RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy248
(283 letters)
>gnl|CDD|163658 cd07415, MPP_PP2A_PP4_PP6, PP2A, PP4, and PP6 phosphoprotein
phosphatases, metallophosphatase domain. PP2A-like
family of phosphoprotein phosphatases (PPP's) including
PP4 and PP6. PP2A (Protein phosphatase 2A) is a
critical regulator of many cellular activities. PP2A
comprises about 1% of total cellular proteins. PP2A,
together with protein phosphatase 1 (PP1), accounts for
more than 90% of all serine/threonine phosphatase
activities in most cells and tissues. The PP2A subunit
in addition to having a catalytic domain homologous to
PP1, has a unique C-terminal tail, containing a motif
that is conserved in the catalytic subunits of all
PP2A-like phosphatases including PP4 and PP6, and has an
important role in PP2A regulation. The PP2A-like family
of phosphatases all share a similar heterotrimeric
architecture, that includes: a 65kDa scaffolding subunit
(A), a 36kDa catalytic subunit (C), and one of 18
regulatory subunits (B). The PPP (phosphoprotein
phosphatase) family, to which PP2A belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 285
Score = 363 bits (934), Expect = e-127
Identities = 132/237 (55%), Positives = 159/237 (67%), Gaps = 34/237 (14%)
Query: 65 DVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRG 124
D+ FYDL +LFR GG PDTNY+F+GD+VDRGYYS+ET LL LK R+P RITLLRG
Sbjct: 49 DIHGQFYDLLELFRVGGDPPDTNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRG 108
Query: 125 NHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV------------------ 166
NHESRQITQVYGFYDEC KYGN+N WKYC +FD+L +AA+
Sbjct: 109 NHESRQITQVYGFYDECLRKYGNANVWKYCTDLFDYLPLAALIDNQIFCVHGGLSPSIDT 168
Query: 167 ----------------SAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKL 210
CDL+WSDP ++E W +SPRGAG+LFG V EF H N L L
Sbjct: 169 LDQIRAIDRFQEVPHEGPMCDLLWSDPDDIEGWGISPRGAGYLFGQDVVEEFNHNNGLTL 228
Query: 211 ICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQAVP 267
ICRAHQLV EGY++MFD LVT+WSAPNYCYRCGN+ASI++ + R+ +F+A P
Sbjct: 229 ICRAHQLVMEGYQWMFDDKLVTVWSAPNYCYRCGNVASIMELDEHLKRSFKVFEAAP 285
>gnl|CDD|173488 PTZ00239, PTZ00239, serine/threonine protein phosphatase 2A;
Provisional.
Length = 303
Score = 324 bits (831), Expect = e-111
Identities = 137/254 (53%), Positives = 162/254 (63%), Gaps = 35/254 (13%)
Query: 65 DVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRG 124
D+ FYDL+ LF+ GG +P+ NYIF+GDFVDRGY S+ET+ LL LK ++P ITLLRG
Sbjct: 50 DIHGQFYDLQALFKEGGDIPNANYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRG 109
Query: 125 NHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV------------------ 166
NHESRQ TQVYGFY+E KYGNSN W+ VFD L +AA+
Sbjct: 110 NHESRQCTQVYGFYEEILRKYGNSNPWRLFMDVFDCLPLAALIEGQILCVHGGLSPDMRT 169
Query: 167 ----------------SAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKL 210
FCDL+WSDP EVE W V+ RGAG+LFGAKVT EF +N L L
Sbjct: 170 IDQIRTIDRKIEIPHEGPFCDLMWSDPEEVEYWAVNSRGAGYLFGAKVTKEFCRLNDLTL 229
Query: 211 ICRAHQLVHEGYKYMF-DGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQAVPNE 269
ICRAHQLV EGYKY F D NLVT+WSAPNYCYRCGNIASIL + +T F+ VP
Sbjct: 230 ICRAHQLVMEGYKYWFPDQNLVTVWSAPNYCYRCGNIASILCLDENLQQTWKTFKEVPES 289
Query: 270 ERVIPDRVITPYFL 283
+ I + + PYFL
Sbjct: 290 AKSINPKNVLPYFL 303
>gnl|CDD|197547 smart00156, PP2Ac, Protein phosphatase 2A homologues, catalytic
domain. Large family of serine/threonine phosphatases,
that includes PP1, PP2A and PP2B (calcineurin) family
members.
