Query psy248
Match_columns 283
No_of_seqs 263 out of 1978
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 17:20:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy248.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/248hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0372|consensus 100.0 1.5E-75 3.2E-80 516.3 8.9 242 41-283 27-303 (303)
2 KOG0373|consensus 100.0 1.3E-70 2.8E-75 478.9 13.9 241 42-283 31-306 (306)
3 KOG0371|consensus 100.0 9.8E-65 2.1E-69 450.2 11.5 241 42-283 45-319 (319)
4 PTZ00239 serine/threonine prot 100.0 2.8E-63 6E-68 461.1 21.3 249 35-283 20-303 (303)
5 KOG0374|consensus 100.0 4.1E-63 8.8E-68 463.6 16.7 231 35-266 36-303 (331)
6 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 4.3E-62 9.3E-67 450.2 19.4 234 34-267 18-285 (285)
7 cd07420 MPP_RdgC Drosophila me 100.0 3.9E-62 8.4E-67 455.9 19.2 229 35-264 24-321 (321)
8 PTZ00480 serine/threonine-prot 100.0 2.6E-61 5.6E-66 450.0 20.1 235 34-269 35-304 (320)
9 PTZ00244 serine/threonine-prot 100.0 1.4E-60 3E-65 441.5 18.5 229 35-265 29-293 (294)
10 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 2.4E-60 5.1E-65 440.1 19.4 231 34-265 26-291 (293)
11 cd07417 MPP_PP5_C PP5, C-termi 100.0 1.7E-60 3.7E-65 444.9 17.9 233 35-269 33-307 (316)
12 cd07416 MPP_PP2B PP2B, metallo 100.0 2E-59 4.3E-64 436.3 19.7 234 34-269 19-300 (305)
13 smart00156 PP2Ac Protein phosp 100.0 3E-59 6.5E-64 428.8 19.8 229 37-266 7-270 (271)
14 cd07419 MPP_Bsu1_C Arabidopsis 100.0 9.6E-57 2.1E-61 419.5 19.3 232 34-265 24-311 (311)
15 cd07418 MPP_PP7 PP7, metalloph 100.0 9.3E-57 2E-61 426.2 19.4 232 35-266 39-366 (377)
16 KOG0375|consensus 100.0 2E-57 4.4E-62 418.6 7.1 231 37-269 67-345 (517)
17 KOG0377|consensus 100.0 6.1E-48 1.3E-52 362.9 8.0 212 55-266 162-432 (631)
18 KOG0376|consensus 100.0 2.3E-44 5E-49 344.0 8.8 216 55-271 211-463 (476)
19 cd00144 MPP_PPP_family phospho 100.0 6.2E-30 1.4E-34 226.1 16.3 186 61-251 1-224 (225)
20 cd07425 MPP_Shelphs Shewanella 99.9 6.2E-22 1.3E-26 175.3 12.7 174 61-237 1-197 (208)
21 PRK13625 bis(5'-nucleosyl)-tet 99.9 1.4E-20 3E-25 170.5 15.1 107 58-166 1-129 (245)
22 cd07413 MPP_PA3087 Pseudomonas 99.8 1.1E-19 2.4E-24 162.4 14.1 115 61-177 2-151 (222)
23 PRK11439 pphA serine/threonine 99.8 1.2E-19 2.7E-24 161.5 11.2 175 56-239 15-208 (218)
24 cd07423 MPP_PrpE Bacillus subt 99.8 3.5E-19 7.6E-24 160.0 14.2 106 58-166 1-126 (234)
25 TIGR00668 apaH bis(5'-nucleosy 99.7 5.4E-18 1.2E-22 155.8 9.2 103 59-166 2-110 (279)
26 cd07422 MPP_ApaH Escherichia c 99.7 6.5E-18 1.4E-22 154.2 8.9 103 60-166 1-108 (257)
27 PRK00166 apaH diadenosine tetr 99.7 2.5E-17 5.5E-22 151.7 9.9 105 58-166 1-110 (275)
28 PRK09968 serine/threonine-spec 99.7 1.8E-17 4E-22 147.6 8.5 157 57-219 14-191 (218)
29 cd07424 MPP_PrpA_PrpB PrpA and 99.7 2.5E-16 5.5E-21 138.8 9.5 103 58-166 1-114 (207)
30 cd07421 MPP_Rhilphs Rhilph pho 99.7 1.2E-16 2.6E-21 147.6 7.5 74 59-132 3-83 (304)
31 PHA02239 putative protein phos 99.7 2.7E-16 5.8E-21 141.9 9.4 74 58-132 1-76 (235)
32 PF00149 Metallophos: Calcineu 99.1 7.3E-11 1.6E-15 94.9 5.8 77 59-135 2-84 (200)
33 cd00841 MPP_YfcE Escherichia c 99.1 1.7E-09 3.7E-14 90.3 12.4 60 59-130 1-60 (155)
34 PF12850 Metallophos_2: Calcin 99.0 2.6E-09 5.6E-14 88.3 10.6 152 58-253 1-152 (156)
35 PRK09453 phosphodiesterase; Pr 98.9 1.7E-09 3.7E-14 93.3 6.9 68 58-129 1-76 (182)
36 TIGR00040 yfcE phosphoesterase 98.8 4.6E-08 9.9E-13 82.3 11.9 63 58-129 1-64 (158)
37 cd07379 MPP_239FB Homo sapiens 98.8 3.3E-08 7.2E-13 81.0 10.2 118 59-223 1-120 (135)
38 cd07404 MPP_MS158 Microscilla 98.8 1.5E-08 3.2E-13 85.7 8.1 67 60-129 1-68 (166)
39 cd07392 MPP_PAE1087 Pyrobaculu 98.7 7.6E-08 1.7E-12 81.9 10.3 66 60-131 1-67 (188)
40 cd00838 MPP_superfamily metall 98.7 2.2E-07 4.7E-12 72.9 10.0 117 61-223 1-119 (131)
41 cd07394 MPP_Vps29 Homo sapiens 98.6 7.8E-07 1.7E-11 77.0 13.2 153 59-265 1-166 (178)
42 cd07388 MPP_Tt1561 Thermus the 98.6 1.3E-07 2.8E-12 85.0 7.5 71 58-129 5-75 (224)
43 PRK05340 UDP-2,3-diacylglucosa 98.6 1.6E-06 3.4E-11 78.2 14.1 193 58-263 1-238 (241)
44 cd07399 MPP_YvnB Bacillus subt 98.6 2.8E-06 6.1E-11 75.3 15.4 189 59-265 2-213 (214)
45 cd07397 MPP_DevT Myxococcus xa 98.6 7.4E-07 1.6E-11 80.7 11.5 147 59-219 2-208 (238)
46 TIGR01854 lipid_A_lpxH UDP-2,3 98.6 4.5E-07 9.8E-12 81.2 10.0 187 61-256 2-230 (231)
47 cd07400 MPP_YydB Bacillus subt 98.4 5.1E-06 1.1E-10 68.2 10.9 116 60-223 1-129 (144)
48 COG0639 ApaH Diadenosine tetra 98.3 3.2E-06 6.9E-11 68.0 7.4 109 131-240 3-154 (155)
49 cd07403 MPP_TTHA0053 Thermus t 98.2 1.1E-05 2.3E-10 66.2 9.1 107 61-223 1-107 (129)
50 cd07385 MPP_YkuE_C Bacillus su 98.1 4.7E-06 1E-10 73.2 6.4 71 58-130 2-77 (223)
51 PRK11340 phosphodiesterase Yae 98.1 8.7E-06 1.9E-10 74.8 8.2 71 57-129 49-125 (271)
52 PRK11148 cyclic 3',5'-adenosin 98.0 0.00051 1.1E-08 63.0 17.6 70 58-129 15-98 (275)
53 TIGR03729 acc_ester putative p 98.0 1.4E-05 3.1E-10 71.7 6.9 68 59-129 1-74 (239)
54 cd07395 MPP_CSTP1 Homo sapiens 97.9 0.0008 1.7E-08 60.9 16.6 71 59-129 6-99 (262)
55 cd08165 MPP_MPPE1 human MPPE1 97.9 9.2E-05 2E-09 62.6 9.7 95 83-222 37-137 (156)
56 COG0622 Predicted phosphoester 97.9 0.00029 6.3E-09 60.9 12.8 164 58-267 2-167 (172)
57 cd07396 MPP_Nbla03831 Homo sap 97.9 4.1E-05 8.9E-10 70.0 7.6 73 59-131 2-88 (267)
58 cd07383 MPP_Dcr2 Saccharomyces 97.9 0.00027 5.8E-09 61.6 12.1 69 59-127 4-87 (199)
59 TIGR00619 sbcd exonuclease Sbc 97.8 5.3E-05 1.2E-09 69.0 7.5 73 58-130 1-89 (253)
60 cd07402 MPP_GpdQ Enterobacter 97.7 0.00013 2.7E-09 64.9 8.0 69 59-129 1-83 (240)
61 PHA02546 47 endonuclease subun 97.7 8E-05 1.7E-09 70.7 7.1 73 58-130 1-90 (340)
62 cd00840 MPP_Mre11_N Mre11 nucl 97.6 0.00013 2.7E-09 63.8 6.6 74 59-132 1-92 (223)
63 cd00844 MPP_Dbr1_N Dbr1 RNA la 97.6 0.00017 3.6E-09 66.4 7.2 71 60-130 1-87 (262)
64 cd07384 MPP_Cdc1_like Saccharo 97.5 0.00096 2.1E-08 57.3 10.0 49 82-130 43-101 (171)
65 TIGR00024 SbcD_rel_arch putati 97.5 0.00041 8.9E-09 62.3 7.6 69 58-130 15-103 (225)
66 cd07390 MPP_AQ1575 Aquifex aeo 97.5 0.00027 5.8E-09 60.2 6.0 66 61-131 2-84 (168)
67 TIGR00583 mre11 DNA repair pro 97.4 0.00053 1.1E-08 66.8 8.0 73 58-130 4-124 (405)
68 cd07391 MPP_PF1019 Pyrococcus 97.3 0.0005 1.1E-08 58.7 6.2 57 73-129 30-88 (172)
69 cd07393 MPP_DR1119 Deinococcus 97.3 0.00055 1.2E-08 61.4 6.7 44 195-240 181-227 (232)
70 COG2908 Uncharacterized protei 97.3 0.00068 1.5E-08 61.2 6.8 181 62-257 2-229 (237)
71 COG1409 Icc Predicted phosphoh 97.3 0.0012 2.7E-08 59.5 8.5 73 59-132 2-81 (301)
72 COG2129 Predicted phosphoester 97.3 0.025 5.3E-07 50.8 16.3 192 57-263 3-224 (226)
73 cd07380 MPP_CWF19_N Schizosacc 97.2 0.0021 4.6E-08 54.3 9.0 116 61-218 1-121 (150)
74 KOG0376|consensus 97.2 2.4E-05 5.1E-10 76.4 -3.7 179 59-240 47-298 (476)
75 cd08166 MPP_Cdc1_like_1 unchar 97.2 0.0026 5.6E-08 56.1 9.2 106 84-225 42-153 (195)
76 cd07398 MPP_YbbF-LpxH Escheric 97.2 0.00075 1.6E-08 58.9 5.6 28 195-222 177-204 (217)
77 PRK10966 exonuclease subunit S 97.1 0.001 2.3E-08 64.8 6.7 84 59-146 2-101 (407)
78 PRK04036 DNA polymerase II sma 97.0 0.0019 4E-08 64.7 7.9 73 56-130 242-344 (504)
79 cd07401 MPP_TMEM62_N Homo sapi 97.0 0.0018 4E-08 58.9 7.1 72 60-131 2-91 (256)
80 cd07386 MPP_DNA_pol_II_small_a 96.9 0.0016 3.5E-08 58.6 5.9 67 61-129 2-94 (243)
81 cd00839 MPP_PAPs purple acid p 96.9 0.0013 2.8E-08 60.3 4.6 70 58-131 5-83 (294)
82 PF06874 FBPase_2: Firmicute f 96.8 0.0055 1.2E-07 62.1 8.4 69 195-265 507-585 (640)
83 cd08163 MPP_Cdc1 Saccharomyces 96.7 0.02 4.3E-07 52.5 11.4 33 193-227 202-234 (257)
84 COG4186 Predicted phosphoester 96.6 0.01 2.3E-07 50.5 7.6 49 83-135 44-92 (186)
85 cd08164 MPP_Ted1 Saccharomyces 96.4 0.0074 1.6E-07 53.1 5.9 64 65-128 24-110 (193)
86 COG1408 Predicted phosphohydro 96.2 0.012 2.6E-07 54.7 6.6 73 58-132 45-121 (284)
87 COG0420 SbcD DNA repair exonuc 96.1 0.018 3.8E-07 55.5 7.5 74 59-132 2-91 (390)
88 cd00845 MPP_UshA_N_like Escher 96.1 0.013 2.7E-07 52.6 5.9 65 59-128 2-81 (252)
89 PF14582 Metallophos_3: Metall 95.4 0.019 4.1E-07 51.9 4.0 73 58-130 6-103 (255)
90 PLN02533 probable purple acid 95.3 0.026 5.7E-07 55.4 5.2 70 58-130 140-212 (427)
91 cd07410 MPP_CpdB_N Escherichia 94.9 0.042 9.1E-07 50.3 5.2 65 59-128 2-94 (277)
92 COG1407 Predicted ICC-like pho 94.8 0.1 2.2E-06 47.3 7.2 78 57-137 19-118 (235)
93 cd07378 MPP_ACP5 Homo sapiens 94.8 0.07 1.5E-06 48.4 6.3 70 59-129 2-83 (277)
94 KOG3662|consensus 94.6 0.059 1.3E-06 52.4 5.6 58 71-128 79-143 (410)
95 cd07412 MPP_YhcR_N Bacillus su 93.2 0.11 2.3E-06 48.2 4.3 65 59-128 2-87 (288)
96 cd07408 MPP_SA0022_N Staphyloc 93.2 0.15 3.2E-06 46.3 5.1 65 59-128 2-81 (257)
97 cd00842 MPP_ASMase acid sphing 93.1 0.27 6E-06 45.2 6.8 72 60-132 40-125 (296)
98 cd07411 MPP_SoxB_N Thermus the 90.8 0.47 1E-05 43.2 5.4 51 72-128 37-94 (264)
99 cd07409 MPP_CD73_N CD73 ecto-5 90.3 0.74 1.6E-05 42.4 6.3 25 195-219 193-218 (281)
100 PRK09419 bifunctional 2',3'-cy 89.2 0.48 1E-05 52.2 4.8 66 58-128 661-735 (1163)
101 PF04042 DNA_pol_E_B: DNA poly 87.4 1.1 2.5E-05 38.9 5.2 72 60-131 1-93 (209)
102 KOG3325|consensus 87.4 3.4 7.3E-05 35.2 7.6 118 60-223 3-123 (183)
103 KOG2863|consensus 86.4 1.2 2.6E-05 42.9 4.9 74 58-131 1-90 (456)
104 KOG1378|consensus 86.2 1.6 3.6E-05 43.1 6.0 34 197-230 322-355 (452)
105 KOG1432|consensus 86.1 1.3 2.9E-05 42.3 5.1 73 59-131 55-149 (379)
106 TIGR00282 metallophosphoestera 85.9 1.6 3.5E-05 40.3 5.5 67 58-129 1-71 (266)
107 cd07406 MPP_CG11883_N Drosophi 84.9 2.2 4.7E-05 38.7 5.9 56 68-128 21-82 (257)
108 COG1768 Predicted phosphohydro 84.0 2.7 5.9E-05 36.9 5.7 97 58-166 17-116 (230)
109 cd07405 MPP_UshA_N Escherichia 83.1 1.9 4.2E-05 39.8 4.8 65 59-128 2-86 (285)
110 COG0737 UshA 5'-nucleotidase/2 82.5 1.6 3.6E-05 43.6 4.3 67 58-129 27-115 (517)
111 KOG2476|consensus 81.4 4.9 0.00011 39.9 6.9 68 58-126 6-75 (528)
112 cd07407 MPP_YHR202W_N Saccharo 81.2 2.2 4.9E-05 39.5 4.5 66 59-129 7-97 (282)
113 cd08162 MPP_PhoA_N Synechococc 76.3 4.7 0.0001 37.9 5.1 64 60-128 3-90 (313)
114 PTZ00235 DNA polymerase epsilo 76.3 9.8 0.00021 35.7 7.0 73 57-129 27-122 (291)
115 PTZ00422 glideosome-associated 76.0 6 0.00013 38.7 5.8 72 58-129 27-109 (394)
116 PRK09420 cpdB bifunctional 2', 74.7 4.3 9.3E-05 42.1 4.7 66 58-128 26-121 (649)
117 cd07382 MPP_DR1281 Deinococcus 74.2 8 0.00017 35.5 5.9 65 59-128 1-69 (255)
118 COG3855 Fbp Uncharacterized pr 73.4 2.9 6.2E-05 41.6 2.8 43 85-132 191-233 (648)
119 TIGR01390 CycNucDiestase 2',3' 72.8 4.9 0.00011 41.5 4.6 65 59-128 4-98 (626)
120 PRK09419 bifunctional 2',3'-cy 72.0 4.6 0.0001 44.6 4.4 23 197-219 257-280 (1163)
121 COG1311 HYS2 Archaeal DNA poly 68.9 15 0.00033 36.7 6.7 52 209-265 420-472 (481)
122 cd07387 MPP_PolD2_C PolD2 (DNA 66.1 17 0.00036 33.5 6.1 50 209-263 205-257 (257)
123 KOG0918|consensus 64.8 0.61 1.3E-05 45.3 -3.6 161 86-255 49-250 (476)
124 PRK11907 bifunctional 2',3'-cy 64.1 9.3 0.0002 40.8 4.6 66 58-128 116-212 (814)
125 KOG3947|consensus 62.0 13 0.00028 34.7 4.5 66 56-131 60-128 (305)
126 TIGR01530 nadN NAD pyrophospha 61.9 16 0.00035 37.1 5.7 51 73-128 37-93 (550)
127 KOG2310|consensus 60.2 26 0.00056 35.7 6.6 155 58-217 14-248 (646)
128 PRK09558 ushA bifunctional UDP 55.5 16 0.00035 37.0 4.4 65 59-128 36-120 (551)
129 KOG2679|consensus 51.2 9.4 0.0002 35.7 1.8 68 58-129 44-126 (336)
130 PRK09418 bifunctional 2',3'-cy 47.0 26 0.00057 37.3 4.5 66 58-128 40-141 (780)
131 PF10083 DUF2321: Uncharacteri 46.9 6.5 0.00014 33.5 0.0 48 192-245 20-76 (158)
132 PF02875 Mur_ligase_C: Mur lig 44.2 68 0.0015 23.8 5.4 69 58-126 12-82 (91)
133 PF12641 Flavodoxin_3: Flavodo 39.1 1.6E+02 0.0034 25.0 7.3 58 61-121 2-72 (160)
134 smart00854 PGA_cap Bacterial c 37.9 58 0.0013 28.9 4.8 33 206-240 204-236 (239)
135 cd07381 MPP_CapA CapA and rela 32.1 84 0.0018 27.8 4.8 36 203-240 203-238 (239)
136 PF09637 Med18: Med18 protein; 32.0 83 0.0018 28.5 4.8 74 195-271 139-215 (250)
137 PF13258 DUF4049: Domain of un 31.9 56 0.0012 30.0 3.6 15 115-129 126-140 (318)
138 PRK10773 murF UDP-N-acetylmura 30.8 1.8E+02 0.0039 28.5 7.3 66 58-124 325-392 (453)
139 TIGR00282 metallophosphoestera 28.2 70 0.0015 29.5 3.7 39 87-129 2-41 (266)
140 PF04263 TPK_catalytic: Thiami 28.2 1.6E+02 0.0036 23.7 5.5 63 59-122 37-121 (123)
141 PF06490 FleQ: Flagellar regul 28.0 1.7E+02 0.0036 22.9 5.4 64 59-129 1-81 (109)
142 PF09587 PGA_cap: Bacterial ca 27.5 1.1E+02 0.0024 27.4 4.8 38 201-240 210-247 (250)
143 TIGR03729 acc_ester putative p 26.1 84 0.0018 27.8 3.7 29 193-221 195-223 (239)
144 KOG3153|consensus 25.5 2E+02 0.0044 26.2 5.9 97 13-122 38-162 (250)
145 KOG3339|consensus 23.8 2.7E+02 0.0058 24.8 6.1 48 86-138 40-87 (211)
146 cd00839 MPP_PAPs purple acid p 22.9 1.7E+02 0.0036 26.4 5.1 26 195-220 181-206 (294)
147 PF09949 DUF2183: Uncharacteri 22.8 2.5E+02 0.0055 21.9 5.4 44 70-122 52-95 (100)
148 cd07382 MPP_DR1281 Deinococcus 22.7 73 0.0016 29.2 2.7 40 87-129 1-40 (255)
149 PF06874 FBPase_2: Firmicute f 20.4 91 0.002 32.4 3.0 42 86-132 186-227 (640)
No 1
>KOG0372|consensus
Probab=100.00 E-value=1.5e-75 Score=516.34 Aligned_cols=242 Identities=56% Similarity=1.088 Sum_probs=230.9
Q ss_pred cchhhhhcccccccccCCCEEEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEE
Q psy248 41 TSSELISTQYITTASCCNPLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRIT 120 (283)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~i~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~ 120 (283)
+.+|++.++ .++..+..|++||||||||++||+++|+..|.++.++|+|||||||||..|+|++.+|++||++||++|.
T Consensus 27 ~~~eiL~~E-~NV~~i~tPvtvcGDIHGQf~Dllelf~igG~~~~t~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~rit 105 (303)
T KOG0372|consen 27 KVREILVEE-SNVQRIDTPVTVCGDIHGQFYDLLELFRIGGDVPETNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRIT 105 (303)
T ss_pred HHHHHHhcC-CCceecCCCcEEeecccchHHHHHHHHHhCCCCCCCceEeecchhccccchHHHHHHHHHHhhcCcceeE
Confidence 445555554 4677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcccccchhccCchhHHHHhhCCCcchhhHhhHhhccCcchh----------------------------------
Q psy248 121 LLRGNHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV---------------------------------- 166 (283)
Q Consensus 121 llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~f~~LPlaai---------------------------------- 166 (283)
+||||||++.+++.|||++||.+|||..++|+.++++|++|||||+
T Consensus 106 LiRGNHEsRqitqvYGFY~EclrKYG~~~vWr~c~eiFdyL~l~aiid~kifCVHGGlSP~i~~lDqIr~lDR~~Eiph~ 185 (303)
T KOG0372|consen 106 LIRGNHESRQITQVYGFYDECLRKYGSANVWRYCTEIFDYLSLAAIIDGKIFCVHGGLSPSIQTLDQIRVLDRKQEVPHD 185 (303)
T ss_pred EeeccchhhhhhhhhhHHHHHHHHcCChHHHHHHHHHHHhhhHhheecCcEEEEcCCCCcchhhHHHHHHhhccccCCCC
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCcCCCCcccCCCCCceecChHHHHHHHHhcCceEEEeeeeeeeccceEeeCCeEEEEEcCCCCCccCCCe
Q psy248 167 SAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNI 246 (283)
Q Consensus 167 ~~~~dllWsdP~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~~y~~~~~N~ 246 (283)
+.+||+|||||.+..+|+.||||+||+||++++++|++.||++.|+|+||.+.+||++.|+++++|||||||||++|+|.
T Consensus 186 g~m~DllWSDPee~~g~~~SPRGaGylFG~dvv~~F~~~N~~~~I~RaHQLv~eGyk~~F~~~v~TVWSAPNYCYrCGN~ 265 (303)
T KOG0372|consen 186 GAMCDLLWSDPEEGPGWGLSPRGAGYLFGEDVVESFLEANGLSLICRAHQLVMEGYKWHFDEKVVTVWSAPNYCYRCGNV 265 (303)
T ss_pred CcchheeccCcccCCCcccCCCCccccccHHHHHHHHHhCChHHHHHHHHHHHhhHHHhcCCceEEEecCCchhhhcCCh
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCceeeEEEecCCCCCCCCCCCC-CCCCCC
Q psy248 247 ASILKFNSVDNRTPALFQAVPNEERVIPDRV-ITPYFL 283 (283)
Q Consensus 247 aavl~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 283 (283)
||||.+|++....|..|+++|.+.+..|+++ +.+|||
T Consensus 266 AsIl~lde~~~~~F~vFeaa~~~~~~~~~kk~~~~yFl 303 (303)
T KOG0372|consen 266 AAILELDEDLDKDFRVFEAAPQESRGIPAKKPIADYFL 303 (303)
T ss_pred HHheeeccccCcceEeeecchhhhcCCcccCcchhhcC
Confidence 9999999999999999999999988777666 678996
No 2
>KOG0373|consensus
Probab=100.00 E-value=1.3e-70 Score=478.89 Aligned_cols=241 Identities=69% Similarity=1.267 Sum_probs=231.9
Q ss_pred chhhhhcccccccccCCCEEEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEE
Q psy248 42 SSELISTQYITTASCCNPLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITL 121 (283)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~i~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~l 121 (283)
.+++++++ ..+.+++.|++|+||||||+.||+++|+..|.-|+++|||+|||||||..|+|++.+|+.||.+||.+|.+
T Consensus 31 v~d~L~eE-sNvqPV~tPVTvCGDIHGQFyDL~eLFrtgG~vP~tnYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITL 109 (306)
T KOG0373|consen 31 VKDILMEE-SNVQPVSTPVTVCGDIHGQFYDLLELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITL 109 (306)
T ss_pred HHHHHhhh-cCccccCCCeeEeeccchhHHHHHHHHHhcCCCCCcceEEeccccccccccHHHHHHHHHHhhcCCceeEE
Confidence 34455554 45668999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcccccchhccCchhHHHHhhCCCcchhhHhhHhhccCcchh----------------------------------h
Q psy248 122 LRGNHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV----------------------------------S 167 (283)
Q Consensus 122 lrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~f~~LPlaai----------------------------------~ 167 (283)
||||||++.++++|||++||+.|||..++|+.+.++|+.|++||+ +
T Consensus 110 lRGNHEsRqitqVYGFydECq~KYGnan~wkycckVFD~LtlaAiID~~vLCVHGGLSPdirtlDqir~i~R~qEiPh~G 189 (306)
T KOG0373|consen 110 LRGNHESRQITQVYGFYDECQNKYGNANVWKYCCKVFDFLTLAAIIDEKVLCVHGGLSPDIRTLDQIRLIERNQEIPHEG 189 (306)
T ss_pred eeccchhhhhhhhhhhHHHHHhhcCCchHHHHHHHHHhhhhHHHHhcCcEEEEcCCCCccceeHHHHHhHHhhccCCCCC
Confidence 999999999999999999999999999999999999999999999 7
Q ss_pred hhhhhccCCCcCCCCcccCCCCCceecChHHHHHHHHhcCceEEEeeeeeeeccceEeeCCe-EEEEEcCCCCCccCCCe
Q psy248 168 AFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGN-LVTIWSAPNYCYRCGNI 246 (283)
Q Consensus 168 ~~~dllWsdP~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~~~-~iTifSa~~y~~~~~N~ 246 (283)
.+||++||||.+.+.|..||||+|++||.+++.+|+..|++++|.|+||.|++||++.+++| ++|||||||||++|+|.
T Consensus 190 ~fcDlmWSDPedve~W~vSpRGAGwlFGskVt~eF~~iN~L~LicRaHQLV~EG~KymF~eK~lvTVWSAPNYCYRCGNv 269 (306)
T KOG0373|consen 190 PFCDLMWSDPEDVETWAVSPRGAGWLFGSKVTTEFNHINNLNLICRAHQLVQEGFKYMFDEKGLVTVWSAPNYCYRCGNV 269 (306)
T ss_pred CccceeccChhhhhhheeCCCCcceeechhhhHHHHhccchHHHHhHHHHHHhhHHhccCCCCEEEEecCCchhhhccCe
Confidence 88999999999999999999999999999999999999999999999999999999999888 99999999999999999
Q ss_pred EEEEEEeCCCceeeEEEecCCCCCCCCCCCCCCCCCC
Q psy248 247 ASILKFNSVDNRTPALFQAVPNEERVIPDRVITPYFL 283 (283)
Q Consensus 247 aavl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (283)
|+||.++++++.+++.|.++|...|..|++...+|||
T Consensus 270 Asi~~~d~~~~r~~k~F~avpd~~~~~p~r~~~pYFl 306 (306)
T KOG0373|consen 270 ASIMSFDDNLERETKIFSAVPDNSRVIPPRTRAPYFL 306 (306)
T ss_pred eeEEEecccCCccceeeeecCCccccCCCCCCCCCcC
Confidence 9999999999999999999999999999999999997
No 3
>KOG0371|consensus
Probab=100.00 E-value=9.8e-65 Score=450.23 Aligned_cols=241 Identities=51% Similarity=0.936 Sum_probs=231.1
Q ss_pred chhhhhcccccccccCCCEEEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEE
Q psy248 42 SSELISTQYITTASCCNPLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITL 121 (283)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~i~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~l 121 (283)
.++++..+ -.+.+++.|++||||+|||+++|+++|+..|..++.+|+|+|||||||++|+|++.+|.++|++||++|.+
T Consensus 45 a~~~L~~e-~nV~~v~~pvtvcGDvHGqf~dl~ELfkiGG~~pdtnylfmGDyvdrGy~SvetVS~lva~Kvry~~rvti 123 (319)
T KOG0371|consen 45 AKEILDKE-ENVQPVNCPVTVCGDVHGQFHDLIELFKIGGLAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTI 123 (319)
T ss_pred HHHHHhcc-ccccccccceEEecCcchhHHHHHHHHHccCCCCCcceeeeeeecccccchHHHHHHHHHhhccccceeEE
Confidence 44444444 35558899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcccccchhccCchhHHHHhhCCCcchhhHhhHhhccCcchh----------------------------------h
Q psy248 122 LRGNHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV----------------------------------S 167 (283)
Q Consensus 122 lrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~f~~LPlaai----------------------------------~ 167 (283)
||||||+++++++|||++||.+|||...+|+.|.+.|+++|++|+ +
T Consensus 124 lrGNHEsrqitqvygfydeclRkyg~anvw~~Ftdlfdy~P~tali~~~ifc~HGgLspsi~tld~~r~~dr~~evpheg 203 (319)
T KOG0371|consen 124 LRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESKIFCLHGGLSPSIDTLDLIRLLDRIQEVPHEG 203 (319)
T ss_pred ecCchHHHHHHHHHhhHHHHHhhcccccchHHhhhhhhccchHhhhccceeeccCCcCcccchHHHHHHHHHhhcccCCC
Confidence 999999999999999999999999999999999999999999998 7
Q ss_pred hhhhhccCCCcCCCCcccCCCCCceecChHHHHHHHHhcCceEEEeeeeeeeccceEeeCCeEEEEEcCCCCCccCCCeE
Q psy248 168 AFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIA 247 (283)
Q Consensus 168 ~~~dllWsdP~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~~y~~~~~N~a 247 (283)
.+||+|||||.+.-+|..+|||+|+.||++..+.|-.+||+++|-|+||.+.+||.|.+...++|||||||||++|+|.|
T Consensus 204 pmcDlLwsdpddr~gwg~sprgag~tfg~di~~~fn~~n~lslisRahqlvm~g~nW~~~~~~vtiFSapnycYrcgn~a 283 (319)
T KOG0371|consen 204 PMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHKNGLSLISRAHQLVMEGYNWYHLWNVVTIFSAPNYCYRCGNQA 283 (319)
T ss_pred ChhheeccCcccCCCCCCCCCCCCcccchhhHHHhhccCCchHhHHHHHHHhcccceeeecceeEEccCCchhhccccHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCceeeEEEecCCCCCCCCCCCCCCCCCC
Q psy248 248 SILKFNSVDNRTPALFQAVPNEERVIPDRVITPYFL 283 (283)
Q Consensus 248 avl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (283)
|++.+|++...+|.+|+|+|.+.++..++++|||||
T Consensus 284 ~i~e~d~~~~~~f~q~~psp~k~e~~vtr~tpDYfL 319 (319)
T KOG0371|consen 284 AIMERDDTKNYDFLQFDPSPRKVEPDVTRKTPDYFL 319 (319)
T ss_pred HHhhhhhccCcceEEecCCccccccccccCCCCCcC
Confidence 999999999999999999999999999999999997
No 4
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=2.8e-63 Score=461.11 Aligned_cols=249 Identities=55% Similarity=0.978 Sum_probs=226.8
Q ss_pred cccccccchhhhhcccccccccCCCEEEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhc
Q psy248 35 ETISYLTSSELISTQYITTASCCNPLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKAR 114 (283)
Q Consensus 35 ~~i~~l~~~~~~~~~~~~~~~~~~~i~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~ 114 (283)
++...+.+...+..++..++++..|++|+||||||+.+|.++|+..+.++.++++|||||||||++|+|++.+++++|+.
