RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2479
(156 letters)
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 48.8 bits (116), Expect = 4e-09
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 49 KNTEFQPSSLKIDLTRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDY-SSSCP 107
L +D C +C + PV T C H +C +C+ RCL S CP
Sbjct: 3 SKIHLSTKLLAVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCP 62
Query: 108 LCKTSL 113
C+
Sbjct: 63 SCRYPC 68
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 48.1 bits (114), Expect = 6e-09
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 66 DSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDY-SSSCPLCKTSL 113
S+ C +C PCGH C CL + CP C+ +
Sbjct: 20 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 48.1 bits (114), Expect = 1e-08
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 61 DLTRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSS---SCPLCKTSL 113
++ A +C +C I +PV+T C H +C C+ + L+ CPLCK +
Sbjct: 13 NVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 44.9 bits (106), Expect = 7e-08
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 72 CILCRSTIWKPVT-TPCGHSYCWMCLDRCLDYSSSCPLCKTSLADV 116
C +C PC H++C++C+ R + + +CPLCK + V
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 44.5 bits (105), Expect = 8e-08
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 72 CILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSL 113
C C++ P PC H+ C CL+ CP+C+
Sbjct: 9 CQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPW 47
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 39.5 bits (92), Expect = 6e-06
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 69 DFDCILCRSTI----WKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSL 113
+C +C + + CGH + C+D L S+CPLC+ ++
Sbjct: 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 39.3 bits (91), Expect = 1e-05
Identities = 8/43 (18%), Positives = 13/43 (30%)
Query: 68 SDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLCK 110
F C + + PV G +Y + + LD
Sbjct: 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKS 49
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 37.4 bits (86), Expect = 6e-05
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 18/64 (28%)
Query: 66 DSSDFDCILCRSTIWKP------------------VTTPCGHSYCWMCLDRCLDYSSSCP 107
D +C +CR+ I C H++ + C+ R L CP
Sbjct: 18 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 77
Query: 108 LCKT 111
L
Sbjct: 78 LDNR 81
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 33.6 bits (76), Expect = 0.001
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 69 DFDCILCRSTIWKP-----VTTPCGHSYCWMCLDRCLDYSS-SCPLCKTSL 113
D C C++T ++ + CGH+ C C+D + +CP C T L
Sbjct: 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 33.2 bits (75), Expect = 0.003
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 69 DFDCILCRSTI-WKPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSLADVGILATTCIEKR 127
C C + + C H +C C+ C+ CP+C T + ++
Sbjct: 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT--GCPVCYTPAWIQDLKINRQLDSM 79
Query: 128 LKAINKTFELIDQSERS 144
++ +K L+ +E S
Sbjct: 80 IQLCSKLRNLLHDNELS 96
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 30.8 bits (69), Expect = 0.009
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 71 DCILCRSTIWK----PVTTPCGHSYCWMCLDRCLDYSS-SCPLCKTSLAD 115
+C LC + CG+ C C R + CP C+ +
Sbjct: 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 31.4 bits (70), Expect = 0.012
Identities = 6/42 (14%), Positives = 12/42 (28%)
Query: 68 SDFDCILCRSTIWKPVTTPCGHSYCWMCLDRCLDYSSSCPLC 109
+ + +P TP G +Y ++ L
Sbjct: 6 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPV 47
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 30.6 bits (68), Expect = 0.013
Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 7/53 (13%)
Query: 66 DSSDFDCILCRST-----IWKPVTTPCGHSYCWMCLDRCLD--YSSSCPLCKT 111
D C +C T + CL L +++C +C
Sbjct: 3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGV 55
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 31.5 bits (70), Expect = 0.014
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 85 TPCGHSYCWMCLDRCL-----DYSSSCPLCKT 111
T C H++ +CL D S CP CKT
Sbjct: 59 TKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 27.8 bits (61), Expect = 0.11
Identities = 4/43 (9%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 72 CILCRSTIW-KPVTTPCGHSYCWMCLDRCLDYSSSCPLCKTSL 113
C + ++ + L++ + + + P+ L
Sbjct: 3 CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPL 45
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 28.1 bits (62), Expect = 0.33
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 40 RILTEVDKLKNTEFQPSSLKIDLTRADSSDFDCILCRSTIWKPVTTPCGHSYCWMCLDRC 99
R+L E++K + ADS D TI P + + + +D
Sbjct: 8 RLLEELEKGEK---GFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCG 64
Query: 100 LDYSSSCPLC 109
+Y S P
Sbjct: 65 PNYPDSPPKV 74
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 24.7 bits (53), Expect = 2.9
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 11/55 (20%)
Query: 67 SSDFDCILCRSTIWK---PVTTPCGHSYCWMCLDRCLDYSS--------SCPLCK 110
S C LC C +C +CL + ++ SCP
Sbjct: 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57
>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 23.3 bits (50), Expect = 5.5
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 83 VTTPCGHSYCWMCLDRCLDYSSSCPLC 109
C +CW+CL + S+ C
Sbjct: 28 RNQNCKAEFCWVCLGPWEPHGSAWYNC 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.412
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 552,741
Number of extensions: 23659
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 31
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.2 bits)