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLD-YSSSCPLCKTSL 113
S+ C +C PCGH C CL + CP C+ +
Sbjct: 330 STFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 53.2 bits (128), Expect = 2e-10
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 67 SSDFDCILCRSTIWKPVT-TPCGHSYCWMCLDRCLDYSSSCPLCKTSL 113
+ C +C+ + T T C H++C C+ R YS+ CP C +
Sbjct: 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 53.6 bits (129), Expect = 3e-10
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 61 DLTRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYS---SSCPLCKTS 112
++ A +C +C I +PV+T C H +C C+ + L+ S CPLCK
Sbjct: 13 NVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKND 67
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 51.7 bits (124), Expect = 9e-10
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 68 SDFDCILCRSTIWKPVTTP-CGHSYCWMCLDRCLDYSSSCPLCKTSL 113
C +C + P C H+YC +C+ + L Y + CP C ++
Sbjct: 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 51.1 bits (122), Expect = 1e-09
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 56 SSLKIDLTRADSSDFDCILCRSTIWKP-------VTTPCGHSYCWMCLDRCLDYSSSCPL 108
SS S C +C + V+T CGH +C CL L +++CP
Sbjct: 2 SSGSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 61
Query: 109 CKTSL 113
C+ +
Sbjct: 62 CRKKI 66
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 51.8 bits (124), Expect = 1e-09
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 48 LKNTEFQPSSLKIDLTRADSSDFDCILCRSTIWKPVTTP-CGHSYCWMCLDRCL-DYSSS 105
+ + S + + + F C +C + P C C+ C+ R L + +
Sbjct: 1 MGHHHHHHSHMDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQ 60
Query: 106 CPLCKTSLADVGILATTCIEKRLKAINK 133
CP C+ L ++ E+ + ++
Sbjct: 61 CPHCRAPLQLRELVNCRWAEEVTQQLDT 88
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 50.2 bits (120), Expect = 2e-09
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 68 SDFDCILCRSTIWKP-------VTTPCGHSYCWMCLDRCLDYSSSCPLCKTSL 113
+ C +C + V+T CGH +C CL L +++CP C+ +
Sbjct: 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 50.2 bits (120), Expect = 2e-09
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 66 DSSDFDCILCRSTIWKP-------VTTPCGHSYCWMCLDRCLDYSSSCPLCKTSL 113
S C +C + V+T CGH +C CL L +++CP C+ +
Sbjct: 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 50.5 bits (121), Expect = 2e-09
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 61 DLTRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYS------SSCPLCKTS 112
+ + C +C + +PV+ C HS+C C+ + + +CP+C+
Sbjct: 11 SVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVP 68
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 49.3 bits (118), Expect = 5e-09
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 69 DFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYS---SSCPLCKTS 112
+ C +C + KPVT CGH++C C+ + + S CPLCKTS
Sbjct: 20 EVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTS 66
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 48.9 bits (117), Expect = 5e-09
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 67 SSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVG 117
+ + +C +C + PC HS+C C+D+ D +CP+C+ +
Sbjct: 13 TDEEECCICMDG-RADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 50.2 bits (120), Expect = 5e-09
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 67 SSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCL-DYSSSCPLCKTSL 113
S ++C +C + + V TPCGH +C C+ + + D CP+ L
Sbjct: 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 49.2 bits (118), Expect = 6e-09
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 69 DFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYS------SSCPLCKTS 112
+ C +C + +P++ CGHS+C CL S SSCP+C+ S
Sbjct: 19 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRIS 68
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 48.8 bits (117), Expect = 9e-09