Length = 271
Score = 247 bits (634), Expect = 5e-82
Identities = 96/234 (41%), Positives = 131/234 (55%), Gaps = 36/234 (15%)
Query: 69 NFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHES 128
F DL +LF GQ P+TNY+F+GD+VDRG +S+E + L LK +P+RI LLRGNHES
Sbjct: 39 QFDDLLRLFDKNGQPPETNYVFLGDYVDRGPFSIEVILLLFALKILYPNRIVLLRGNHES 98
Query: 129 RQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV---------------------- 166
R + ++YGFYDEC+ KYG ++ + F +L +AA+
Sbjct: 99 RSMNEIYGFYDECKRKYG-ERIYEKFNEAFSWLPLAALINGKILCMHGGLSPDLTTLDDI 157
Query: 167 ------------SAFCDLVWSDPA-EVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICR 213
DL+WSDP V + S RGA ++FG EF+ N+LKLI R
Sbjct: 158 RKLKRPQEPPDDGLLIDLLWSDPDQPVNGFGPSIRGASYIFGPDAVDEFLKKNNLKLIIR 217
Query: 214 AHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQAVP 267
AHQ+V +GY++ DG LVTI+SAPNYC R GN A++LK + T F+
Sbjct: 218 AHQVVDDGYEFFADGKLVTIFSAPNYCDRFGNKAAVLKVDKDLKLTFEQFKPGK 271
>gnl|CDD|163657 cd07414, MPP_PP1_PPKL, PP1, PPKL (PP1 and kelch-like) enzymes, and
related proteins, metallophosphatase domain. PP1
(protein phosphatase type 1) is a serine/threonine
phosphatase that regulates many cellular processes
including: cell-cycle progression, protein synthesis,
muscle contraction, carbohydrate metabolism,
transcription and neuronal signaling, through its
interaction with at least 180 known targeting proteins.
PP1 occurs in all tissues and regulates many pathways,
ranging from cell-cycle progression to carbohydrate
metabolism. Also included here are the PPKL (PP1 and
kelch-like) enzymes including the PPQ, PPZ1, and PPZ2
fungal phosphatases. These PPKLs have a large
N-terminal kelch repeat in addition to a C-terminal
phosphoesterase domain. The PPP (phosphoprotein
phosphatase) family, to which PP1 belongs, is one of two
known protein phosphatase families specific for serine
and threonine. The PPP family also includes: PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 293
Score = 185 bits (472), Expect = 2e-57
Identities = 84/211 (39%), Positives = 117/211 (55%), Gaps = 36/211 (17%)
Query: 65 DVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRG 124
D+ +YDL +LF GG P++NY+F+GD+VDRG SLET+ LL K ++P LLRG
Sbjct: 57 DIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRG 116
Query: 125 NHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV------------------ 166
NHE I ++YGFYDEC+ +Y N WK F+ L +AA+
Sbjct: 117 NHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPVAAIIDEKIFCMHGGLSPDLQS 175
Query: 167 ----------------SAFCDLVWSDP-AEVETWTVSPRGAGWLFGAKVTHEFIHINHLK 209
CDL+WSDP +V+ W + RG + FG V +F++ + L
Sbjct: 176 MEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGKDVVAKFLNKHDLD 235
Query: 210 LICRAHQLVHEGYKYMFDGNLVTIWSAPNYC 240
LICRAHQ+V +GY++ LVT++SAPNYC
Sbjct: 236 LICRAHQVVEDGYEFFAKRQLVTLFSAPNYC 266
>gnl|CDD|185658 PTZ00480, PTZ00480, serine/threonine-protein phosphatase;
Provisional.