T Consensus 20 ~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~ 99 (303)
T PTZ00239 20 DLKLICERAKEIFLEESNVQPVRAPVNVCGDIHGQFYDLQALFKEGGDIPNANYIFIGDFVDRGYNSVETMEYLLCLKVK 99 (303)
T ss_pred HHHHHHHHHHHHHHhCCCeEecCCCEEEEEeCCCCHHHHHHHHHhcCCCCCceEEEeeeEcCCCCCHHHHHHHHHHhhhc
Confidence 44445544444444445667889999999999999999999999999988999999999999999999999999999999
Q ss_pred CCCcEEEeCCCcccccchhccCchhHHHHhhCCCcchhhHhhHhhccCcchh----------------------------
Q psy248 115 WPHRITLLRGNHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV---------------------------- 166 (283)
Q Consensus 115 ~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~f~~LPlaai---------------------------- 166 (283)
+|.++++||||||.+.++..|||.+|+.++|+...+|..++++|++||+||+
T Consensus 100 ~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~~~~~~~~~~f~~LPlaaii~~~i~cvHgGi~p~~~~l~~i~~i~r~ 179 (303)
T PTZ00239 100 YPGNITLLRGNHESRQCTQVYGFYEEILRKYGNSNPWRLFMDVFDCLPLAALIEGQILCVHGGLSPDMRTIDQIRTIDRK 179 (303)
T ss_pred CCCcEEEEecccchHHHhhhcChHHHHHHHhcChhHHHHHHHHHHhCchheEEcCeEEEEcCccCcccccHhhhccccCC
Confidence 9999999999999999999999999999999977899999999999999996
Q ss_pred ------hhhhhhccCCCcCCCCcccCCCCCceecChHHHHHHHHhcCceEEEeeeeeeeccceEeeC-CeEEEEEcCCCC
Q psy248 167 ------SAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFD-GNLVTIWSAPNY 239 (283)
Q Consensus 167 ------~~~~dllWsdP~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~-~~~iTifSa~~y 239 (283)
++++|+|||||.+.++|.+|+||.|++||++++++||++|++++||||||++++||++.++ ++|+||||||+|
T Consensus 180 ~~~~~~~~~~dllWsDP~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~iTvfSa~~Y 259 (303)
T PTZ00239 180 IEIPHEGPFCDLMWSDPEEVEYWAVNSRGAGYLFGAKVTKEFCRLNDLTLICRAHQLVMEGYKYWFPDQNLVTVWSAPNY 259 (303)
T ss_pred CCCCCCCCceeeEecCccccCCCccCCCCCccccCHHHHHHHHHHCCCcEEEEcChhhccceEEEeCCCeEEEEECCCcc
Confidence 4568999999998889999999999999999999999999999999999999999998765 459999999999
Q ss_pred CccCCCeEEEEEEeCCCceeeEEEecCCCCCCCCCCCCCCCCCC
Q psy248 240 CYRCGNIASILKFNSVDNRTPALFQAVPNEERVIPDRVITPYFL 283 (283)
Q Consensus 240 ~~~~~N~aavl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (283)
|+..+|+||+|.++++.+++|++|+++|++.+..+.+..+.||+
T Consensus 260 ~~~~~N~~ail~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (303)
T PTZ00239 260 CYRCGNIASILCLDENLQQTWKTFKEVPESAKSINPKNVLPYFL 303 (303)
T ss_pred cCCCCceEEEEEECCCCcEeeEEeeCCCcccccCcccCCCCCCC
Confidence 99999999999999999999999999999877777777778885
No 5
>KOG0374|consensus
Probab=100.00 E-value=4.1e-63 Score=463.63 Aligned_cols=231 Identities=39% Similarity=0.734 Sum_probs=216.8
Q ss_pred cccccc-cchhhhhcccccccccCCCEEEEcCCCCCHHHHHHHHHhcC-CCCCCeEEEeCCccCCCCCcHHHHHHHHHhh
Q psy248 35 ETISYL-TSSELISTQYITTASCCNPLYKESDVFFNFYDLEQLFRTGG-QVPDTNYIFMGDFVDRGYYSLETLTRLLTLK 112 (283)
Q Consensus 35 ~~i~~l-~~~~~~~~~~~~~~~~~~~i~VvGDiHG~~~~L~~ll~~~~-~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk 112 (283)
++...+ ..++++..++ +++.+++||.||||||||+.||+++|...| +|++.+|||||||||||++|+|++.+|+++|
T Consensus 36 ei~~l~~~~~~if~~~~-~l~e~~aPV~i~GDiHGq~~DLlrlf~~~g~~pp~~~ylFLGDYVDRG~~slE~i~LL~a~K 114 (331)
T KOG0374|consen 36 EIIKLCDKAREIFLSQP-TLLELSAPVKIVGDIHGQFGDLLRLFDLLGSFPPDQNYVFLGDYVDRGKQSLETICLLFALK 114 (331)
T ss_pred HHHHHHHHHHHHhcCCC-ceeecCCCEEEEccCcCCHHHHHHHHHhcCCCCCcccEEEecccccCCccceEEeehhhhhh
Confidence 444444 3455555554 667999999999999999999999999999 9999999999999999999999999999999
Q ss_pred hcCCCcEEEeCCCcccccchhccCchhHHHHhhCCCcchhhHhhHhhccCcchh--------------------------
Q psy248 113 ARWPHRITLLRGNHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV-------------------------- 166 (283)
Q Consensus 113 ~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~f~~LPlaai-------------------------- 166 (283)
++||+++++||||||.+.++..|||++||.++|+...+|++|+++|++||+||+
T Consensus 115 i~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~~~~w~~F~~~f~~mp~~a~i~~kI~CmhGGlsp~l~~~~~i~~i~ 194 (331)
T KOG0374|consen 115 IKYPENVFLLRGNHECASINRIYGFYDECKRRYGEIKLWKAFNDAFNCLPLAALIDGKILCMHGGLSPHLKSLDQIRAIP 194 (331)
T ss_pred hhCCceEEEeccccccccccceeeeHHHHHHhcchHHHHHHHHHHHhhCchhheecceEEEecCCCChhhcChHHHhhcc
Confidence 999999999999999999999999999999999966999999999999999999
Q ss_pred --------hhhhhhccCCCcC-CCCcccCCCCCceecChHHHHHHHHhcCceEEEeeeeeeeccceEeeCCeEEEEEcCC
Q psy248 167 --------SAFCDLVWSDPAE-VETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAP 237 (283)
Q Consensus 167 --------~~~~dllWsdP~~-~~~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~ 237 (283)
++++|++||||.. ..+|.+|.||.++.||++++++||+++++++|+||||++++||+++++++++||||||
T Consensus 195 rp~~~~~~gll~DLlWsdp~~~~~g~~~n~Rg~s~~fg~~~v~~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIFSAP 274 (331)
T KOG0374|consen 195 RPTDSPDKGLLCDLLWSDPDDDVPGWEENDRGVSFTFGPAVVEDFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIFSAP 274 (331)
T ss_pred CCcCCCccceeeeeeecCCCCCCCCcccCCCceeeEecHHHHHHHHHHhCcceEEEcCccccccceEecCceEEEEecCc
Confidence 5789999999997 6899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCeEEEEEEeCCCceeeEEEecC
Q psy248 238 NYCYRCGNIASILKFNSVDNRTPALFQAV 266 (283)
Q Consensus 238 ~y~~~~~N~aavl~i~~~~~~~~~~~~~~ 266 (283)
+||+.+.|.||+|.||+++.++|+.++|.
T Consensus 275 ~Ycg~~~n~gavm~Vd~~l~~sf~~l~p~ 303 (331)
T KOG0374|consen 275 NYCGEFDNAGAVMRVDKNLKCSFVILRPE 303 (331)
T ss_pred hhccccCCceEEEEECCCCeEEEEEeccc
Confidence 99999999999999999999999999994
No 6
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=4.3e-62 Score=450.17 Aligned_cols=234 Identities=58% Similarity=1.087 Sum_probs=216.4
Q ss_pred ccccccccchhhhhcccccccccCCCEEEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhh
Q psy248 34 GETISYLTSSELISTQYITTASCCNPLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKA 113 (283)
Q Consensus 34 ~~~i~~l~~~~~~~~~~~~~~~~~~~i~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~ 113 (283)
.++...+.+...+..++..+++++.|++|+|||||++.+|.++|+..++++.++|||||||||||++|+|++.+++++|+
T Consensus 18 ~~~~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~dL~~ll~~~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~ 97 (285)
T cd07415 18 SEVKSLCEKAKEILVKESNVQRVRSPVTVCGDIHGQFYDLLELFRVGGDPPDTNYLFLGDYVDRGYYSVETFLLLLALKV 97 (285)
T ss_pred HHHHHHHHHHHHHHHhCCCEEecCCCEEEEEeCCCCHHHHHHHHHHcCCCCCCeEEEEeEECCCCcCHHHHHHHHHHHhh
Confidence 34455554444444444567788999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEeCCCcccccchhccCchhHHHHhhCCCcchhhHhhHhhccCcchh---------------------------
Q psy248 114 RWPHRITLLRGNHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV--------------------------- 166 (283)
Q Consensus 114 ~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~f~~LPlaai--------------------------- 166 (283)
.+|.++++||||||.+.++..|||.+||..+|+...+|..+.++|++||+||+
T Consensus 98 ~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~~~l~~~~~~~f~~lPlaaii~~~i~cvHgGi~p~~~~~~~i~~i~r 177 (285)
T cd07415 98 RYPDRITLLRGNHESRQITQVYGFYDECLRKYGNANVWKYCTDLFDYLPLAALIDNQIFCVHGGLSPSIDTLDQIRAIDR 177 (285)
T ss_pred cCCCcEEEEecccchHhhhhhcchhHHHHHhcCchHHHHHHHHHHHHhHHHhEeCCeEEEEcCCCCCCcccHHHhhcccC
Confidence 99999999999999999999999999999999977899999999999999996
Q ss_pred -------hhhhhhccCCCcCCCCcccCCCCCceecChHHHHHHHHhcCceEEEeeeeeeeccceEeeCCeEEEEEcCCCC
Q psy248 167 -------SAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNY 239 (283)
Q Consensus 167 -------~~~~dllWsdP~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~~y 239 (283)
++++|+|||||.+..+|.+|+||.|++||++++++||++|++++||||||++++||++.++++|+||||||+|
T Consensus 178 ~~~~~~~~~~~dllWsDP~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~y 257 (285)
T cd07415 178 FQEVPHEGPMCDLLWSDPDDIEGWGISPRGAGYLFGQDVVEEFNHNNGLTLICRAHQLVMEGYQWMFDDKLVTVWSAPNY 257 (285)
T ss_pred CCCCCCCCCccceEecCCCccCCCCcCCCCCccccCHHHHHHHHHHCCCeEEEEcCccccceEEEecCCcEEEEecCCcc
Confidence 4567899999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCeEEEEEEeCCCceeeEEEecCC
Q psy248 240 CYRCGNIASILKFNSVDNRTPALFQAVP 267 (283)
Q Consensus 240 ~~~~~N~aavl~i~~~~~~~~~~~~~~~ 267 (283)
|+..+|+||+|.|+++++++|++|+|.|
T Consensus 258 ~~~~~n~~a~l~i~~~~~~~~~~~~~~~ 285 (285)
T cd07415 258 CYRCGNVASIMELDEHLKRSFKVFEAAP 285 (285)
T ss_pred cCCCCceEEEEEECCCCcEeEEEeccCC
Confidence 9999999999999999999999998764
No 7
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=3.9e-62 Score=455.93 Aligned_cols=229 Identities=28% Similarity=0.470 Sum_probs=205.0
Q ss_pred cccccccc-hhhhhcccccccccCC----CEEEEcCCCCCHHHHHHHHHhcCCCC-CCeEEEeCCccCCCCCcHHHHHHH
Q psy248 35 ETISYLTS-SELISTQYITTASCCN----PLYKESDVFFNFYDLEQLFRTGGQVP-DTNYIFMGDFVDRGYYSLETLTRL 108 (283)
Q Consensus 35 ~~i~~l~~-~~~~~~~~~~~~~~~~----~i~VvGDiHG~~~~L~~ll~~~~~~~-~~~~vfLGD~vDrG~~s~e~l~~l 108 (283)
++...+++ ++++.++ ..++.+.. |++||||||||+.+|.++|+..|+++ .++|||||||||||++|+||+.+|
T Consensus 24 ~i~~L~~~a~~il~~e-p~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g~~~~~~~~lFLGDyVDRG~~s~Evl~ll 102 (321)
T cd07420 24 YVLLILREARKVLKQL-PNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILIIL 102 (321)
T ss_pred HHHHHHHHHHHHHHhC-CCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcCCCCccceEEEeccccCCCCCcHHHHHHH
Confidence 44555544 4445444 45556554 99999999999999999999999885 467999999999999999999999
Q ss_pred HHhhhcCCCcEEEeCCCcccccchhccCchhHHHHhhCC--CcchhhHhhHhhccCcchh--------------------
Q psy248 109 LTLKARWPHRITLLRGNHESRQITQVYGFYDECQTKYGN--SNAWKYCCKVFDFLTIAAV-------------------- 166 (283)
Q Consensus 109 ~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~--~~~~~~~~~~f~~LPlaai-------------------- 166 (283)
++||+.+|+++++||||||.+.++..|||.+||..+|+. .++|..++++|++||+||+
T Consensus 103 ~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~~~~l~~~~~~~F~~LPlaaii~~~i~cvHGGi~~~~~l~~ 182 (321)
T cd07420 103 FAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLHGKKILRLLEDVFSWLPLATIIDNKILVVHGGISDSTDLDL 182 (321)
T ss_pred HHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCccHHHHHHHHHHHHHhCCceEEEcCCEEEEeCCCCCccCHHH
Confidence 999999999999999999999999999999999999984 5899999999999999999
Q ss_pred -----h-----------------------------------hhhhhccCCCcCCCC-cccCCCCCceecChHHHHHHHHh
Q psy248 167 -----S-----------------------------------AFCDLVWSDPAEVET-WTVSPRGAGWLFGAKVTHEFIHI 205 (283)
Q Consensus 167 -----~-----------------------------------~~~dllWsdP~~~~~-~~~~~rg~g~~fg~~~~~~fl~~ 205 (283)
. +++|+|||||.+..+ |.+++||.|++||++++++||++
T Consensus 183 i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLWSDP~~~~~~~~~~~RG~g~~FG~~~~~~Fl~~ 262 (321)
T cd07420 183 LDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDILWSDPKAQKGCKPNTFRGGGCYFGPDVTSKVLQK 262 (321)
T ss_pred HHhhhccccccccCCCccccccccccccccccccccccccchhheeeecCCccCCCCCccCCCCCccccCHHHHHHHHHH
Confidence 1 135789999997544 77789999999999999999999
Q ss_pred cCceEEEeeeeeeeccceEeeCCeEEEEEcCCCCCccCCCeEEEEEEeCCCceeeEEEe
Q psy248 206 NHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQ 264 (283)
Q Consensus 206 ~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~~y~~~~~N~aavl~i~~~~~~~~~~~~ 264 (283)
|++++||||||++++||++.++++|+|||||||||+..+|+||+|.|+++++++|.+|.
T Consensus 263 n~l~~IIR~He~v~~G~~~~~~~~~iTvFSa~nY~~~~~N~gavl~i~~~~~~~f~~~~ 321 (321)
T cd07420 263 HGLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGSNRGAYIKLGPDLTPHFVQYQ 321 (321)
T ss_pred CCCcEEEEcChhhhcceEEecCCeEEEEecCCccCCCCCccEEEEEECCCCceeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999998873
No 8
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=2.6e-61 Score=449.97 Aligned_cols=235 Identities=37% Similarity=0.714 Sum_probs=216.3
Q ss_pred ccccccccchhhhhcccccccccCCCEEEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhh
Q psy248 34 GETISYLTSSELISTQYITTASCCNPLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKA 113 (283)
Q Consensus 34 ~~~i~~l~~~~~~~~~~~~~~~~~~~i~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~ 113 (283)
.++...+.+...+...+..++.+.+|++|||||||++.+|.++|+..++++.++|||||||||||++|+|++.+++++|+
T Consensus 35 ~~i~~l~~~~~~il~~ep~ll~i~~~i~vvGDIHG~~~dL~~l~~~~g~~~~~~ylfLGDyVDRG~~s~evl~ll~~lki 114 (320)
T PTZ00480 35 AEVRGLCIKARDIFISQPILLELEAPLKICGDVHGQYFDLLRLFEYGGYPPESNYLFLGDYVDRGKQSLETICLLLAYKI 114 (320)
T ss_pred HHHHHHHHHHHHHHHhCCceEecCCCeEEEeecccCHHHHHHHHHhcCCCCcceEEEeceecCCCCCcHHHHHHHHHhcc
Confidence 44455554444444444566788999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEeCCCcccccchhccCchhHHHHhhCCCcchhhHhhHhhccCcchh---------------------------
Q psy248 114 RWPHRITLLRGNHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV--------------------------- 166 (283)
Q Consensus 114 ~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~f~~LPlaai--------------------------- 166 (283)
.+|+++++||||||.+.++..|||..||..+|+. .+|..++++|++||+||+
T Consensus 115 ~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~~-~l~~~~~~~F~~LPlaAiI~~~i~cvHGGI~p~~~~l~~i~~i~r 193 (320)
T PTZ00480 115 KYPENFFLLRGNHECASINRIYGFYDECKRRYTI-KLWKTFTDCFNCLPVAALIDEKILCMHGGLSPELSNLEQIRRIMR 193 (320)
T ss_pred cCCCceEEEecccchhhhhhhcchHHHHHhhcCH-HHHHHHHHHHHhccHhheecCcEEEEcCCcCcccCCHHHHhcccC
Confidence 9999999999999999999999999999999976 899999999999999997
Q ss_pred -------hhhhhhccCCCcC-CCCcccCCCCCceecChHHHHHHHHhcCceEEEeeeeeeeccceEeeCCeEEEEEcCCC
Q psy248 167 -------SAFCDLVWSDPAE-VETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPN 238 (283)
Q Consensus 167 -------~~~~dllWsdP~~-~~~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~~ 238 (283)
++++|+|||||.+ ..+|.+|+||.|++||++++++||++|++++||||||++++||++.++++|+||||||+
T Consensus 194 p~~~~~~~~~~dllWSDP~~~~~~~~~s~RG~g~~FG~~~~~~Fl~~n~l~~IiR~Hq~v~~G~~~~~~~~~iTvFSa~~ 273 (320)
T PTZ00480 194 PTDVPDTGLLCDLLWSDPDKDVQGWADNERGVSYVFSQEIVQVFLKKHELDLICRAHQVVEDGYEFFSKRQLVTLFSAPN 273 (320)
T ss_pred CCCCCccchhhheeecCcccccCCCccCCCCCccccCHHHHHHHHHhCCCcEEEEcCccccCceEEeCCCcEEEEeCCcc
Confidence 4578999999986 67999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCeEEEEEEeCCCceeeEEEecCCCC
Q psy248 239 YCYRCGNIASILKFNSVDNRTPALFQAVPNE 269 (283)
Q Consensus 239 y~~~~~N~aavl~i~~~~~~~~~~~~~~~~~ 269 (283)
||+.++|.||+|.|++++.++|++|+|.+.+
T Consensus 274 Y~~~~~N~ga~l~i~~~~~~~~~~~~p~~~~ 304 (320)
T PTZ00480 274 YCGEFDNAGSMMTIDESLMCSFQILKPAEQG 304 (320)
T ss_pred cCCCCCccEEEEEECCCCcEeEEEecCCccc
Confidence 9999999999999999999999999877655
No 9
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=1.4e-60 Score=441.52 Aligned_cols=229 Identities=34% Similarity=0.657 Sum_probs=210.9
Q ss_pred cccccccc-hhhhhcccccccccCCCEEEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhh
Q psy248 35 ETISYLTS-SELISTQYITTASCCNPLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKA 113 (283)
Q Consensus 35 ~~i~~l~~-~~~~~~~~~~~~~~~~~i~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~ 113 (283)
++.+.+.+ ++++.++ ..++++.+|++|+||||||+.+|.++|+..++++.++++|||||||||++|+|++.+++++|+
T Consensus 29 ~i~~l~~~~~~il~~e-~~ll~i~~p~~ViGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~ 107 (294)
T PTZ00244 29 DIRAVLTEVREIFMSQ-PMLLEIRPPVRVCGDTHGQYYDLLRIFEKCGFPPYSNYLFLGDYVDRGKHSVETITLQFCYKI 107 (294)
T ss_pred HHHHHHHHHHHHHHhC-CCeEeccCCceeeccCCCCHHHHHHHHHHcCCCCcccEEEeeeEecCCCCHHHHHHHHHHHhh
Confidence 33444433 3444444 566788999999999999999999999999999988999999999999999999999999999
Q ss_pred cCCCcEEEeCCCcccccchhccCchhHHHHhhCCCcchhhHhhHhhccCcchh---------------------------
Q psy248 114 RWPHRITLLRGNHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV--------------------------- 166 (283)
Q Consensus 114 ~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~f~~LPlaai--------------------------- 166 (283)
.+|.++++||||||.+.++..|||.+|+..+|+. .+|..+.++|+.||+||+
T Consensus 108 ~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~~-~l~~~~~~~f~~lPlaaii~~~il~vHgGi~p~~~~l~~i~~i~r 186 (294)
T PTZ00244 108 VYPENFFLLRGNHECASINKMYGFFDDVKRRYNI-KLFKAFTDVFNTMPVCCVISEKIICMHGGLSPDLTSLASVNEIER 186 (294)
T ss_pred ccCCeEEEEecccchHhHhhccChHHHHHHHhhH-HHHHHHHHHHHhCchheEecCeeEEEcCCCCchhhHHHHhhhhcc
Confidence 9999999999999999999999999999999986 899999999999999997
Q ss_pred -------hhhhhhccCCCcC-CCCcccCCCCCceecChHHHHHHHHhcCceEEEeeeeeeeccceEeeCCeEEEEEcCCC
Q psy248 167 -------SAFCDLVWSDPAE-VETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPN 238 (283)
Q Consensus 167 -------~~~~dllWsdP~~-~~~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~~ 238 (283)
++++|+|||||.+ ..+|.+|+||.|++||++++++||++|++++||||||++++||++.++++|+||||||+
T Consensus 187 p~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~Hq~~~~G~~~~~~~~~iTvfSa~~ 266 (294)
T PTZ00244 187 PCDVPDRGILCDLLWADPEDEVRGFLESDRGVSYLFGEDIVNDFLDMVDMDLIVRAHQVMERGYGFFASRQLVTVFSAPN 266 (294)
T ss_pred ccCCCccchhheeeecCcccccCCCCcCCCCCccccCHHHHHHHHHHcCCcEEEEcCccccCceEEcCCCeEEEEeCCcc
Confidence 4578999999986 67999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCeEEEEEEeCCCceeeEEEec
Q psy248 239 YCYRCGNIASILKFNSVDNRTPALFQA 265 (283)
Q Consensus 239 y~~~~~N~aavl~i~~~~~~~~~~~~~ 265 (283)
||+..+|+||+|.|+++..++|+.|++
T Consensus 267 Y~~~~~N~~a~l~i~~~~~~~f~~~~~ 293 (294)
T PTZ00244 267 YCGEFDNDAAVMNIDDKLQCSFLIIPA 293 (294)
T ss_pred ccCCCCceEEEEEECCCCcEeEEEeec
Confidence 999999999999999999999998854
No 10
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=2.4e-60 Score=440.14 Aligned_cols=231 Identities=39% Similarity=0.736 Sum_probs=212.8
Q ss_pred ccccccccchhhhhcccccccccCCCEEEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhh
Q psy248 34 GETISYLTSSELISTQYITTASCCNPLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKA 113 (283)
Q Consensus 34 ~~~i~~l~~~~~~~~~~~~~~~~~~~i~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~ 113 (283)
.++...+.+...+..++..++.++.|++||||||||+.+|.++|+..++++.++|||||||||||++|+|++.+++++|+
T Consensus 26 ~~i~~l~~~~~~il~~ep~~l~i~~~i~viGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~e~i~ll~~lk~ 105 (293)
T cd07414 26 AEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKI 105 (293)
T ss_pred HHHHHHHHHHHHHHHhCCCeEecCCceEEEEecCCCHHHHHHHHHhcCCCCcceEEEEeeEecCCCCcHHHHHHHHHhhh
Confidence 34445554444444444567788999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEeCCCcccccchhccCchhHHHHhhCCCcchhhHhhHhhccCcchh---------------------------
Q psy248 114 RWPHRITLLRGNHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV--------------------------- 166 (283)
Q Consensus 114 ~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~f~~LPlaai--------------------------- 166 (283)
.+|+++++||||||.+.++..|||.+|+..+|+. .+|..+.++|++||+||+
T Consensus 106 ~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~~-~l~~~~~~~f~~lPlaa~i~~~i~cvHgGi~p~~~~l~~i~~i~r 184 (293)
T cd07414 106 KYPENFFLLRGNHECASINRIYGFYDECKRRYNI-KLWKTFTDCFNCLPVAAIIDEKIFCMHGGLSPDLQSMEQIRRIMR 184 (293)
T ss_pred hCCCcEEEEecccchhhHhhhcchhhHHHHhhhH-HHHHHHHHHHHHhHHHHhhCCcEEEEccCCCcccCcHHHHhcccC
Confidence 9999999999999999999999999999999986 899999999999999996
Q ss_pred -------hhhhhhccCCCcC-CCCcccCCCCCceecChHHHHHHHHhcCceEEEeeeeeeeccceEeeCCeEEEEEcCCC
Q psy248 167 -------SAFCDLVWSDPAE-VETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPN 238 (283)
Q Consensus 167 -------~~~~dllWsdP~~-~~~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~~ 238 (283)
++++|+|||||.. ..+|.+|+||.|+.||++++++||++||+++||||||++++||++.++++|+||||||+
T Consensus 185 ~~~~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~iTvfSa~~ 264 (293)
T cd07414 185 PTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGKDVVAKFLNKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPN 264 (293)
T ss_pred CCCCCchhhHhhhhccCcccccCCCccCCCCcceecCHHHHHHHHHHcCCeEEEECCccccCeEEEeCCCcEEEEecCCc
Confidence 4578999999986 67899999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCeEEEEEEeCCCceeeEEEec
Q psy248 239 YCYRCGNIASILKFNSVDNRTPALFQA 265 (283)
Q Consensus 239 y~~~~~N~aavl~i~~~~~~~~~~~~~ 265 (283)
||+..+|+||+|.|+++++++|+.|+|
T Consensus 265 Y~~~~~N~~a~l~i~~~~~~~~~~~~~ 291 (293)
T cd07414 265 YCGEFDNAGAMMSVDETLMCSFQILKP 291 (293)
T ss_pred ccCCCCceEEEEEECCCCcEEEEEecC
Confidence 999999999999999999999999975
No 11
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=1.7e-60 Score=444.93 Aligned_cols=233 Identities=34% Similarity=0.643 Sum_probs=210.7
Q ss_pred cccccccch-hhhhcccccccccCCC----EEEEcCCCCCHHHHHHHHHhcCCCCC-CeEEEeCCccCCCCCcHHHHHHH
Q psy248 35 ETISYLTSS-ELISTQYITTASCCNP----LYKESDVFFNFYDLEQLFRTGGQVPD-TNYIFMGDFVDRGYYSLETLTRL 108 (283)
Q Consensus 35 ~~i~~l~~~-~~~~~~~~~~~~~~~~----i~VvGDiHG~~~~L~~ll~~~~~~~~-~~~vfLGD~vDrG~~s~e~l~~l 108 (283)
++...+.+. +++.++ ..++++..| ++||||||||+.+|.++|+..++++. ++|||||||||||++|+||+.+|
T Consensus 33 ~~~~l~~~~~~il~~e-p~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll 111 (316)
T cd07417 33 YAYQILLQVKELLKKL-PSLVEITIPEGEKITVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSFSVEVILTL 111 (316)
T ss_pred HHHHHHHHHHHHHHhC-CcceeccCCCCceeEEeecccCCHHHHHHHHHhcCCCCccCeEEEEeeEecCCCChHHHHHHH
Confidence 344444433 444444 455555544 99999999999999999999998765 46999999999999999999999
Q ss_pred HHhhhcCCCcEEEeCCCcccccchhccCchhHHHHhhCCCcchhhHhhHhhccCcchh----------------------
Q psy248 109 LTLKARWPHRITLLRGNHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV---------------------- 166 (283)
Q Consensus 109 ~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~f~~LPlaai---------------------- 166 (283)
+++|+.+|+++++||||||.+.++..|||..|+..+|+. .+|..+.++|++||++++
T Consensus 112 ~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~~-~l~~~~~~~f~~LPlaaii~~~~~~vHgGi~~~~~~~l~~ 190 (316)
T cd07417 112 FAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYNE-QMFDLFSEVFNWLPLAHLINGKVLVVHGGLFSDDGVTLDD 190 (316)
T ss_pred HHhhhccCCceEEEeeccchHHHHHHhhhcchhhhcccH-HHHHHHHHHHHhchHhheeCCeEEEEccccccCCCccHHH
Confidence 999999999999999999999999999999999999986 899999999999999997
Q ss_pred -------------hhhhhhccCCCcCCCCcccCCCCCceecChHHHHHHHHhcCceEEEeeeeeeeccceEeeCCeEEEE
Q psy248 167 -------------SAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTI 233 (283)
Q Consensus 167 -------------~~~~dllWsdP~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~~~~iTi 233 (283)
++++|+|||||.+..+|.+|+||.|+.||++++++||++|++++||||||++++||++.++++|+||
T Consensus 191 i~~i~r~~~~~~~~~~~dllWsDP~~~~~~~~s~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~Tv 270 (316)
T cd07417 191 IRKIDRFRQPPDSGLMCELLWSDPQPQPGRSPSKRGVGCQFGPDVTKRFLEENNLEYIIRSHEVKDEGYEVEHDGKCITV 270 (316)
T ss_pred hhcccCCCCCCccccceeeeecCCCCCCCCCccCCCCceEeCHHHHHHHHHHcCCcEEEECCcccceeEEEecCCeEEEE
Confidence 3467999999998889999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCccCCCeEEEEEEeC-CCceeeEEEecCCCC
Q psy248 234 WSAPNYCYRCGNIASILKFNS-VDNRTPALFQAVPNE 269 (283)
Q Consensus 234 fSa~~y~~~~~N~aavl~i~~-~~~~~~~~~~~~~~~ 269 (283)
|||||||+.++|+||+|.|++ +++++|++|+++|+.
T Consensus 271 fSa~~Y~~~~~N~ga~~~i~~~~~~~~~~~~~~~~~~ 307 (316)
T cd07417 271 FSAPNYCDQMGNKGAFIRITGSDLKPKFTQFEAVPHP 307 (316)
T ss_pred eCCccccCCCCcceEEEEEeCCCceeeeEeccCCCCC
Confidence 999999999999999999998 899999999988765
No 12
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=2e-59 Score=436.30 Aligned_cols=234 Identities=35% Similarity=0.652 Sum_probs=210.3
Q ss_pred ccccccccchhhhhcccccccccCCCEEEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhh
Q psy248 34 GETISYLTSSELISTQYITTASCCNPLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKA 113 (283)
Q Consensus 34 ~~~i~~l~~~~~~~~~~~~~~~~~~~i~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~ 113 (283)
.++...+.+...+.+++..++.++.|++||||||||+.+|.++|+..+.++.++|||||||||||++|+|++.+|+++|+
T Consensus 19 ~~i~~l~~~~~~il~~e~~l~~i~~~i~ViGDIHG~~~dL~~l~~~~g~~~~~~ylFLGDyVDRG~~s~Evi~lL~~lki 98 (305)
T cd07416 19 EDALRIITEGAEILRQEPNLLRIEAPVTVCGDIHGQFYDLLKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKI 98 (305)
T ss_pred HHHHHHHHHHHHHHHhCCCeEccCCCEEEEEeCCCCHHHHHHHHHhcCCCCCceEEEECCccCCCCChHHHHHHHHHHHh
Confidence 34455554444444444567788999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEeCCCcccccchhccCchhHHHHhhCCCcchhhHhhHhhccCcchh---------------------------
Q psy248 114 RWPHRITLLRGNHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV--------------------------- 166 (283)
Q Consensus 114 ~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~f~~LPlaai--------------------------- 166 (283)
.+|+++++||||||.+.++..|||..|+..+|+. ++|..+.++|+.||++|+
T Consensus 99 ~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y~~-~l~~~~~~~f~~LPlaaii~~~i~~vHGGi~p~~~~l~~i~~i~r 177 (305)
T cd07416 99 LYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSE-RVYDACMEAFDCLPLAALMNQQFLCVHGGLSPELKTLDDIRKLDR 177 (305)
T ss_pred hcCCCEEEEeCCCcHHHHHHhhCchhHHHHhccH-HHHHHHHHHHhhccceeEEcCCEEEEcCCCCcccccHHHhcccCC
Confidence 9999999999999999999999999999999976 899999999999999996
Q ss_pred -------hhhhhhccCCCcCCC-------CcccC-CCCCceecChHHHHHHHHhcCceEEEeeeeeeeccceEeeCC---
Q psy248 167 -------SAFCDLVWSDPAEVE-------TWTVS-PRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDG--- 228 (283)
Q Consensus 167 -------~~~~dllWsdP~~~~-------~~~~~-~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~~--- 228 (283)
++++|+|||||.+.. +|.++ +||.|++||++++++||++|++++||||||++++||++.+++
T Consensus 178 ~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g~~fG~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~ 257 (305)
T cd07416 178 FREPPAFGPMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCSYFYSYRAVCEFLQKNNLLSIIRAHEAQDAGYRMYRKSQTT 257 (305)
T ss_pred CCCCCCCCcceeeeecCcccccccccccccccccCCCCCceecCHHHHHHHHHHcCCeEEEEeccccccceEEecCCCcC
Confidence 457899999998522 47664 899999999999999999999999999999999999998876
Q ss_pred ---eEEEEEcCCCCCccCCCeEEEEEEeCCCceeeEEEecCCCC
Q psy248 229 ---NLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQAVPNE 269 (283)
Q Consensus 229 ---~~iTifSa~~y~~~~~N~aavl~i~~~~~~~~~~~~~~~~~ 269 (283)
+|+||||||+||+.++|+||+|.|+++ .++|++|+++|+.
T Consensus 258 ~~~~~iTvFSa~~Y~~~~~N~~a~l~i~~~-~~~~~~~~~~~~~ 300 (305)
T cd07416 258 GFPSLITIFSAPNYLDVYNNKAAVLKYENN-VMNIRQFNCSPHP 300 (305)
T ss_pred CCCcEEEEeCCccccCCCCceEEEEEEcCC-cceEEEecCCCCC
Confidence 899999999999999999999999776 5899999999965
No 13
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=3e-59 Score=428.83 Aligned_cols=229 Identities=43% Similarity=0.762 Sum_probs=210.6
Q ss_pred cccccchhhhhcccccccccCCCEEEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCC
Q psy248 37 ISYLTSSELISTQYITTASCCNPLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWP 116 (283)
Q Consensus 37 i~~l~~~~~~~~~~~~~~~~~~~i~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P 116 (283)
...+.+...+..++..++.+++|++||||||||+.+|.++|+..+.++.+++||||||||||++|+|++.+++++|+.+|
T Consensus 7 ~~l~~~~~~il~~e~~~~~i~~~i~vvGDiHG~~~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~s~e~l~~l~~lk~~~p 86 (271)
T smart00156 7 LELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDLNGPPPDTNYVFLGDYVDRGPFSIEVILLLFALKILYP 86 (271)
T ss_pred HHHHHHHHHHHHhCCCeEEeCCCEEEEEeCcCCHHHHHHHHHHcCCCCCceEEEeCCccCCCCChHHHHHHHHHHHhcCC
Confidence 33444333334444566688999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeCCCcccccchhccCchhHHHHhhCCCcchhhHhhHhhccCcchh------------------------------
Q psy248 117 HRITLLRGNHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV------------------------------ 166 (283)
Q Consensus 117 ~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~f~~LPlaai------------------------------ 166 (283)
.++++||||||.+.++..|||.+|+..+|+. ++|..+.++|++||+||+
T Consensus 87 ~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~-~l~~~~~~~f~~LPl~aii~~~~~~vHgGi~~~~~~l~~i~~i~r~~~ 165 (271)
T smart00156 87 NRVVLLRGNHESRSMNEIYGFYDECKRKYGE-EIYEKFQEAFSWLPLAALIDNKILCMHGGLSPDLTTLDDIRKLKRPQE 165 (271)
T ss_pred CCEEEEeccccHHHHHHhccchhhhhhhcCH-HHHHHHHHHHhhChhheEEcCeEEEEecCCCCccCCHHHHhcccCCCC
Confidence 9999999999999999999999999999986 999999999999999997
Q ss_pred ----hhhhhhccCCCc-CCCCcccCCCCCceecChHHHHHHHHhcCceEEEeeeeeeeccceEeeCCeEEEEEcCCCCCc
Q psy248 167 ----SAFCDLVWSDPA-EVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCY 241 (283)
Q Consensus 167 ----~~~~dllWsdP~-~~~~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~~y~~ 241 (283)
++++|+|||||. ...+|.+|+||.|+.||++++++||++|++++||||||++++||++.++++|+||||||+||+
T Consensus 166 ~~~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~y~~ 245 (271)
T smart00156 166 PPDEGLLIDLLWSDPDQPVDGFQPSIRGASYYFGPDAVDEFLKKNNLKLIIRAHQVVDDGYEFFHDRKLVTIFSAPNYCG 245 (271)
T ss_pred CCchhhhhheeecCCCcccCCCccCCCCCccccCHHHHHHHHHHCCCeEEEecCcccCCcEEEecCCcEEEEECCccccc
Confidence 467899999996 478999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEEeCCCceeeEEEecC
Q psy248 242 RCGNIASILKFNSVDNRTPALFQAV 266 (283)
Q Consensus 242 ~~~N~aavl~i~~~~~~~~~~~~~~ 266 (283)
.++|+||+|.|++++++++.+|++.