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 69 DFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYS-------SSCPLCKTS 112
+ C +C + +P++ CGHS C C+ + SSCP+C S
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGIS 62
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 48.2 bits (115), Expect = 1e-08
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 66 DSSDFDCILCRSTIW-KPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADV 116
+ C +C + PC H++C++C+ R + + +CPLCK + V
Sbjct: 2 ATVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 47.0 bits (112), Expect = 3e-08
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 69 DFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYS---SSCPLC 109
+ C +C + KPVT CGH++C C+ + + S CPLC
Sbjct: 20 EVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 49.2 bits (117), Expect = 3e-08
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 68 SDFDCILCRSTIWKPVTTP-CGHSYCWMCLDRCLDYS-SSCPLCKTSLADVGILATTCIE 125
S+ C +C + +TT C H +C C+ L CP C+ L L
Sbjct: 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNF 112
Query: 126 KRLKAINKTFELIDQSERSQE 146
L I+K + D+ E QE
Sbjct: 113 DAL--ISKIYPSRDEYEAHQE 131
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 46.2 bits (110), Expect = 4e-08
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 69 DFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLD---YSSSCPLC 109
+ C +C + +PV CGH++C C+ R + CP+C
Sbjct: 15 EASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 47.8 bits (113), Expect = 8e-08
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 67 SSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCL-DYSSSCPLCK 110
+ + C CR+ + +P CGH YC CL L +C C
Sbjct: 29 EAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACV 73
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 46.8 bits (111), Expect = 1e-07
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 49 KNTEFQPSSLKIDLTRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLD-YSSSCP 107
L +D C +C + PV T C H +C +C+ RCL S CP
Sbjct: 3 SKIHLSTKLLAVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCP 62
Query: 108 LCKTSL 113
C+
Sbjct: 63 SCRYPC 68
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 45.9 bits (108), Expect = 3e-07
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 66 DSSDFDCILC-------RSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSL 113
S C +C V+T CGH +C CL L +++CP C+ +
Sbjct: 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 38.6 bits (89), Expect = 1e-04
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 82 PVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSL 113
V+T CGH +C CL L +++CP C+ +
Sbjct: 92 IVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 44.4 bits (105), Expect = 4e-07
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 69 DFDCILCRSTIWKPVTTP-CGHSYCWMCLDRCLDYSS--SCPLCKTSL 113
+ C++C+ + V P CG+SYC C+ L S +CP C +
Sbjct: 15 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 45.3 bits (107), Expect = 5e-07
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 72 CILCRSTIWKPVT-TPCGHSYCWMCLDRCLDYSSSCPLCKT 111
C C + + +PV C H +C C+ C+ + CP+C T
Sbjct: 25 CSRCTNILREPVCLGGCEHIFCSNCVSDCI--GTGCPVCYT 63
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 43.5 bits (103), Expect = 5e-07
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 72 CILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSL 113
C C++ P PC H+ C CL+ CP+C+
Sbjct: 9 CQQCQAEAKCPKLLPCLHTLCSGCLEA---SGMQCPICQAPW 47
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 44.0 bits (104), Expect = 7e-07
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 69 DFDCILCRSTIWKPVTTP-CGHSYCWMCLDRCLDYS--SSCPLCKTS 112
+ C++C+ + V P CG+SYC C+ L S +CP C +
Sbjct: 13 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN 59
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 65
Score = 41.9 bits (98), Expect = 2e-06
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 69 DFDCILCRSTIW-----KPVTTPCGHSYCWMCLDRCLDY-SSSCPLCKTSL 113