Length = 320
Score = 165 bits (419), Expect = 2e-49
Identities = 89/248 (35%), Positives = 129/248 (52%), Gaps = 39/248 (15%)
Query: 59 PLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHR 118
PL DV ++DL +LF GG P++NY+F+GD+VDRG SLET+ LL K ++P
Sbjct: 60 PLKICGDVHGQYFDLLRLFEYGGYPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPEN 119
Query: 119 ITLLRGNHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV------------ 166
LLRGNHE I ++YGFYDEC+ +Y WK F+ L +AA+
Sbjct: 120 FFLLRGNHECASINRIYGFYDECKRRY-TIKLWKTFTDCFNCLPVAALIDEKILCMHGGL 178
Query: 167 ----------------------SAFCDLVWSDP-AEVETWTVSPRGAGWLFGAKVTHEFI 203
CDL+WSDP +V+ W + RG ++F ++ F+
Sbjct: 179 SPELSNLEQIRRIMRPTDVPDTGLLCDLLWSDPDKDVQGWADNERGVSYVFSQEIVQVFL 238
Query: 204 HINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALF 263
+ L LICRAHQ+V +GY++ LVT++SAPNYC N S++ ++D F
Sbjct: 239 KKHELDLICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGSMM---TIDESLMCSF 295
Query: 264 QAVPNEER 271
Q + E+
Sbjct: 296 QILKPAEQ 303
>gnl|CDD|163613 cd00144, MPP_PPP_family, phosphoprotein phosphatases of the
metallophosphatase superfamily, metallophosphatase
domain. The PPP (phosphoprotein phosphatase) family is
one of two known protein phosphatase families specific
for serine and threonine. This family includes: PP1,
PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 225
Score = 160 bits (407), Expect = 1e-48
Identities = 78/226 (34%), Positives = 101/226 (44%), Gaps = 41/226 (18%)
Query: 64 SDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLR 123
D+ DL +L G P+ IF+GD+VDRG S+E + LL LK P + LLR
Sbjct: 4 GDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLR 62
Query: 124 GNHESRQITQVYGFYDECQ--------TKYGNSNAWKYCCKVFDFLTIAAV----SAFC- 170
GNHE + +YGFYDE + K + W+ VF +L +AA+ C
Sbjct: 63 GNHEDMLLNFLYGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCV 122
Query: 171 ------------------------DLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHIN 206
DL+WSDP E+ S R G G F+ N
Sbjct: 123 HGGLSPGLPLEEQIKEEPEDQLPEDLLWSDPLELPGGFGSSRRGG---GPDAVEWFLKKN 179
Query: 207 HLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKF 252
LKLI R H V EGY++ DGNL+TI S NYC GN + L
Sbjct: 180 GLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNKLAALVL 225
>gnl|CDD|163660 cd07417, MPP_PP5_C, PP5, C-terminal metallophosphatase domain.
Serine/threonine protein phosphatase-5 (PP5) is a member
of the PPP gene family of protein phosphatases that is
highly conserved among eukaryotes and widely expressed
in mammalian tissues. PP5 has a C-terminal phosphatase
domain and an extended N-terminal TPR (tetratricopeptide
repeat) domain containing three TPR motifs. The PPP
(phosphoprotein phosphatase) family, to which PP5
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 316
Score = 157 bits (400), Expect = 2e-46
Identities = 79/241 (32%), Positives = 117/241 (48%), Gaps = 40/241 (16%)
Query: 65 DVFFNFYDLEQLFRTGGQVPDTN-YIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLR 123
D FYDL +F G +TN Y+F GDFVDRG +S+E + L K +P+ L R
Sbjct: 67 DTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNR 126
Query: 124 GNHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV----------------- 166
GNHE+ + ++YGF E + KY N + +VF++L +A +
Sbjct: 127 GNHETDNMNKMYGFEGEVKAKY-NEQMFDLFSEVFNWLPLAHLINGKVLVVHGGLFSDDG 185
Query: 167 ------------------SAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHL 208
C+L+WSDP + S RG G FG VT F+ N+L
Sbjct: 186 VTLDDIRKIDRFRQPPDSGLMCELLWSDPQPQPGRSPSKRGVGCQFGPDVTKRFLEENNL 245
Query: 209 KLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPAL--FQAV 266
+ I R+H++ EGY+ DG +T++SAPNYC + GN + ++ + P F+AV
Sbjct: 246 EYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGNKGAFIRITG-SDLKPKFTQFEAV 304
Query: 267 P 267
P
Sbjct: 305 P 305
>gnl|CDD|163659 cd07416, MPP_PP2B, PP2B, metallophosphatase domain. PP2B