T Consensus 246 ~~~n~~a~~~i~~~~~~~~~~~~~~ 270 (271)
T smart00156 246 RFGNKAAVLKVDKDLKLSFEQFKPG 270 (271)
T ss_pred CCCceEEEEEECCCCcEEEEEecCC
Confidence 8899999999999999999999753
No 14
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=9.6e-57 Score=419.48 Aligned_cols=232 Identities=36% Similarity=0.658 Sum_probs=207.1
Q ss_pred ccccccccchhhhhcccccccccCCCEEEEcCCCCCHHHHHHHHHhcCCCCC--------CeEEEeCCccCCCCCcHHHH
Q psy248 34 GETISYLTSSELISTQYITTASCCNPLYKESDVFFNFYDLEQLFRTGGQVPD--------TNYIFMGDFVDRGYYSLETL 105 (283)
Q Consensus 34 ~~~i~~l~~~~~~~~~~~~~~~~~~~i~VvGDiHG~~~~L~~ll~~~~~~~~--------~~~vfLGD~vDrG~~s~e~l 105 (283)
.++...+.+...+.+++..++++.+|++||||||||+.+|.++|+..++++. .+|||||||||||++|+||+
T Consensus 24 ~~i~~l~~~~~~il~~e~~~~~i~~~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRGp~s~evl 103 (311)
T cd07419 24 NEILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETI 103 (311)
T ss_pred HHHHHHHHHHHHHHHhCCCeEeeCCCEEEEEeccCCHHHHHHHHHHcCCCcccccCCCcCceEEEECCccCCCCChHHHH
Confidence 3444445444444444456778899999999999999999999999988754 57999999999999999999
Q ss_pred HHHHHhhhcCCCcEEEeCCCcccccchhccCchhHHHHhhCC-----CcchhhHhhHhhccCcchh--------------
Q psy248 106 TRLLTLKARWPHRITLLRGNHESRQITQVYGFYDECQTKYGN-----SNAWKYCCKVFDFLTIAAV-------------- 166 (283)
Q Consensus 106 ~~l~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~-----~~~~~~~~~~f~~LPlaai-------------- 166 (283)
.+|+++|+.+|+++++||||||.+.++..+||..+|..+|+. ..+|..++++|++||++++
T Consensus 104 ~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~f~~LPl~avi~~~~l~vHgGi~p 183 (311)
T cd07419 104 CLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRLFEWLPLAAIIEDKILCMHGGIGR 183 (311)
T ss_pred HHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHHHHhCchhheecccEEEEccCCCC
Confidence 999999999999999999999999999999999999999986 3699999999999999986
Q ss_pred ---------------------hhhhhhccCCCcCC---CCcccCC---CCCc--eecChHHHHHHHHhcCceEEEeeeee
Q psy248 167 ---------------------SAFCDLVWSDPAEV---ETWTVSP---RGAG--WLFGAKVTHEFIHINHLKLICRAHQL 217 (283)
Q Consensus 167 ---------------------~~~~dllWsdP~~~---~~~~~~~---rg~g--~~fg~~~~~~fl~~~~l~~iIRgHq~ 217 (283)
++++|++||||.+. .+|.+++ ||.| +.||++++++||++|++++||||||+
T Consensus 184 ~~~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~rg~g~~~~fg~~~~~~Fl~~n~l~~iiRgHe~ 263 (311)
T cd07419 184 SINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKFGPDRVHRFLEENDLQMIIRAHEC 263 (311)
T ss_pred CCCcHHHHhhcCCCCCCCCCCcceeeeeccCccccccccccccCCCCCCCCCcceeECHHHHHHHHHHCCCeEEEEechh
Confidence 34578999999963 4677766 9998 79999999999999999999999999
Q ss_pred eeccceEeeCCeEEEEEcCCCCCccCCCeEEEEEEeCCCceeeEEEec
Q psy248 218 VHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQA 265 (283)
Q Consensus 218 v~~G~~~~~~~~~iTifSa~~y~~~~~N~aavl~i~~~~~~~~~~~~~ 265 (283)
+++||++.++++|+||||||+||+.++|.||++.|+++..+++++++|
T Consensus 264 ~~~G~~~~~~~~~iTvfSa~~y~~~~~n~~ai~~i~~~~~~~~~~~~~ 311 (311)
T cd07419 264 VMDGFERFAQGKLITLFSATNYCGTAGNAGAILVLGRDLTIIPKLIHP 311 (311)
T ss_pred hhCCeEEeCCCeEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeCC
Confidence 999999999999999999999999999999999999999999999875
No 15
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=100.00 E-value=9.3e-57 Score=426.20 Aligned_cols=232 Identities=34% Similarity=0.545 Sum_probs=204.3
Q ss_pred cccccccchhhhhcccccccccC----CCEEEEcCCCCCHHHHHHHHHhcCCCCC-CeEEEeCCccCCCCCcHHHHHHHH
Q psy248 35 ETISYLTSSELISTQYITTASCC----NPLYKESDVFFNFYDLEQLFRTGGQVPD-TNYIFMGDFVDRGYYSLETLTRLL 109 (283)
Q Consensus 35 ~~i~~l~~~~~~~~~~~~~~~~~----~~i~VvGDiHG~~~~L~~ll~~~~~~~~-~~~vfLGD~vDrG~~s~e~l~~l~ 109 (283)
++.+.+.+...+...+.+++.++ .|++|||||||++.+|.++|+..++++. ++|||||||||||++|+||+.+|+
T Consensus 39 ~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~ 118 (377)
T cd07418 39 VFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWGLETFLLLL 118 (377)
T ss_pred HHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHHHhCCCCCCceEEEeccccCCCCChHHHHHHHH
Confidence 33444444444444445666666 8999999999999999999999998865 459999999999999999999999
Q ss_pred HhhhcCCCcEEEeCCCcccccchhccCchhHHHHhhCC--CcchhhHhhHhhccCcchh----------hh---------
Q psy248 110 TLKARWPHRITLLRGNHESRQITQVYGFYDECQTKYGN--SNAWKYCCKVFDFLTIAAV----------SA--------- 168 (283)
Q Consensus 110 ~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~--~~~~~~~~~~f~~LPlaai----------~~--------- 168 (283)
++|+.+|++|++||||||.+.++..|||.+|+..+|+. ..+|+.+.++|++||+||+ ++
T Consensus 119 ~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~~~~l~~~~~~~f~~LPlaavI~~~i~cvHGGI~~~~~l~~~ 198 (377)
T cd07418 119 SWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDKGKHVYRKCLGCFEGLPLASIIAGRVYTAHGGLFRSPSLPKR 198 (377)
T ss_pred HHhhccCCeEEEEeeecccccchhhcccchhhhhhcCchHHHHHHHHHHHHHhCCcEEEECCCEEEECCCcCCccccccc
Confidence 99999999999999999999999999999999999986 3799999999999999997 22
Q ss_pred ----------------------------------------------hhhhccCCCcCCCCcccC-CCCCceecChHHHHH
Q psy248 169 ----------------------------------------------FCDLVWSDPAEVETWTVS-PRGAGWLFGAKVTHE 201 (283)
Q Consensus 169 ----------------------------------------------~~dllWsdP~~~~~~~~~-~rg~g~~fg~~~~~~ 201 (283)
++|+|||||....+|.++ +||.|++||++++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~~~i~~dlLWSDP~~~~g~~~~~~RG~g~~FG~~~~~~ 278 (377)
T cd07418 199 KKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGSNLIPGDVLWSDPSLTPGLSPNKQRGIGLLWGPDCTEE 278 (377)
T ss_pred ccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCccccceeeEeeCCccCCCCCccCCCCCccccCHHHHHH
Confidence 358999999987787765 799999999999999
Q ss_pred HHHhcCceEEEeeeee------------eeccceEeeC---CeEEEEEcCCCCC------ccCCCeEEEEEEeCCC--ce
Q psy248 202 FIHINHLKLICRAHQL------------VHEGYKYMFD---GNLVTIWSAPNYC------YRCGNIASILKFNSVD--NR 258 (283)
Q Consensus 202 fl~~~~l~~iIRgHq~------------v~~G~~~~~~---~~~iTifSa~~y~------~~~~N~aavl~i~~~~--~~ 258 (283)
||++|++++||||||+ +++||++.++ ++|+||||||||| +.++|+||++.++++. ..
T Consensus 279 FL~~n~l~~IIRsHe~~~~~~~~~~~~~v~~Gy~~~~~~~~~~liTvFSa~nY~~~~~~~~~~~N~ga~~~~~~~~~~~~ 358 (377)
T cd07418 279 FLEKNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDHDVESGKLITLFSAPDYPQFQATEERYNNKGAYIILQPPDFSDP 358 (377)
T ss_pred HHHHcCCcEEEECCCCcccccccccchhhhCceEEeccCCCCcEEEEecCCccccccccccccCcceEEEEEecCCCCCc
Confidence 9999999999999996 6799999887 8999999999999 6789999999996644 79
Q ss_pred eeEEEecC
Q psy248 259 TPALFQAV 266 (283)
Q Consensus 259 ~~~~~~~~ 266 (283)
+|.+|+++
T Consensus 359 ~~~~~~~~ 366 (377)
T cd07418 359 QFHTFEAV 366 (377)
T ss_pred cceEeecc
Confidence 99999887
No 16
>KOG0375|consensus
Probab=100.00 E-value=2e-57 Score=418.57 Aligned_cols=231 Identities=36% Similarity=0.672 Sum_probs=212.8
Q ss_pred cccccchhhhhcccccccccCCCEEEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCC
Q psy248 37 ISYLTSSELISTQYITTASCCNPLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWP 116 (283)
Q Consensus 37 i~~l~~~~~~~~~~~~~~~~~~~i~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P 116 (283)
+..+++...+..++.+++++.+||+||||||||+.||+++|+..|-|..++|+|||||||||.+|+||+..|.+||+.||
T Consensus 67 lrIi~~~a~llr~Eknmi~v~APiTVCGDIHGQf~DLmKLFEVGG~PA~t~YLFLGDYVDRGyFSiECvlYLwsLKi~yp 146 (517)
T KOG0375|consen 67 LRIINEGAALLRQEKNMIEVEAPITVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWSLKINYP 146 (517)
T ss_pred HHHHHHHHHHHhcCCceEeccCCeeEecccchHHHHHHHHHHccCCcccceeEeeccccccceeeeehHHHHHHHhcCCC
Confidence 44555666666677788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeCCCcccccchhccCchhHHHHhhCCCcchhhHhhHhhccCcchh------------------------------
Q psy248 117 HRITLLRGNHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV------------------------------ 166 (283)
Q Consensus 117 ~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~f~~LPlaai------------------------------ 166 (283)
+.+++||||||++.++..+.|..||.-||.. ++|+++.+.|++|||||+
T Consensus 147 ~tl~lLRGNHECrHLT~YFTFKqEc~iKYse-~vYdaCmesFd~LPLAAlmNqQflCVHGGlSPEi~tl~DIr~l~RF~E 225 (517)
T KOG0375|consen 147 KTLFLLRGNHECRHLTEYFTFKQECKIKYSE-RVYDACMESFDCLPLAALMNQQFLCVHGGLSPEIHTLDDIRKLDRFKE 225 (517)
T ss_pred CeEEEecCCcchhhhHhHhhHHHHHhHhccH-HHHHHHHHHhccchHHHHhcCceEEecCCCCcccccHHHHHhhhhccC
Confidence 9999999999999999999999999999976 999999999999999999
Q ss_pred ----hhhhhhccCCCcC-------CCCcc-cCCCCCceecChHHHHHHHHhcCceEEEeeeeeeeccceEeeC------C
Q psy248 167 ----SAFCDLVWSDPAE-------VETWT-VSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFD------G 228 (283)
Q Consensus 167 ----~~~~dllWsdP~~-------~~~~~-~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~------~ 228 (283)
+++||+|||||.+ .+.|. ++.||++|.|...++++||+.||+--|||+||.++.||+.... .
T Consensus 226 pPa~GpmCDLLWsDPlEdfgnek~~e~f~hNsvRGCSyfysy~A~C~FLq~nnLLSIiRAHEAQDaGYRMYrksqttGFP 305 (517)
T KOG0375|consen 226 PPAFGPMCDLLWSDPLEDFGNEKTSEHFTHNSVRGCSYFYSYPAVCEFLQNNNLLSIIRAHEAQDAGYRMYRKSQTTGFP 305 (517)
T ss_pred CCccCcchhhhccChhhhccccccccccccCccccccceechHHHHHHHHhCCchhhhhhhhhhhhhhhhhhcccccCCc
Confidence 8999999999985 22343 4589999999999999999999999999999999999986544 3
Q ss_pred eEEEEEcCCCCCccCCCeEEEEEEeCCCceeeEEEecCCCC
Q psy248 229 NLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQAVPNE 269 (283)
Q Consensus 229 ~~iTifSa~~y~~~~~N~aavl~i~~~~~~~~~~~~~~~~~ 269 (283)
.+|||||||||.+.++|+||||.. +++.+++.||.++|+.
T Consensus 306 SLiTiFSAPNYLDvYnNKAAvLKY-EnNVMNIRQFncSPHP 345 (517)
T KOG0375|consen 306 SLITIFSAPNYLDVYNNKAAVLKY-ENNVMNIRQFNCSPHP 345 (517)
T ss_pred hheeeecCCchhhhhccHHHHhhh-hcccceeeccCCCCCC
Confidence 699999999999999999999998 8999999999999964
No 17
>KOG0377|consensus
Probab=100.00 E-value=6.1e-48 Score=362.92 Aligned_cols=212 Identities=31% Similarity=0.543 Sum_probs=198.0
Q ss_pred ccCCCEEEEcCCCCCHHHHHHHHHhcCCCCCCe-EEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccchh
Q psy248 55 SCCNPLYKESDVFFNFYDLEQLFRTGGQVPDTN-YIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQITQ 133 (283)
Q Consensus 55 ~~~~~i~VvGDiHG~~~~L~~ll~~~~~~~~~~-~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~~ 133 (283)
.++..|+||||+||.++||.-+|.+.|+|..++ |||.||+||||.+|+|+|++|+++-+.||..+++-|||||+..+|.
T Consensus 162 s~S~qVTiCGDLHGklDDL~~I~yKNGlPS~~npYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNl 241 (631)
T KOG0377|consen 162 SVSQQVTICGDLHGKLDDLLVILYKNGLPSSSNPYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNL 241 (631)
T ss_pred ccccceEEeccccccccceEEEEecCCCCCCCCCeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHH
Confidence 456789999999999999999999999987665 9999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHhhCC--CcchhhHhhHhhccCcchh---------------------------------------------
Q psy248 134 VYGFYDECQTKYGN--SNAWKYCCKVFDFLTIAAV--------------------------------------------- 166 (283)
Q Consensus 134 ~~gf~~e~~~~~g~--~~~~~~~~~~f~~LPlaai--------------------------------------------- 166 (283)
.|||..|+..||.. .++...+.++|++||++.+
T Consensus 242 RYGF~kEv~~KYk~~~k~Ilr~leevy~WLPi~tiid~~ilvvHGGiSd~Tdl~ll~kIeR~k~~Svlrpp~ek~~d~e~ 321 (631)
T KOG0377|consen 242 RYGFIKEVESKYKRHGKRILRFLEEVYRWLPIGTIIDSRILVVHGGISDSTDLDLLDKIERGKYVSVLRPPTEKGRDGEK 321 (631)
T ss_pred HHhHHHHHHHHhhhcccHHHHHHHHHHHhcchhhhcccceEEEecCcccchhHHHHhhhhccceeEEecCCcccCccCCc
Confidence 99999999999975 5888999999999999998
Q ss_pred ----------hhhhhhccCCCcCCCCcccC-CCCCceecChHHHHHHHHhcCceEEEeeeeeeeccceEeeCCeEEEEEc
Q psy248 167 ----------SAFCDLVWSDPAEVETWTVS-PRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWS 235 (283)
Q Consensus 167 ----------~~~~dllWsdP~~~~~~~~~-~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~~~~iTifS 235 (283)
..+.|++||||....|+-|| -||.|++||++++..||++.+++++||+|||.++||++.++++|+||||
T Consensus 322 ~s~~vg~dEW~Qi~DImWSDP~~~~GC~pNt~RGgG~yFGpDvT~~~Lqk~~l~~liRSHECKpeGyEf~Hd~kvlTiFS 401 (631)
T KOG0377|consen 322 LSKAVGVDEWQQIFDIMWSDPQATMGCVPNTLRGGGCYFGPDVTDNFLQKHRLSYLIRSHECKPEGYEFCHDNKVLTIFS 401 (631)
T ss_pred hhhhcChHHHHHHHHHHhcCcccccCCCcccccCCcceeCchHHHHHHHHhCceeeeeecccCCCcceeeeCCeEEEEEe
Confidence 44568999999998887666 6999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCeEEEEEEeCCCceeeEEEecC
Q psy248 236 APNYCYRCGNIASILKFNSVDNRTPALFQAV 266 (283)
Q Consensus 236 a~~y~~~~~N~aavl~i~~~~~~~~~~~~~~ 266 (283)
|+||-....|+||++.+.......|.||.++
T Consensus 402 ASNYYe~GSNrGAYikl~~~~~PhfvQY~a~ 432 (631)
T KOG0377|consen 402 ASNYYEIGSNRGAYIKLGNQLTPHFVQYQAA 432 (631)
T ss_pred ccchheecCCCceEEEeCCCCCchHHHHHhh
Confidence 9999888889999999988888888888744
No 18
>KOG0376|consensus
Probab=100.00 E-value=2.3e-44 Score=343.99 Aligned_cols=216 Identities=36% Similarity=0.669 Sum_probs=205.7
Q ss_pred ccCCCEEEEcCCCCCHHHHHHHHHhcCCCCCC-eEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccchh
Q psy248 55 SCCNPLYKESDVFFNFYDLEQLFRTGGQVPDT-NYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQITQ 133 (283)
Q Consensus 55 ~~~~~i~VvGDiHG~~~~L~~ll~~~~~~~~~-~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~~ 133 (283)
+-...+.|+||+||++.+++++++..|.|+.. .++|.||+||||..|.|++..+++.|+.+|++++++|||||+..+++
T Consensus 211 ~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~ 290 (476)
T KOG0376|consen 211 PGDVKISVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNK 290 (476)
T ss_pred CCCceEEecCCccccccchhhhHhhcCCCCCcccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHH
Confidence 44568999999999999999999999998765 49999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHhhCCCcchhhHhhHhhccCcchh-----------------------------------hhhhhhccCCCc
Q psy248 134 VYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV-----------------------------------SAFCDLVWSDPA 178 (283)
Q Consensus 134 ~~gf~~e~~~~~g~~~~~~~~~~~f~~LPlaai-----------------------------------~~~~dllWsdP~ 178 (283)
.|||..+++.+|+. +.+..+.++|.+||++.. +.+|++|||||.
T Consensus 291 iy~f~~e~~~kyte-~~~~~f~~~f~~LPl~~~i~~~~~~~hgglf~~~~v~l~d~r~i~r~~~~~~~~~~~~~lws~pq 369 (476)
T KOG0376|consen 291 IYGFEGEVKAKYTE-EMFNLFSEVFIWLPLAHLINNKVLVMHGGLFSPDGVTLEDFRNIDRFEQPPEEGLMCELLWSDPQ 369 (476)
T ss_pred HhCCCcchhhhhHH-HHHHhhhhhhccccchhhhcCceEEEecCcCCCCCccHHHHHhhhhccCCcccccccccccCCCc
Confidence 99999999999987 888888899999999998 778999999999
Q ss_pred CCCCcccCCCCCceecChHHHHHHHHhcCceEEEeeeeeeeccceEeeCCeEEEEEcCCCCCccCCCeEEEEEEe-CCCc
Q psy248 179 EVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFN-SVDN 257 (283)
Q Consensus 179 ~~~~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~~y~~~~~N~aavl~i~-~~~~ 257 (283)
...+..+|.||.|..||.+++++||+.|+++.|||||++.+.||+..++|+|+|||||||||+..+|.||++.++ ++++
T Consensus 370 ~~~g~s~S~r~~g~~fG~d~t~~f~~~n~l~~i~rshe~~d~gy~~eh~g~l~tvfsapnycd~~~n~ga~i~~~~~~~~ 449 (476)
T KOG0376|consen 370 PANGRSPSKRGVGLQFGPDVTERFLQDNNLDKIIRSHEVKDEGYEVEHSGKLITVFSAPNYCDQMGNKGAFIHLEPDDLT 449 (476)
T ss_pred cccCCCccccCceeeeCCCchhhHHhhcchHHHhhccccCCCceeeecCCcEEEEecCcchhhhcCCcceEEEecCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 7889
Q ss_pred eeeEEEecCCCCCC
Q psy248 258 RTPALFQAVPNEER 271 (283)
Q Consensus 258 ~~~~~~~~~~~~~~ 271 (283)
..+++|+++|+..-
T Consensus 450 p~~~~~e~vp~~~~ 463 (476)
T KOG0376|consen 450 PNFYTFEAVPHPDV 463 (476)
T ss_pred cceeecccCCCCCC
Confidence 99999999997643
No 19
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.97 E-value=6.2e-30 Score=226.09 Aligned_cols=186 Identities=42% Similarity=0.644 Sum_probs=154.6
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccchhccCchhH
Q psy248 61 YKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQITQVYGFYDE 140 (283)
Q Consensus 61 ~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e 140 (283)
+|||||||++.+|.++++..+..+.+.+||+||+||||+.+.+++.+++.++.. |.++++||||||.+.+....++..+
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~~~~~~~ 79 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFLYGFYDE 79 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCCEEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhhcCCcch
Confidence 489999999999999999999888899999999999999999999999999887 8899999999999988776665543
Q ss_pred H--------HHhhCCCcchhhHhhHhhccCcchh-------------------h----------hhhhhccCCCcCCCC-
Q psy248 141 C--------QTKYGNSNAWKYCCKVFDFLTIAAV-------------------S----------AFCDLVWSDPAEVET- 182 (283)
Q Consensus 141 ~--------~~~~g~~~~~~~~~~~f~~LPlaai-------------------~----------~~~dllWsdP~~~~~- 182 (283)
. ...+....++..+.+++..||+++. . ...+++|++|.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~~~~~~~~~~~~~~~~~~~~~lw~r~~~~~~~ 159 (225)
T cd00144 80 DEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPGLPLEEQIKEEPEDQLPEDLLWSDPLELPGG 159 (225)
T ss_pred hhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCCccchHHhhhcCcccccceeeeecCCCCCCCC
Confidence 2 1223334678889999999999986 0 246789999886333
Q ss_pred cccCCCCCceecChHHHHHHHHhcCceEEEeeeeeeeccceEeeCCeEEEEEcCCCCCccCCCeEEEEE
Q psy248 183 WTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILK 251 (283)
Q Consensus 183 ~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~~y~~~~~N~aavl~ 251 (283)
...+.++. ++++++.|++.++.+.|||||+++..|+.....++++||+|++.|++..+|..+++.
T Consensus 160 ~~~~~~~~----~~~~~~~~~~~~~~~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~~~~~~~~~l~~~~ 224 (225)
T cd00144 160 FGSSRRGG----GPDAVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNKLAALV 224 (225)
T ss_pred CcCCCCCC----CHHHHHHHHHHCCCeEEEEcCccccCccEEcCCCCEEEEecCCcccCCCCccEEEEe
Confidence 23344444 899999999999999999999999999876678889999999999877777776654
No 20
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.87 E-value=6.2e-22 Score=175.25 Aligned_cols=174 Identities=14% Similarity=0.130 Sum_probs=121.7
Q ss_pred EEEcCCCCCHHHHHHHHHhcCC--------CCCCeEEEeCCccCCCCCcHHHHHHHHHhhhc---CCCcEEEeCCCcccc
Q psy248 61 YKESDVFFNFYDLEQLFRTGGQ--------VPDTNYIFMGDFVDRGYYSLETLTRLLTLKAR---WPHRITLLRGNHESR 129 (283)
Q Consensus 61 ~VvGDiHG~~~~L~~ll~~~~~--------~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~---~P~~v~llrGNHE~~ 129 (283)
+|||||||++..|.++|+.+++ .+.+.+|++||+||||+++.+|+.+|++|+.. .+.++++|+||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 5899999999999999999875 35678999999999999999999999999754 457899999999999
Q ss_pred cchhccCch--hHHHHhhC----CCcc---hhhHhhHhhccCcchhhhhhhhccCCCcCC--CCcc-cCCCCCceecChH
Q psy248 130 QITQVYGFY--DECQTKYG----NSNA---WKYCCKVFDFLTIAAVSAFCDLVWSDPAEV--ETWT-VSPRGAGWLFGAK 197 (283)
Q Consensus 130 ~~~~~~gf~--~e~~~~~g----~~~~---~~~~~~~f~~LPlaai~~~~dllWsdP~~~--~~~~-~~~rg~g~~fg~~ 197 (283)
.+...+.+. .+...... ...+ -..+.++++.+|+.....-.-++++.|.+. +.+. +.... .-+..
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~~~~fvHag~~~~w~r~y~~~~~~~---~~~~~ 157 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVNDTLFVHGGLGPLWYRGYSKETSDK---ECAAA 157 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEECCEEEEeCCcHHHHhhHhhhhhhhc---cchHH
Confidence 886543322 11111110 0111 234578999999987611111334433211 0110 00000 00224
Q ss_pred HHHHHHHhcCceEEEeeeeeeeccceEeeCCeEEEEEcCC
Q psy248 198 VTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAP 237 (283)
Q Consensus 198 ~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~ 237 (283)
.+.++++.++.+.||+||++++.|....+++++++|-+.-
T Consensus 158 ~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~g~ 197 (208)
T cd07425 158 HLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDVGM 197 (208)
T ss_pred HHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeCCc
Confidence 6888999999999999999999887657899999998853
No 21
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.85 E-value=1.4e-20 Score=170.49 Aligned_cols=107 Identities=16% Similarity=0.187 Sum_probs=83.9
Q ss_pred CCEEEEcCCCCCHHHHHHHHHhcCCC---------CCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCccc
Q psy248 58 NPLYKESDVFFNFYDLEQLFRTGGQV---------PDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHES 128 (283)
Q Consensus 58 ~~i~VvGDiHG~~~~L~~ll~~~~~~---------~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~ 128 (283)
+++.||||||||++.|.++|+++++. +.+++||||||||||++|.||+.+++++. .+.++++||||||.
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~ 78 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCN 78 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHH
Confidence 36899999999999999999998873 46789999999999999999999999885 45589999999998
Q ss_pred ccchhccC-------chhHHHHhhCC------CcchhhHhhHhhccCcchh
Q psy248 129 RQITQVYG-------FYDECQTKYGN------SNAWKYCCKVFDFLTIAAV 166 (283)
Q Consensus 129 ~~~~~~~g-------f~~e~~~~~g~------~~~~~~~~~~f~~LPlaai 166 (283)
+.++...+ ...+....|.. ..+.+.+.++|+.||++..
T Consensus 79 ~~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~ 129 (245)
T PRK13625 79 KLYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHI 129 (245)
T ss_pred HHHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEE
Confidence 87654321 01122223321 2466788999999999764
No 22
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.82 E-value=1.1e-19 Score=162.37 Aligned_cols=115 Identities=20% Similarity=0.177 Sum_probs=88.2
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCC--------CCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccch
Q psy248 61 YKESDVFFNFYDLEQLFRTGGQV--------PDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQIT 132 (283)
Q Consensus 61 ~VvGDiHG~~~~L~~ll~~~~~~--------~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~ 132 (283)
+||||||||++.|.++|+++++. +.+++|||||||||||+|.||+.+|++++. +.++++|+||||.+.+.
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~--~~~~~~l~GNHE~~ll~ 79 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVD--AGHALAVMGNHEFNAIA 79 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhc--CCCEEEEEccCcHHHHH
Confidence 68999999999999999998774 467899999999999999999999999864 34899999999998764
Q ss_pred hccC------c-----------hhHHHHhhC-CCcchhhHhhHhhccCcchh---------hhhhhhccCCC
Q psy248 133 QVYG------F-----------YDECQTKYG-NSNAWKYCCKVFDFLTIAAV---------SAFCDLVWSDP 177 (283)
Q Consensus 133 ~~~g------f-----------~~e~~~~~g-~~~~~~~~~~~f~~LPlaai---------~~~~dllWsdP 177 (283)
...+ + ..+..+.++ ..+.++.+.++++.||+... +.-.+++|..+
T Consensus 80 ~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~VHAg~~~~l~~~~~ 151 (222)
T cd07413 80 WHTKDPSGGEWLRAHSKKNLRQHQAFLEQFREHSEEHKDWLEWFKTLPLFLDLGGVRVVHACWDETLLKGPE 151 (222)
T ss_pred hhhCCcccchhhhcCCCcccccHHHHHHHHhccchhHHHHHHHHhcCCcEEEECCEEEEECCcCHhhccCCC
Confidence 2211 0 012333343 23567888999999999886 33345677554
No 23
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.81 E-value=1.2e-19 Score=161.45 Aligned_cols=175 Identities=20% Similarity=0.156 Sum_probs=109.2
Q ss_pred cCCCEEEEcCCCCCHHHHHHHHHhcCCC-CCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccchhc
Q psy248 56 CCNPLYKESDVFFNFYDLEQLFRTGGQV-PDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQITQV 134 (283)
Q Consensus 56 ~~~~i~VvGDiHG~~~~L~~ll~~~~~~-~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~~~ 134 (283)
..++++||||||||+..|.++|+.+++. ..++++||||+|||||+|.||+.+|... .++.|+||||.+.++..
T Consensus 15 ~~~ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~~------~~~~v~GNHE~~~l~~~ 88 (218)
T PRK11439 15 QWRHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEEH------WVRAVRGNHEQMALDAL 88 (218)
T ss_pred CCCeEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHHHHHHHHcC------CceEeeCchHHHHHHHH
Confidence 3469999999999999999999999886 5678999999999999999999998653 57899999999887643
Q ss_pred cCchhHHHHhhC--------C--CcchhhHhhHhhccCcchh----hhhhhhccCC-CcCCCCcccCCCCCceecChHHH
Q psy248 135 YGFYDECQTKYG--------N--SNAWKYCCKVFDFLTIAAV----SAFCDLVWSD-PAEVETWTVSPRGAGWLFGAKVT 199 (283)
Q Consensus 135 ~gf~~e~~~~~g--------~--~~~~~~~~~~f~~LPlaai----~~~~dllWsd-P~~~~~~~~~~rg~g~~fg~~~~ 199 (283)
.+-........| . .+.+..+.++++.||+... +.-.-++++. |.....|.........+++.+..
T Consensus 89 ~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p~~~~~~~~~~~~~~~~w~r~~~ 168 (218)
T PRK11439 89 ASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYPADVYEWQKDVDLHQVLWSRSRL 168 (218)
T ss_pred HCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCCCCchhhhccCCccceEEcChhh
Confidence 221000001111 1 1234556689999999864 1112355665 43322222211111224444332
Q ss_pred HHHHH---hcCceEEEeeeeeeeccceEeeCCeEEEEEcCCCC
Q psy248 200 HEFIH---INHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNY 239 (283)
Q Consensus 200 ~~fl~---~~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~~y 239 (283)
.+-.. ..+.+.+|-||++++.-.. .+..+-|=+-.-|
T Consensus 169 ~~~~~~~~~~~~~~vv~GHT~~~~~~~---~~~~i~IDtGav~ 208 (218)
T PRK11439 169 GERQKGQGITGADHFWFGHTPLRHRVD---IGNLHYIDTGAVF 208 (218)
T ss_pred hhccccccccCCCEEEECCccCCCccc---cCCEEEEECCCCC
Confidence 22111 1255689999999864432 2334555554444
No 24
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.81 E-value=3.5e-19 Score=159.98 Aligned_cols=106 Identities=24% Similarity=0.318 Sum_probs=84.1
Q ss_pred CCEEEEcCCCCCHHHHHHHHHhcCCCC----------CCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcc
Q psy248 58 NPLYKESDVFFNFYDLEQLFRTGGQVP----------DTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHE 127 (283)
Q Consensus 58 ~~i~VvGDiHG~~~~L~~ll~~~~~~~----------~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE 127 (283)
+|+.||||||||+..|.++|+++++.+ .+++||||||||||++|.||+.+|.+++.. .++++||||||
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~--~~~~~v~GNHE 78 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAA--GAALCVPGNHD 78 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhC--CcEEEEECCcH
Confidence 479999999999999999999997753 468999999999999999999999998653 47999999999
Q ss_pred cccchhcc--------CchhHHHHhhC--CCcchhhHhhHhhccCcchh
Q psy248 128 SRQITQVY--------GFYDECQTKYG--NSNAWKYCCKVFDFLTIAAV 166 (283)
Q Consensus 128 ~~~~~~~~--------gf~~e~~~~~g--~~~~~~~~~~~f~~LPlaai 166 (283)
.+.++... |+. +....+. ..++.+.+.++++.||+...
T Consensus 79 ~~l~~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~~lP~~~~ 126 (234)
T cd07423 79 NKLYRKLQGRNVKITHGLE-ETVAQLEAESEEFKEEVIEFYESLPSHLV 126 (234)
T ss_pred HHHHHHhcCCCccccCccc-chHHHHhhccHHHHHHHHHHHHhCCcEEE
Confidence 98765432 222 2222332 23566788999999999775
No 25
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.74 E-value=5.4e-18 Score=155.76 Aligned_cols=103 Identities=19% Similarity=0.201 Sum_probs=84.9
Q ss_pred CEEEEcCCCCCHHHHHHHHHhcCCC-CCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccchhccCc
Q psy248 59 PLYKESDVFFNFYDLEQLFRTGGQV-PDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQITQVYGF 137 (283)
Q Consensus 59 ~i~VvGDiHG~~~~L~~ll~~~~~~-~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~~~~gf 137 (283)
.++||||||||++.|.++|+++++. ..++++|+||+|||||+|+||+.++.++. .++++|+||||...+...+|+
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL~~~~g~ 77 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLLAVFAGI 77 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHHHHhcCC
Confidence 5899999999999999999999875 46789999999999999999999998874 468899999999888877765
Q ss_pred h-----hHHHHhhCCCcchhhHhhHhhccCcchh
Q psy248 138 Y-----DECQTKYGNSNAWKYCCKVFDFLTIAAV 166 (283)
Q Consensus 138 ~-----~e~~~~~g~~~~~~~~~~~f~~LPlaai 166 (283)
. +.....+ .....+...+++..+|+...
T Consensus 78 ~~~~~~d~l~~~l-~a~~~~ell~wLr~lPl~i~ 110 (279)
T TIGR00668 78 SRNKPKDRLDPLL-EAPDADELLNWLRRQPLLQH 110 (279)
T ss_pred CccCchHHHHHHH-HccCHHHHHHHHHcCCcEEE
Confidence 2 2222222 23566788999999999863
No 26
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.73 E-value=6.5e-18 Score=154.18 Aligned_cols=103 Identities=19% Similarity=0.201 Sum_probs=82.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhcCCC-CCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccchhccCch
Q psy248 60 LYKESDVFFNFYDLEQLFRTGGQV-PDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQITQVYGFY 138 (283)
Q Consensus 60 i~VvGDiHG~~~~L~~ll~~~~~~-~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~~~~gf~ 138 (283)
++||||||||+..|.++|+++++. +.++++|+||+|||||+|+||+.+|.+++ .++++|+||||.+.++..+|+.
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~~~g~~ 76 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAVAAGIK 76 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHHhcCcc
Confidence 489999999999999999999875 57889999999999999999999999986 4799999999999887655543
Q ss_pred hH----HHHhhCCCcchhhHhhHhhccCcchh
Q psy248 139 DE----CQTKYGNSNAWKYCCKVFDFLTIAAV 166 (283)
Q Consensus 139 ~e----~~~~~g~~~~~~~~~~~f~~LPlaai 166 (283)
.. ....+-.....+.+.+++..+|++..
T Consensus 77 ~~~~~~t~~~~l~~~~~~~~~~wLr~lPl~~~ 108 (257)
T cd07422 77 KPKKKDTLDDILNAPDRDELLDWLRHQPLLHR 108 (257)
T ss_pred ccccHhHHHHHHhccchHHHHHHHHhCCCEEE
Confidence 11 11111112344678899999999876
No 27
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.71 E-value=2.5e-17 Score=151.69 Aligned_cols=105 Identities=18% Similarity=0.193 Sum_probs=83.3
Q ss_pred CCEEEEcCCCCCHHHHHHHHHhcCCC-CCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccchhccC
Q psy248 58 NPLYKESDVFFNFYDLEQLFRTGGQV-PDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQITQVYG 136 (283)
Q Consensus 58 ~~i~VvGDiHG~~~~L~~ll~~~~~~-~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~~~~g 136 (283)
++++||||||||+..|.++++++++. ..+.++|+||+|||||+|.||+.++.++ +.++++|+||||.+.+...+|
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l----~~~~~~VlGNHD~~ll~~~~g 76 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSL----GDSAVTVLGNHDLHLLAVAAG 76 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhc----CCCeEEEecChhHHHHHhhcC
Confidence 36899999999999999999999874 5678999999999999999999999987 347999999999988776655
Q ss_pred chh----HHHHhhCCCcchhhHhhHhhccCcchh
Q psy248 137 FYD----ECQTKYGNSNAWKYCCKVFDFLTIAAV 166 (283)
Q Consensus 137 f~~----e~~~~~g~~~~~~~~~~~f~~LPlaai 166 (283)
... +....+-.....+.+.++++.+|+...