D C C++T + K + CGH+ C C+D + +CP C T L
Sbjct: 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 43.2 bits (101), Expect = 5e-06
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 67 SSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSS-CPLCKTSL 113
S ++C +C + + V TPCGH +C C+ + + + CP+ L
Sbjct: 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 38.8 bits (91), Expect = 3e-05
Identities = 14/54 (25%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 65 ADSSDFDCILCRSTIW---KPVTT-PCGHSYCWMCLDRCLDYSSSCPLCKTSLA 114
S C +C I PCGH C + L CPLC +
Sbjct: 1 GSSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural
genomics, PSI-2, protein struc initiative; NMR {Homo
sapiens}
Length = 91
Score = 39.2 bits (92), Expect = 4e-05
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 86 PCGHSYCWMCLDRCLDYSSSCPLCKTSL 113
PC H + C+ L S +CP+C+
Sbjct: 60 PCHHYFHKPCVSIWLQKSGTCPVCRCMF 87
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 1e-04
Identities = 28/168 (16%), Positives = 46/168 (27%), Gaps = 59/168 (35%)
Query: 12 EYVHNSANILSDKFSLSSEARKIPVLLTRILTEVDKLKNTEFQPSSLKIDLTRADSSDFD 71
+ + SA LS L + T+ L ++ L+N P D+
Sbjct: 186 DLIKFSAETLS---ELIRTTLDAEKVFTQGLNILEWLENPSNTP-----------DKDY- 230
Query: 72 CILCRSTIWKPVTTP------CGHSYCWMCLDRCLDYSSSCP------LCKTSLADVGIL 119
L P++ P H Y + L ++ P L + G++
Sbjct: 231 --LLSI----PISCPLIGVIQLAH-YVVTA--KLLGFT---PGELRSYLKGATGHSQGLV 278
Query: 120 ATTCIEKRLKAINKTFE-LIDQSE-----------RSQE---FTMAPP 152
I A ++E R E T PP
Sbjct: 279 TAVAI-----AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Score = 40.4 bits (94), Expect = 1e-04
Identities = 36/181 (19%), Positives = 54/181 (29%), Gaps = 77/181 (42%)
Query: 7 QQIELEYVHNSAN--ILS----DKFSLSSEARKI-------------------------P 35
+Q+E+ + N A ++S + L+ RK P
Sbjct: 364 KQVEI-SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 36 V-------LLT----RILTEVDKLKNTEFQPSSLKI---------DLTRADSSD-----F 70
V LL I ++ K N F ++I DL R S
Sbjct: 423 VASPFHSHLLVPASDLINKDLVK-NNVSFNAKDIQIPVYDTFDGSDL-RVLSGSISERIV 480
Query: 71 DCILCRSTI-WKPVTTPCGHSYCWMCLDRCLDY-----SSSCPLCKTSLADVG---ILAT 121
DCI R + W TT ++ LD+ S L + G I+A
Sbjct: 481 DCI-IRLPVKW-ETTTQFKATH-------ILDFGPGGASGLGVLTHRNKDGTGVRVIVAG 531
Query: 122 T 122
T
Sbjct: 532 T 532
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 37.8 bits (88), Expect = 1e-04
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 86 PCGHSYCWMCLDRCLDYSSSCPLCKTSL 113
PC H++ CL + L+ CPLC +
Sbjct: 35 PCKHAFHRKCLIKWLEVRKVCPLCNMPV 62
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 78
Score = 37.0 bits (86), Expect = 2e-04
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 86 PCGHSYCWMCLDRCLDYSSSCPLCKTSL 113
PC H + C+ L+ SCP+C+ SL
Sbjct: 35 PCNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 37.0 bits (86), Expect = 3e-04
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 67 SSDFDCILCRS----TIWKPVTTPCGHSYCWMCLDRCLDYSS---SCPLCK--TSLADVG 117
+C +C +P CGH+ C CL++ L S CP C T + +
Sbjct: 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLT 72
Query: 118 ILAT 121
L
Sbjct: 73 QLTD 76
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 35.0 bits (81), Expect = 0.001
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 86 PCGHSYCWMCLDRCLDYSSSCPLCKTSLA 114
PC H + C+D+ L + +CP+C+
Sbjct: 43 PCNHEFHAKCVDKWLKANRTCPICRADSG 71
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn
binding domain, metal zinc, zinc-finger, metal binding
protein; NMR {Homo sapiens}
Length = 69
Score = 34.3 bits (79), Expect = 0.002
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 86 PCGHSYCWMCLDRCLDYSSSCPLCKTSL 113
PC H + +C+D+ L + CP+C+ +
Sbjct: 34 PCMHLFHQVCVDQWLITNKKCPICRVDI 61
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 33.1 bits (75), Expect = 0.006
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Query: 66 DSSDFDCILC----RSTIWKPVTTPCGHSYCWMCLDRCL-DYSSSCPLCKTSLADVGILA 120