(calcineurin) is a unique serine/threonine protein
phosphatase in its regulation by a second messenger
(calcium and calmodulin). PP2B is involved in many
biological processes including immune responses, the
second messenger cAMP pathway, sodium/potassium ion
transport in the nephron, cell cycle progression in
lower eukaryotes, cardiac hypertrophy, and memory
formation. PP2B is highly conserved from yeast to
humans, but is absent from plants. PP2B is a
heterodimer consisting of a catalytic subunit (CnA) and
a regulatory subunit (CnB); CnB contains four Ca2+
binding motifs referred to as EF hands. The PPP
(phosphoprotein phosphatase) family, to which PP2B
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP4, PP5, PP6, PP7,
Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 305
Score = 150 bits (381), Expect = 1e-43
Identities = 79/237 (33%), Positives = 113/237 (47%), Gaps = 49/237 (20%)
Query: 65 DVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRG 124
D+ FYDL +LF GG +T Y+F+GD+VDRGY+S+E + L LK +P + LLRG
Sbjct: 50 DIHGQFYDLLKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRG 109
Query: 125 NHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV------------------ 166
NHE R +T+ + F EC+ KY + + C + FD L +AA+
Sbjct: 110 NHECRHLTEYFTFKQECKIKY-SERVYDACMEAFDCLPLAALMNQQFLCVHGGLSPELKT 168
Query: 167 ----------------SAFCDLVWSDPAE--VETWTV------SPRGAGWLFGAKVTHEF 202
CDL+WSDP E T + RG + + + EF
Sbjct: 169 LDDIRKLDRFREPPAFGPMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCSYFYSYRAVCEF 228
Query: 203 IHINHLKLICRAHQLVHEGYK-YMFDGN-----LVTIWSAPNYCYRCGNIASILKFN 253
+ N+L I RAH+ GY+ Y L+TI+SAPNY N A++LK+
Sbjct: 229 LQKNNLLSIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYE 285
>gnl|CDD|163662 cd07419, MPP_Bsu1_C, Arabidopsis thaliana Bsu1 phosphatase and
related proteins, C-terminal metallophosphatase domain.
Bsu1 encodes a nuclear serine-threonine protein
phosphatase found in plants and protozoans. Bsu1 has a
C-terminal phosphatase domain and an N-terminal
Kelch-repeat domain. Bsu1 is preferentially expressed
in elongating plant cells. It modulates the
phosphorylation state of Bes1, a transcriptional
regulator phosphorylated by the glycogen synthase kinase
Bin2, as part of a steroid hormone signal transduction
pathway. The PPP (phosphoprotein phosphatase) family,
to which Bsu1 belongs, is one of two known protein
phosphatase families specific for serine and threonine.
The PPP family also includes: PP1, PP2A, PP2B
(calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE,
PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain
is defined by three conserved motifs (-GDXHG-, -GDXVDRG-
and -GNHE-). The PPP enzyme family is ancient with
members found in all eukaryotes, and in most bacterial
and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 311
Score = 146 bits (371), Expect = 3e-42
Identities = 79/242 (32%), Positives = 120/242 (49%), Gaps = 56/242 (23%)
Query: 65 DVFFNFYDLEQLF--------RTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWP 116
D+ F DL +LF G + +Y+F+GD+VDRG SLET+ LL LK ++P
Sbjct: 55 DIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETICLLLALKVKYP 114
Query: 117 HRITLLRGNHESRQITQVYGFYDECQTKYGN-----SNAWKYCCKVFDFLTIAAV---SA 168
++I L+RGNHE R I ++GF +EC+ + G + W+ ++F++L +AA+
Sbjct: 115 NQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRLFEWLPLAAIIEDKI 174
Query: 169 FC--------------------------------DLVWSDPAE------VETWTVSPRGA 190
C DL+WSDP E + + PRG
Sbjct: 175 LCMHGGIGRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGP 234
Query: 191 GWL--FGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIAS 248
G + FG H F+ N L++I RAH+ V +G++ G L+T++SA NYC GN +
Sbjct: 235 GLIVKFGPDRVHRFLEENDLQMIIRAHECVMDGFERFAQGKLITLFSATNYCGTAGNAGA 294
Query: 249 IL 250
IL
Sbjct: 295 IL 296
>gnl|CDD|140271 PTZ00244, PTZ00244, serine/threonine-protein phosphatase PP1;
Provisional.