T Consensus 77 ~~~~~~~~~l~~~l~~~~~~~~~~~L~~lPl~~~ 110 (275)
T PRK00166 77 IKRNKKKDTLDPILEAPDRDELLDWLRHQPLLHV 110 (275)
T ss_pred CccccchhHHHHHHccccHHHHHHHHHCCCcEEE
Confidence 431 111222122445668899999999765
No 28
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.71 E-value=1.8e-17 Score=147.65 Aligned_cols=157 Identities=16% Similarity=0.118 Sum_probs=98.0
Q ss_pred CCCEEEEcCCCCCHHHHHHHHHhcCCC-CCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccchhcc
Q psy248 57 CNPLYKESDVFFNFYDLEQLFRTGGQV-PDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQITQVY 135 (283)
Q Consensus 57 ~~~i~VvGDiHG~~~~L~~ll~~~~~~-~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~~~~ 135 (283)
.++++||||||||+..|.++++...+. ..+.++|+||+||||++|.||+.+|.+ .+++.||||||.+.+....
T Consensus 14 ~~ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE~~~~~~~~ 87 (218)
T PRK09968 14 YRHIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHEAMALDAFE 87 (218)
T ss_pred CCeEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchHHHHHHHHh
Confidence 369999999999999999999998864 467899999999999999999998854 2688999999998775331
Q ss_pred CchhHHHHhhCC--------C--cchhhHhhHhhccCcchh----hhhhhhccCCC-cCCCCcccCCCCCceecChHHHH
Q psy248 136 GFYDECQTKYGN--------S--NAWKYCCKVFDFLTIAAV----SAFCDLVWSDP-AEVETWTVSPRGAGWLFGAKVTH 200 (283)
Q Consensus 136 gf~~e~~~~~g~--------~--~~~~~~~~~f~~LPlaai----~~~~dllWsdP-~~~~~~~~~~rg~g~~fg~~~~~ 200 (283)
.-........|. + .......++++.||+... +.-.-++++.+ .....+.....-...+++.+...
T Consensus 88 ~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p~~~~~~~~~~~~~~~~w~r~~~~ 167 (218)
T PRK09968 88 TGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYPGDEYDFGKEIAESELLWPVDRVQ 167 (218)
T ss_pred cCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCCCchhhhccccchhhceeCcHHHh
Confidence 100000001111 0 122234558899998875 11123566663 22111110000011234433332
Q ss_pred HHHH-----hcCceEEEeeeeeee
Q psy248 201 EFIH-----INHLKLICRAHQLVH 219 (283)
Q Consensus 201 ~fl~-----~~~l~~iIRgHq~v~ 219 (283)
+..+ ..+.+.+|.||++.+
T Consensus 168 ~~~~~~~~~~~~~~~vv~GHTh~~ 191 (218)
T PRK09968 168 KSLNGELQQINGADYFIFGHMMFD 191 (218)
T ss_pred hCccccccccCCCCEEEECCCCcC
Confidence 2221 346789999999875
No 29
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.66 E-value=2.5e-16 Score=138.76 Aligned_cols=103 Identities=22% Similarity=0.268 Sum_probs=81.7
Q ss_pred CCEEEEcCCCCCHHHHHHHHHhcCCC-CCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccchhccC
Q psy248 58 NPLYKESDVFFNFYDLEQLFRTGGQV-PDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQITQVYG 136 (283)
Q Consensus 58 ~~i~VvGDiHG~~~~L~~ll~~~~~~-~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~~~~g 136 (283)
++++|+|||||++..|.++++..++. ..+.++|+||+||||+++.|++.+|.. .++++|+||||.+.+....+
T Consensus 1 ~ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~~~~~~~ 74 (207)
T cd07424 1 GRDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMAIDALRA 74 (207)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHHHhHhhC
Confidence 47899999999999999999998874 467899999999999999999998865 26899999999998876544
Q ss_pred --chhHHHHhhCCC--------cchhhHhhHhhccCcchh
Q psy248 137 --FYDECQTKYGNS--------NAWKYCCKVFDFLTIAAV 166 (283)
Q Consensus 137 --f~~e~~~~~g~~--------~~~~~~~~~f~~LPlaai 166 (283)
...+...+.+.. ++++...++++.||+...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~ 114 (207)
T cd07424 75 EPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIE 114 (207)
T ss_pred CCcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEE
Confidence 222333333331 245567889999999885
No 30
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.66 E-value=1.2e-16 Score=147.58 Aligned_cols=74 Identities=24% Similarity=0.366 Sum_probs=64.6
Q ss_pred CEEEEcCCCCCHHHHHHHHHhcCCC------CCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCC-cEEEeCCCcccccc
Q psy248 59 PLYKESDVFFNFYDLEQLFRTGGQV------PDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPH-RITLLRGNHESRQI 131 (283)
Q Consensus 59 ~i~VvGDiHG~~~~L~~ll~~~~~~------~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~-~v~llrGNHE~~~~ 131 (283)
++++||||||+++.|.++|+.+... ..+.+||||||||||++|.+|+.+|.+++..+|. ++++|+||||.+.+
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l 82 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA 82 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence 6899999999999999999865421 2457999999999999999999999999988876 68999999998765
Q ss_pred h
Q psy248 132 T 132 (283)
Q Consensus 132 ~ 132 (283)
.
T Consensus 83 ~ 83 (304)
T cd07421 83 A 83 (304)
T ss_pred h
Confidence 4
No 31
>PHA02239 putative protein phosphatase
Probab=99.66 E-value=2.7e-16 Score=141.87 Aligned_cols=74 Identities=23% Similarity=0.437 Sum_probs=64.0
Q ss_pred CCEEEEcCCCCCHHHHHHHHHhcCCC--CCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccch
Q psy248 58 NPLYKESDVFFNFYDLEQLFRTGGQV--PDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQIT 132 (283)
Q Consensus 58 ~~i~VvGDiHG~~~~L~~ll~~~~~~--~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~ 132 (283)
+++++||||||++..|.++++.+... +.+.+||+|||||||+.|.+++..++.+.. .+.+++.|+||||.+.+.
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~~l~ 76 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDEFYN 76 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHHHHH
Confidence 36899999999999999999987543 467899999999999999999999998753 456899999999998664
No 32
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.13 E-value=7.3e-11 Score=94.92 Aligned_cols=77 Identities=22% Similarity=0.216 Sum_probs=59.5
Q ss_pred CEEEEcCCCCCHHHH----HHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHH--HHhhhcCCCcEEEeCCCcccccch
Q psy248 59 PLYKESDVFFNFYDL----EQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRL--LTLKARWPHRITLLRGNHESRQIT 132 (283)
Q Consensus 59 ~i~VvGDiHG~~~~L----~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l--~~lk~~~P~~v~llrGNHE~~~~~ 132 (283)
+|+++||+|+..... ..+.+.....+.+.+|++||+++++..+.+..... .......+.++++++||||.....
T Consensus 2 ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~~~ 81 (200)
T PF00149_consen 2 RILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYSGN 81 (200)
T ss_dssp EEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHHHH
T ss_pred eEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhccccccccccccccceec
Confidence 689999999999987 34444444556778999999999999887777665 555566778999999999998765
Q ss_pred hcc
Q psy248 133 QVY 135 (283)
Q Consensus 133 ~~~ 135 (283)
...
T Consensus 82 ~~~ 84 (200)
T PF00149_consen 82 SFY 84 (200)
T ss_dssp HHH
T ss_pred ccc
Confidence 443
No 33
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.09 E-value=1.7e-09 Score=90.26 Aligned_cols=60 Identities=22% Similarity=0.178 Sum_probs=49.0
Q ss_pred CEEEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCccccc
Q psy248 59 PLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQ 130 (283)
Q Consensus 59 ~i~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~ 130 (283)
++.++||+||+...+.++++.... .+.++++||+++++..+. ++ ....++.++||||...
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~~--~d~ii~~GD~~~~~~~~~--------~~--~~~~~~~V~GNhD~~~ 60 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFGD--VDLIIHAGDVLYPGPLNE--------LE--LKAPVIAVRGNCDGEV 60 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcC--CCEEEECCccccccccch--------hh--cCCcEEEEeCCCCCcC
Confidence 578999999999999999988654 678999999999998655 11 2346999999999753
No 34
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.02 E-value=2.6e-09 Score=88.26 Aligned_cols=152 Identities=18% Similarity=0.180 Sum_probs=85.6
Q ss_pred CCEEEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccchhccCc
Q psy248 58 NPLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQITQVYGF 137 (283)
Q Consensus 58 ~~i~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~~~~gf 137 (283)
++|.++||+|++...+.++++.+ ...+.++++||++++ .+++..+... +++.++||||..........
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~--~~~d~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~~~~~~~~ 68 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI--NEPDFVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWAFPNENDE 68 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH--TTESEEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTHHHSEECT
T ss_pred CEEEEEeCCCCChhHHHHHHHHh--cCCCEEEECCCchhH----HHHHHHHhcC------CEEEEeCCcccccchhhhhc
Confidence 37899999999999999999988 346779999999993 7777777555 69999999996543221100
Q ss_pred hhHHHHhhCCCcchhhHhhHhhccCcchhhhhhhhccCCCcCCCCcccCCCCCceecChHHHHHHHHhcCceEEEeeeee
Q psy248 138 YDECQTKYGNSNAWKYCCKVFDFLTIAAVSAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQL 217 (283)
Q Consensus 138 ~~e~~~~~g~~~~~~~~~~~f~~LPlaai~~~~dllWsdP~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~ 217 (283)
+. +.+...+...+.-.-++..+|.. ...+.+.+.+.+...+.++++.||.+
T Consensus 69 -----------~~------~~~~~~~~~~~~~i~~~H~~~~~------------~~~~~~~~~~~~~~~~~~~~~~GH~H 119 (156)
T PF12850_consen 69 -----------EY------LLDALRLTIDGFKILLSHGHPYD------------VQWDPAELREILSRENVDLVLHGHTH 119 (156)
T ss_dssp -----------CS------SHSEEEEEETTEEEEEESSTSSS------------STTTHHHHHHHHHHTTSSEEEESSSS
T ss_pred -----------cc------cccceeeeecCCeEEEECCCCcc------------cccChhhhhhhhcccCCCEEEcCCcc
Confidence 00 00000000001111123333321 12456677788889999999999999
Q ss_pred eeccceEeeCCeEEEEEcCCCCCccCCCeEEEEEEe
Q psy248 218 VHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFN 253 (283)
Q Consensus 218 v~~G~~~~~~~~~iTifSa~~y~~~~~N~aavl~i~ 253 (283)
.+.-.+ ..+..+++.-|.... ..+...++++++
T Consensus 120 ~~~~~~-~~~~~~~~~Gs~~~~--~~~~~~~~~i~~ 152 (156)
T PF12850_consen 120 RPQVFK-IGGIHVINPGSIGGP--RHGDQSGYAILD 152 (156)
T ss_dssp SEEEEE-ETTEEEEEE-GSSS---SSSSSEEEEEEE
T ss_pred cceEEE-ECCEEEEECCcCCCC--CCCCCCEEEEEE
Confidence 754333 223334444333222 122356666664
No 35
>PRK09453 phosphodiesterase; Provisional
Probab=98.94 E-value=1.7e-09 Score=93.28 Aligned_cols=68 Identities=21% Similarity=0.181 Sum_probs=55.0
Q ss_pred CCEEEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCC--------cHHHHHHHHHhhhcCCCcEEEeCCCcccc
Q psy248 58 NPLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYY--------SLETLTRLLTLKARWPHRITLLRGNHESR 129 (283)
Q Consensus 58 ~~i~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~--------s~e~l~~l~~lk~~~P~~v~llrGNHE~~ 129 (283)
+++.|++|+||++..+.++++.+...+.+.++++||++|+|+. ..+++..+..+ +.++++++||||..
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~----~~~v~~V~GNhD~~ 76 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY----ADKIIAVRGNCDSE 76 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhc----CCceEEEccCCcch
Confidence 4789999999999999999988765667889999999999873 45666666544 24799999999974
No 36
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.84 E-value=4.6e-08 Score=82.33 Aligned_cols=63 Identities=19% Similarity=0.120 Sum_probs=49.0
Q ss_pred CCEEEEcCCCCCHHHHHHHHHhcCCC-CCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccc
Q psy248 58 NPLYKESDVFFNFYDLEQLFRTGGQV-PDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESR 129 (283)
Q Consensus 58 ~~i~VvGDiHG~~~~L~~ll~~~~~~-~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~ 129 (283)
+++.|++|+||+...+..+++..... +.+.++++||++ +.+++..+..+. .+++.++||||..
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~~ 64 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDGE 64 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCch
Confidence 36899999999998877766665554 567899999998 457777765542 2599999999973
No 37
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.82 E-value=3.3e-08 Score=81.03 Aligned_cols=118 Identities=19% Similarity=0.127 Sum_probs=74.2
Q ss_pred CEEEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcH--HHHHHHHHhhhcCCCcEEEeCCCcccccchhccC
Q psy248 59 PLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSL--ETLTRLLTLKARWPHRITLLRGNHESRQITQVYG 136 (283)
Q Consensus 59 ~i~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~--e~l~~l~~lk~~~P~~v~llrGNHE~~~~~~~~g 136 (283)
++.++||+||+.. .....+.+.++++||+++++..+- +.+.++..++ .| .+++++||||....
T Consensus 1 ~i~~isD~H~~~~-------~~~~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~~-~~~~v~GNHD~~~~----- 65 (135)
T cd07379 1 RFVCISDTHSRHR-------TISIPDGDVLIHAGDLTERGTLEELQKFLDWLKSLP--HP-HKIVIAGNHDLTLD----- 65 (135)
T ss_pred CEEEEeCCCCCCC-------cCcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhCC--CC-eEEEEECCCCCcCC-----
Confidence 4789999999987 122345677999999999886432 2344444332 22 36789999996422
Q ss_pred chhHHHHhhCCCcchhhHhhHhhccCcchhhhhhhhccCCCcCCCCcccCCCCCceecChHHHHHHHHhcCceEEEeeee
Q psy248 137 FYDECQTKYGNSNAWKYCCKVFDFLTIAAVSAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQ 216 (283)
Q Consensus 137 f~~e~~~~~g~~~~~~~~~~~f~~LPlaai~~~~dllWsdP~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq 216 (283)
..... .-+.+.-|.....+ +......|.+.+.+++++.+.+++|-||.
T Consensus 66 --------~~~~~--------------------ilv~H~~p~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~i~GH~ 113 (135)
T cd07379 66 --------PEDTD--------------------ILVTHGPPYGHLDL----VSSGQRVGCEELLNRVQRVRPKLHVFGHI 113 (135)
T ss_pred --------CCCCE--------------------EEEECCCCCcCccc----cccCcccCCHHHHHHHHHHCCcEEEEcCc
Confidence 00000 01233333322211 00112457888899999999999999999
Q ss_pred eeeccce
Q psy248 217 LVHEGYK 223 (283)
Q Consensus 217 ~v~~G~~ 223 (283)
+.+.|++
T Consensus 114 H~~~~~~ 120 (135)
T cd07379 114 HEGYGAE 120 (135)
T ss_pred CCcCcee
Confidence 9988876
No 38
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=98.81 E-value=1.5e-08 Score=85.70 Aligned_cols=67 Identities=18% Similarity=0.038 Sum_probs=47.4
Q ss_pred EEEEcCCCCCHHHHHHHH-HhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccc
Q psy248 60 LYKESDVFFNFYDLEQLF-RTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESR 129 (283)
Q Consensus 60 i~VvGDiHG~~~~L~~ll-~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~ 129 (283)
+.+++|+|++...+...+ +.....+.+.++++||+++++....... ++. ....+..+++++||||..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~~~~~~~~-~~~--~~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLTDAPRFAP-LLL--ALKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCcchHHHHH-HHH--hhcCCccEEEeCCCcceE
Confidence 468999999987776655 2233345567999999999887655543 222 223456899999999986
No 39
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=98.74 E-value=7.6e-08 Score=81.85 Aligned_cols=66 Identities=20% Similarity=0.175 Sum_probs=47.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCc-HHHHHHHHHhhhcCCCcEEEeCCCcccccc
Q psy248 60 LYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYS-LETLTRLLTLKARWPHRITLLRGNHESRQI 131 (283)
Q Consensus 60 i~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s-~e~l~~l~~lk~~~P~~v~llrGNHE~~~~ 131 (283)
|.++||+||++..+.. ......+.+-+|+.||++++|... .+.+..+.. .+..++.++||||....
T Consensus 1 i~~~sD~H~~~~~~~~--~~~~~~~~D~vv~~GDl~~~~~~~~~~~~~~l~~----~~~p~~~v~GNHD~~~~ 67 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IILKAEEADAVIVAGDITNFGGKEAAVEINLLLA----IGVPVLAVPGNCDTPEI 67 (188)
T ss_pred CEEEEecCCCHHHHHH--HHhhccCCCEEEECCCccCcCCHHHHHHHHHHHh----cCCCEEEEcCCCCCHHH
Confidence 5789999999998876 333334557799999999998753 333333332 34579999999998654
No 40
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.66 E-value=2.2e-07 Score=72.93 Aligned_cols=117 Identities=20% Similarity=0.166 Sum_probs=77.8
Q ss_pred EEEcCCCCCHHHHHHHH--HhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccchhccCch
Q psy248 61 YKESDVFFNFYDLEQLF--RTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQITQVYGFY 138 (283)
Q Consensus 61 ~VvGDiHG~~~~L~~ll--~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~~~~gf~ 138 (283)
+++||+|+......... ........+.+|++||+++.+....+...............++++.||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD----------- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD----------- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce-----------
Confidence 37899999999888765 33334555779999999999988777665533444455678999999999
Q ss_pred hHHHHhhCCCcchhhHhhHhhccCcchhhhhhhhccCCCcCCCCcccCCCCCceecChHHHHHHHHhcCceEEEeeeeee
Q psy248 139 DECQTKYGNSNAWKYCCKVFDFLTIAAVSAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLV 218 (283)
Q Consensus 139 ~e~~~~~g~~~~~~~~~~~f~~LPlaai~~~~dllWsdP~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v 218 (283)
=++.+.|. |..... ..+ ........+...+.+.+..++|.||.+.
T Consensus 70 -----------------i~~~H~~~----------~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~GH~H~ 114 (131)
T cd00838 70 -----------------ILLTHGPP----------YDPLDE-LSP-------DEDPGSEALLELLEKYGVDLVLSGHTHV 114 (131)
T ss_pred -----------------EEEeccCC----------CCCchh-hcc-------cchhhHHHHHHHHHHhCCCEEEeCCeec
Confidence 00011110 100000 000 0011577888899999999999999998
Q ss_pred eccce
Q psy248 219 HEGYK 223 (283)
Q Consensus 219 ~~G~~ 223 (283)
...+.
T Consensus 115 ~~~~~ 119 (131)
T cd00838 115 YERRE 119 (131)
T ss_pred ccccc
Confidence 76654
No 41
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.63 E-value=7.8e-07 Score=76.95 Aligned_cols=153 Identities=12% Similarity=0.101 Sum_probs=85.7
Q ss_pred CEEEEcCCC-CCHH-----HHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccch
Q psy248 59 PLYKESDVF-FNFY-----DLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQIT 132 (283)
Q Consensus 59 ~i~VvGDiH-G~~~-----~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~ 132 (283)
.|.|++|.| |... .+.++++. .+.+.++.+||+++ .+++.++..+. .+++.++||||...
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~---~~~d~iih~GDi~~-----~~~~~~l~~~~----~~~~~V~GN~D~~~-- 66 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVP---GKIQHVLCTGNLCS-----KETYDYLKTIA----PDVHIVRGDFDENL-- 66 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhcc---CCCCEEEECCCCCC-----HHHHHHHHhhC----CceEEEECCCCccc--
Confidence 478999999 6543 34555543 34578999999987 67777776652 25899999999631
Q ss_pred hccCchhHHHHhhCCCcchhhHhhHhhccCcchh----hhhhhhccCCCcCCCCcccCCCCCceecChHHHHHHHHhcCc
Q psy248 133 QVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV----SAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHL 208 (283)
Q Consensus 133 ~~~gf~~e~~~~~g~~~~~~~~~~~f~~LPlaai----~~~~dllWsdP~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~l 208 (283)
.||.... +.-.-+++..+. .+ ....+.+.++.++.+.
T Consensus 67 ---------------------------~lp~~~~~~~~g~~i~l~HG~~~-------~~-----~~~~~~~~~~~~~~~~ 107 (178)
T cd07394 67 ---------------------------NYPETKVITVGQFKIGLIHGHQV-------VP-----WGDPDSLAALQRQLDV 107 (178)
T ss_pred ---------------------------cCCCcEEEEECCEEEEEEECCcC-------CC-----CCCHHHHHHHHHhcCC
Confidence 1222211 111112332221 01 1135667778888999
Q ss_pred eEEEeeeeeeeccceEeeCCeEEEEEcCCCC-Cc-cCCCeEEEEEEe-CCCceeeEEEec
Q psy248 209 KLICRAHQLVHEGYKYMFDGNLVTIWSAPNY-CY-RCGNIASILKFN-SVDNRTPALFQA 265 (283)
Q Consensus 209 ~~iIRgHq~v~~G~~~~~~~~~iTifSa~~y-~~-~~~N~aavl~i~-~~~~~~~~~~~~ 265 (283)
+++|.||++.+.-. ...+..++.-=|+..- .. +..+.+.+++++ ++..+++..|+-
T Consensus 108 dvii~GHTH~p~~~-~~~g~~viNPGSv~~~~~~~~~~~~~syail~~~~~~~~~~~~~l 166 (178)
T cd07394 108 DILISGHTHKFEAF-EHEGKFFINPGSATGAFSPLDPNVIPSFVLMDIQGSKVVTYVYQL 166 (178)
T ss_pred CEEEECCCCcceEE-EECCEEEEECCCCCCCCCCCCCCCCCeEEEEEecCCeEEEEEEEE
Confidence 99999999986332 2222233332233210 11 112334555543 344566676655
No 42
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.59 E-value=1.3e-07 Score=84.96 Aligned_cols=71 Identities=11% Similarity=0.095 Sum_probs=57.4
Q ss_pred CCEEEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccc
Q psy248 58 NPLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESR 129 (283)
Q Consensus 58 ~~i~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~ 129 (283)
.++.+++|+||++..+.++++.......+.+|.+||++++|+..-++..++..+.. .+.+++.++||||..
T Consensus 5 ~kIl~iSDiHgn~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~-l~~pv~~V~GNhD~~ 75 (224)
T cd07388 5 RYVLATSNPKGDLEALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGE-AHLPTFYVPGPQDAP 75 (224)
T ss_pred eEEEEEEecCCCHHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHh-cCCceEEEcCCCChH
Confidence 57999999999999999999876555668899999999999766666666655532 234799999999985
No 43
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.57 E-value=1.6e-06 Score=78.18 Aligned_cols=193 Identities=13% Similarity=0.113 Sum_probs=100.9
Q ss_pred CCEEEEcCCCCCH------HHHHHHHHhcCCCCCCeEEEeCCccCCC-------CCcHHHHHHHHHhhhcCCCcEEEeCC
Q psy248 58 NPLYKESDVFFNF------YDLEQLFRTGGQVPDTNYIFMGDFVDRG-------YYSLETLTRLLTLKARWPHRITLLRG 124 (283)
Q Consensus 58 ~~i~VvGDiHG~~------~~L~~ll~~~~~~~~~~~vfLGD~vDrG-------~~s~e~l~~l~~lk~~~P~~v~llrG 124 (283)
+++++++|+|... ..+.+.++.. ....+.++++||++|.. +...+++.+|..++.. +-++++++|
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~-~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~-g~~v~~v~G 78 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGE-ARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDS-GVPCYFMHG 78 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhh-hccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHc-CCeEEEEeC
Confidence 4789999999542 2344555432 13457799999999852 2345677777777542 347999999
Q ss_pred Ccccccchh---ccC---chhH---------HHHhhCC-----CcchhhH---------hhHhhccCcchh-hhhhhhcc
Q psy248 125 NHESRQITQ---VYG---FYDE---------CQTKYGN-----SNAWKYC---------CKVFDFLTIAAV-SAFCDLVW 174 (283)
Q Consensus 125 NHE~~~~~~---~~g---f~~e---------~~~~~g~-----~~~~~~~---------~~~f~~LPlaai-~~~~dllW 174 (283)
|||...... ..| +.+. +.-..|+ ...|..+ ..+|..+|+... .+...+-.
T Consensus 79 NHD~~~~~~~~~~~g~~~l~~~~~~~~~g~~i~l~HGd~~~~~d~~y~~~r~~~r~~~~~~~~~~~p~~~~~~ia~~~~~ 158 (241)
T PRK05340 79 NRDFLLGKRFAKAAGMTLLPDPSVIDLYGQRVLLLHGDTLCTDDKAYQRFRRKVRNPWLQWLFLALPLSIRLRIAAKMRA 158 (241)
T ss_pred CCchhhhHHHHHhCCCEEeCCcEEEEECCEEEEEECCcccccCCHHHHHHHHHHhCHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999643210 011 0000 0001111 1223322 335556666433 11111100
Q ss_pred -CCCcCCCCcccCCCCCc-eecChHHHHHHHHhcCceEEEeeeeeeeccceEeeCCeEEEEEcCCCCCccCCCeEEEEEE
Q psy248 175 -SDPAEVETWTVSPRGAG-WLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKF 252 (283)
Q Consensus 175 -sdP~~~~~~~~~~rg~g-~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~~y~~~~~N~aavl~i 252 (283)
|..... .+... .-...+.+.+.+++.+++.+|.||.+.+.-.....++.-++-.+-+.. ...+.++.+
T Consensus 159 ~s~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~~~~~~~~~~lgdw----~~~~~~~~~ 228 (241)
T PRK05340 159 KSKAANQ------SKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAIHQLQAGGQPATRIVLGDW----HEQGSVLKV 228 (241)
T ss_pred HHHHhcC------CCcccccCCCHHHHHHHHHHhCCCEEEECcccCcceeeccCCCcceEEEEeCCC----CCCCeEEEE
Confidence 000000 01111 123457788888999999999999997644433233312232333443 233778888
Q ss_pred eCCCceeeEEE
Q psy248 253 NSVDNRTPALF 263 (283)
Q Consensus 253 ~~~~~~~~~~~ 263 (283)
++. ..+++.+
T Consensus 229 ~~~-~~~~~~~ 238 (241)
T PRK05340 229 DAD-GVELIPF 238 (241)
T ss_pred ECC-ceEEEeC
Confidence 664 4666554
No 44
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=98.56 E-value=2.8e-06 Score=75.33 Aligned_cols=189 Identities=13% Similarity=0.121 Sum_probs=91.9
Q ss_pred CEEEEcCCCCCHH----HH----HHHHHhcCCCCCCeEEEeCCccCCCCCc--HHHH-HHHHHhhhcCCCcEEEeCCCcc
Q psy248 59 PLYKESDVFFNFY----DL----EQLFRTGGQVPDTNYIFMGDFVDRGYYS--LETL-TRLLTLKARWPHRITLLRGNHE 127 (283)
Q Consensus 59 ~i~VvGDiHG~~~----~L----~~ll~~~~~~~~~~~vfLGD~vDrG~~s--~e~l-~~l~~lk~~~P~~v~llrGNHE 127 (283)
+++++||+|-... .+ ..+.+.......+.+|++||+++.+... .+.+ ..+..|. +.+-.+++++||||
T Consensus 2 ~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~-~~~~p~~~~~GNHD 80 (214)
T cd07399 2 TLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLD-KAGIPYSVLAGNHD 80 (214)
T ss_pred EEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHH-HcCCcEEEECCCCc
Confidence 5789999995332 22 2333443333456789999999998743 2222 2233332 12346899999999
Q ss_pred cccchhccCchhHHHHhhCCCcchhhHhhHhhc---cCcchhhhhhhhccCCCcCCCCcccCCCC-CceecChHHHHHHH
Q psy248 128 SRQITQVYGFYDECQTKYGNSNAWKYCCKVFDF---LTIAAVSAFCDLVWSDPAEVETWTVSPRG-AGWLFGAKVTHEFI 203 (283)
Q Consensus 128 ~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~f~~---LPlaai~~~~dllWsdP~~~~~~~~~~rg-~g~~fg~~~~~~fl 203 (283)
.. +...+... .+-+.-+.+..+. .|.... .-..+|.+.. +..+... ....-+.+.+.+.+
T Consensus 81 ~~-~~ld~~~~---------~~ql~WL~~~L~~~~~~~~iv~--~H~p~~~~~~----~~~~~~~~~~~~~~~~~~~~ll 144 (214)
T cd07399 81 LV-LALEFGPR---------DEVLQWANEVLKKHPDRPAILT--THAYLNCDDS----RPDSIDYDSDVNDGQQIWDKLV 144 (214)
T ss_pred ch-hhCCCCCC---------HHHHHHHHHHHHHCCCCCEEEE--ecccccCCCC----cCcccccccccccHHHHHHHHH
Confidence 42 21111100 0111111111111 121100 0011221111 1000000 01123556777889
Q ss_pred Hhc-CceEEEeeeeeeeccceEe-----eCCeEEEEEcCCCCCccCCCeE-EEEEEeCC-CceeeEEEec
Q psy248 204 HIN-HLKLICRAHQLVHEGYKYM-----FDGNLVTIWSAPNYCYRCGNIA-SILKFNSV-DNRTPALFQA 265 (283)
Q Consensus 204 ~~~-~l~~iIRgHq~v~~G~~~~-----~~~~~iTifSa~~y~~~~~N~a-avl~i~~~-~~~~~~~~~~ 265 (283)
++. ++++++-||.+.. +.... .++.+..+.+........+|.. .++.+++. +++.+..|.|
T Consensus 145 ~~~~~V~~v~~GH~H~~-~~~~~~~~~~~g~~v~~~~~~~q~~~~~g~~~~r~~~f~~~~~~i~~~tysp 213 (214)
T cd07399 145 KKNDNVFMVLSGHVHGA-GRTTLVSVGDAGRTVHQMLADYQGEPNGGNGFLRLLEFDPDNNKIDVRTYSP 213 (214)
T ss_pred hCCCCEEEEEccccCCC-ceEEEcccCCCCCEeeEEeecccCCCCCCcceEEEEEEecCCCEEEEEeCCC
Confidence 888 8999999998853 22222 1344555544332222223322 56677765 5788888754
No 45
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.55 E-value=7.4e-07 Score=80.71 Aligned_cols=147 Identities=16% Similarity=0.195 Sum_probs=88.9
Q ss_pred CEEEEcCCCCCHHHHH-HHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccchhc---
Q psy248 59 PLYKESDVFFNFYDLE-QLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQITQV--- 134 (283)
Q Consensus 59 ~i~VvGDiHG~~~~L~-~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~~~--- 134 (283)
+|+++|||||+..... +.++.. ..+.++++||+++ .+.+++..|..+ |.+++.++||||.......
T Consensus 2 rIa~isDiHg~~~~~~~~~l~~~---~pD~Vl~~GDi~~---~~~~~~~~l~~l----~~p~~~V~GNHD~~~~~~~~~k 71 (238)
T cd07397 2 RIAIVGDVHGQWDLEDIKALHLL---QPDLVLFVGDFGN---ESVQLVRAISSL----PLPKAVILGNHDAWYDATFRKK 71 (238)
T ss_pred EEEEEecCCCCchHHHHHHHhcc---CCCEEEECCCCCc---ChHHHHHHHHhC----CCCeEEEcCCCcccccccccch
Confidence 6899999999987642 334332 3478999999986 356777766554 3468999999997553200
Q ss_pred -----------------cC------------------------ch-hHHHHhhCCCcchhhHhhHhhccCcchh-hhhhh
Q psy248 135 -----------------YG------------------------FY-DECQTKYGNSNAWKYCCKVFDFLTIAAV-SAFCD 171 (283)
Q Consensus 135 -----------------~g------------------------f~-~e~~~~~g~~~~~~~~~~~f~~LPlaai-~~~~d 171 (283)
++ +. .+++..|+....++++..+++.++.++. ....-
T Consensus 72 ~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~ive~~~~~~~~~~~Vl 151 (238)
T cd07397 72 GDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRIIAAAKKAPPDLPLIL 151 (238)
T ss_pred HHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHHHHhhhcCCCCCeEE
Confidence 00 11 2567777766777777777777752222 10001
Q ss_pred hccCCCcC---------CCCcccCCCCCceecChHHHHHHHHhcC----ceEEEeeeeeee
Q psy248 172 LVWSDPAE---------VETWTVSPRGAGWLFGAKVTHEFIHINH----LKLICRAHQLVH 219 (283)
Q Consensus 172 llWsdP~~---------~~~~~~~~rg~g~~fg~~~~~~fl~~~~----l~~iIRgHq~v~ 219 (283)
+.+.-|.. -.+|.+. |--+|...+.+-+++.. +++.+-||-+..
T Consensus 152 iaH~~~~G~g~~~~~~cg~d~~~~----~~~~G~~~l~~ai~~~~~~~~~~l~~fGH~H~~ 208 (238)
T cd07397 152 LAHNGPSGLGSDAEDPCGRDWKPP----GGDWGDPDLALAISQIQQGRQVPLVVFGHMHHR 208 (238)
T ss_pred EeCcCCcCCCcccccccccccCCc----CCCCCCHHHHHHHHHHhccCCCCEEEeCCccCc
Confidence 11111221 2234332 12367777766666554 799999998864
No 46
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.55 E-value=4.5e-07 Score=81.23 Aligned_cols=187 Identities=11% Similarity=0.088 Sum_probs=98.7
Q ss_pred EEEcCCCCCH------HHHHHHHHhcCCCCCCeEEEeCCccCCC-----CC--cHHHHHHHHHhhhcCCCcEEEeCCCcc
Q psy248 61 YKESDVFFNF------YDLEQLFRTGGQVPDTNYIFMGDFVDRG-----YY--SLETLTRLLTLKARWPHRITLLRGNHE 127 (283)
Q Consensus 61 ~VvGDiHG~~------~~L~~ll~~~~~~~~~~~vfLGD~vDrG-----~~--s~e~l~~l~~lk~~~P~~v~llrGNHE 127 (283)
++++|+|... ..+.+.++.... ..+.++++||++|.. +. ..++...+..|+.. +.++++++||||
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~-~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~-~~~v~~v~GNHD 79 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEAR-KADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQ-GVPCYFMHGNRD 79 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhc-cCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHC-CCeEEEEcCCCc
Confidence 6899999543 234444443322 457799999999952 11 13455566666532 457999999999
Q ss_pred cccchh---ccC---chhHHHH---------hhCC-----Ccchhh---------HhhHhhccCcchhhhhhhhccCCCc
Q psy248 128 SRQITQ---VYG---FYDECQT---------KYGN-----SNAWKY---------CCKVFDFLTIAAVSAFCDLVWSDPA 178 (283)
Q Consensus 128 ~~~~~~---~~g---f~~e~~~---------~~g~-----~~~~~~---------~~~~f~~LPlaai~~~~dllWsdP~ 178 (283)
...-.. ..| +.++... ..|+ ...|.. +..+|..||......+...+++.+.