+C LC CG+ C C R D + CP C+ + +
Sbjct: 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVY 67
Query: 121 TTCIEKRLKAI 131
++ L+ I
Sbjct: 68 KPLSQEELQRI 78
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 32.6 bits (74), Expect = 0.008
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 71 DCILCRSTIWKPVT-TPCGHSYCWMCLDRCLDYS--SSCPLCKTSL 113
C +C S + + + CG C+ + + CP C
Sbjct: 17 ICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.44.1.1
Length = 114
Score = 33.7 bits (76), Expect = 0.008
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 23/68 (33%)
Query: 67 SSDFDCILCRSTIWKPVT------------------TPCGHSYCWMCLDRCLDYSS---- 104
+ + DCI+C + T C H++ +CL +
Sbjct: 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGS 82
Query: 105 -SCPLCKT 111
CP CKT
Sbjct: 83 LQCPSCKT 90
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase,
UBL conjugation pathway; NMR {Mus musculus}
Length = 85
Score = 32.7 bits (75), Expect = 0.009
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 55 PSSLKIDLTRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLA 114
P S +ID + A +F L + + PV P G + R L S + P + L
Sbjct: 1 PGSAEIDYSDA-PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59
Query: 115 D 115
+
Sbjct: 60 E 60
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin
ligase, E4 polyubiquitin chain EL factor,
phosphoprotein, UBL conjugation pathway; NMR {Homo
sapiens} PDB: 3l1x_A 3l1z_B
Length = 100
Score = 33.2 bits (76), Expect = 0.009
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 45 VDKLKNTEFQPSSLKIDLTRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSS 104
+K++ + + +ID + A +F L + + PV P G + R L S
Sbjct: 6 AEKVEEIVAKNARAEIDYSDA-PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSP 64
Query: 105 SCPLCKTSLAD 115
+ P + +L +
Sbjct: 65 TDPFNRQTLTE 75
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 34.4 bits (78), Expect = 0.011
Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 7/103 (6%)
Query: 12 EYVHNSANILSDKFSLSSEARKIPVLLTRILTEVDKLKNTEFQPSSLKIDLTRADSSDFD 71
+ +IL K L+S + ++L +K + ++ +F
Sbjct: 840 NLFVRAVDILGRKTGLASPE-----FIEKLLNFANKAEEQRKADEEEDLEYGDV-PDEFL 893
Query: 72 CILCRSTIWKPVTTPC-GHSYCWMCLDRCLDYSSSCPLCKTSL 113
L + + PV P + + L S+ P + L
Sbjct: 894 DPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPL 936
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin
ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana}
SCOP: g.44.1.2
Length = 78
Score = 31.8 bits (73), Expect = 0.016
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 82 PVTTPCGHSYCWMCLDRCLDYS-SSCPLCKTSLAD 115
PV G +Y + + LD +CP + +L
Sbjct: 21 PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 31.8 bits (72), Expect = 0.020
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 72 CILCRSTI----WKPVTTPCGHSYCWMCLDRCLDYSSSCPLC 109
C+ C++ V C HS+ C+ + ++ CPLC
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLC 70
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR
{Oryza sativa} SCOP: g.44.1.1
Length = 55
Score = 30.2 bits (69), Expect = 0.036
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 87 CGHSYCWMCLDRCLDYSSSCPLCKTSL 113
CGH + C+D L S+CPLC+ ++
Sbjct: 27 CGHGFHAECVDMWLGSHSTCPLCRLTV 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 30.2 bits (68), Expect = 0.046
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 83 VTTPCGHSY-CWMCLDRCLDYSSSCPLCKTSLADV 116
+ GH C+ C R +SCP+CK + V
Sbjct: 23 IHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLV 57
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase;
1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB:
1n87_A
Length = 61
Score = 29.6 bits (67), Expect = 0.070
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 68 SDFDCILCRSTIWKPVTTP-CGHSYCWMCLDRCLDYSSSCPLCKTSL 113
S C + +PV +P + L++ + + + P+ L
Sbjct: 2 SHMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPL 48
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA,
apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase,
IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB:
1qbh_A 2l9m_A 3eb5_A 3eb6_A
Length = 345
Score = 31.5 bits (69), Expect = 0.090
Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 5/107 (4%)
Query: 11 LEYVHNSANILSDKFSLSSEARKIPVLLTRILTEVDKLKNTEFQPSSLKIDLTRADSSDF 70
++ + N ++ F S + + + + K TE + R +
Sbjct: 237 IDTILVKGNAAANIFKNSLKEIDSTLYKNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEER 296
Query: 71 DCILCRSTIWKPVTTPCGH-SYCWMCLDRCLDYSSSCPLCKTSLADV 116
C +C V PCGH C C CP+C+ +
Sbjct: 297 TCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGT 339
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of
EIF4E, cytoplasm, HOST-virus interaction, lipoprotein,
membrane; NMR {Lassa virus josiah}
Length = 99
Score = 30.1 bits (67), Expect = 0.11
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 81 KPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSL 113
K + H C CL L S+ CP+CK L
Sbjct: 39 KGLVECNNHYLCLNCLTLLLSVSNRCPICKMPL 71
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 31.0 bits (70), Expect = 0.12
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 82 PVTTPCGHSYCWMCLDRCLDYSSSC-PLCKTSLA 114
P TP G +Y ++ L P+ ++ L
Sbjct: 221 PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 29.8 bits (66), Expect = 0.15
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 72 CILCRSTI-WKPVTTPCGHSYCWMCLDRCLDYS-SSCPLCKTSLADV 116
C C I PC H +C+ C CP C + +
Sbjct: 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 30.5 bits (68), Expect = 0.19
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 66 DSSDFDCILCRSTIWKPVTTP-CGHSYCWMCLDRCLDYSSS--CPLCKTSLAD 115
+ C +C S + + + CG C+ + ++ CP C
Sbjct: 177 PDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A
{Mus musculus} SCOP: b.69.12.1
Length = 495
Score = 30.0 bits (66), Expect = 0.31
Identities = 17/112 (15%), Positives = 35/112 (31%), Gaps = 2/112 (1%)
Query: 6 CQQIELEYVHNSANILSDKFSLSSEARKIPVLLTRILTEVDKLKNTEFQPSSLKIDLTRA 65
C + + L D F ++S+ K P++ T + K + S+ D+ R
Sbjct: 268 CSVPGPNGIDTHFDELQDVFLMNSKDPKNPIVYGVFTTSSNIFKGSAVCMYSMS-DVRRV 326
Query: 66 DSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLD-YSSSCPLCKTSLADV 116
+ + W P + C + + S+ L +
Sbjct: 327 FLGPYAHRDGPNYQWVPYQGRVPYPRPGTCPSKTFGGFDSTKDLPDDVITFA 378
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 29.4 bits (65), Expect = 0.40
Identities = 21/120 (17%), Positives = 32/120 (26%), Gaps = 23/120 (19%)
Query: 14 VHNSANILSDKFSLSSEARKIPVLLTRILTEVDKLKNTEFQPSSLKIDLTRADSSDFDCI 73
V ++LSD S I L R+ S L D+ + C
Sbjct: 257 VARLRHVLSDGLSNWDSEMNIHKNLLRMFDLCYFPM----PDWSDGPKLDEEDNEELRCN 312
Query: 74 LCRS--------TIWKPVTTPCGHSYCWMCLDRCLDYSSS-----------CPLCKTSLA 114
+C + + C +CL+ CP CK L+
Sbjct: 313 ICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus
interaction, receptor, UBL conjugation, UBL conjugation
pathway, acetylation, cytoplasm; 2.60A {Homo sapiens}
SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D
4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Length = 106
Score = 28.6 bits (63), Expect = 0.40
Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 26/92 (28%)
Query: 44 EVDKLKNTEFQPSSLKIDLT--------RADSSDFDCILCR------------------S 77
+VD T + ++ D +C +CR S
Sbjct: 4 DVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATS 63
Query: 78 TIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLC 109
C H++ + C+ R L CPL
Sbjct: 64 EECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 95
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA
complex, DNA-binding protein- complex; HET: DNA 3DR;
5.93A {Mus musculus}
Length = 117
Score = 28.7 bits (63), Expect = 0.42
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 85 TPCGHSYCWMCLDRCLDYSSSCPLC 109
C H++ + C+ R L CPL
Sbjct: 82 GVCNHAFHFHCISRWLKTRQVCPLD 106
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation,
alternative splicing, HOST-virus interaction, UBL