Length = 294
Score = 143 bits (361), Expect = 6e-41
Identities = 78/237 (32%), Positives = 123/237 (51%), Gaps = 37/237 (15%)
Query: 65 DVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRG 124
D +YDL ++F G P +NY+F+GD+VDRG +S+ET+T K +P LLRG
Sbjct: 59 DTHGQYYDLLRIFEKCGFPPYSNYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRG 118
Query: 125 NHESRQITQVYGFYDECQTKYGNS---------NAWKYCCKVF------------DFLTI 163
NHE I ++YGF+D+ + +Y N CC + D ++
Sbjct: 119 NHECASINKMYGFFDDVKRRYNIKLFKAFTDVFNTMPVCCVISEKIICMHGGLSPDLTSL 178
Query: 164 AAVSA------------FCDLVWSDPA-EVETWTVSPRGAGWLFGAKVTHEFIHINHLKL 210
A+V+ CDL+W+DP EV + S RG +LFG + ++F+ + + L
Sbjct: 179 ASVNEIERPCDVPDRGILCDLLWADPEDEVRGFLESDRGVSYLFGEDIVNDFLDMVDMDL 238
Query: 211 ICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQAVP 267
I RAHQ++ GY + LVT++SAPNYC N A+++ ++D++ F +P
Sbjct: 239 IVRAHQVMERGYGFFASRQLVTVFSAPNYCGEFDNDAAVM---NIDDKLQCSFLIIP 292
>gnl|CDD|163661 cd07418, MPP_PP7, PP7, metallophosphatase domain. PP7 is a plant
phosphoprotein phosphatase that is highly expressed in a
subset of stomata and thought to play an important role
in sensory signaling. PP7 acts as a positive regulator
of signaling downstream of cryptochrome blue light
photoreceptors. PP7 also controls amplification of
phytochrome signaling, and interacts with
nucleotidediphosphate kinase 2 (NDPK2), a positive
regulator of phytochrome signalling. In addition, PP7
interacts with heat shock transcription factor HSF and
up-regulates protective heat shock proteins. PP7 may
also play a role in salicylic acid-dependent defense
signaling. The PPP (phosphoprotein phosphatase) family,
to which PP7 belongs, is one of two known protein
phosphatase families specific for serine and threonine.
The PPP family also includes: PP2A, PP2B (calcineurin),
PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 377
Score = 95.6 bits (238), Expect = 1e-22
Identities = 46/113 (40%), Positives = 62/113 (54%), Gaps = 5/113 (4%)
Query: 65 DVFFNFYDLEQLFRTGGQVPDTN--YIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLL 122
DV +D+ L G PD N Y+F GD+VDRG + LET LL+ K P R+ LL
Sbjct: 73 DVHGQLHDVLFLLEDAGF-PDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLL 131
Query: 123 RGNHESRQITQVYGFYDECQTKYGNSNA--WKYCCKVFDFLTIAAVSAFCDLV 173
RGNHES+ T +YGF E TKYG+ ++ C F+ L +A++ A
Sbjct: 132 RGNHESKFCTSMYGFEQEVLTKYGDKGKHVYRKCLGCFEGLPLASIIAGRVYT 184
Score = 54.4 bits (131), Expect = 2e-08
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 20/87 (22%)
Query: 171 DLVWSDPAEVETWTVSP---RGAGWLFGAKVTHEFIHINHLKLICRAHQ----------- 216
D++WSDP+ T +SP RG G L+G T EF+ N+LKLI R+H+
Sbjct: 247 DVLWSDPSL--TPGLSPNKQRGIGLLWGPDCTEEFLEKNNLKLIIRSHEGPDAREKRPGL 304
Query: 217 -LVHEGYKYMFD---GNLVTIWSAPNY 239
+++GY D G L+T++SAP+Y
Sbjct: 305 AGMNKGYTVDHDVESGKLITLFSAPDY 331
>gnl|CDD|215750 pfam00149, Metallophos, Calcineurin-like phosphoesterase. This
family includes a diverse range of phosphoesterases,
including protein phosphoserine phosphatases,
nucleotidases, sphingomyelin phosphodiesterases and
2'-3' cAMP phosphodiesterases as well as nucleases such
as bacterial SbcD or yeast MRE11. The most conserved
regions in this superfamily centre around the metal
chelating residues.