T Consensus 80 ~~~~~~~~~~~gi~~l~~~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~r~~~~~~~~~~l~~~~r~~l~~~~~~~s~ 159 (231)
T TIGR01854 80 FLIGKRFAREAGMTLLPDPSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKVHQPWLQRLFLHLPLAVRVKLARKIRAESR 159 (231)
T ss_pred hhhhHHHHHHCCCEEECCCEEEEECCEEEEEEcCccccCCCHHHHHHHHHHhCHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 743210 011 0000000 0111 112221 2345556666544344444554322
Q ss_pred CCCCcccCCCCCceecChHHHHHHHHhcCceEEEeeeeeeeccceEeeCCeEEEEEcCCCCCccCCCeEEEEEEeCCC
Q psy248 179 EVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFNSVD 256 (283)
Q Consensus 179 ~~~~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~~y~~~~~N~aavl~i~~~~ 256 (283)
..... .+. .-....++.+++.+++.+.+++|.||.+.+.-.....++.-.+-.+-++.. ..+.++.+++++
T Consensus 160 ~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~i~GHtH~~~~~~~~~~~~~~~~~~lgdW~----~~~~~~~~~~~g 230 (231)
T TIGR01854 160 ADKQM--KSQ-DIMDVNPAEVAAVMRRYGVDRLIHGHTHRPAIHPLQADGQPATRIVLGDWY----RQGSILRVDADG 230 (231)
T ss_pred HhcCC--Ccc-hhhCCCHHHHHHHHHHcCCCEEEECCccCcceeecccCCCccEEEEECCCc----cCCeEEEEcCCC
Confidence 11110 000 011235677888899999999999999986545443333223444445542 235677777654
No 47
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=98.36 E-value=5.1e-06 Score=68.23 Aligned_cols=116 Identities=19% Similarity=0.186 Sum_probs=69.4
Q ss_pred EEEEcCCCCCHH----------HHHHHHHhcCCCCCCeEEEeCCccCCCCCc-H-HHHHHHHHhhhcCCCcEEEeCCCcc
Q psy248 60 LYKESDVFFNFY----------DLEQLFRTGGQVPDTNYIFMGDFVDRGYYS-L-ETLTRLLTLKARWPHRITLLRGNHE 127 (283)
Q Consensus 60 i~VvGDiHG~~~----------~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s-~-e~l~~l~~lk~~~P~~v~llrGNHE 127 (283)
|+.++|+|=... .|.++++.....+.+.++++||+++.|... . +...++..++... .++++++||||
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~GNHD 79 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQRGLPEEFEEAREFLDALPAPL-EPVLVVPGNHD 79 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCCCCHHHHHHHHHHHHHccccC-CcEEEeCCCCe
Confidence 467888883221 112244444444567899999999988742 2 2233344443221 37999999999
Q ss_pred cccchhccCchhHHHHhhCCCcchhhHhhHhhccCcchhhhhhhhccCCCcCC-CCcccCCCCCceecChHHHHHHHHhc
Q psy248 128 SRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAVSAFCDLVWSDPAEV-ETWTVSPRGAGWLFGAKVTHEFIHIN 206 (283)
Q Consensus 128 ~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~f~~LPlaai~~~~dllWsdP~~~-~~~~~~~rg~g~~fg~~~~~~fl~~~ 206 (283)
. + -+++-.|... ..+.... . +.+.+.+.+++.
T Consensus 80 ~----------------------------------i-------v~~Hhp~~~~~~~~~~~~-----~-~~~~~~~~l~~~ 112 (144)
T cd07400 80 V----------------------------------I-------VVLHHPLVPPPGSGRERL-----L-DAGDALKLLAEA 112 (144)
T ss_pred E----------------------------------E-------EEecCCCCCCCccccccC-----C-CHHHHHHHHHHc
Confidence 7 0 1122222211 1111111 1 677888999999
Q ss_pred CceEEEeeeeeeeccce
Q psy248 207 HLKLICRAHQLVHEGYK 223 (283)
Q Consensus 207 ~l~~iIRgHq~v~~G~~ 223 (283)
++++++.||.+....+.
T Consensus 113 ~~~~~l~GH~H~~~~~~ 129 (144)
T cd07400 113 GVDLVLHGHKHVPYVGN 129 (144)
T ss_pred CCCEEEECCCCCcCeee
Confidence 99999999999865554
No 48
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=98.26 E-value=3.2e-06 Score=68.02 Aligned_cols=109 Identities=43% Similarity=0.682 Sum_probs=88.7
Q ss_pred chhccCchhHHHHhhCCCcchhh---HhhHhhccCcchh--------------------------------------hhh
Q psy248 131 ITQVYGFYDECQTKYGNSNAWKY---CCKVFDFLTIAAV--------------------------------------SAF 169 (283)
Q Consensus 131 ~~~~~gf~~e~~~~~g~~~~~~~---~~~~f~~LPlaai--------------------------------------~~~ 169 (283)
++..+|+.+++..+++....|.. +.++|+.||++++ +..
T Consensus 3 l~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~ 82 (155)
T COG0639 3 LTALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDRLLDIIEVLDRLRACEVPHAGHT 82 (155)
T ss_pred hhhhhchhHHhhhhcCCceeeeeccchhhHHHhhhHHHHhcCCceeeecCCCCcchhhhHHHHHHHhhhhcccCCCcccc
Confidence 45567788888888876446666 9999999999983 334
Q ss_pred hhhccCCCcC--CCCcccCCCCCceecChHHHHHHHHhcCceEEEeeeeeeeccceEeeCCeEEEEEcCCCCC
Q psy248 170 CDLVWSDPAE--VETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYC 240 (283)
Q Consensus 170 ~dllWsdP~~--~~~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~~y~ 240 (283)
.+.+|++|.. ...|.++++|.+..+ .+.+..|+..+..+.+.|+|+.++.++...+.+..+|.|++++|+
T Consensus 83 ~~~~~~~~~~~~~~~w~~~~~g~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~lt~~~~~~~~ 154 (155)
T COG0639 83 HDLLWSDPDGGDRRIWNPGPRGVPRDG-GDVTAVFGIVHTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYC 154 (155)
T ss_pred ccccCCCCCCCcccccccCCCCCCccc-cchhhHHhhhcccceEEEEeEEEecCceEEeCCCeeeEEeccccc
Confidence 4569998885 678999999998776 778888998888888999999999999888875799999999986
No 49
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.19 E-value=1.1e-05 Score=66.17 Aligned_cols=107 Identities=21% Similarity=0.165 Sum_probs=68.9
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccchhccCchhH
Q psy248 61 YKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQITQVYGFYDE 140 (283)
Q Consensus 61 ~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e 140 (283)
.|++|.||..+.+.++... ..+.+.++++||+. .+++..+..++ +..++.++||||...+
T Consensus 1 ~viSDtH~~~~~~~~~~~~--~~~~d~ii~~GD~~------~~~~~~~~~~~---~~~~~~V~GN~D~~Il--------- 60 (129)
T cd07403 1 LVISDTESPALYSPEIKVR--LEGVDLILSAGDLP------KEYLEYLVTML---NVPVYYVHGNHDVDIL--------- 60 (129)
T ss_pred CeeccccCccccchHHHhh--CCCCCEEEECCCCC------hHHHHHHHHHc---CCCEEEEeCCCccCEE---------
Confidence 3899999998777776664 35567899999973 34555555541 2358899999991110
Q ss_pred HHHhhCCCcchhhHhhHhhccCcchhhhhhhhccCCCcCCCCcccCCCCCceecChHHHHHHHHhcCceEEEeeeeeeec
Q psy248 141 CQTKYGNSNAWKYCCKVFDFLTIAAVSAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHE 220 (283)
Q Consensus 141 ~~~~~g~~~~~~~~~~~f~~LPlaai~~~~dllWsdP~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v~~ 220 (283)
+++..|..... .. ....-|.+.+.+++++.+.++++-||.+.+.
T Consensus 61 -------------------------------v~H~pp~~~~~---~~--~~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~ 104 (129)
T cd07403 61 -------------------------------LTHAPPAGIGD---GE--DFAHRGFEAFLDFIDRFRPKLFIHGHTHLNY 104 (129)
T ss_pred -------------------------------EECCCCCcCcC---cc--cccccCHHHHHHHHHHHCCcEEEEcCcCCCc
Confidence 01111110000 00 0112367888899999999999999999877
Q ss_pred cce
Q psy248 221 GYK 223 (283)
Q Consensus 221 G~~ 223 (283)
.+.
T Consensus 105 ~~~ 107 (129)
T cd07403 105 GYQ 107 (129)
T ss_pred Ccc
Confidence 665
No 50
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=98.14 E-value=4.7e-06 Score=73.23 Aligned_cols=71 Identities=25% Similarity=0.282 Sum_probs=52.2
Q ss_pred CCEEEEcCCCCCHH----HHHHHHHhcCCCCCCeEEEeCCccCCCCCcH-HHHHHHHHhhhcCCCcEEEeCCCccccc
Q psy248 58 NPLYKESDVFFNFY----DLEQLFRTGGQVPDTNYIFMGDFVDRGYYSL-ETLTRLLTLKARWPHRITLLRGNHESRQ 130 (283)
Q Consensus 58 ~~i~VvGDiHG~~~----~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~-e~l~~l~~lk~~~P~~v~llrGNHE~~~ 130 (283)
.++.+++|+|+... .+.++++.+.....+.+++.||++|.+.... ++..++..+. .+..++++.||||...
T Consensus 2 ~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~~~~~~~l~~l~--~~~~v~~v~GNHD~~~ 77 (223)
T cd07385 2 LRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVDVLELLLELLKKLK--APLGVYAVLGNHDYYS 77 (223)
T ss_pred CEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcchhhHHHHHHHhccC--CCCCEEEECCCccccc
Confidence 47899999998743 6677777665555577889999999987664 4555554443 3457999999999854
No 51
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=98.13 E-value=8.7e-06 Score=74.78 Aligned_cols=71 Identities=14% Similarity=0.054 Sum_probs=51.9
Q ss_pred CCCEEEEcCCCCC----HHHHHHHHHhcCCCCCCeEEEeCCccCCC--CCcHHHHHHHHHhhhcCCCcEEEeCCCcccc
Q psy248 57 CNPLYKESDVFFN----FYDLEQLFRTGGQVPDTNYIFMGDFVDRG--YYSLETLTRLLTLKARWPHRITLLRGNHESR 129 (283)
Q Consensus 57 ~~~i~VvGDiHG~----~~~L~~ll~~~~~~~~~~~vfLGD~vDrG--~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~ 129 (283)
+.+|.+++|+|.. ...+.++++.....+.+-+++.||++|++ ...-++...+..|+.. ..++.+.||||..
T Consensus 49 ~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~~--~pv~~V~GNHD~~ 125 (271)
T PRK11340 49 PFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMPLNFSAFSDVLSPLAEC--APTFACFGNHDRP 125 (271)
T ss_pred CcEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCCccccHHHHHHHHHHHhhc--CCEEEecCCCCcc
Confidence 3689999999976 55577777766555567899999999954 2333455666666653 3599999999974
No 52
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=98.01 E-value=0.00051 Score=62.96 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=47.2
Q ss_pred CCEEEEcCCC-C-----------CHHHHHHHHHhcCC--CCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeC
Q psy248 58 NPLYKESDVF-F-----------NFYDLEQLFRTGGQ--VPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLR 123 (283)
Q Consensus 58 ~~i~VvGDiH-G-----------~~~~L~~ll~~~~~--~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llr 123 (283)
.+++.++|+| . ....|.++++.+.. +..+-+|+.||+++.|. .+-+..+.+.-.+.+.+++++.
T Consensus 15 ~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~--~~~~~~~~~~l~~l~~Pv~~v~ 92 (275)
T PRK11148 15 VRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS--SEAYQHFAEGIAPLRKPCVWLP 92 (275)
T ss_pred EEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC--HHHHHHHHHHHhhcCCcEEEeC
Confidence 4789999999 1 13556777766532 23467889999999874 3333333333333456899999
Q ss_pred CCcccc
Q psy248 124 GNHESR 129 (283)
Q Consensus 124 GNHE~~ 129 (283)
||||..
T Consensus 93 GNHD~~ 98 (275)
T PRK11148 93 GNHDFQ 98 (275)
T ss_pred CCCCCh
Confidence 999974
No 53
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=98.00 E-value=1.4e-05 Score=71.71 Aligned_cols=68 Identities=22% Similarity=0.188 Sum_probs=48.9
Q ss_pred CEEEEcCCCCCH------HHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccc
Q psy248 59 PLYKESDVFFNF------YDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESR 129 (283)
Q Consensus 59 ~i~VvGDiHG~~------~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~ 129 (283)
+|.+++|+|+++ ..+.++++.+...+.+-+|+.||++++.+.+.+.+..+.++ .+..+++++||||..
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNHD~~ 74 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNHDML 74 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCCCCC
Confidence 478999999753 22455666554455677999999999876666665555443 345799999999974
No 54
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=97.91 E-value=0.0008 Score=60.95 Aligned_cols=71 Identities=15% Similarity=0.111 Sum_probs=43.3
Q ss_pred CEEEEcCCCCCH----------------HHHHHHHHhcCCC--CCCeEEEeCCccCCCCCcH---HHHHHHHH-hhh-cC
Q psy248 59 PLYKESDVFFNF----------------YDLEQLFRTGGQV--PDTNYIFMGDFVDRGYYSL---ETLTRLLT-LKA-RW 115 (283)
Q Consensus 59 ~i~VvGDiHG~~----------------~~L~~ll~~~~~~--~~~~~vfLGD~vDrG~~s~---e~l~~l~~-lk~-~~ 115 (283)
++++++|+|-.. ..|.++++.+... ..+.++++||+++.|...- +.+..+.. ++. ..
T Consensus 6 ~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (262)
T cd07395 6 YFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSLLDP 85 (262)
T ss_pred EEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhhccC
Confidence 567888888663 1244555555332 4466889999999887531 11222222 221 12
Q ss_pred CCcEEEeCCCcccc
Q psy248 116 PHRITLLRGNHESR 129 (283)
Q Consensus 116 P~~v~llrGNHE~~ 129 (283)
+-+++.++||||..
T Consensus 86 ~vp~~~i~GNHD~~ 99 (262)
T cd07395 86 DIPLVCVCGNHDVG 99 (262)
T ss_pred CCcEEEeCCCCCCC
Confidence 45799999999974
No 55
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=97.90 E-value=9.2e-05 Score=62.63 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=54.7
Q ss_pred CCCCeEEEeCCccCCCCCc-HHH----HHHHHHhhhcC-CCcEEEeCCCcccccchhccCchhHHHHhhCCCcchhhHhh
Q psy248 83 VPDTNYIFMGDFVDRGYYS-LET----LTRLLTLKARW-PHRITLLRGNHESRQITQVYGFYDECQTKYGNSNAWKYCCK 156 (283)
Q Consensus 83 ~~~~~~vfLGD~vDrG~~s-~e~----l~~l~~lk~~~-P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~ 156 (283)
...+.+|++||++|.+... -+. +..+.++.... +.++++++||||..... ....+...+| .+
T Consensus 37 ~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~~~~---~~~~~~~~~~---------~~ 104 (156)
T cd08165 37 LQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIGFHY---EMTTYKLERF---------EK 104 (156)
T ss_pred cCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcCCCC---ccCHHHHHHH---------HH
Confidence 3457899999999987642 222 22233222222 34799999999974321 1122222222 11
Q ss_pred HhhccCcchhhhhhhhccCCCcCCCCcccCCCCCceecChHHHHHHHHhcCceEEEeeeeeeeccc
Q psy248 157 VFDFLTIAAVSAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGY 222 (283)
Q Consensus 157 ~f~~LPlaai~~~~dllWsdP~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~ 222 (283)
.| ..+.+.....++++.+..+++-||.+-..+.
T Consensus 105 ~~---------------------------------~~l~H~p~~~~~~~~~~~~~l~GH~H~~~~~ 137 (156)
T cd08165 105 VF---------------------------------ILLQHFPLYRLLQWLKPRLVLSGHTHSFCEV 137 (156)
T ss_pred He---------------------------------eeeeCChHHHHHHhhCCCEEEEcccCCCcee
Confidence 11 2344444455777888889999999863333
No 56
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=97.89 E-value=0.00029 Score=60.90 Aligned_cols=164 Identities=14% Similarity=0.009 Sum_probs=92.5
Q ss_pred CCEEEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccchhccCc
Q psy248 58 NPLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQITQVYGF 137 (283)
Q Consensus 58 ~~i~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~~~~gf 137 (283)
+++.|++|.||...+..+..+.....+.+-+|.+||++...... .+ ......+++.++||.|...... .+
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d~vih~GD~~~~~~~~-----~l---~~~~~~~i~~V~GN~D~~~~~~--~~ 71 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDSTSPFTLD-----AL---EGGLAAKLIAVRGNCDGEVDQE--EL 71 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCCEEEECCCcCCccchH-----Hh---hcccccceEEEEccCCCccccc--cC
Confidence 57899999999997666666666566677899999999754321 11 1102358999999998854320 00
Q ss_pred hhHHHHhhCCCcchhhHhhHhhccCcchhhhhhhhccCCCcCCCCcccCCCCCceecChHHHHHHHHhcCceEEEeeeee
Q psy248 138 YDECQTKYGNSNAWKYCCKVFDFLTIAAVSAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQL 217 (283)
Q Consensus 138 ~~e~~~~~g~~~~~~~~~~~f~~LPlaai~~~~dllWsdP~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~ 217 (283)
.++...+.+. .-.-++ .++.- ........++.+.+..+.+.+|.||++
T Consensus 72 p~~~~~~~~g--------------------~ki~l~-------HGh~~-----~~~~~~~~l~~la~~~~~Dvli~GHTH 119 (172)
T COG0622 72 PEELVLEVGG--------------------VKIFLT-------HGHLY-----FVKTDLSLLEYLAKELGADVLIFGHTH 119 (172)
T ss_pred ChhHeEEECC--------------------EEEEEE-------CCCcc-----ccccCHHHHHHHHHhcCCCEEEECCCC
Confidence 0110000000 000011 11100 012357888899999999999999999
Q ss_pred eeccceEeeCC-eEEEEEcCCCCCccCCCeEEEEEEe-CCCceeeEEEecCC
Q psy248 218 VHEGYKYMFDG-NLVTIWSAPNYCYRCGNIASILKFN-SVDNRTPALFQAVP 267 (283)
Q Consensus 218 v~~G~~~~~~~-~~iTifSa~~y~~~~~N~aavl~i~-~~~~~~~~~~~~~~ 267 (283)
.+.=++. ++ .++.==|.+.+- .++.+++++++ ++.++....++...
T Consensus 120 ~p~~~~~--~~i~~vNPGS~s~pr--~~~~~sy~il~~~~~~~~~~~~~~~~ 167 (172)
T COG0622 120 KPVAEKV--GGILLVNPGSVSGPR--GGNPASYAILDVDNLEVEVLFLERDR 167 (172)
T ss_pred cccEEEE--CCEEEEcCCCcCCCC--CCCCcEEEEEEcCCCEEEEEEeeccc
Confidence 8633322 22 111111333332 23555666664 34667666665443
No 57
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.87 E-value=4.1e-05 Score=69.99 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=50.1
Q ss_pred CEEEEcCCC-CC------------HHHHHHHHHhcCCCCCCeEEEeCCccCCCCC-cHHHHHHHHHhhhcCCCcEEEeCC
Q psy248 59 PLYKESDVF-FN------------FYDLEQLFRTGGQVPDTNYIFMGDFVDRGYY-SLETLTRLLTLKARWPHRITLLRG 124 (283)
Q Consensus 59 ~i~VvGDiH-G~------------~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~-s~e~l~~l~~lk~~~P~~v~llrG 124 (283)
++.+++|+| +. ...+.++++.+.....+-+|++||+++.|.. +.+-+..+.+.-...+-+++.+.|
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v~G 81 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHVLG 81 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEecC
Confidence 678999999 22 3556666766654446679999999998873 334444444433334458999999
Q ss_pred Ccccccc
Q psy248 125 NHESRQI 131 (283)
Q Consensus 125 NHE~~~~ 131 (283)
|||....
T Consensus 82 NHD~~~~ 88 (267)
T cd07396 82 NHDLYNP 88 (267)
T ss_pred ccccccc
Confidence 9998654
No 58
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=97.85 E-value=0.00027 Score=61.58 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=44.6
Q ss_pred CEEEEcCCCCCHH-----------HHHHHHH-hcCCCCCCeEEEeCCccCCCCC---cHHHHHHHHHhhhcCCCcEEEeC
Q psy248 59 PLYKESDVFFNFY-----------DLEQLFR-TGGQVPDTNYIFMGDFVDRGYY---SLETLTRLLTLKARWPHRITLLR 123 (283)
Q Consensus 59 ~i~VvGDiHG~~~-----------~L~~ll~-~~~~~~~~~~vfLGD~vDrG~~---s~e~l~~l~~lk~~~P~~v~llr 123 (283)
++.+++|+|-... ...+.++ .+.....+.+|++||+++.+.. +.+.+..++.......-.++++.
T Consensus 4 ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~ 83 (199)
T cd07383 4 KILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAATF 83 (199)
T ss_pred EEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 6899999996322 1122232 2333345679999999997765 35556555544333445799999
Q ss_pred CCcc
Q psy248 124 GNHE 127 (283)
Q Consensus 124 GNHE 127 (283)
||||
T Consensus 84 GNHD 87 (199)
T cd07383 84 GNHD 87 (199)
T ss_pred ccCC
Confidence 9999
No 59
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.82 E-value=5.3e-05 Score=69.03 Aligned_cols=73 Identities=22% Similarity=0.237 Sum_probs=48.9
Q ss_pred CCEEEEcCCCC-C-----------HHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHH----HHHHHhhhcCCCcEEE
Q psy248 58 NPLYKESDVFF-N-----------FYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETL----TRLLTLKARWPHRITL 121 (283)
Q Consensus 58 ~~i~VvGDiHG-~-----------~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l----~~l~~lk~~~P~~v~l 121 (283)
++++.++|+|- . ...|.++++.+.....+.+++.||++|+..-+.+.. .++..|+...|-.+++
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~ 80 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVV 80 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 36889999993 2 234455555544445677999999999886554433 3444454433467999
Q ss_pred eCCCccccc
Q psy248 122 LRGNHESRQ 130 (283)
Q Consensus 122 lrGNHE~~~ 130 (283)
+.||||...
T Consensus 81 i~GNHD~~~ 89 (253)
T TIGR00619 81 ISGNHDSAQ 89 (253)
T ss_pred EccCCCChh
Confidence 999999853
No 60
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=97.72 E-value=0.00013 Score=64.86 Aligned_cols=69 Identities=30% Similarity=0.390 Sum_probs=45.6
Q ss_pred CEEEEcCCCCC------------HHHHHHHHHhcCCC--CCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCC
Q psy248 59 PLYKESDVFFN------------FYDLEQLFRTGGQV--PDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRG 124 (283)
Q Consensus 59 ~i~VvGDiHG~------------~~~L~~ll~~~~~~--~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrG 124 (283)
++++++|+|=. ...+.++++.+... +.+-+|++||+++.|.. +....+.+...+.+-+++.++|
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~l~~~~~p~~~v~G 78 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSP--ESYERLRELLAALPIPVYLLPG 78 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCH--HHHHHHHHHHhhcCCCEEEeCC
Confidence 57899999944 34566777665443 55679999999998753 2222222222223557999999
Q ss_pred Ccccc
Q psy248 125 NHESR 129 (283)
Q Consensus 125 NHE~~ 129 (283)
|||..
T Consensus 79 NHD~~ 83 (240)
T cd07402 79 NHDDR 83 (240)
T ss_pred CCCCH
Confidence 99974
No 61
>PHA02546 47 endonuclease subunit; Provisional
Probab=97.71 E-value=8e-05 Score=70.71 Aligned_cols=73 Identities=18% Similarity=0.109 Sum_probs=48.4
Q ss_pred CCEEEEcCCC-C-----------CHHHHHHHHHhcCCCCCCeEEEeCCccCCC-CCcHHHHHHHHH----hhhcCCCcEE
Q psy248 58 NPLYKESDVF-F-----------NFYDLEQLFRTGGQVPDTNYIFMGDFVDRG-YYSLETLTRLLT----LKARWPHRIT 120 (283)
Q Consensus 58 ~~i~VvGDiH-G-----------~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG-~~s~e~l~~l~~----lk~~~P~~v~ 120 (283)
++++.++|+| | +...|.++++.+.....+.+++.||++|+. +.+.+++.++.. .-...+-+++
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~ 80 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLH 80 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 3788999999 4 223455555555445567899999999985 445555444432 2123456899
Q ss_pred EeCCCccccc
Q psy248 121 LLRGNHESRQ 130 (283)
Q Consensus 121 llrGNHE~~~ 130 (283)
+|.||||...
T Consensus 81 ~I~GNHD~~~ 90 (340)
T PHA02546 81 VLVGNHDMYY 90 (340)
T ss_pred EEccCCCccc
Confidence 9999999753
No 62
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=97.63 E-value=0.00013 Score=63.77 Aligned_cols=74 Identities=19% Similarity=0.175 Sum_probs=49.1
Q ss_pred CEEEEcCCC-CCH--------------HHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcC---CCcEE
Q psy248 59 PLYKESDVF-FNF--------------YDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARW---PHRIT 120 (283)
Q Consensus 59 ~i~VvGDiH-G~~--------------~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~---P~~v~ 120 (283)
+++.++|+| |.. ..|.++++.+.....+.+|+.||++|....+.+.+..+...-.+. ...++
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVF 80 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 578899999 322 235666666555556779999999998875554444433322222 45799
Q ss_pred EeCCCcccccch
Q psy248 121 LLRGNHESRQIT 132 (283)
Q Consensus 121 llrGNHE~~~~~ 132 (283)
++.||||.....
T Consensus 81 ~~~GNHD~~~~~ 92 (223)
T cd00840 81 IIAGNHDSPSRL 92 (223)
T ss_pred EecCCCCCcccc
Confidence 999999986553
No 63
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=97.60 E-value=0.00017 Score=66.36 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=46.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhc---CCCCCCeEEEeCCccCCCC-CcHHHHH------HHHHh------hhcCCCcEEEeC
Q psy248 60 LYKESDVFFNFYDLEQLFRTG---GQVPDTNYIFMGDFVDRGY-YSLETLT------RLLTL------KARWPHRITLLR 123 (283)
Q Consensus 60 i~VvGDiHG~~~~L~~ll~~~---~~~~~~~~vfLGD~vDrG~-~s~e~l~------~l~~l------k~~~P~~v~llr 123 (283)
|+|+||+||+++.+.+.++.. ...+.+-+|.+||+-..+. ...+.+. -+..+ ....|-.+++|.
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~ 80 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIG 80 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEEC
Confidence 589999999999887644432 2345677999999975543 3333321 11111 233577789999
Q ss_pred CCccccc
Q psy248 124 GNHESRQ 130 (283)
Q Consensus 124 GNHE~~~ 130 (283)
||||...
T Consensus 81 GNHE~~~ 87 (262)
T cd00844 81 GNHEASN 87 (262)
T ss_pred CCCCCHH
Confidence 9999743
No 64
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=97.49 E-value=0.00096 Score=57.30 Aligned_cols=49 Identities=20% Similarity=0.292 Sum_probs=31.2
Q ss_pred CCCCCeEEEeCCccCCCCCc--HH---HHHHHHHhhhc-----CCCcEEEeCCCccccc
Q psy248 82 QVPDTNYIFMGDFVDRGYYS--LE---TLTRLLTLKAR-----WPHRITLLRGNHESRQ 130 (283)
Q Consensus 82 ~~~~~~~vfLGD~vDrG~~s--~e---~l~~l~~lk~~-----~P~~v~llrGNHE~~~ 130 (283)
..+.+.+|++||++|.+... .+ .+..+.++... .+..+++++||||...
T Consensus 43 ~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 43 RLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred hcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 34457899999999988743 22 23333332211 1457999999999853
No 65
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=97.46 E-value=0.00041 Score=62.35 Aligned_cols=69 Identities=16% Similarity=0.042 Sum_probs=43.3
Q ss_pred CCEEEEcCCC-CCHHHH----------------HHHHHhcCCCCCCeEEEeCCccCCCCCc---HHHHHHHHHhhhcCCC
Q psy248 58 NPLYKESDVF-FNFYDL----------------EQLFRTGGQVPDTNYIFMGDFVDRGYYS---LETLTRLLTLKARWPH 117 (283)
Q Consensus 58 ~~i~VvGDiH-G~~~~L----------------~~ll~~~~~~~~~~~vfLGD~vDrG~~s---~e~l~~l~~lk~~~P~ 117 (283)
.+..||+|+| |.-..+ .++.+.....+.+.+|++||+++..... -++..++..+ ..
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~----~~ 90 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEVT----FR 90 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHhc----CC
Confidence 5789999999 543322 2233333334457899999999765542 2223333332 24
Q ss_pred cEEEeCCCccccc
Q psy248 118 RITLLRGNHESRQ 130 (283)
Q Consensus 118 ~v~llrGNHE~~~ 130 (283)
.+++++||||...
T Consensus 91 ~v~~V~GNHD~~~ 103 (225)
T TIGR00024 91 DLILIRGNHDALI 103 (225)
T ss_pred cEEEECCCCCCcc
Confidence 7999999999753
No 66
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.45 E-value=0.00027 Score=60.25 Aligned_cols=66 Identities=33% Similarity=0.427 Sum_probs=42.9
Q ss_pred EEEcCCCCCHHHHH---------------HHHHhcC--CCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeC
Q psy248 61 YKESDVFFNFYDLE---------------QLFRTGG--QVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLR 123 (283)
Q Consensus 61 ~VvGDiHG~~~~L~---------------~ll~~~~--~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llr 123 (283)
++++|+|=...... .+++... ..+.+.+|++||+++++..+.. +..+.++ +..+++++
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v~ 76 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLIK 76 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEEe
Confidence 67888886554321 2233221 2345789999999999986544 4444333 45799999
Q ss_pred CCcccccc
Q psy248 124 GNHESRQI 131 (283)
Q Consensus 124 GNHE~~~~ 131 (283)
||||....
T Consensus 77 GNHD~~~~ 84 (168)
T cd07390 77 GNHDSSLE 84 (168)
T ss_pred CCCCchhh
Confidence 99997544
No 67
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=97.39 E-value=0.00053 Score=66.82 Aligned_cols=73 Identities=14% Similarity=0.187 Sum_probs=56.2
Q ss_pred CCEEEEcCCCCC------------HHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhc-----------
Q psy248 58 NPLYKESDVFFN------------FYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKAR----------- 114 (283)
Q Consensus 58 ~~i~VvGDiHG~------------~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~----------- 114 (283)
.+|.+++|+|-. +..|.++++.+.....+-+|+.||++|+..-|.+++..++.+-.+
T Consensus 4 mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~~~~ 83 (405)
T TIGR00583 4 IRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPCELE 83 (405)
T ss_pred eEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCccchh
Confidence 589999999943 456677777776666778999999999999898888665543322
Q ss_pred -------------------------CCCcEEEeCCCccccc
Q psy248 115 -------------------------WPHRITLLRGNHESRQ 130 (283)
Q Consensus 115 -------------------------~P~~v~llrGNHE~~~ 130 (283)
..-.|+.+.||||...
T Consensus 84 ~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 84 FLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred hccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 2348999999999965
No 68
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.32 E-value=0.0005 Score=58.72 Aligned_cols=57 Identities=21% Similarity=0.199 Sum_probs=34.2
Q ss_pred HHHHHHhcCCCCCCeEEEeCCccCCCCCcH-HHHHHH-HHhhhcCCCcEEEeCCCcccc
Q psy248 73 LEQLFRTGGQVPDTNYIFMGDFVDRGYYSL-ETLTRL-LTLKARWPHRITLLRGNHESR 129 (283)
Q Consensus 73 L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~-e~l~~l-~~lk~~~P~~v~llrGNHE~~ 129 (283)
+.++.+.+...+.+.+|++||+++...... +....+ .......+-++++++||||..
T Consensus 30 ~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 30 LERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred HHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCccc
Confidence 344444444445678999999998654322 222211 112223455899999999974
No 69
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=97.32 E-value=0.00055 Score=61.36 Aligned_cols=44 Identities=7% Similarity=-0.079 Sum_probs=29.7
Q ss_pred ChHHHHHHHHhcCceEEEeeeeeeeccce---EeeCCeEEEEEcCCCCC
Q psy248 195 GAKVTHEFIHINHLKLICRAHQLVHEGYK---YMFDGNLVTIWSAPNYC 240 (283)
Q Consensus 195 g~~~~~~fl~~~~l~~iIRgHq~v~~G~~---~~~~~~~iTifSa~~y~ 240 (283)
+...+.+.+++.++++++-||.+...-.. ...++ ++.+++|+=|
T Consensus 181 ~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~g--i~~~~~~~~~ 227 (232)
T cd07393 181 DDSPISKLIEEYGVDICVYGHLHGVGRDRAINGERGG--IRYQLVSADY 227 (232)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcccccccceECC--EEEEEEcchh
Confidence 45567788888999999999998643322 12445 5666666533
No 70
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.28 E-value=0.00068 Score=61.15 Aligned_cols=181 Identities=15% Similarity=0.138 Sum_probs=100.2
Q ss_pred EEcCCCCC------HHHHHHHHHhcCCCCCCeEEEeCCccCC--CCC-----cHHHHHHHHHhhhcCCCcEEEeCCCccc
Q psy248 62 KESDVFFN------FYDLEQLFRTGGQVPDTNYIFMGDFVDR--GYY-----SLETLTRLLTLKARWPHRITLLRGNHES 128 (283)
Q Consensus 62 VvGDiHG~------~~~L~~ll~~~~~~~~~~~vfLGD~vDr--G~~-----s~e~l~~l~~lk~~~P~~v~llrGNHE~ 128 (283)
.|+|+|=. -+.|.+.++... +..+.+++|||++|- |.. -.+|...|..+. +...+++.+.||||.
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a-~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a-~~G~~v~~i~GN~Df 79 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEA-AQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLA-RKGTRVYYIHGNHDF 79 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhcc-ccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHH-hcCCeEEEecCchHH
Confidence 57888854 233445555432 355789999999962 221 234555554443 355789999999994
Q ss_pred ccchhc----cC-c---hhHH-HHhhCC--------C--------------cchhhHhhHhhccCcchhhhhhhhccCCC
Q psy248 129 RQITQV----YG-F---YDEC-QTKYGN--------S--------------NAWKYCCKVFDFLTIAAVSAFCDLVWSDP 177 (283)
Q Consensus 129 ~~~~~~----~g-f---~~e~-~~~~g~--------~--------------~~~~~~~~~f~~LPlaai~~~~dllWsdP 177 (283)
.+... .| + .+++ ..-||. . .=|.....+|-.+|+.+..-+..=+|+..
T Consensus 80 -ll~~~f~~~~g~~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~~~y~~~r~~~~~~~~~~lflnl~l~~R~ri~~k~r~~s 158 (237)
T COG2908 80 -LLGKRFAQEAGGMTLLPDPIVLDLYGKRILLAHGDTFCTDDRAYQWFRYKVHWAWLQLLFLNLPLRVRRRIAYKIRSLS 158 (237)
T ss_pred -HHHHHHHhhcCceEEcCcceeeeecCcEEEEEeCCcccchHHHHHHHHHHcccHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 33222 11 0 0111 111221 0 11234566778888885433444456554
Q ss_pred cCCCCcccCCCCCc---eecChHHHHHHHHhcCceEEEeeeeeeeccceEeeCCeEEEEEcCCCCCccCCCeEEEEEEeC
Q psy248 178 AEVETWTVSPRGAG---WLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFNS 254 (283)
Q Consensus 178 ~~~~~~~~~~rg~g---~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~~y~~~~~N~aavl~i~~ 254 (283)
.|.+...... ....++.+.+-+++++++.+|.||.+.+..-...--.++.+ + .....++++++++
T Consensus 159 ----~~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~i~~~~yi~l----G----dW~~~~s~~~v~~ 226 (237)
T COG2908 159 ----SWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHNIPGITYINL----G----DWVSEGSILEVDD 226 (237)
T ss_pred ----HHhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhccCCCceEEec----C----cchhcceEEEEec
Confidence 2222211111 12457788888999999999999999876665432111111 1 1225678999966
Q ss_pred CCc
Q psy248 255 VDN 257 (283)
Q Consensus 255 ~~~ 257 (283)
...
T Consensus 227 ~~~ 229 (237)
T COG2908 227 GGL 229 (237)
T ss_pred CcE
Confidence 544
No 71
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=97.27 E-value=0.0012 Score=59.45 Aligned_cols=73 Identities=23% Similarity=0.358 Sum_probs=51.7
Q ss_pred CEEEEcCCCCC------HHHHHHHHHhcCCCCCCeEEEeCCccCCCC-CcHHHHHHHHHhhhcCCCcEEEeCCCcccccc
Q psy248 59 PLYKESDVFFN------FYDLEQLFRTGGQVPDTNYIFMGDFVDRGY-YSLETLTRLLTLKARWPHRITLLRGNHESRQI 131 (283)
Q Consensus 59 ~i~VvGDiHG~------~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~-~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~ 131 (283)
+++.|+|+|-. ...+..+++.+...+.+-+|+.||+++.|. .+.+-+..++. +...|..+++++||||.+..