conjugation pathway, zinc-finger, polymorphism; HET:
FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Length = 64
Score = 27.5 bits (61), Expect = 0.46
Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 63 TRADSSDFDCILC----RSTIWKPVTTPCGHSY-CWMCLDRCLDYSSSCPLCKTSLADV 116
+ ++ C++C ++ GH C+ C + + CP+C+ + +
Sbjct: 2 SLPLNAIEPCVICQGRPKNGCIVHG--KTGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 58
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 28.8 bits (64), Expect = 0.56
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 110 KTSLADVGILATTCIEKRLKAINKTFELIDQSERSQE 146
S+ D I IE+ +N+ F + + E
Sbjct: 184 FISMEDYAIAVLDEIERP-NHLNEHFTVAGKLEHHHH 219
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase;
NMR {Homo sapiens} SCOP: g.44.1.1
Length = 60
Score = 27.0 bits (60), Expect = 0.63
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 8/47 (17%)
Query: 71 DCILCRSTIWKP--------VTTPCGHSYCWMCLDRCLDYSSSCPLC 109
+C C TI K C +CW+CL + S+ C
Sbjct: 8 ECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAWYNC 54
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 28.8 bits (63), Expect = 0.81
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 69 DFDCILCRSTIWKPVT-TPCGHSYCWMCLDRCLDYSSS--CP 107
+ C + P+ C H + + L ++ CP
Sbjct: 181 ELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCP 222
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.81
Identities = 6/23 (26%), Positives = 8/23 (34%), Gaps = 10/23 (43%)
Query: 124 IEKRLK----------AINKTFE 136
++ LK AI T E
Sbjct: 25 LQASLKLYADDSAPALAIKATME 47
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 26.7 bits (59), Expect = 1.1
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 61 DLTRADSSDFDCILCRSTIWKPVTTPCGH-SYCWMCLDRCLDYSSSCPLCKTSLADV 116
+ ++ + DC++C++ V PC H C C+ CP+C+ + +
Sbjct: 7 GVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----QQCPMCRQFVQES 59
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 26.7 bits (59), Expect = 1.2
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 72 CILCRSTIWKPVTTPCGH-SYCWMCLDRCLDYSSSCPLCKTSLADV 116
C++C PCGH C C + SCP+C++ + V
Sbjct: 21 CMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 27.5 bits (62), Expect = 1.7
Identities = 4/25 (16%), Positives = 4/25 (16%), Gaps = 5/25 (20%)
Query: 82 PVTTPCGHSYCWMCLDRCLDYSSSC 106
P TP Y
Sbjct: 84 PAITPDWR--TSEVQR---GYHQHS 103
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS
domain, PSI, protein structure initiative; 1.50A
{Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1
g.41.13.1 PDB: 2qh1_A
Length = 184
Score = 27.0 bits (60), Expect = 2.0
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 32 RKIPVL-----LTRILTEVDKLKNTEFQPSSLKIDLTRADSSDFDCILCRSTIWKPVTTP 86
+ V+ + I+T D + + + R C C + +PV
Sbjct: 107 ERCAVVDDPGRVVGIVTLTDLSRYLSRASITDILLSHRTKDYQHLCPKCGVGVLEPVYNE 166
Query: 87 CGHSYCWMCLDRCLDY 102
G + C + DY
Sbjct: 167 KGEIKVFRCSNPACDY 182
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein
4, UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.44.1.1
Length = 94
Score = 26.0 bits (57), Expect = 2.5
Identities = 8/35 (22%), Positives = 10/35 (28%), Gaps = 3/35 (8%)
Query: 65 ADSSDFDCILCRSTIWK---PVTTPCGHSYCWMCL 96
S C LC C +C +CL
Sbjct: 1 GSSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCL 35
>3qh6_A CT296; iron, modeling; HET: PG4; 1.80A {Chlamydia trachomatis}
PDB: 3qh7_A
Length = 157
Score = 25.5 bits (55), Expect = 7.5
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 11 LEYVHNSANILSDKFSLSSEARKIPVLLTRILTEVDKLKNTEFQ 54
Y N +IL + + S+ +++ L L EV +K+ Q
Sbjct: 12 KRYFQNHGHILFEGLAPVSDCKQLEAELKLFLKEVAVVKDRHLQ 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.412
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,167,259
Number of extensions: 111286
Number of successful extensions: 375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 93
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)