Length = 185
Score = 81.3 bits (200), Expect = 1e-18
Identities = 45/179 (25%), Positives = 62/179 (34%), Gaps = 24/179 (13%)
Query: 64 SDVFFNFYDL---EQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRIT 120
D+ DL L G+ +F+GD VDRG SLE L L LK + P +
Sbjct: 6 GDLHGGLDDLDLLLLLLELLGEPKPDLVLFLGDLVDRGPPSLEVLALLFALKLKAPGPVY 65
Query: 121 LLRGNHESRQITQVYGFYDECQTK-YGNSNAWKYCCKVFDFLTIAAVSAFCDLVWSDPAE 179
L+RGNH+ GFY EC Y N V + LVW + E
Sbjct: 66 LVRGNHDFDSGNSELGFYLECAGLPYVLGNGDVSNGTVEIIGLSSLYGKGGGLVWEEFLE 125
Query: 180 VETWTVSPRGAGW--------------------LFGAKVTHEFIHINHLKLICRAHQLV 218
+ + LFG + + + N + L+ R H V
Sbjct: 126 LLDLLLLAALVDGKILLVHGPLSPSLDSGDDIYLFGEEALEDLLKDNGVDLVLRGHTHV 184
>gnl|CDD|223712 COG0639, ApaH, Diadenosine tetraphosphatase and related
serine/threonine protein phosphatases [Signal
transduction mechanisms].
Length = 155
Score = 73.2 bits (179), Expect = 5e-16
Identities = 47/156 (30%), Positives = 58/156 (37%), Gaps = 44/156 (28%)
Query: 129 RQITQVYGFYDECQTKYGNSNAWKY---CCKVFDFLTIAAV------------------- 166
+T +YGFYDE KYG W + FD L +AAV
Sbjct: 1 MLLTALYGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDR 60
Query: 167 -------------------SAFCDLVWSDPAEVET--WTVSPRGAGWLFGAKVTHEFIHI 205
DL+WSDP + W PRG G F +
Sbjct: 61 LLDIIEVLDRLRACEVPHAGHTHDLLWSDPDGGDRRIWNPGPRGVPRDGGDVTAV-FGIV 119
Query: 206 NHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCY 241
+ KLI RAH L +F G L+T +SAPNYCY
Sbjct: 120 HTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYCY 155
>gnl|CDD|163663 cd07420, MPP_RdgC, Drosophila melanogaster RdgC and related
proteins, metallophosphatase domain. RdgC (retinal
degeneration C) is a vertebrate serine-threonine protein
phosphatase that is required to prevent light-induced
retinal degeneration. In addition to its catalytic
domain, RdgC has two C-terminal EF hands. Homologs of
RdgC include the human phosphatases protein phosphatase
with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1
transcripts are present at low levels in the retina,
PPEF-2 transcripts and PPEF-2 protein are present at
high levels in photoreceptors. The PPP (phosphoprotein
phosphatase) family, to which RdgC belongs, is one of
two known protein phosphatase families specific for
serine and threonine. The PPP family also includes:
PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1,
PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic
domain is defined by three conserved motifs (-GDXHG-,
-GDXVDRG- and -GNHE-). The PPP enzyme family is ancient
with members found in all eukaryotes, and in most
bacterial and archeal genomes. Dephosphorylation of
phosphoserines and phosphothreonines on target proteins
plays a central role in the regulation of many cellular
processes. PPPs belong to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 321
Score = 67.0 bits (164), Expect = 9e-13
Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 46 ISTQYITTASCCNPLY-KESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLET 104
+ST + C L+ K D+F FY + G P+ Y+F GDFVDRG S+E
Sbjct: 45 VSTSISKQVTICGDLHGKLDDLFLIFY------KNGLPSPENPYVFNGDFVDRGKRSIEI 98
Query: 105 LTRLLTLKARWPHRITLLRGNHESRQITQVYGFYDECQTKYG 146
L L +P+ + L RGNHE + YGF E +KY
Sbjct: 99 LIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYK 140
Score = 65.1 bits (159), Expect = 3e-12
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 171 DLVWSDPAEVE-TWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGN 229
D++WSDP + + RG G FG VT + + + L L+ R+H+ EGY++ +
Sbjct: 227 DILWSDPKAQKGCKPNTFRGGGCYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNK 286
Query: 230 LVTIWSAPNYCYRCG-NIASILKFNSVDNRTPALFQ 264
++TI+SA NY Y G N + +K + TP Q
Sbjct: 287 VITIFSASNY-YEEGSNRGAYIKLGP--DLTPHFVQ 319
>gnl|CDD|163614 cd00838, MPP_superfamily, metallophosphatase superfamily,
metallophosphatase domain. Metallophosphatases (MPPs),
also known as metallophosphoesterases,
phosphodiesterases (PDEs), binuclear
metallophosphoesterases, and dimetal-containing
phosphoesterases (DMPs), represent a diverse superfamily