T Consensus 2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~~~~~~~~~~~~l~-~~~~~~~~~~vpGNHD~~~~ 80 (301)
T COG1409 2 RIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDGEPEEYRRLKELLA-RLELPAPVIVVPGNHDARVV 80 (301)
T ss_pred eEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCCCCHHHHHHHHHHHh-hccCCCceEeeCCCCcCCch
Confidence 67889999987 334556667777666688999999999963 22332222222 23667889999999998766
Q ss_pred h
Q psy248 132 T 132 (283)
Q Consensus 132 ~ 132 (283)
+
T Consensus 81 ~ 81 (301)
T COG1409 81 N 81 (301)
T ss_pred H
Confidence 4
No 72
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=97.26 E-value=0.025 Score=50.81 Aligned_cols=192 Identities=16% Similarity=0.176 Sum_probs=112.4
Q ss_pred CCCEEEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCcc--CCCCCcHHHHH-HHHHhhhcCCCcEEEeCCCcccccchh
Q psy248 57 CNPLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFV--DRGYYSLETLT-RLLTLKARWPHRITLLRGNHESRQITQ 133 (283)
Q Consensus 57 ~~~i~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~v--DrG~~s~e~l~-~l~~lk~~~P~~v~llrGNHE~~~~~~ 133 (283)
.+++..+.|+||....+.++++..+....+-+++.||+. +.|+.-.-.-. .+..++ ....+++.++||-|...+-.
T Consensus 3 ~mkil~vtDlHg~~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~-~~~~~v~avpGNcD~~~v~~ 81 (226)
T COG2129 3 KMKILAVTDLHGSEDSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEELNKLEALK-ELGIPVLAVPGNCDPPEVID 81 (226)
T ss_pred cceEEEEeccccchHHHHHHHHHHhhccCCEEEEecceehhhcCchHHHHhhhHHHHHH-hcCCeEEEEcCCCChHHHHH
Confidence 358899999999999999999888766677889999999 87763321111 123332 23358999999998766521
Q ss_pred c-----------------cCchh---------HHHHhhCCCcchhhHhhHhhccCcchhhhh-hhhccCCCcCCCCcccC
Q psy248 134 V-----------------YGFYD---------ECQTKYGNSNAWKYCCKVFDFLTIAAVSAF-CDLVWSDPAEVETWTVS 186 (283)
Q Consensus 134 ~-----------------~gf~~---------e~~~~~g~~~~~~~~~~~f~~LPlaai~~~-~dllWsdP~~~~~~~~~ 186 (283)
. ++|.. .-...|++++++.......+..= ... .-++++-|-....- .
T Consensus 82 ~l~~~~~~v~~~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~----~~~~Il~~HaPP~gt~~d--~ 155 (226)
T COG2129 82 VLKNAGVNVHGRVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKAD----NPVNILLTHAPPYGTLLD--T 155 (226)
T ss_pred HHHhcccccccceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhccc----CcceEEEecCCCCCcccc--C
Confidence 1 10000 00001111122222221111110 000 12355556542211 1
Q ss_pred CCCCceecChHHHHHHHHhcCceEEEeeeeeeeccceEeeCCeEEEEEcCCCCCccCCCeEEEEEEeCCCceeeEEE
Q psy248 187 PRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALF 263 (283)
Q Consensus 187 ~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~~y~~~~~N~aavl~i~~~~~~~~~~~ 263 (283)
+-| -.--|.++++++.++.+-.+.|.||=+...|.... | =||+-.|.-.+ .-..|++.++++ .++..+|
T Consensus 156 ~~g-~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~i--G--~TivVNPG~~~--~g~yA~i~l~~~-~Vk~~~~ 224 (226)
T COG2129 156 PSG-YVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKI--G--NTIVVNPGPLG--EGRYALIELEKE-VVKLEQF 224 (226)
T ss_pred CCC-ccccchHHHHHHHHHhCCceEEEeeeccccccccc--C--CeEEECCCCcc--CceEEEEEecCc-EEEEEEe
Confidence 223 12358999999999999999999998887788653 2 25666665432 235788888554 6665555
No 73
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=97.23 E-value=0.0021 Score=54.27 Aligned_cols=116 Identities=18% Similarity=0.190 Sum_probs=77.5
Q ss_pred EEEcCCCCCHHHHHHHHHhcCC--CCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccchhccCch
Q psy248 61 YKESDVFFNFYDLEQLFRTGGQ--VPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQITQVYGFY 138 (283)
Q Consensus 61 ~VvGDiHG~~~~L~~ll~~~~~--~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~~~~gf~ 138 (283)
.|+||+||+++.+.+-++.... .+-+-++++||+..-...+ +-+...+.=....|-..+++-||||
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~-~~~~~y~~g~~~~pipTyf~ggn~~----------- 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDEDD-EELEAYKDGSKKVPIPTYFLGGNNP----------- 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcccCCeeEEEEecCccCCccch-hhHHHHhcCCccCCCCEEEECCCCC-----------
Confidence 4899999999999876665322 2446688999999765554 4455555556678889999999998
Q ss_pred hHHHHhhCCCcchhhHhhHhhccCcchhhhhhhhccCC--CcCCCCcccCC-CCCceecChHHHHHHHHhcCceEEEeee
Q psy248 139 DECQTKYGNSNAWKYCCKVFDFLTIAAVSAFCDLVWSD--PAEVETWTVSP-RGAGWLFGAKVTHEFIHINHLKLICRAH 215 (283)
Q Consensus 139 ~e~~~~~g~~~~~~~~~~~f~~LPlaai~~~~dllWsd--P~~~~~~~~~~-rg~g~~fg~~~~~~fl~~~~l~~iIRgH 215 (283)
+ .|+|-+. |..+......+ -+.+..-|...+.+++++..=++.+.||
T Consensus 69 -------~-----------------------~DILlTh~wP~gi~~~~~~~~~~~~~~~GS~~i~~l~~~lkPrYhf~gh 118 (150)
T cd07380 69 -------G-----------------------VDILLTSEWPKGISKLSKVPFEETLLICGSDLIAELAKKLKPRYHFAGL 118 (150)
T ss_pred -------C-----------------------CCEEECCCCchhhhhhCCCcccccccCCCCHHHHHHHHHcCCCeEeecC
Confidence 1 1333322 21121111100 0122345899999999999999999999
Q ss_pred eee
Q psy248 216 QLV 218 (283)
Q Consensus 216 q~v 218 (283)
..+
T Consensus 119 ~~~ 121 (150)
T cd07380 119 EGV 121 (150)
T ss_pred CCc
Confidence 864
No 74
>KOG0376|consensus
Probab=97.20 E-value=2.4e-05 Score=76.43 Aligned_cols=179 Identities=13% Similarity=-0.096 Sum_probs=126.0
Q ss_pred CEEEEcCCCCCHHHHHHHHHhcCCCCCCe-EEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccchhccCc
Q psy248 59 PLYKESDVFFNFYDLEQLFRTGGQVPDTN-YIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQITQVYGF 137 (283)
Q Consensus 59 ~i~VvGDiHG~~~~L~~ll~~~~~~~~~~-~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~~~~gf 137 (283)
-.+.++|.||.+.|+.++++.- |...+ |++-|++++++....+.+..+...+...|+...+.|++||+-.+...++|
T Consensus 47 a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~f 124 (476)
T KOG0376|consen 47 AHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKF 124 (476)
T ss_pred hheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhh
Confidence 4578999999999999999864 44444 99999999999999999999999999999999999999999999888899
Q ss_pred hhHHHHhhCCC--cchhhHhhHhhccCcchh-------------------------------------------------
Q psy248 138 YDECQTKYGNS--NAWKYCCKVFDFLTIAAV------------------------------------------------- 166 (283)
Q Consensus 138 ~~e~~~~~g~~--~~~~~~~~~f~~LPlaai------------------------------------------------- 166 (283)
..++...+++. -+...+...+.- |++..
T Consensus 125 e~ai~~~~~d~~s~~~~~~~~~~~~-~i~~~y~g~~le~~kvt~e~vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~ 203 (476)
T KOG0376|consen 125 EKAILTPEGDKKSVVEMKIDEEDMD-LIESDYSGPVLEDHKVTLEFVKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLP 203 (476)
T ss_pred hhcccCCccCCcccccccccccccc-ccccccCCcccccchhhHHHHHHHHHhhhcccccccccceeeHHHHhhHHhcCC
Confidence 88877777541 111111111100 01111
Q ss_pred -----hhhhhhccCCCcCCC-CcccCCCCCceecChHHHHHHHHhcCceEEEeeeeee------------eccceEee--
Q psy248 167 -----SAFCDLVWSDPAEVE-TWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLV------------HEGYKYMF-- 226 (283)
Q Consensus 167 -----~~~~dllWsdP~~~~-~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v------------~~G~~~~~-- 226 (283)
..-.+..|+++.+.. .+-...++.+...+++.+..|+...+..-+++.+.-+ ..+|....
T Consensus 204 ~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~ 283 (476)
T KOG0376|consen 204 SLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNH 283 (476)
T ss_pred cceEeecCCCceEEecCCccccccchhhhHhhcCCCCCcccccccCceeeecccceeeeeeehhhcccCCcceeeccCCc
Confidence 112346777776633 3444556666667788888888888888888877543 12222211
Q ss_pred -CCeEEEEEcCCCCC
Q psy248 227 -DGNLVTIWSAPNYC 240 (283)
Q Consensus 227 -~~~~iTifSa~~y~ 240 (283)
.+.++++|+++.++
T Consensus 284 Es~~m~~iy~f~~e~ 298 (476)
T KOG0376|consen 284 ESDNMNKIYGFEGEV 298 (476)
T ss_pred cchHHHHHhCCCcch
Confidence 23588999998876
No 75
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=97.17 E-value=0.0026 Score=56.07 Aligned_cols=106 Identities=15% Similarity=0.228 Sum_probs=64.5
Q ss_pred CCCeEEEeCCccCCCCCc--HHHHHHHHHhhhcCC----CcEEEeCCCcccccchhccCchhHHHHhhCCCcchhhHhhH
Q psy248 84 PDTNYIFMGDFVDRGYYS--LETLTRLLTLKARWP----HRITLLRGNHESRQITQVYGFYDECQTKYGNSNAWKYCCKV 157 (283)
Q Consensus 84 ~~~~~vfLGD~vDrG~~s--~e~l~~l~~lk~~~P----~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~~~~~~~~~~~ 157 (283)
..+-++|+||++|.|+.+ .|....+..++..++ ..++.|.||||--... .....+..++|-. .| =+
T Consensus 42 ~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~--~~~~~~~v~RF~~--~F----i~ 113 (195)
T cd08166 42 QPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEE--EDPIESKIRRFEK--YF----IM 113 (195)
T ss_pred CCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCC--CCcCHHHHHHHHH--hh----ee
Confidence 457799999999999854 346666666654322 4788999999964221 1112444445532 11 22
Q ss_pred hhccCcchhhhhhhhccCCCcCCCCcccCCCCCceecChHHHHHHHHhcCceEEEeeeeeeeccceEe
Q psy248 158 FDFLTIAAVSAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYM 225 (283)
Q Consensus 158 f~~LPlaai~~~~dllWsdP~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~ 225 (283)
++++|+ +. | +..++.+...+....+|+-||.+...=|...
T Consensus 114 lsH~P~-----~~---~--------------------~~~~~~~~~~~~~p~~Ifs~H~H~s~~~~~~ 153 (195)
T cd08166 114 LSHVPL-----LA---E--------------------GGQALKHVVTDLDPDLIFSAHRHKSSIFMYD 153 (195)
T ss_pred eecccc-----cc---c--------------------ccHHHHHHHHhcCceEEEEcCccceeeEEee
Confidence 333333 11 1 1226677778889999999999976555443
No 76
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=97.16 E-value=0.00075 Score=58.92 Aligned_cols=28 Identities=4% Similarity=-0.151 Sum_probs=22.2
Q ss_pred ChHHHHHHHHhcCceEEEeeeeeeeccc
Q psy248 195 GAKVTHEFIHINHLKLICRAHQLVHEGY 222 (283)
Q Consensus 195 g~~~~~~fl~~~~l~~iIRgHq~v~~G~ 222 (283)
....+.+.++..+++++|.||.+.+.-.
T Consensus 177 ~~~~~~~~~~~~~~~~~i~GH~H~~~~~ 204 (217)
T cd07398 177 FEEAVARLARRKGVDGVICGHTHRPALH 204 (217)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCCeE
Confidence 4566777788999999999999876433
No 77
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=97.11 E-value=0.001 Score=64.77 Aligned_cols=84 Identities=19% Similarity=0.213 Sum_probs=51.5
Q ss_pred CEEEEcCCCCC--H------HH----HHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHH----HHHHHhhhcCCCcEEEe
Q psy248 59 PLYKESDVFFN--F------YD----LEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETL----TRLLTLKARWPHRITLL 122 (283)
Q Consensus 59 ~i~VvGDiHG~--~------~~----L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l----~~l~~lk~~~P~~v~ll 122 (283)
+++.++|+|-. + .+ |.++.+.+.....+.+|+.||++|++..+.+.. .++..|+. .+-.++++
T Consensus 2 kilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~-~~~~v~~I 80 (407)
T PRK10966 2 RILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQ-TGCQLVVL 80 (407)
T ss_pred EEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHh-cCCcEEEE
Confidence 68899999932 1 11 234444444455677999999999986554332 23344442 23579999
Q ss_pred CCCcccccchhccCchhHHHHhhC
Q psy248 123 RGNHESRQITQVYGFYDECQTKYG 146 (283)
Q Consensus 123 rGNHE~~~~~~~~gf~~e~~~~~g 146 (283)
.||||...- ..+..++....|
T Consensus 81 ~GNHD~~~~---l~~~~~~l~~~g 101 (407)
T PRK10966 81 AGNHDSVAT---LNESRDLLAFLN 101 (407)
T ss_pred cCCCCChhh---hhhHHHHHHHCC
Confidence 999998542 223445444444
No 78
>PRK04036 DNA polymerase II small subunit; Validated
Probab=97.04 E-value=0.0019 Score=64.71 Aligned_cols=73 Identities=22% Similarity=0.157 Sum_probs=44.4
Q ss_pred cCCCEEEEcCCC-CCH----HHHHHHHHhcC-C--------CCCCeEEEeCCccCC-CCCc---------------HHHH
Q psy248 56 CCNPLYKESDVF-FNF----YDLEQLFRTGG-Q--------VPDTNYIFMGDFVDR-GYYS---------------LETL 105 (283)
Q Consensus 56 ~~~~i~VvGDiH-G~~----~~L~~ll~~~~-~--------~~~~~~vfLGD~vDr-G~~s---------------~e~l 105 (283)
.+..+++++|+| |.- ..+..+++.+. . ...+.+|++||++|. |... -++.
T Consensus 242 ~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~ 321 (504)
T PRK04036 242 EKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAA 321 (504)
T ss_pred CccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHH
Confidence 346789999999 653 22334444332 2 223579999999995 2211 1344
Q ss_pred HHHHHhhhcCCCcEEEeCCCccccc
Q psy248 106 TRLLTLKARWPHRITLLRGNHESRQ 130 (283)
Q Consensus 106 ~~l~~lk~~~P~~v~llrGNHE~~~ 130 (283)
.+|..+. ..-+|++++||||...
T Consensus 322 ~~L~~L~--~~i~V~~ipGNHD~~~ 344 (504)
T PRK04036 322 EYLKQIP--EDIKIIISPGNHDAVR 344 (504)
T ss_pred HHHHhhh--cCCeEEEecCCCcchh
Confidence 4454443 2347999999999754
No 79
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.03 E-value=0.0018 Score=58.91 Aligned_cols=72 Identities=15% Similarity=0.070 Sum_probs=43.0
Q ss_pred EEEEcCCCCCHH------HH-HHHHHhcCCCCCCeEEEeCCccCCCCCc-------H----HHHHHHHHhhhcCCCcEEE
Q psy248 60 LYKESDVFFNFY------DL-EQLFRTGGQVPDTNYIFMGDFVDRGYYS-------L----ETLTRLLTLKARWPHRITL 121 (283)
Q Consensus 60 i~VvGDiHG~~~------~L-~~ll~~~~~~~~~~~vfLGD~vDrG~~s-------~----e~l~~l~~lk~~~P~~v~l 121 (283)
++.++|+|-... .. ..+++.+.....+-+|++||++|++... . +.+..+..+....+..++.
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 81 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFD 81 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEE
Confidence 467899996322 11 2234444444556799999999986521 1 2222223322333578999
Q ss_pred eCCCcccccc
Q psy248 122 LRGNHESRQI 131 (283)
Q Consensus 122 lrGNHE~~~~ 131 (283)
++||||....
T Consensus 82 v~GNHD~~~~ 91 (256)
T cd07401 82 IRGNHDLFNI 91 (256)
T ss_pred eCCCCCcCCC
Confidence 9999998533
No 80
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=96.94 E-value=0.0016 Score=58.57 Aligned_cols=67 Identities=25% Similarity=0.211 Sum_probs=38.6
Q ss_pred EEEcCCC--CCH---HHHHHHHHhc-CCC----CCCeEEEeCCccCCCCC------------cH----HHHHHHHHhhhc
Q psy248 61 YKESDVF--FNF---YDLEQLFRTG-GQV----PDTNYIFMGDFVDRGYY------------SL----ETLTRLLTLKAR 114 (283)
Q Consensus 61 ~VvGDiH--G~~---~~L~~ll~~~-~~~----~~~~~vfLGD~vDrG~~------------s~----e~l~~l~~lk~~ 114 (283)
++++|+| +.. ..+..+++.+ +.. ..+.+|++||++|+... .. ++..++.+|.
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-- 79 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVP-- 79 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcc--
Confidence 6799999 332 2223333332 221 23679999999997320 01 1223333332
Q ss_pred CCCcEEEeCCCcccc
Q psy248 115 WPHRITLLRGNHESR 129 (283)
Q Consensus 115 ~P~~v~llrGNHE~~ 129 (283)
..-+|+++.||||..
T Consensus 80 ~~~~v~~ipGNHD~~ 94 (243)
T cd07386 80 SHIKIIIIPGNHDAV 94 (243)
T ss_pred cCCeEEEeCCCCCcc
Confidence 234799999999975
No 81
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=96.86 E-value=0.0013 Score=60.28 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=40.9
Q ss_pred CCEEEEcCCCCC----HHHHHHHHHhcCCCCCCeEEEeCCccCCC-CCc---HH-HHHHHHHhhhcCCCcEEEeCCCccc
Q psy248 58 NPLYKESDVFFN----FYDLEQLFRTGGQVPDTNYIFMGDFVDRG-YYS---LE-TLTRLLTLKARWPHRITLLRGNHES 128 (283)
Q Consensus 58 ~~i~VvGDiHG~----~~~L~~ll~~~~~~~~~~~vfLGD~vDrG-~~s---~e-~l~~l~~lk~~~P~~v~llrGNHE~ 128 (283)
-+++|+||.|.. ...+.++.+. ....+-++++||+++-+ ..+ -+ .+..+..+.. .-.++.++||||.
T Consensus 5 ~~f~v~gD~~~~~~~~~~~~~~l~~~--~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~--~~P~~~~~GNHD~ 80 (294)
T cd00839 5 FKFAVFGDMGQNTNNSTNTLDHLEKE--LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLAS--YVPYMVTPGNHEA 80 (294)
T ss_pred EEEEEEEECCCCCCCcHHHHHHHHhc--cCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHh--cCCcEEcCccccc
Confidence 378999999952 2233333332 23446688999999543 322 12 2222222222 2368999999998
Q ss_pred ccc
Q psy248 129 RQI 131 (283)
Q Consensus 129 ~~~ 131 (283)
...
T Consensus 81 ~~~ 83 (294)
T cd00839 81 DYN 83 (294)
T ss_pred ccC
Confidence 654
No 82
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=96.76 E-value=0.0055 Score=62.08 Aligned_cols=69 Identities=20% Similarity=0.243 Sum_probs=48.7
Q ss_pred ChHHHHHHHHhcCce----EEEeeeeeee--ccceEe-eCCeEEEE---EcCCCCCccCCCeEEEEEEeCCCceeeEEEe
Q psy248 195 GAKVTHEFIHINHLK----LICRAHQLVH--EGYKYM-FDGNLVTI---WSAPNYCYRCGNIASILKFNSVDNRTPALFQ 264 (283)
Q Consensus 195 g~~~~~~fl~~~~l~----~iIRgHq~v~--~G~~~~-~~~~~iTi---fSa~~y~~~~~N~aavl~i~~~~~~~~~~~~ 264 (283)
.++..++.|+..|++ .||-||.+|. +|-... ++||++.| ||.+ |....+ -|++-.|..+-.+.....+
T Consensus 507 ~e~~c~~IL~EFgl~~~~~hIINGHvPVk~k~GEsPIKa~Gkl~VIDGGfskA-Yqk~TG-IAGYTLiyNS~gl~L~~H~ 584 (640)
T PF06874_consen 507 DEEICDKILEEFGLDPERGHIINGHVPVKVKKGESPIKANGKLIVIDGGFSKA-YQKTTG-IAGYTLIYNSYGLQLVAHQ 584 (640)
T ss_pred CHHHHHHHHHHhCCCCCCCeEECCccccccCCCCCCccCCCEEEEEcChhhhh-hccccC-ccceEEEecCCcceeccCC
Confidence 456778889999998 9999999986 676654 68999988 5544 554433 4566666565555555555
Q ss_pred c
Q psy248 265 A 265 (283)
Q Consensus 265 ~ 265 (283)
|
T Consensus 585 p 585 (640)
T PF06874_consen 585 P 585 (640)
T ss_pred C
Confidence 4
No 83
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=96.74 E-value=0.02 Score=52.47 Aligned_cols=33 Identities=3% Similarity=0.097 Sum_probs=27.3
Q ss_pred ecChHHHHHHHHhcCceEEEeeeeeeeccceEeeC
Q psy248 193 LFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFD 227 (283)
Q Consensus 193 ~fg~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~ 227 (283)
+-+++.+++.|++.+-.+|+-||++ ++++..+.
T Consensus 202 ~l~~~~s~~il~~~~P~~vfsGhdH--~~C~~~h~ 234 (257)
T cd08163 202 LLEPSLSEVILKAVQPVIAFSGDDH--DYCEVVHE 234 (257)
T ss_pred ecCHHHHHHHHHhhCCcEEEecCCC--ccceeEcc
Confidence 3578999999999999999999998 56666543
No 84
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=96.58 E-value=0.01 Score=50.51 Aligned_cols=49 Identities=22% Similarity=0.181 Sum_probs=34.0
Q ss_pred CCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccchhcc
Q psy248 83 VPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQITQVY 135 (283)
Q Consensus 83 ~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~~~~ 135 (283)
.|++.+.+|||+.-.--..-+...++.+| |+++++++||||.-......
T Consensus 44 ~p~D~lwhLGDl~~~~n~~~~a~~IlerL----nGrkhlv~GNhDk~~~~~~~ 92 (186)
T COG4186 44 GPDDVLWHLGDLSSGANRERAAGLILERL----NGRKHLVPGNHDKCHPMYRH 92 (186)
T ss_pred CccceEEEecccccccchhhHHHHHHHHc----CCcEEEeeCCCCCCcccccc
Confidence 46788999999985444444444444444 78999999999986544433
No 85
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=96.39 E-value=0.0074 Score=53.13 Aligned_cols=64 Identities=20% Similarity=0.302 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHhcCC-CCCCeEEEeCCccCCCCCcHHH-HHHHHHhhhcC---------------------CCcEEE
Q psy248 65 DVFFNFYDLEQLFRTGGQ-VPDTNYIFMGDFVDRGYYSLET-LTRLLTLKARW---------------------PHRITL 121 (283)
Q Consensus 65 DiHG~~~~L~~ll~~~~~-~~~~~~vfLGD~vDrG~~s~e~-l~~l~~lk~~~---------------------P~~v~l 121 (283)
|++|+-.-|.++++.+-. -..+.++||||++|.|.-+-+- -..+.+.+..+ ...+++
T Consensus 24 d~~~~D~YL~~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~ 103 (193)
T cd08164 24 DLFGNDYFLGHIVSMMQFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLIN 103 (193)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEE
Confidence 668888888888877543 3446789999999998644332 33444444432 246789
Q ss_pred eCCCccc
Q psy248 122 LRGNHES 128 (283)
Q Consensus 122 lrGNHE~ 128 (283)
|.||||-
T Consensus 104 V~GNHDI 110 (193)
T cd08164 104 IAGNHDV 110 (193)
T ss_pred ECCcccC
Confidence 9999998
No 86
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=96.21 E-value=0.012 Score=54.72 Aligned_cols=73 Identities=19% Similarity=0.086 Sum_probs=49.6
Q ss_pred CCEEEEcCCCCCHHH--HHHHHHhcCCCCCCeEEEeCCccCC-CC-CcHHHHHHHHHhhhcCCCcEEEeCCCcccccch
Q psy248 58 NPLYKESDVFFNFYD--LEQLFRTGGQVPDTNYIFMGDFVDR-GY-YSLETLTRLLTLKARWPHRITLLRGNHESRQIT 132 (283)
Q Consensus 58 ~~i~VvGDiHG~~~~--L~~ll~~~~~~~~~~~vfLGD~vDr-G~-~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~ 132 (283)
-+|+-++|+|-.... ..+.+........+-+++.|||+|+ .+ ..-.+...|..|+... .++.+-||||...-.
T Consensus 45 ~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~DlivltGD~~~~~~~~~~~~~~~~L~~L~~~~--gv~av~GNHd~~~~~ 121 (284)
T COG1408 45 LKIVQLSDLHSLPFREEKLALLIAIANELPDLIVLTGDYVDGDRPPGVAALALFLAKLKAPL--GVFAVLGNHDYGVDR 121 (284)
T ss_pred eEEEEeehhhhchhhHHHHHHHHHHHhcCCCEEEEEeeeecCCCCCCHHHHHHHHHhhhccC--CEEEEeccccccccc
Confidence 468999999988766 2223333222223778899999995 44 4455666677676544 899999999876543
No 87
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=96.11 E-value=0.018 Score=55.46 Aligned_cols=74 Identities=19% Similarity=0.237 Sum_probs=51.6
Q ss_pred CEEEEcCCCCC-------------HHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcC---CCcEEEe
Q psy248 59 PLYKESDVFFN-------------FYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARW---PHRITLL 122 (283)
Q Consensus 59 ~i~VvGDiHG~-------------~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~---P~~v~ll 122 (283)
++..++|+|=. ..+|..+++.+.....+-+|.-||+.|++.-|.+++..+...-.+. .-.|++|
T Consensus 2 kilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I 81 (390)
T COG0420 2 KILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVI 81 (390)
T ss_pred eeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEe
Confidence 67788888854 2334444555544455778999999999988877777655533332 2489999
Q ss_pred CCCcccccch
Q psy248 123 RGNHESRQIT 132 (283)
Q Consensus 123 rGNHE~~~~~ 132 (283)
.||||...-.
T Consensus 82 ~GNHD~~~~~ 91 (390)
T COG0420 82 AGNHDSPSRL 91 (390)
T ss_pred cCCCCchhcc
Confidence 9999987654
No 88
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=96.06 E-value=0.013 Score=52.63 Aligned_cols=65 Identities=22% Similarity=0.213 Sum_probs=42.6
Q ss_pred CEEEEcCCCCCH---------HHHHHHHHhcCCC-CCCeEEEeCCccCCCCCcH-----HHHHHHHHhhhcCCCcEEEeC
Q psy248 59 PLYKESDVFFNF---------YDLEQLFRTGGQV-PDTNYIFMGDFVDRGYYSL-----ETLTRLLTLKARWPHRITLLR 123 (283)
Q Consensus 59 ~i~VvGDiHG~~---------~~L~~ll~~~~~~-~~~~~vfLGD~vDrG~~s~-----e~l~~l~~lk~~~P~~v~llr 123 (283)
+|+.++|+||.+ ..+.+++++.... +..-++..||+++..+.+. .++..+..+.. .+ ...
T Consensus 2 ~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~g~----d~-~~~ 76 (252)
T cd00845 2 TILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNALGY----DA-VTI 76 (252)
T ss_pred EEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHhcCC----CE-Eee
Confidence 578899999886 5556667665443 3335677899999877643 45555544421 23 445
Q ss_pred CCccc
Q psy248 124 GNHES 128 (283)
Q Consensus 124 GNHE~ 128 (283)
||||.
T Consensus 77 GNHe~ 81 (252)
T cd00845 77 GNHEF 81 (252)
T ss_pred ccccc
Confidence 99996
No 89
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=95.36 E-value=0.019 Score=51.87 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=45.6
Q ss_pred CCEEEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCc-------------------------HHHHHHHHHhh
Q psy248 58 NPLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYS-------------------------LETLTRLLTLK 112 (283)
Q Consensus 58 ~~i~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s-------------------------~e~l~~l~~lk 112 (283)
.+|..++|.||+++.|.++.+.+.....+-++|+||++-....+ .|.++-++..-
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~L 85 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFRIL 85 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHHH
Confidence 47899999999999999999887666678899999998543222 23444444444
Q ss_pred hcCCCcEEEeCCCccccc
Q psy248 113 ARWPHRITLLRGNHESRQ 130 (283)
Q Consensus 113 ~~~P~~v~llrGNHE~~~ 130 (283)
-..+-.+++|+||||...
T Consensus 86 ~~~~~p~~~vPG~~Dap~ 103 (255)
T PF14582_consen 86 GELGVPVFVVPGNMDAPE 103 (255)
T ss_dssp HCC-SEEEEE--TTS-SH
T ss_pred HhcCCcEEEecCCCCchH
Confidence 455668999999999854
No 90
>PLN02533 probable purple acid phosphatase
Probab=95.30 E-value=0.026 Score=55.39 Aligned_cols=70 Identities=16% Similarity=0.147 Sum_probs=40.4
Q ss_pred CCEEEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcH--HH-HHHHHHhhhcCCCcEEEeCCCccccc
Q psy248 58 NPLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSL--ET-LTRLLTLKARWPHRITLLRGNHESRQ 130 (283)
Q Consensus 58 ~~i~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~--e~-l~~l~~lk~~~P~~v~llrGNHE~~~ 130 (283)
-+++|+||+|-. ......++.+.....+-+++.||++.-+...- +. ..++..+... -.+..+.||||...
T Consensus 140 ~~f~v~GDlG~~-~~~~~tl~~i~~~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~--~P~m~~~GNHE~~~ 212 (427)
T PLN02533 140 IKFAVSGDLGTS-EWTKSTLEHVSKWDYDVFILPGDLSYANFYQPLWDTFGRLVQPLASQ--RPWMVTHGNHELEK 212 (427)
T ss_pred eEEEEEEeCCCC-cccHHHHHHHHhcCCCEEEEcCccccccchHHHHHHHHHHhhhHhhc--CceEEeCccccccc
Confidence 478999999532 22223344333344567889999997543321 11 1222222222 36899999999864
No 91
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=94.93 E-value=0.042 Score=50.32 Aligned_cols=65 Identities=17% Similarity=0.191 Sum_probs=38.2
Q ss_pred CEEEEcCCCCCH----------------HHHHHHHHhcCCCCCCeEEE-eCCccCCCCCc-----------HHHHHHHHH
Q psy248 59 PLYKESDVFFNF----------------YDLEQLFRTGGQVPDTNYIF-MGDFVDRGYYS-----------LETLTRLLT 110 (283)
Q Consensus 59 ~i~VvGDiHG~~----------------~~L~~ll~~~~~~~~~~~vf-LGD~vDrG~~s-----------~e~l~~l~~ 110 (283)
.|+.++|+||++ ..+..++++......+.+++ .||+++..+.+ ..++..+-.
T Consensus 2 ~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ln~ 81 (277)
T cd07410 2 RILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAMNA 81 (277)
T ss_pred eEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHHHh
Confidence 467889999986 33555666554332333333 79999866522 124444444
Q ss_pred hhhcCCCcEEEeCCCccc
Q psy248 111 LKARWPHRITLLRGNHES 128 (283)
Q Consensus 111 lk~~~P~~v~llrGNHE~ 128 (283)
+. ++ ++..||||.
T Consensus 82 ~g---~d--~~~lGNHe~ 94 (277)
T cd07410 82 LG---YD--AGTLGNHEF 94 (277)
T ss_pred cC---CC--EEeecccCc
Confidence 42 22 455699996
No 92
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=94.84 E-value=0.1 Score=47.35 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=48.7
Q ss_pred CCCEEEEcCCCCCHHHHH----------------HHHH-hcCCCCCCeEEEeCCccCCCCC-----cHHHHHHHHHhhhc
Q psy248 57 CNPLYKESDVFFNFYDLE----------------QLFR-TGGQVPDTNYIFMGDFVDRGYY-----SLETLTRLLTLKAR 114 (283)
Q Consensus 57 ~~~i~VvGDiHG~~~~L~----------------~ll~-~~~~~~~~~~vfLGD~vDrG~~-----s~e~l~~l~~lk~~ 114 (283)
..+..|+.|+|=-+..-+ +.+. .......+++|.+||.-.-.+. ..|+-.++..++.+
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~ 98 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDER 98 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhccC
Confidence 468899999996654433 2222 1222345789999999854332 34555555555443
Q ss_pred CCCcEEEeCCCcccccchhccCc
Q psy248 115 WPHRITLLRGNHESRQITQVYGF 137 (283)
Q Consensus 115 ~P~~v~llrGNHE~~~~~~~~gf 137 (283)
.++++|||||........++
T Consensus 99 ---evi~i~GNHD~~i~~~~~~~ 118 (235)
T COG1407 99 ---EVIIIRGNHDNGIEEILPGF 118 (235)
T ss_pred ---cEEEEeccCCCccccccccC
Confidence 49999999998655443333
No 93
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=94.84 E-value=0.07 Score=48.43 Aligned_cols=70 Identities=16% Similarity=0.112 Sum_probs=40.2
Q ss_pred CEEEEcCCCCC--H--HHHHHHHHh-cCCCCCCeEEEeCCcc-CCCCCc------HHHHHHHHHhhhcCCCcEEEeCCCc
Q psy248 59 PLYKESDVFFN--F--YDLEQLFRT-GGQVPDTNYIFMGDFV-DRGYYS------LETLTRLLTLKARWPHRITLLRGNH 126 (283)
Q Consensus 59 ~i~VvGDiHG~--~--~~L~~ll~~-~~~~~~~~~vfLGD~v-DrG~~s------~e~l~~l~~lk~~~P~~v~llrGNH 126 (283)
+++++||.=.. . ..+.+.+.. +...+.+-+|++||++ +-|..+ .+.+..++.. ....-.++.+.|||
T Consensus 2 ~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~-~~~~~P~~~v~GNH 80 (277)
T cd07378 2 RFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSA-PSLQVPWYLVLGNH 80 (277)
T ss_pred eEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccc-hhhcCCeEEecCCc
Confidence 57899998653 1 234443332 3334456699999997 555321 1223333221 11234799999999
Q ss_pred ccc
Q psy248 127 ESR 129 (283)
Q Consensus 127 E~~ 129 (283)
|..
T Consensus 81 D~~ 83 (277)
T cd07378 81 DYS 83 (277)
T ss_pred ccC
Confidence 986
No 94
>KOG3662|consensus
Probab=94.65 E-value=0.059 Score=52.45 Aligned_cols=58 Identities=22% Similarity=0.396 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCC-CCCeEEEeCCccCCCCCc--HHHHHHHHHhhhcCCC----cEEEeCCCccc
Q psy248 71 YDLEQLFRTGGQV-PDTNYIFMGDFVDRGYYS--LETLTRLLTLKARWPH----RITLLRGNHES 128 (283)
Q Consensus 71 ~~L~~ll~~~~~~-~~~~~vfLGD~vDrG~~s--~e~l~~l~~lk~~~P~----~v~llrGNHE~ 128 (283)
.-|.+.++..-+. ..+-++||||++|-|... -|--....+++.-+|. +++.+.||||-
T Consensus 79 ~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDI 143 (410)
T KOG3662|consen 79 WYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDI 143 (410)
T ss_pred HHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCcccc
Confidence 3445555544333 234578899999988743 4444556666666654 79999999986
No 95
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=93.25 E-value=0.11 Score=48.18 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=40.9
Q ss_pred CEEEEcCCCCCHHH--------------HHHHHHhcCCC-CCCeEEEeCCccCCCCC-c-----HHHHHHHHHhhhcCCC
Q psy248 59 PLYKESDVFFNFYD--------------LEQLFRTGGQV-PDTNYIFMGDFVDRGYY-S-----LETLTRLLTLKARWPH 117 (283)
Q Consensus 59 ~i~VvGDiHG~~~~--------------L~~ll~~~~~~-~~~~~vfLGD~vDrG~~-s-----~e~l~~l~~lk~~~P~ 117 (283)
+|+.+.|+||++.. +..+++..... +..-++..||+++..+. + ..++..+-++..
T Consensus 2 ~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g~---- 77 (288)
T cd07412 2 QILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGASPFESALLQDEPTIEALNAMGV---- 77 (288)
T ss_pred eEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccccchhhcccCCcHHHHHHhhCC----
Confidence 46789999998653 55566655433 33446668999976653 2 245555555543
Q ss_pred cEEEeCCCccc
Q psy248 118 RITLLRGNHES 128 (283)
Q Consensus 118 ~v~llrGNHE~ 128 (283)
.+ +..||||.
T Consensus 78 Da-~t~GNHef 87 (288)
T cd07412 78 DA-SAVGNHEF 87 (288)
T ss_pred ee-eeeccccc
Confidence 23 55599996
No 96
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=93.23 E-value=0.15 Score=46.29 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=39.2
Q ss_pred CEEEEcCCCCCH----------HHHHHHHHhcCCCCCCeEEEeCCccCCCCCc-----HHHHHHHHHhhhcCCCcEEEeC
Q psy248 59 PLYKESDVFFNF----------YDLEQLFRTGGQVPDTNYIFMGDFVDRGYYS-----LETLTRLLTLKARWPHRITLLR 123 (283)
Q Consensus 59 ~i~VvGDiHG~~----------~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s-----~e~l~~l~~lk~~~P~~v~llr 123 (283)
+|+-++|+||++ ..+..++++....+.+-++..||.++..+.+ ..++..+-.+.. .+ ...
T Consensus 2 ~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g~----d~-~~~ 76 (257)
T cd07408 2 TILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPISDLDKGETIIKIMNAVGY----DA-VTP 76 (257)
T ss_pred EEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhhhhcCCcHHHHHHHhcCC----cE-Ecc
Confidence 467899999985 3455566655433344566689999876533 233333333321 33 456
Q ss_pred CCccc
Q psy248 124 GNHES 128 (283)
Q Consensus 124 GNHE~ 128 (283)
||||.
T Consensus 77 GNHef 81 (257)
T cd07408 77 GNHEF 81 (257)
T ss_pred ccccc
Confidence 99996
No 97
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=93.13 E-value=0.27 Score=45.20 Aligned_cols=72 Identities=18% Similarity=0.097 Sum_probs=42.5
Q ss_pred EEEEcCCCCCH---HHHHHHHHhcCC--CCCCeEEEeCCccCCCCCcH--H------HHHHHHHhhhcCCC-cEEEeCCC
Q psy248 60 LYKESDVFFNF---YDLEQLFRTGGQ--VPDTNYIFMGDFVDRGYYSL--E------TLTRLLTLKARWPH-RITLLRGN 125 (283)
Q Consensus 60 i~VvGDiHG~~---~~L~~ll~~~~~--~~~~~~vfLGD~vDrG~~s~--e------~l~~l~~lk~~~P~-~v~llrGN 125 (283)
..-.|+-. |- ..+..+++.+.. ++.+-+|+.||+++.+.... + .-.+...++..+|+ .|+.+.||
T Consensus 40 ~~~~G~~~-CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GN 118 (296)
T cd00842 40 AGPWGDYG-CDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGN 118 (296)
T ss_pred CCCCcCcC-CCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCC
Confidence 34455553 32 344555554433 35567899999998875421 1 12223334444554 79999999
Q ss_pred cccccch
Q psy248 126 HESRQIT 132 (283)
Q Consensus 126 HE~~~~~ 132 (283)
||....+
T Consensus 119 HD~~p~~ 125 (296)
T cd00842 119 HDSYPVN 125 (296)
T ss_pred CCCCccc
Confidence 9986543
No 98
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=90.84 E-value=0.47 Score=43.21 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCC-CCCe-EEEeCCccCCCCCc-----HHHHHHHHHhhhcCCCcEEEeCCCccc
Q psy248 72 DLEQLFRTGGQV-PDTN-YIFMGDFVDRGYYS-----LETLTRLLTLKARWPHRITLLRGNHES 128 (283)
Q Consensus 72 ~L~~ll~~~~~~-~~~~-~vfLGD~vDrG~~s-----~e~l~~l~~lk~~~P~~v~llrGNHE~ 128 (283)
.+..++++.... ..+. ++..||+++..+.+ ..++..+-.+. --.+. ||||.
T Consensus 37 r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~l~~~g-----~da~~-GNHef 94 (264)
T cd07411 37 HIATLIKRIRAERNPNTLLLDGGDTWQGSGEALYTRGQAMVDALNALG-----VDAMV-GHWEF 94 (264)
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCccCCChHHhhcCChhHHHHHHhhC-----CeEEe-ccccc
Confidence 344455554332 3333 45589999876543 23444444432 12334 99996
No 99
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=90.29 E-value=0.74 Score=42.40 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=17.3
Q ss_pred ChHHHHHHHHhc-CceEEEeeeeeee
Q psy248 195 GAKVTHEFIHIN-HLKLICRAHQLVH 219 (283)
Q Consensus 195 g~~~~~~fl~~~-~l~~iIRgHq~v~ 219 (283)
|.+.-.+++++. ++++||-||++..
T Consensus 193 G~~~d~~la~~~~giD~IiggH~H~~ 218 (281)
T cd07409 193 GYEVDKEIARKVPGVDVIVGGHSHTF 218 (281)
T ss_pred CchhHHHHHHcCCCCcEEEeCCcCcc
Confidence 444344555554 8999999999874
No 100
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=89.23 E-value=0.48 Score=52.21 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=40.4
Q ss_pred CCEEEEcCCCCCH---HHHHHHHHhcCCCCCCeEEE-eCCccCCCCCc-----HHHHHHHHHhhhcCCCcEEEeCCCccc
Q psy248 58 NPLYKESDVFFNF---YDLEQLFRTGGQVPDTNYIF-MGDFVDRGYYS-----LETLTRLLTLKARWPHRITLLRGNHES 128 (283)
Q Consensus 58 ~~i~VvGDiHG~~---~~L~~ll~~~~~~~~~~~vf-LGD~vDrG~~s-----~e~l~~l~~lk~~~P~~v~llrGNHE~ 128 (283)
-.|+.++|+||++ ..+..++++......+.+++ .||+++..+.+ ...+..+-.+. --....||||.
T Consensus 661 l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~lg-----~d~~~~GNHEf 735 (1163)
T PRK09419 661 LTILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLYSNLLKGLPVLKMMKEMG-----YDASTFGNHEF 735 (1163)
T ss_pred EEEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcchhhhcCChHHHHHHhCcC-----CCEEEeccccc
Confidence 3678899999986 34444555443222333433 79999877544 24455554442 23468999996
No 101
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=87.44 E-value=1.1 Score=38.91 Aligned_cols=72 Identities=18% Similarity=0.250 Sum_probs=38.6
Q ss_pred EEEEcCCCCC-----HHHHHHHHHhcC-CCCCCeEEEeCCccCCCCCcH-------------HHHHHHHHhhhc--CCCc
Q psy248 60 LYKESDVFFN-----FYDLEQLFRTGG-QVPDTNYIFMGDFVDRGYYSL-------------ETLTRLLTLKAR--WPHR 118 (283)
Q Consensus 60 i~VvGDiHG~-----~~~L~~ll~~~~-~~~~~~~vfLGD~vDrG~~s~-------------e~l~~l~~lk~~--~P~~ 118 (283)
|++++|+|=. ++.|.++|+... ...-..+|++|+++|.-.... +.+..+...... ---+
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQ 80 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSE
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccE
Confidence 4677777755 455667777666 555567999999999632111 111111111111 1248
Q ss_pred EEEeCCCcccccc
Q psy248 119 ITLLRGNHESRQI 131 (283)
Q Consensus 119 v~llrGNHE~~~~ 131 (283)
|++++|+||....
T Consensus 81 vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 81 VVLVPGPNDPTSS 93 (209)
T ss_dssp EEEE--TTCTT-S
T ss_pred EEEeCCCcccccc
Confidence 9999999997544
No 102
>KOG3325|consensus
Probab=87.37 E-value=3.4 Score=35.22 Aligned_cols=118 Identities=19% Similarity=0.274 Sum_probs=72.5
Q ss_pred EEEEcCCCC--CHHHHHHHHHhcCCCCC-CeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccchhccC
Q psy248 60 LYKESDVFF--NFYDLEQLFRTGGQVPD-TNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQITQVYG 136 (283)
Q Consensus 60 i~VvGDiHG--~~~~L~~ll~~~~~~~~-~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~~~~g 136 (283)
+.+.||+|= .-.+|-.=|++.=.|.. .+++++|++. |-|.+++|..+. ..++++||-.|.-
T Consensus 3 vL~lgD~HiP~Ra~~Lp~KFkklLvPgki~hilctGNlc-----s~e~~dylk~l~----~dvhiVrGeFD~~------- 66 (183)
T KOG3325|consen 3 VLVLGDLHIPHRANDLPAKFKKLLVPGKIQHILCTGNLC-----SKESYDYLKTLS----SDVHIVRGEFDEN------- 66 (183)
T ss_pred EEEeccccCCccccccCHHHHhccCCCceeEEEEeCCcc-----hHHHHHHHHhhC----CCcEEEecccCcc-------
Confidence 578999984 33455555665545554 4688999974 668899988774 4799999988653
Q ss_pred chhHHHHhhCCCcchhhHhhHhhccCcchhhhhhhhccCCCcCCCCcccCCCCCceecChHHHHHHHHhcCceEEEeeee
Q psy248 137 FYDECQTKYGNSNAWKYCCKVFDFLTIAAVSAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQ 216 (283)
Q Consensus 137 f~~e~~~~~g~~~~~~~~~~~f~~LPlaai~~~~dllWsdP~~~~~~~~~~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq 216 (283)
.+|....+- .+...++ .+ ..++..-|+| ..+.+.-..+++++++++-||+
T Consensus 67 ------~~yP~~kvv----------tvGqfkI--G~-------chGhqViP~g-----d~~sL~~LaRqldvDILl~G~T 116 (183)
T KOG3325|consen 67 ------LKYPENKVV----------TVGQFKI--GL-------CHGHQVIPWG-----DPESLALLARQLDVDILLTGHT 116 (183)
T ss_pred ------ccCCccceE----------EeccEEE--Ee-------ecCcEeecCC-----CHHHHHHHHHhcCCcEEEeCCc
Confidence 222220000 0000000 00 1223333344 2567777888999999999999
Q ss_pred eeeccce
Q psy248 217 LVHEGYK 223 (283)
Q Consensus 217 ~v~~G~~ 223 (283)
+.-+-|+
T Consensus 117 h~f~Aye 123 (183)
T KOG3325|consen 117 HKFEAYE 123 (183)
T ss_pred eeEEEEE
Confidence 9766665
No 103
>KOG2863|consensus
Probab=86.35 E-value=1.2 Score=42.90 Aligned_cols=74 Identities=16% Similarity=0.217 Sum_probs=49.0
Q ss_pred CCEEEEcCCCCCHHHHHH---HHHhcCCCCCCeEEEeCCccC-CCC---CcHHH---------HHHHHHhhhcCCCcEEE
Q psy248 58 NPLYKESDVFFNFYDLEQ---LFRTGGQVPDTNYIFMGDFVD-RGY---YSLET---------LTRLLTLKARWPHRITL 121 (283)
Q Consensus 58 ~~i~VvGDiHG~~~~L~~---ll~~~~~~~~~~~vfLGD~vD-rG~---~s~e~---------l~~l~~lk~~~P~~v~l 121 (283)
++|.|-|=.||+++.+-+ ..++.|-.+-+-+++.||+=. |.. +++.+ +.--..=.+..|---++
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 478999999999999874 445556667788999999852 222 22211 11111222456777889
Q ss_pred eCCCcccccc
Q psy248 122 LRGNHESRQI 131 (283)
Q Consensus 122 lrGNHE~~~~ 131 (283)
+=||||....
T Consensus 81 IGGNHEAsny 90 (456)
T KOG2863|consen 81 IGGNHEASNY 90 (456)
T ss_pred ecCchHHHHH
Confidence 9999998643
No 104
>KOG1378|consensus
Probab=86.18 E-value=1.6 Score=43.09 Aligned_cols=34 Identities=6% Similarity=0.093 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCceEEEeeeeeeeccceEeeCCeE
Q psy248 197 KVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNL 230 (283)
Q Consensus 197 ~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~~~~ 230 (283)
..++..+-++++++.+-||.+.-+......+.++
T Consensus 322 ~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~ 355 (452)
T KOG1378|consen 322 EGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTC 355 (452)
T ss_pred HHHHHHHHHhceeEEEeccceehhccchhhccee
Confidence 4689999999999999999998776655555544
No 105
>KOG1432|consensus
Probab=86.10 E-value=1.3 Score=42.26 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=47.4
Q ss_pred CEEEEcCCCCCHH-----------------HHH--HHHHh-cCCCCCCeEEEeCCccCCCC--CcHHHHHHHHHhhhcCC
Q psy248 59 PLYKESDVFFNFY-----------------DLE--QLFRT-GGQVPDTNYIFMGDFVDRGY--YSLETLTRLLTLKARWP 116 (283)
Q Consensus 59 ~i~VvGDiHG~~~-----------------~L~--~ll~~-~~~~~~~~~vfLGD~vDrG~--~s~e~l~~l~~lk~~~P 116 (283)
+|+.+.|+|=.+. |+. ..++. +.....+-+||+||.|+--. +..++++-..+-.+.+.
T Consensus 55 KIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t~Da~~sl~kAvaP~I~~~ 134 (379)
T KOG1432|consen 55 KILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHSTQDAATSLMKAVAPAIDRK 134 (379)
T ss_pred EEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccccccHhHHHHHHHHhhhHhhcC
Confidence 6788999996665 221 11211 22234577999999998622 34455655666666676
Q ss_pred CcEEEeCCCcccccc
Q psy248 117 HRITLLRGNHESRQI 131 (283)
Q Consensus 117 ~~v~llrGNHE~~~~ 131 (283)
-....+.||||....
T Consensus 135 IPwA~~lGNHDdes~ 149 (379)
T KOG1432|consen 135 IPWAAVLGNHDDESD 149 (379)
T ss_pred CCeEEEecccccccc
Confidence 788999999987543
No 106
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=85.88 E-value=1.6 Score=40.33 Aligned_cols=67 Identities=15% Similarity=0.021 Sum_probs=47.9
Q ss_pred CCEEEEcCCCCC--HHHHHHHHHhcCCC-CCCeEEEeCCccCCC-CCcHHHHHHHHHhhhcCCCcEEEeCCCcccc
Q psy248 58 NPLYKESDVFFN--FYDLEQLFRTGGQV-PDTNYIFMGDFVDRG-YYSLETLTRLLTLKARWPHRITLLRGNHESR 129 (283)
Q Consensus 58 ~~i~VvGDiHG~--~~~L~~ll~~~~~~-~~~~~vfLGD~vDrG-~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~ 129 (283)
++|.++|||=|. ...+...|..+... +.+-+|..||...-| .-+-++...|..+-+ .++.+ |||+.-
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~Gv----DviT~-GNH~~D 71 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGV----NYITM-GNHTWF 71 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCC----CEEEc-cchhcc
Confidence 378999999999 56666777665433 235566689999766 467888888887754 45555 999763
No 107
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=84.90 E-value=2.2 Score=38.71 Aligned_cols=56 Identities=20% Similarity=0.130 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHhcCCCC-CCeEEEeCCccCCCCC-----cHHHHHHHHHhhhcCCCcEEEeCCCccc
Q psy248 68 FNFYDLEQLFRTGGQVP-DTNYIFMGDFVDRGYY-----SLETLTRLLTLKARWPHRITLLRGNHES 128 (283)
Q Consensus 68 G~~~~L~~ll~~~~~~~-~~~~vfLGD~vDrG~~-----s~e~l~~l~~lk~~~P~~v~llrGNHE~ 128 (283)
|.+.-+..++++..... ..-++..||+++.++. ...++..+-.+.. -+...||||.
T Consensus 21 gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~~-----d~~~~GNHef 82 (257)
T cd07406 21 GGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNALGV-----DLACFGNHEF 82 (257)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhcCC-----cEEeeccccc
Confidence 55677777777654433 3346668999987643 2345555555532 3457899996
No 108
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=84.01 E-value=2.7 Score=36.91 Aligned_cols=97 Identities=20% Similarity=0.241 Sum_probs=57.1
Q ss_pred CCEEEEcCCCCCHH-HHHHHHHhcCCCCCCeEEEeCCcc--CCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccchhc
Q psy248 58 NPLYKESDVFFNFY-DLEQLFRTGGQVPDTNYIFMGDFV--DRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQITQV 134 (283)
Q Consensus 58 ~~i~VvGDiHG~~~-~L~~ll~~~~~~~~~~~vfLGD~v--DrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~~~ 134 (283)
.|..|+|+=-...+ ...+-.+ .-..+++.++.-||+- =|=++..+-+.+|-+| |+.-+++|||||...-.
T Consensus 17 KpM~vFGe~W~gh~ekI~k~W~-~~v~~eDiVllpGDiSWaM~l~ea~~Dl~~i~~L----PG~K~m~rGNHDYWw~s-- 89 (230)
T COG1768 17 KPMEVFGEPWSGHHEKIKKHWR-SKVSPEDIVLLPGDISWAMRLEEAEEDLRFIGDL----PGTKYMIRGNHDYWWSS-- 89 (230)
T ss_pred CceeecCCcccCchHHHHHHHH-hcCChhhEEEecccchhheechhhhhhhhhhhcC----CCcEEEEecCCccccch--
Confidence 46667776543333 3333222 2235667777889984 2344555666666655 88999999999985432
Q ss_pred cCchhHHHHhhCCCcchhhHhhHhhccCcchh
Q psy248 135 YGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV 166 (283)
Q Consensus 135 ~gf~~e~~~~~g~~~~~~~~~~~f~~LPlaai 166 (283)
...+...+.. .....++.|..+-+|.+
T Consensus 90 ---~skl~n~lp~--~l~~~n~~f~l~n~aI~ 116 (230)
T COG1768 90 ---ISKLNNALPP--ILFYLNNGFELLNYAIV 116 (230)
T ss_pred ---HHHHHhhcCc--hHhhhccceeEeeEEEE
Confidence 2334444433 24455666776665544
No 109
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=83.12 E-value=1.9 Score=39.80 Aligned_cols=65 Identities=14% Similarity=0.036 Sum_probs=35.1
Q ss_pred CEEEEcCCCCCHHH----------HHHHHHhcCC-----CCCCeEEEeCCccCCCCC-----cHHHHHHHHHhhhcCCCc
Q psy248 59 PLYKESDVFFNFYD----------LEQLFRTGGQ-----VPDTNYIFMGDFVDRGYY-----SLETLTRLLTLKARWPHR 118 (283)
Q Consensus 59 ~i~VvGDiHG~~~~----------L~~ll~~~~~-----~~~~~~vfLGD~vDrG~~-----s~e~l~~l~~lk~~~P~~ 118 (283)
.|+-+.|+||++.. +..++++... .+..-++-.||.+.-.+. ..-++.++-.+.. .
T Consensus 2 tIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~n~~g~----D 77 (285)
T cd07405 2 TILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGY----D 77 (285)
T ss_pred EEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHHhcCcchHHHHHHhhCC----c
Confidence 36778999998633 3444544321 233335558999843222 2233444444433 3
Q ss_pred EEEeCCCccc
Q psy248 119 ITLLRGNHES 128 (283)
Q Consensus 119 v~llrGNHE~ 128 (283)
+. ..||||.
T Consensus 78 a~-~~GNHEf 86 (285)
T cd07405 78 AM-AVGNHEF 86 (285)
T ss_pred EE-eeccccc
Confidence 33 4499996
No 110
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=82.50 E-value=1.6 Score=43.65 Aligned_cols=67 Identities=18% Similarity=0.166 Sum_probs=41.4
Q ss_pred CCEEEEcCCCCCHH------------HHHH---HHHhcCCCCCCe-EEEeCCccCCCC------CcHHHHHHHHHhhhcC
Q psy248 58 NPLYKESDVFFNFY------------DLEQ---LFRTGGQVPDTN-YIFMGDFVDRGY------YSLETLTRLLTLKARW 115 (283)
Q Consensus 58 ~~i~VvGDiHG~~~------------~L~~---ll~~~~~~~~~~-~vfLGD~vDrG~------~s~e~l~~l~~lk~~~ 115 (283)
-.|+-..|+||++. -+.+ +.++........ +|=.||+++..+ .....+.++-.++..
T Consensus 27 l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~yD- 105 (517)
T COG0737 27 LTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALGYD- 105 (517)
T ss_pred EEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHHhhcCCc-
Confidence 36788999999998 3333 333332222233 444899999843 334466666666543
Q ss_pred CCcEEEeCCCcccc
Q psy248 116 PHRITLLRGNHESR 129 (283)
Q Consensus 116 P~~v~llrGNHE~~ 129 (283)
....||||.-
T Consensus 106 ----a~tiGNHEFd 115 (517)
T COG0737 106 ----AMTLGNHEFD 115 (517)
T ss_pred ----EEeecccccc
Confidence 3778999983
No 111
>KOG2476|consensus
Probab=81.39 E-value=4.9 Score=39.92 Aligned_cols=68 Identities=18% Similarity=0.115 Sum_probs=52.0
Q ss_pred CCEEEEcCCCCCHHHHHHHHHhcCCC--CCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCc
Q psy248 58 NPLYKESDVFFNFYDLEQLFRTGGQV--PDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNH 126 (283)
Q Consensus 58 ~~i~VvGDiHG~~~~L~~ll~~~~~~--~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNH 126 (283)
.+|.||||.-|++..|.+-.+.+... |-+-++++|++.+-...+-|++.+.-.- ...|-.++++-+|-
T Consensus 6 ~kILv~Gd~~Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~ykng~-~~vPiptY~~g~~~ 75 (528)
T KOG2476|consen 6 AKILVCGDVEGRFDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYKNGT-KKVPIPTYFLGDNA 75 (528)
T ss_pred ceEEEEcCccccHHHHHHHHHHHhhcCCCceEEEEecccCCCccchhHHHHHhcCC-ccCceeEEEecCCC
Confidence 68999999999999998777665442 3466889999999766667766665443 45788888888776
No 112
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=81.21 E-value=2.2 Score=39.52 Aligned_cols=66 Identities=18% Similarity=0.052 Sum_probs=36.5
Q ss_pred CEEEEcCCCCCHHH-------------HHHHHHhc----CC-CCCCeEEEeCCccCCCCCc-------HHHHHHHHHhhh
Q psy248 59 PLYKESDVFFNFYD-------------LEQLFRTG----GQ-VPDTNYIFMGDFVDRGYYS-------LETLTRLLTLKA 113 (283)
Q Consensus 59 ~i~VvGDiHG~~~~-------------L~~ll~~~----~~-~~~~~~vfLGD~vDrG~~s-------~e~l~~l~~lk~ 113 (283)
.|+-+.|+||++.. +.++.+.. .. .+..-++..||.++.-+.+ .-.+.++-.+.
T Consensus 7 tILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~mg- 85 (282)
T cd07407 7 NFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNPIFRMMP- 85 (282)
T ss_pred EEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHHHHHhcC-
Confidence 56778999998631 22332221 11 2222345589999765432 22344444443
Q ss_pred cCCCcEEEeCCCcccc
Q psy248 114 RWPHRITLLRGNHESR 129 (283)
Q Consensus 114 ~~P~~v~llrGNHE~~ 129 (283)
-=....||||.-
T Consensus 86 ----yDa~tlGNHEFd 97 (282)
T cd07407 86 ----YDLLTIGNHELY 97 (282)
T ss_pred ----CcEEeecccccC
Confidence 234788999983
No 113
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=76.35 E-value=4.7 Score=37.95 Aligned_cols=64 Identities=22% Similarity=0.199 Sum_probs=38.0
Q ss_pred EEEEcCCCCCHH------HHHHHHHhcCC-----CCCCeEEEeCCccCCCCC-------------cHHHHHHHHHhhhcC
Q psy248 60 LYKESDVFFNFY------DLEQLFRTGGQ-----VPDTNYIFMGDFVDRGYY-------------SLETLTRLLTLKARW 115 (283)
Q Consensus 60 i~VvGDiHG~~~------~L~~ll~~~~~-----~~~~~~vfLGD~vDrG~~-------------s~e~l~~l~~lk~~~ 115 (283)
|+-+.|+||++. .+..++++... .+..-++.-||.+.-++. ..-++.++-++...
T Consensus 3 IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g~D- 81 (313)
T cd08162 3 LLHTSDGESGLLAEDDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALGVQ- 81 (313)
T ss_pred EEEecccccCccccCCHHHHHHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccCCc-
Confidence 567889999963 33334444321 223345668999875442 33445555555432
Q ss_pred CCcEEEeCCCccc
Q psy248 116 PHRITLLRGNHES 128 (283)
Q Consensus 116 P~~v~llrGNHE~ 128 (283)
....||||.
T Consensus 82 ----a~tlGNHEF 90 (313)
T cd08162 82 ----AIALGNHEF 90 (313)
T ss_pred ----EEecccccc
Confidence 477899995
No 114
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=76.28 E-value=9.8 Score=35.68 Aligned_cols=73 Identities=18% Similarity=0.385 Sum_probs=47.7
Q ss_pred CCCEEEEcCCCCC----HHHHHHHHHhc-CCCC----CCeEEEeCCccCCC----CCc----HHHHHHHHHh-hhcCC--
Q psy248 57 CNPLYKESDVFFN----FYDLEQLFRTG-GQVP----DTNYIFMGDFVDRG----YYS----LETLTRLLTL-KARWP-- 116 (283)
Q Consensus 57 ~~~i~VvGDiHG~----~~~L~~ll~~~-~~~~----~~~~vfLGD~vDrG----~~s----~e~l~~l~~l-k~~~P-- 116 (283)
...++|.||+|=+ ++.|.++|+.. ...+ ..-+||+|+++.+. ..+ .|-++-|..+ ..+||
T Consensus 27 ~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~L 106 (291)
T PTZ00235 27 RHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKLI 106 (291)
T ss_pred ceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChHH
Confidence 4678999999954 55666666655 2212 34599999999663 222 3445555542 33455
Q ss_pred ---CcEEEeCCCcccc
Q psy248 117 ---HRITLLRGNHESR 129 (283)
Q Consensus 117 ---~~v~llrGNHE~~ 129 (283)
.++++++|-.|-.
T Consensus 107 ~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 107 LEHCYLIFIPGINDPC 122 (291)
T ss_pred HhcCeEEEECCCCCCC
Confidence 6899999999964
No 115
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=76.04 E-value=6 Score=38.66 Aligned_cols=72 Identities=7% Similarity=-0.066 Sum_probs=41.3
Q ss_pred CCEEEEcCCCCCHHHH---HHHHHhc-CCCCCCeEEEeCCccCCCCCcH------HHHHHHHHhhh-cCCCcEEEeCCCc
Q psy248 58 NPLYKESDVFFNFYDL---EQLFRTG-GQVPDTNYIFMGDFVDRGYYSL------ETLTRLLTLKA-RWPHRITLLRGNH 126 (283)
Q Consensus 58 ~~i~VvGDiHG~~~~L---~~ll~~~-~~~~~~~~vfLGD~vDrG~~s~------e~l~~l~~lk~-~~P~~v~llrGNH 126 (283)
-+++++||-=+-...- .+.+... ...+.+-+|-+||-++.|..|+ +.++-+..-.. .-.-+++.+.|||
T Consensus 27 l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~vLGNH 106 (394)
T PTZ00422 27 LRFASLGNWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNFPGGVDGLNDPKWKHCFENVYSEESGDMQIPFFTVLGQA 106 (394)
T ss_pred EEEEEEecCCCCchhHHHHHHHHHHHHHhCCCCEEEECCccccCCCCCccchhHHhhHhhhccCcchhhCCCeEEeCCcc
Confidence 3689999953322221 2223322 2234566888999988776654 33444442211 0112799999999
Q ss_pred ccc
Q psy248 127 ESR 129 (283)
Q Consensus 127 E~~ 129 (283)
|.+
T Consensus 107 Dy~ 109 (394)
T PTZ00422 107 DWD 109 (394)
T ss_pred ccc
Confidence 973
No 116
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=74.69 E-value=4.3 Score=42.12 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=40.3
Q ss_pred CCEEEEcCCCCCHHH----------------HHHHHHhcCCC-CCCeEEEeCCccCCCCCcH-------------HHHHH
Q psy248 58 NPLYKESDVFFNFYD----------------LEQLFRTGGQV-PDTNYIFMGDFVDRGYYSL-------------ETLTR 107 (283)
Q Consensus 58 ~~i~VvGDiHG~~~~----------------L~~ll~~~~~~-~~~~~vfLGD~vDrG~~s~-------------e~l~~ 107 (283)
-+|+-..|+||++.. +..++++.... +..-+|-.||.+...+.+- -++..
T Consensus 26 L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~llvD~GD~~qGsp~~~~~~~~~~~~g~~~p~i~a 105 (649)
T PRK09420 26 LRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAKNSVLVDNGDLIQGSPLGDYMAAKGLKAGDVHPVYKA 105 (649)
T ss_pred EEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCCCEEEEECCCcCCCchhhhhhhhccccCCCcchHHHH
Confidence 477889999999743 33344443222 3334566899998655431 24555
Q ss_pred HHHhhhcCCCcEEEeCCCccc
Q psy248 108 LLTLKARWPHRITLLRGNHES 128 (283)
Q Consensus 108 l~~lk~~~P~~v~llrGNHE~ 128 (283)
+-.|.. =....||||.
T Consensus 106 mN~lgy-----Da~tlGNHEF 121 (649)
T PRK09420 106 MNTLDY-----DVGNLGNHEF 121 (649)
T ss_pred HHhcCC-----cEEeccchhh
Confidence 555533 3477899996
No 117
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=74.24 E-value=8 Score=35.46 Aligned_cols=65 Identities=14% Similarity=0.059 Sum_probs=43.7
Q ss_pred CEEEEcCCCCCHHH--HHHHHHhcCCC-CCCeEEEeCCccCCC-CCcHHHHHHHHHhhhcCCCcEEEeCCCccc
Q psy248 59 PLYKESDVFFNFYD--LEQLFRTGGQV-PDTNYIFMGDFVDRG-YYSLETLTRLLTLKARWPHRITLLRGNHES 128 (283)
Q Consensus 59 ~i~VvGDiHG~~~~--L~~ll~~~~~~-~~~~~vfLGD~vDrG-~~s~e~l~~l~~lk~~~P~~v~llrGNHE~ 128 (283)
+|.++|||=|.-.. +.+.+...... +.+-+|-.||..--| .-+-++...|..+.. .+..+ ||||.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~~~~~~~L~~~G~----D~iTl-GNH~f 69 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGITPKIAKELLSAGV----DVITM-GNHTW 69 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCCHHHHHHHHhcCC----CEEEe-ccccc
Confidence 57899999998643 35555554322 234455689998766 367788888887755 34444 99975
No 118
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=73.39 E-value=2.9 Score=41.60 Aligned_cols=43 Identities=26% Similarity=0.465 Sum_probs=35.8
Q ss_pred CCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccch
Q psy248 85 DTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQIT 132 (283)
Q Consensus 85 ~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~ 132 (283)
.+++-.+||+-||||++-.+++.|... ..+-+--||||-..+.
T Consensus 191 VDhLHiVGDIyDRGP~pd~Imd~L~~y-----hsvDiQWGNHDilWmg 233 (648)
T COG3855 191 VDHLHIVGDIYDRGPYPDKIMDTLINY-----HSVDIQWGNHDILWMG 233 (648)
T ss_pred hhheeeecccccCCCCchHHHHHHhhc-----ccccccccCcceEEee
Confidence 467888999999999999999998877 3577888999976653
No 119
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=72.85 E-value=4.9 Score=41.52 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=38.2
Q ss_pred CEEEEcCCCCCHHH----------------HHHHHHhcCCC-CCCeEEEeCCccCCCCCcH-------------HHHHHH
Q psy248 59 PLYKESDVFFNFYD----------------LEQLFRTGGQV-PDTNYIFMGDFVDRGYYSL-------------ETLTRL 108 (283)
Q Consensus 59 ~i~VvGDiHG~~~~----------------L~~ll~~~~~~-~~~~~vfLGD~vDrG~~s~-------------e~l~~l 108 (283)
+|+-..|+||++.. +..++++.... +..-++-.||.+...+.+- -++..+
T Consensus 4 ~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p~~~~m 83 (626)
T TIGR01390 4 RIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVKNSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHPVYKAM 83 (626)
T ss_pred EEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCCCeEEEECCCcCCCccchhhhhhccccCCCcChHHHHH
Confidence 56778999999743 33445443222 2334555899998654331 234444
Q ss_pred HHhhhcCCCcEEEeCCCccc
Q psy248 109 LTLKARWPHRITLLRGNHES 128 (283)
Q Consensus 109 ~~lk~~~P~~v~llrGNHE~ 128 (283)
-.|.. =....||||.
T Consensus 84 N~lgy-----Da~tlGNHEF 98 (626)
T TIGR01390 84 NLLKY-----DVGNLGNHEF 98 (626)
T ss_pred hhcCc-----cEEecccccc
Confidence 44432 3477899995
No 120
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=71.97 E-value=4.6 Score=44.64 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=16.8
Q ss_pred HHHHHHHHh-cCceEEEeeeeeee
Q psy248 197 KVTHEFIHI-NHLKLICRAHQLVH 219 (283)
Q Consensus 197 ~~~~~fl~~-~~l~~iIRgHq~v~ 219 (283)
+++.+..++ -++++||-||++..
T Consensus 257 n~~~~la~~~~gID~Il~GHsH~~ 280 (1163)
T PRK09419 257 DSVYDLAEKTKGIDAIVAGHQHGL 280 (1163)
T ss_pred hHHHHHHHhCCCCcEEEeCCCccc
Confidence 345566645 48999999999863
No 121
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=68.86 E-value=15 Score=36.69 Aligned_cols=52 Identities=15% Similarity=0.066 Sum_probs=32.3
Q ss_pred eEEEeeeeeeeccceEeeCCeEEEEEcCCCCCccCCCeEEEEEEe-CCCceeeEEEec
Q psy248 209 KLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFN-SVDNRTPALFQA 265 (283)
Q Consensus 209 ~~iIRgHq~v~~G~~~~~~~~~iTifSa~~y~~~~~N~aavl~i~-~~~~~~~~~~~~ 265 (283)
++++.||++. .|+....+.+++..+|=+.... ..-++.|+ +.+++.+..++.
T Consensus 420 Dv~~~Ghvh~-~g~~~y~gv~~vns~T~q~qTe----fqk~vni~p~~~~v~vv~~~~ 472 (481)
T COG1311 420 DVFHTGHVHK-FGTGVYEGVNLVNSGTWQEQTE----FQKMVNINPTPGNVPVVDFDS 472 (481)
T ss_pred cEEEEccccc-cceeEEeccceEEeeeecchhc----cceEEEecCcccceeEEeccc
Confidence 5778899997 6888887877777777665542 22344443 244455555443
No 122
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=66.10 E-value=17 Score=33.46 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=31.1
Q ss_pred eEEEeeeeeeeccceEeeC--CeEEEEEcCCCCCccCCCeEEEEEEe-CCCceeeEEE
Q psy248 209 KLICRAHQLVHEGYKYMFD--GNLVTIWSAPNYCYRCGNIASILKFN-SVDNRTPALF 263 (283)
Q Consensus 209 ~~iIRgHq~v~~G~~~~~~--~~~iTifSa~~y~~~~~N~aavl~i~-~~~~~~~~~~ 263 (283)
.+.+.|||+. -|.+...+ ++-+.+.|.|.+.. .|.++.+| +++.++...|
T Consensus 205 hVyf~Gnq~~-f~t~~~~~~~~~~v~lv~vP~Fs~----t~~~vlvdl~tLe~~~v~f 257 (257)
T cd07387 205 HVYFAGNQPK-FGTKLVEGEEGQRVLLVCVPSFSK----TGTAVLVNLRTLECEPISF 257 (257)
T ss_pred CEEEeCCCcc-eeeeEEEcCCCCeEEEEEeCCcCc----CCEEEEEECCcCcEEEEeC
Confidence 4567799975 35554432 56677788899853 34444443 6777776654
No 123
>KOG0918|consensus
Probab=64.81 E-value=0.61 Score=45.33 Aligned_cols=161 Identities=8% Similarity=-0.134 Sum_probs=98.6
Q ss_pred CeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccchhccCchhHHHHhhCC---CcchhhHhhHhhccC
Q psy248 86 TNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQITQVYGFYDECQTKYGN---SNAWKYCCKVFDFLT 162 (283)
Q Consensus 86 ~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~~~~gf~~e~~~~~g~---~~~~~~~~~~f~~LP 162 (283)
-..|+++++.+++.+.++.+.+-...+..+-......+++|+.. +++.+++...-.. ..+++..++.++.++
T Consensus 49 latVdvdp~s~t~c~vI~r~~~~~~gdelhhsgwn~~ssc~~~~-----~~~R~~LVlp~l~S~riyvid~~~ep~~~~l 123 (476)
T KOG0918|consen 49 LATVDVDPSSPTYCQVIHRLPMPYLGDELHHSGWNSCSSCHGDS-----SFKRRYLVLPSLNSGRIYVIDVKTEPRKPSL 123 (476)
T ss_pred eeEEecCCCCCcceeeEEEeccCcccchhcccchhhhhhhccCc-----chhhhheeecccccCceEEEEeccCcCccce
Confidence 35899999999999999999999998888878888999999443 3344443322222 356777788888887
Q ss_pred cchh--------hhh-----------------------hhhccCCCcCCC-----CcccCCCCCceecChH--HHHHHHH
Q psy248 163 IAAV--------SAF-----------------------CDLVWSDPAEVE-----TWTVSPRGAGWLFGAK--VTHEFIH 204 (283)
Q Consensus 163 laai--------~~~-----------------------~dllWsdP~~~~-----~~~~~~rg~g~~fg~~--~~~~fl~ 204 (283)
...+ ++. ..=.|.++.+.+ .|+.. +...+||.+ ...++..
T Consensus 124 ~k~i~~~il~~~~l~~Pht~hcla~g~v~vs~lGd~~gn~kg~f~llD~~~~~k~tw~~~--~~~p~~gyDfwyqpr~~~ 201 (476)
T KOG0918|consen 124 EKTIDPDILEKTGLACPHTSHCLASGNVMVSCLGDAEGNAKGGFLLLDSDFNEKGTWEKP--GHSPLFGYDFWYQPRHNV 201 (476)
T ss_pred eeeechhhHhhcCCcCCcccccccCCCeeEEeecccccCCcCCeEEecCccceecccccC--CCccccccceeeccccce
Confidence 7777 000 001133333322 23221 122222222 2234444
Q ss_pred hcCceEEEeeeeeeeccceEeeCCeEEEEEcCCCCCccCCCeEEEEEEeCC
Q psy248 205 INHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFNSV 255 (283)
Q Consensus 205 ~~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~~y~~~~~N~aavl~i~~~ 255 (283)
....+...+.|+....+.+...++ ++.++++-|.-..++..+.+.+..+
T Consensus 202 mIstewgap~~~~~gf~~~~v~d~--lyg~~lhvy~w~~~~~~QtidL~~~ 250 (476)
T KOG0918|consen 202 MISTEWGAPNALRKGFNPADVEDG--LYGSHLHVYQWSPGELKQTIDLGDT 250 (476)
T ss_pred EEeecccCchhhhcCCChhHhhcc--ceeeeeEEEecCCccceeEEecCCC
Confidence 445566667777643333333444 7888888887777777888888665
No 124
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=64.15 E-value=9.3 Score=40.78 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=38.9
Q ss_pred CCEEEEcCCCCCHHH----------------HHHHHHhcCC-CCCCeEEEeCCccCCCCCcH--------------HHHH
Q psy248 58 NPLYKESDVFFNFYD----------------LEQLFRTGGQ-VPDTNYIFMGDFVDRGYYSL--------------ETLT 106 (283)
Q Consensus 58 ~~i~VvGDiHG~~~~----------------L~~ll~~~~~-~~~~~~vfLGD~vDrG~~s~--------------e~l~ 106 (283)
-+|+-..|+||++.. +..++++... .+..-+|-.||.+...+.+- -++.
T Consensus 116 LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P~i~ 195 (814)
T PRK11907 116 VRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHPMYA 195 (814)
T ss_pred EEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcccchhhhccccccCcchHHHH
Confidence 467889999999643 2233443322 22334566899997654321 2455
Q ss_pred HHHHhhhcCCCcEEEeCCCccc
Q psy248 107 RLLTLKARWPHRITLLRGNHES 128 (283)
Q Consensus 107 ~l~~lk~~~P~~v~llrGNHE~ 128 (283)
.+-.|.. =....||||.
T Consensus 196 amN~LGy-----DA~tLGNHEF 212 (814)
T PRK11907 196 ALEALGF-----DAGTLGNHEF 212 (814)
T ss_pred HHhccCC-----CEEEechhhc
Confidence 5555533 3477899996
No 125
>KOG3947|consensus
Probab=61.96 E-value=13 Score=34.73 Aligned_cols=66 Identities=23% Similarity=0.206 Sum_probs=43.0
Q ss_pred cCCCEEEEcCCCCCHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHH---HHHhhhcCCCcEEEeCCCcccccc
Q psy248 56 CCNPLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTR---LLTLKARWPHRITLLRGNHESRQI 131 (283)
Q Consensus 56 ~~~~i~VvGDiHG~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~---l~~lk~~~P~~v~llrGNHE~~~~ 131 (283)
-..+++.++|.|+...+.. ..+..+-++-+||+..-|. +-||..+ +-+|.- ..=++|+||||..+-
T Consensus 60 ~~~r~VcisdtH~~~~~i~------~~p~gDvlihagdfT~~g~-~~ev~~fn~~~gslph---~yKIVIaGNHELtFd 128 (305)
T KOG3947|consen 60 GYARFVCISDTHELTFDIN------DIPDGDVLIHAGDFTNLGL-PEEVIKFNEWLGSLPH---EYKIVIAGNHELTFD 128 (305)
T ss_pred CceEEEEecCcccccCccc------cCCCCceEEeccCCccccC-HHHHHhhhHHhccCcc---eeeEEEeeccceeec
Confidence 3467899999999876643 2455566788999977553 3344433 333332 245689999998544
No 126
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=61.93 E-value=16 Score=37.06 Aligned_cols=51 Identities=16% Similarity=0.058 Sum_probs=28.3
Q ss_pred HHHHHHhcCC-CCCCeEEEeCCccCCCCCc-----HHHHHHHHHhhhcCCCcEEEeCCCccc
Q psy248 73 LEQLFRTGGQ-VPDTNYIFMGDFVDRGYYS-----LETLTRLLTLKARWPHRITLLRGNHES 128 (283)
Q Consensus 73 L~~ll~~~~~-~~~~~~vfLGD~vDrG~~s-----~e~l~~l~~lk~~~P~~v~llrGNHE~ 128 (283)
+..++++... .+..-++.-||.+...+.+ ...+.++-++.. -....||||.
T Consensus 37 l~~~i~~~r~~~~n~l~ldaGD~~~gs~~~~~~~g~~~i~~~N~~g~-----Da~~lGNHEF 93 (550)
T TIGR01530 37 LNAEINKLRAESKNALVLHAGDAIIGTLYFTLFGGRADAALMNAAGF-----DFFTLGNHEF 93 (550)
T ss_pred HHHHHHHHHhhCCCeEEEECCCCCCCccchhhcCCHHHHHHHhccCC-----CEEEeccccc
Confidence 3444444322 2334466689999755432 233444444433 3578899996
No 127
>KOG2310|consensus
Probab=60.24 E-value=26 Score=35.73 Aligned_cols=155 Identities=17% Similarity=0.262 Sum_probs=87.8
Q ss_pred CCEEEEcCCCC------------CHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcC----------
Q psy248 58 NPLYKESDVFF------------NFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARW---------- 115 (283)
Q Consensus 58 ~~i~VvGDiHG------------~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~---------- 115 (283)
-+|.|..|+|= .+..+.++|..+.....+.++.=||++.-..-|.++|...+.+-.+|
T Consensus 14 irILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~~le 93 (646)
T KOG2310|consen 14 IRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPVQLE 93 (646)
T ss_pred eEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCceeeE
Confidence 47788888873 45677888887766655666677999988877776666544433221
Q ss_pred ---------------------C-----CcEEEeCCCcccccchhccCchh-----HHHHhhCC------CcchhhH-hhH
Q psy248 116 ---------------------P-----HRITLLRGNHESRQITQVYGFYD-----ECQTKYGN------SNAWKYC-CKV 157 (283)
Q Consensus 116 ---------------------P-----~~v~llrGNHE~~~~~~~~gf~~-----e~~~~~g~------~~~~~~~-~~~ 157 (283)
| -.||-|-||||+..=-..+.-.+ .+..-||. ..++... ..=
T Consensus 94 ~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG~~~lsalDIL~~~GLVNyFGk~~~id~I~vsPiLlqKG 173 (646)
T KOG2310|consen 94 ILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSGDGRLSALDILSAAGLVNYFGKVSEIDKIDVSPILLQKG 173 (646)
T ss_pred EecccceeccccccceecccCCCcceeeeeEEeecCCCCCccccccchHHHHHhcchhhhhccccCcceEEEEeeeeccC
Confidence 1 25788999999875433222111 11222232 0111111 011
Q ss_pred hhccCcchh---------hhh--hhhccCCCcC-CCCccc------C--CCCCceecChHHHHHHHHhcCceEEEeeeee
Q psy248 158 FDFLTIAAV---------SAF--CDLVWSDPAE-VETWTV------S--PRGAGWLFGAKVTHEFIHINHLKLICRAHQL 217 (283)
Q Consensus 158 f~~LPlaai---------~~~--~dllWsdP~~-~~~~~~------~--~rg~g~~fg~~~~~~fl~~~~l~~iIRgHq~ 217 (283)
...|-|-.+ ..+ ..+.|-.|.. .+.|-+ | .++..-++.++.+..|+. ++|=|||+
T Consensus 174 ~tklALYGLg~irDeRL~R~Fk~~~V~f~rPe~~e~dWFNllvlHQNr~~h~~tn~lpE~flp~F~D-----lviWGHEH 248 (646)
T KOG2310|consen 174 STKLALYGLGSIRDERLYRMFKNGKVTFLRPEEYEDDWFNLLVLHQNRSKHRPTNFLPEQFLPDFLD-----LVIWGHEH 248 (646)
T ss_pred ceeEEEeeccccchHHHHHHHHhCceEEecCccccccceeeEEEeecccCCCCcccCcHhHhhhhhh-----heeecccc
Confidence 111222111 111 2478999988 477743 1 223234678888888875 79999986
No 128
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=55.53 E-value=16 Score=36.95 Aligned_cols=65 Identities=15% Similarity=0.083 Sum_probs=34.9
Q ss_pred CEEEEcCCCCCHHH----------HHHHHHhcC-----CCCCCeEEEeCCccCCCCCc-----HHHHHHHHHhhhcCCCc
Q psy248 59 PLYKESDVFFNFYD----------LEQLFRTGG-----QVPDTNYIFMGDFVDRGYYS-----LETLTRLLTLKARWPHR 118 (283)
Q Consensus 59 ~i~VvGDiHG~~~~----------L~~ll~~~~-----~~~~~~~vfLGD~vDrG~~s-----~e~l~~l~~lk~~~P~~ 118 (283)
.|+-+.|+||++.. +..+++... ..+..-++.-||.+.-.+.+ .-++.++-.+.. .
T Consensus 36 til~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~~mN~~g~----D 111 (551)
T PRK09558 36 TILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIGY----D 111 (551)
T ss_pred EEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhhhhcCCchhHHHHhcCCC----C
Confidence 67889999998741 223343322 12333455589998643322 123333433432 3
Q ss_pred EEEeCCCccc
Q psy248 119 ITLLRGNHES 128 (283)
Q Consensus 119 v~llrGNHE~ 128 (283)
+ ...||||.
T Consensus 112 a-~tlGNHEF 120 (551)
T PRK09558 112 A-MAVGNHEF 120 (551)
T ss_pred E-Eccccccc
Confidence 3 34499996
No 129
>KOG2679|consensus
Probab=51.23 E-value=9.4 Score=35.70 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=42.6
Q ss_pred CCEEEEcCC--CCCHHHHHHHHHhc--CC-CCCCeEEEeCCcc-CCCCCc---------HHHHHHHHHhhhcCCCcEEEe
Q psy248 58 NPLYKESDV--FFNFYDLEQLFRTG--GQ-VPDTNYIFMGDFV-DRGYYS---------LETLTRLLTLKARWPHRITLL 122 (283)
Q Consensus 58 ~~i~VvGDi--HG~~~~L~~ll~~~--~~-~~~~~~vfLGD~v-DrG~~s---------~e~l~~l~~lk~~~P~~v~ll 122 (283)
-++.||||- +|.+..-+..+... |. -..+.+|-+||=+ |-|..+ -|-+.---.|++ +.+.+
T Consensus 44 lsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQk----pWy~v 119 (336)
T KOG2679|consen 44 LSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSLQK----PWYSV 119 (336)
T ss_pred eEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCCCChhHHhhhhhcccCccccc----chhhh
Confidence 478999995 77777666555442 22 2335577799976 555433 333333333433 67899
Q ss_pred CCCcccc
Q psy248 123 RGNHESR 129 (283)
Q Consensus 123 rGNHE~~ 129 (283)
.||||.+
T Consensus 120 lGNHDyr 126 (336)
T KOG2679|consen 120 LGNHDYR 126 (336)
T ss_pred ccCcccc
Confidence 9999986
No 130
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=46.98 E-value=26 Score=37.27 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=38.0
Q ss_pred CCEEEEcCCCCCHHH----------------HHHHHHhcCC-CCCCeEEEeCCccCCCCCc-------------------
Q psy248 58 NPLYKESDVFFNFYD----------------LEQLFRTGGQ-VPDTNYIFMGDFVDRGYYS------------------- 101 (283)
Q Consensus 58 ~~i~VvGDiHG~~~~----------------L~~ll~~~~~-~~~~~~vfLGD~vDrG~~s------------------- 101 (283)
-+|+-..|+||++.. +..++++... .+..-+|-.||.+.-.+.+
T Consensus 40 L~IL~TnDiHg~l~~~dy~~~~~~~~~Glar~AtlI~~~R~e~~ntlllD~GD~iqGspl~~~~~~~~~~~~~~~~~~~~ 119 (780)
T PRK09418 40 LRILETSDIHVNLMNYDYYQTKTDNKVGLVQTATLVNKAREEAKNSVLFDDGDALQGTPLGDYVANKINDPKKPVDPSYT 119 (780)
T ss_pred EEEEEEeecCCCCcCcCccccCCcCCCCHHHHHHHHHHHHHhCCCeEEEECCCCCCCchHHHHHhhcccccccccccccc
Confidence 378889999999632 2334444322 2233455689988543322
Q ss_pred HHHHHHHHHhhhcCCCcEEEeCCCccc
Q psy248 102 LETLTRLLTLKARWPHRITLLRGNHES 128 (283)
Q Consensus 102 ~e~l~~l~~lk~~~P~~v~llrGNHE~ 128 (283)
.-++.++-.|.. =....||||.
T Consensus 120 ~p~i~~mN~lgy-----Da~tlGNHEF 141 (780)
T PRK09418 120 HPLYRLMNLMKY-----DVISLGNHEF 141 (780)
T ss_pred hHHHHHHhccCC-----CEEecccccc
Confidence 224444444433 2477899995
No 131
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=46.90 E-value=6.5 Score=33.46 Aligned_cols=48 Identities=23% Similarity=0.382 Sum_probs=33.0
Q ss_pred eecChHHHHHHHHhcCceEE---------EeeeeeeeccceEeeCCeEEEEEcCCCCCccCCC
Q psy248 192 WLFGAKVTHEFIHINHLKLI---------CRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGN 245 (283)
Q Consensus 192 ~~fg~~~~~~fl~~~~l~~i---------IRgHq~v~~G~~~~~~~~~iTifSa~~y~~~~~N 245 (283)
+.-+++..+.||.+-|-+.| |||+-+++..+.+-.+ +.+|.||.+|+.
T Consensus 20 ~~~~p~~~~~fC~kCG~~tI~~Cp~C~~~IrG~y~v~gv~~~g~~------~~~PsYC~~CGk 76 (158)
T PF10083_consen 20 YDKNPELREKFCSKCGAKTITSCPNCSTPIRGDYHVEGVFGLGGH------YEAPSYCHNCGK 76 (158)
T ss_pred cccCchHHHHHHHHhhHHHHHHCcCCCCCCCCceecCCeeeeCCC------CCCChhHHhCCC
Confidence 34456777888888875555 8999887544443211 569999988774
No 132
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=44.15 E-value=68 Score=23.78 Aligned_cols=69 Identities=16% Similarity=0.060 Sum_probs=47.5
Q ss_pred CCEEEEcCCCCCHHHHHHHHHhcCC--CCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCc
Q psy248 58 NPLYKESDVFFNFYDLEQLFRTGGQ--VPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNH 126 (283)
Q Consensus 58 ~~i~VvGDiHG~~~~L~~ll~~~~~--~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNH 126 (283)
..+.|+=|---+.+.+..+++.+.. +....++.+|+.-|+|..+.+....+..+...+.+.+++...|+
T Consensus 12 ~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 82 (91)
T PF02875_consen 12 NGPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTGDNP 82 (91)
T ss_dssp TTEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEETSBT
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcCCCC
Confidence 3567777877888888888876532 34556778999999888888877777777666666766665554
No 133
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=39.10 E-value=1.6e+02 Score=24.96 Aligned_cols=58 Identities=22% Similarity=0.257 Sum_probs=41.2
Q ss_pred EEEcCCCCCHHHHHHHHHh-cCC------------CCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEE
Q psy248 61 YKESDVFFNFYDLEQLFRT-GGQ------------VPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITL 121 (283)
Q Consensus 61 ~VvGDiHG~~~~L~~ll~~-~~~------------~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~l 121 (283)
++..-.+||-..+.+.+.. ++- ..+-.+||+|-.+|+|.-.-++..+|..|+ +.+|++
T Consensus 2 IvYsS~TGNTkkvA~aI~~~l~~~~~~~~~~~~~~~~~yD~i~lG~w~d~G~~d~~~~~fl~~l~---~KkV~l 72 (160)
T PF12641_consen 2 IVYSSRTGNTKKVAEAIAEALGAKDIVSVEEPPEDLEDYDLIFLGFWIDKGTPDKDMKEFLKKLK---GKKVAL 72 (160)
T ss_pred EEEECCCChHHHHHHHHHHHCCCceeEeccccccCCCCCCEEEEEcCccCCCCCHHHHHHHHHcc---CCeEEE
Confidence 4566677887777655432 222 133469999999999999999999998875 345554
No 134
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=37.88 E-value=58 Score=28.94 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=26.6
Q ss_pred cCceEEEeeeeeeeccceEeeCCeEEEEEcCCCCC
Q psy248 206 NHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYC 240 (283)
Q Consensus 206 ~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~~y~ 240 (283)
.|+++||-||.++..+++.. ++++| +||--|+.
T Consensus 204 ~G~DvIiG~H~H~~~~~e~~-~~~~I-~YslGNfi 236 (239)
T smart00854 204 AGADVVIGHHPHVLQPIEIY-KGKLI-AYSLGNFI 236 (239)
T ss_pred cCCCEEEcCCCCcCCceEEE-CCEEE-EEcccccc
Confidence 68999999999999999875 56666 68876654
No 135
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=32.07 E-value=84 Score=27.78 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=27.0
Q ss_pred HHhcCceEEEeeeeeeeccceEeeCCeEEEEEcCCCCC
Q psy248 203 IHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYC 240 (283)
Q Consensus 203 l~~~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~~y~ 240 (283)
+-..|+++||-+|.++..++++. ++++ -+||--|++
T Consensus 203 l~~~G~D~IiG~H~Hv~q~~E~~-~~~~-I~YSlGNfi 238 (239)
T cd07381 203 LIDAGADLVIGHHPHVLQGIEIY-KGKL-IFYSLGNFV 238 (239)
T ss_pred HHHCCCCEEEcCCCCcCCCeEEE-CCEE-EEEcCCCcc
Confidence 33469999999999999999884 4554 448876653
No 136
>PF09637 Med18: Med18 protein; InterPro: IPR019095 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med18 is one subunit of the Mediator complex and a component of the head module that is involved in stimulating basal RNA polymerase II (PolII) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZM_F 2HZS_H 3RJ1_E 3C0T_A.
Probab=31.97 E-value=83 Score=28.54 Aligned_cols=74 Identities=9% Similarity=0.124 Sum_probs=50.5
Q ss_pred ChHHHHHHHHhcCceEEEeeeeeeeccceEeeCCeEEEEEcCCCCCccC---CCeEEEEEEeCCCceeeEEEecCCCCCC
Q psy248 195 GAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRC---GNIASILKFNSVDNRTPALFQAVPNEER 271 (283)
Q Consensus 195 g~~~~~~fl~~~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~~y~~~~---~N~aavl~i~~~~~~~~~~~~~~~~~~~ 271 (283)
....+.+||+.+|... -+|++.+||+|.+++=.|+||---...... .+..+.-.++..+.+-++.+-.++....
T Consensus 139 ~~~~~~~fl~~lGy~~---~~Eyv~~G~~F~~g~i~I~l~ri~~~~~~~~~~~~~~~l~~~d~s~~~lv~a~v~v~~~~d 215 (250)
T PF09637_consen 139 TSGSLLSFLNELGYRF---DYEYVVEGYRFFKGDIVIELFRIFKVPPPGQYPPPFDKLKPLDPSGSWLVEASVNVPDGTD 215 (250)
T ss_dssp SSSSHHHHHHHTTEEE---EEEEEEEEEEEEECCEEEEEEEEEEEETTCCE---SS-EEECTTTTEEEEEEEEEESTTTS
T ss_pred CCCCHHHHHHHcCCce---EEEEEEEEEEEEECCEEEEEEEEEecCCCCCCCCCcccCCccCCCCCEEEEEEEEccCCCC
Confidence 5667789999999776 789999999999988777776542221110 1223556667788888877777766544
No 137
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=31.93 E-value=56 Score=30.03 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=12.4
Q ss_pred CCCcEEEeCCCcccc
Q psy248 115 WPHRITLLRGNHESR 129 (283)
Q Consensus 115 ~P~~v~llrGNHE~~ 129 (283)
-.++|++|-||||.-
T Consensus 126 inknvvvlagnhein 140 (318)
T PF13258_consen 126 INKNVVVLAGNHEIN 140 (318)
T ss_pred cccceEEEecCceec
Confidence 346899999999974
No 138
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=30.80 E-value=1.8e+02 Score=28.50 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=47.7
Q ss_pred CCEEEEcCCCC-CHHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcC-CCcEEEeCC
Q psy248 58 NPLYKESDVFF-NFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARW-PHRITLLRG 124 (283)
Q Consensus 58 ~~i~VvGDiHG-~~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~-P~~v~llrG 124 (283)
..++||=|-|. +.+.+..+|+.+...+..+++.+||+...|+.+.+.-.-+....... .+.++++ |
T Consensus 325 ~g~~iIDDsYn~nP~s~~aaL~~l~~~~~r~i~VlG~m~elG~~~~~~h~~~~~~~~~~~~d~v~~~-G 392 (453)
T PRK10773 325 EGQLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDMAELGAESEACHRQVGEAAKAAGIDKVLSV-G 392 (453)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEECChhhcchHHHHHHHHHHHHHHHcCCCEEEEE-C
Confidence 45788888655 57888888776654345678899999999999998887776655443 3556544 5
No 139
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=28.18 E-value=70 Score=29.54 Aligned_cols=39 Identities=21% Similarity=0.503 Sum_probs=25.7
Q ss_pred eEEEeCCccCCCCCcHHHH-HHHHHhhhcCCCcEEEeCCCcccc
Q psy248 87 NYIFMGDFVDRGYYSLETL-TRLLTLKARWPHRITLLRGNHESR 129 (283)
Q Consensus 87 ~~vfLGD~vDrG~~s~e~l-~~l~~lk~~~P~~v~llrGNHE~~ 129 (283)
+++|+||+|.+ .+.+.+ ..|-.+|.+++--+.+ .|=|..
T Consensus 2 ~ilfiGDi~G~--~Gr~~l~~~L~~lk~~~~~D~vI--aNgEn~ 41 (266)
T TIGR00282 2 KFLFIGDVYGK--AGRKIVKNNLPQLKSKYQADLVI--ANGENT 41 (266)
T ss_pred eEEEEEecCCH--HHHHHHHHHHHHHHHhCCCCEEE--EcCccc
Confidence 68999999954 334443 4577788887655444 466665
No 140
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=28.18 E-value=1.6e+02 Score=23.69 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=41.4
Q ss_pred CEEEEcCCCCCHHHHHHHHHhcCC----------------------CCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCC
Q psy248 59 PLYKESDVFFNFYDLEQLFRTGGQ----------------------VPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWP 116 (283)
Q Consensus 59 ~i~VvGDiHG~~~~L~~ll~~~~~----------------------~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P 116 (283)
|-++|||...--....+.++..|. .+...++.+|-.=.|-.+.+..+.++..++.. .
T Consensus 37 Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~kD~TD~e~Al~~~~~~~~~~i~v~Ga~GgR~DH~lanl~~l~~~~~~-~ 115 (123)
T PF04263_consen 37 PDLIIGDFDSISPEVLEFYKSKGVEIIHFPEKDYTDLEKALEYAIEQGPDEIIVLGALGGRFDHTLANLNLLYKYKKR-G 115 (123)
T ss_dssp -SEEEC-SSSS-HHHHHHHHHCTTEEEEE-STTS-HHHHHHHHHHHTTTSEEEEES-SSSSHHHHHHHHHHHHHHHTT-T
T ss_pred CCEEEecCCCCChHHHHHHHhhccceecccccccCHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHHHHHHHHHHHHc-C
Confidence 668888888887777776665432 23457888898888888888888888887632 2
Q ss_pred CcEEEe
Q psy248 117 HRITLL 122 (283)
Q Consensus 117 ~~v~ll 122 (283)
-+++++
T Consensus 116 ~~i~li 121 (123)
T PF04263_consen 116 IKIVLI 121 (123)
T ss_dssp SEEEEE
T ss_pred CeEEEE
Confidence 345443
No 141
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=27.96 E-value=1.7e+02 Score=22.93 Aligned_cols=64 Identities=20% Similarity=0.176 Sum_probs=44.3
Q ss_pred CEEEEcCCCCCHHHHHHHHHhcCCCC-----------------CCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEE
Q psy248 59 PLYKESDVFFNFYDLEQLFRTGGQVP-----------------DTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITL 121 (283)
Q Consensus 59 ~i~VvGDiHG~~~~L~~ll~~~~~~~-----------------~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~l 121 (283)
+|.||.|=-....+|..+|+..|... ...+|.+|+.- .....+..+...+|.-=++
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~-------~~~~~l~~l~~~~~~~Pvl 73 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDWSQADWSSPWEACAVILGSCS-------KLAELLKELLKWAPHIPVL 73 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHHHHhhhhcCCcEEEEEecCch-------hHHHHHHHHHhhCCCCCEE
Confidence 46677777777777777877776631 12345556542 5667777777788888888
Q ss_pred eCCCcccc
Q psy248 122 LRGNHESR 129 (283)
Q Consensus 122 lrGNHE~~ 129 (283)
+.|.++..
T Consensus 74 llg~~~~~ 81 (109)
T PF06490_consen 74 LLGEHDSP 81 (109)
T ss_pred EECCCCcc
Confidence 88998876
No 142
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=27.53 E-value=1.1e+02 Score=27.35 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=29.1
Q ss_pred HHHHhcCceEEEeeeeeeeccceEeeCCeEEEEEcCCCCC
Q psy248 201 EFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYC 240 (283)
Q Consensus 201 ~fl~~~~l~~iIRgHq~v~~G~~~~~~~~~iTifSa~~y~ 240 (283)
+.+-..|+++||-+|.++..|+++. .+++| +||--|+.
T Consensus 210 ~~lidaGaDiIiG~HpHv~q~~E~y-~~~~I-~YSLGNfi 247 (250)
T PF09587_consen 210 RALIDAGADIIIGHHPHVIQPVEIY-KGKPI-FYSLGNFI 247 (250)
T ss_pred HHHHHcCCCEEEeCCCCcccceEEE-CCEEE-EEeCcccc
Confidence 3344479999999999999999986 55544 58887764
No 143
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=26.12 E-value=84 Score=27.79 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=25.2
Q ss_pred ecChHHHHHHHHhcCceEEEeeeeeeecc
Q psy248 193 LFGAKVTHEFIHINHLKLICRAHQLVHEG 221 (283)
Q Consensus 193 ~fg~~~~~~fl~~~~l~~iIRgHq~v~~G 221 (283)
.+|...+.+++++.+++++|.||-+...+
T Consensus 195 ~~~s~~l~~li~~~~v~~~i~GH~H~~~~ 223 (239)
T TIGR03729 195 FLGSQHFGQLLVKYEIKDVIFGHLHRRFG 223 (239)
T ss_pred ccChHHHHHHHHHhCCCEEEECCccCCCC
Confidence 56888899999999999999999997644
No 144
>KOG3153|consensus
Probab=25.48 E-value=2e+02 Score=26.23 Aligned_cols=97 Identities=19% Similarity=0.217 Sum_probs=56.9
Q ss_pred HHHhhhccccCcccccccCCCccccccccchhhhhcccccccccCCCEEEEcCCCCCHHHHHHHHHhcCCC---------
Q psy248 13 SFYYKLTNLSGVEVSTVDSGSGETISYLTSSELISTQYITTASCCNPLYKESDVFFNFYDLEQLFRTGGQV--------- 83 (283)
Q Consensus 13 ~~~~~~~~~~~~~~s~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~i~VvGDiHG~~~~L~~ll~~~~~~--------- 83 (283)
+|++.+|+.-.+|.. .+.+.+++...+..++ ...|=+|+||.-.=-.+.....+..|-+
T Consensus 38 ~~f~~LWk~A~lRvc-aDGgaNrlyd~~~~~~-----------~~~Pd~I~GDfDSi~~ev~~yy~~~g~~vV~~pdQd~ 105 (250)
T KOG3153|consen 38 NRFRLLWKKAKLRVC-ADGGANRLYDYLSDRT-----------SEKPDYICGDFDSITEEVDDYYKKNGVTVVHTPDQDT 105 (250)
T ss_pred HHHHHHHhhhheeEe-ccCchhhhhhhccccc-----------ccCCceeecchhhhhHHHHHHHHhcCCeeEeCCCcCc
Confidence 455666665555544 3456777777766222 1235578888755555555555543321
Q ss_pred ----------------C---CCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEe
Q psy248 84 ----------------P---DTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLL 122 (283)
Q Consensus 84 ----------------~---~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~ll 122 (283)
+ ...++.||++-+|-.+.+..+.-|+.+.... -+++++
T Consensus 106 TDftKcv~~i~~~~~~~e~~~~~IvvlgglgGRfDq~m~nln~Ly~~~~~~-~~i~ll 162 (250)
T KOG3153|consen 106 TDFTKCVKWIQEHKTLTEWKFLNIVVLGGLGGRFDQTMANLNTLYRAVDIQ-FPIFLL 162 (250)
T ss_pred chHHHHHHHHHHhcccccceeeeEEEecccCccHHHHHHhHHHhhehhccc-cceEEe
Confidence 1 1237778999888888888887777664432 245554
No 145
>KOG3339|consensus
Probab=23.78 E-value=2.7e+02 Score=24.78 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=38.2
Q ss_pred CeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccchhccCch
Q psy248 86 TNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQITQVYGFY 138 (283)
Q Consensus 86 ~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~~~~gf~ 138 (283)
..+||+|- |-+.-|.+.++-.++.+|-.+-+ +-|+-|.++.++...|.
T Consensus 40 ~~lVvlGS----GGHT~EMlrLl~~l~~~y~~r~y-I~a~tD~mS~~k~~~F~ 87 (211)
T KOG3339|consen 40 STLVVLGS----GGHTGEMLRLLEALQDLYSPRSY-IAADTDEMSEQKARSFE 87 (211)
T ss_pred eEEEEEcC----CCcHHHHHHHHHHHHhhcCceEE-EEecCchhhHHHHHhhh
Confidence 45888885 89999999999999998855544 48999999887665543
No 146
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=22.93 E-value=1.7e+02 Score=26.42 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=21.4
Q ss_pred ChHHHHHHHHhcCceEEEeeeeeeec
Q psy248 195 GAKVTHEFIHINHLKLICRAHQLVHE 220 (283)
Q Consensus 195 g~~~~~~fl~~~~l~~iIRgHq~v~~ 220 (283)
..+.+.+.+++.++++++-||.+.-+
T Consensus 181 ~~~~l~~ll~~~~v~~vl~GH~H~y~ 206 (294)
T cd00839 181 MRAALEDLFYKYGVDLVLSGHVHAYE 206 (294)
T ss_pred HHHHHHHHHHHhCCCEEEEccceeeE
Confidence 34667788999999999999999643
No 147
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=22.79 E-value=2.5e+02 Score=21.85 Aligned_cols=44 Identities=27% Similarity=0.577 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCCCCeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEe
Q psy248 70 FYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLL 122 (283)
Q Consensus 70 ~~~L~~ll~~~~~~~~~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~ll 122 (283)
...+.++++. -|+.++|++||= |..-.|+..-+. .+||++|..+
T Consensus 52 ~~~i~~i~~~---fP~~kfiLIGDs---gq~DpeiY~~ia---~~~P~~i~ai 95 (100)
T PF09949_consen 52 RDNIERILRD---FPERKFILIGDS---GQHDPEIYAEIA---RRFPGRILAI 95 (100)
T ss_pred HHHHHHHHHH---CCCCcEEEEeeC---CCcCHHHHHHHH---HHCCCCEEEE
Confidence 3455556654 467889999985 666677777764 4589987643
No 148
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=22.74 E-value=73 Score=29.16 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=26.6
Q ss_pred eEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccc
Q psy248 87 NYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESR 129 (283)
Q Consensus 87 ~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~ 129 (283)
+++|+||+|.+.-.. -+...|-.+|.+++.-+.+. |=|..
T Consensus 1 ~ilfigdi~g~~G~~-~~~~~l~~lk~~~~~D~vi~--NgEn~ 40 (255)
T cd07382 1 KILFIGDIVGKPGRK-AVKEHLPKLKKEYKIDFVIA--NGENA 40 (255)
T ss_pred CEEEEEeCCCHHHHH-HHHHHHHHHHHHCCCCEEEE--CCccc
Confidence 479999999874332 35566788888886555554 44543
No 149
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=20.36 E-value=91 Score=32.39 Aligned_cols=42 Identities=26% Similarity=0.461 Sum_probs=36.4
Q ss_pred CeEEEeCCccCCCCCcHHHHHHHHHhhhcCCCcEEEeCCCcccccch
Q psy248 86 TNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQIT 132 (283)
Q Consensus 86 ~~~vfLGD~vDrG~~s~e~l~~l~~lk~~~P~~v~llrGNHE~~~~~ 132 (283)
+++-.+||+.||||.+-.+++.|+.. ..|=+--||||-..+.
T Consensus 186 DhLHIvGDIyDRGp~pd~ImD~Lm~~-----hsvDIQWGNHDIlWMG 227 (640)
T PF06874_consen 186 DHLHIVGDIYDRGPRPDKIMDRLMNY-----HSVDIQWGNHDILWMG 227 (640)
T ss_pred hheeecccccCCCCChhHHHHHHhcC-----CCccccccchHHHHHH
Confidence 57889999999999999999999876 3688999999986664
Done!