of enzymes with a conserved domain containing an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
This superfamily includes: the phosphoprotein
phosphatases (PPPs), Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 131
Score = 33.0 bits (75), Expect = 0.060
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 88 YIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHE 127
+ +GD V G E L L L + ++ GNH+
Sbjct: 30 VLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD 69
>gnl|CDD|163665 cd07422, MPP_ApaH, Escherichia coli ApaH and related proteins,
metallophosphatase domain. ApaH (also known as
symmetrically cleaving Ap4A hydrolase and
bis(5'nucleosyl)-tetraphosphatase) is a bacterial member
of the PPP (phosphoprotein phosphatase) family of
serine/threonine phosphatases that hydrolyzes the
nucleotide-signaling molecule diadenosine tetraphosphate
(Ap(4)A) into two ADP and also hydrolyzes Ap(5)A,
Gp(4)G, and other extending compounds. Null mutations
in apaH result in high intracellular levels of Ap(4)A
which correlate with multiple phenotypes, including a
decreased expression of catabolite-repressible genes, a
reduction in the expression of flagellar operons, and an
increased sensitivity to UV and heat. Ap4A hydrolase
is important in responding to heat shock and oxidative
stress via regulating the concentration of Ap4A in
bacteria. Ap4A hydrolase is also thought to play a role
in siderophore production, but the mechanism by which
ApaH interacts with siderophore pathways in unknown.
The PPP (phosphoprotein phosphatase) family, to which
ApaH belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and PrpA/PrpB. The
PPP catalytic domain is defined by three conserved
motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme
family is ancient with members found in all eukaryotes,
and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 257
Score = 33.6 bits (78), Expect = 0.074
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 89 IFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHE 127
+GD V+RG SLETL + +L + L GNH+
Sbjct: 31 WLVGDLVNRGPDSLETLRFVKSLGDS--AKTVL--GNHD 65
>gnl|CDD|163664 cd07421, MPP_Rhilphs, Rhilph phosphatases, metallophosphatase
domain. Rhilphs (Rhizobiales/ Rhodobacterales/
Rhodospirillaceae-like phosphatases) are a
phylogenetically distinct group of PPP (phosphoprotein
phosphatases), found only in land plants. They are named
for their close relationship to to PPP phosphatases from
alpha-Proteobacteria, including Rhizobiales,
Rhodobacterales and Rhodospirillaceae. The PPP
(phosphoprotein phosphatase) family, to which the
Rhilphs belong, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and
ApA4 hydrolase. The PPP catalytic domain is defined by
three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-).
The PPP enzyme family is ancient with members found in
all eukaryotes, and in most bacterial and archeal
genomes. Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 304
Score = 33.6 bits (77), Expect = 0.097
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 89 IFMGDFVDRGYYSLETLTRLLTLKARWP-HRITLLRGNHE 127
IF+GD+ DRG + + + L++L + P R L GNH+
Sbjct: 39 IFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHD 78
>gnl|CDD|163667 cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain.
PrpA and PrpB are bacterial type I serine/threonine and
tyrosine phosphatases thought to modulate the expression
of proteins that protect the cell upon accumulation of
misfolded proteins in the periplasm. The PPP
(phosphoprotein phosphatase) family, to which PrpA and
PrpB belong, is one of two known protein phosphatase
families specific for serine and threonine. This family
also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP
catalytic domain is defined by three conserved motifs
(-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family
is ancient with members found in all eukaryotes, and in
most bacterial and archeal genomes. Dephosphorylation
of phosphoserines and phosphothreonines on target
proteins plays a central role in the regulation of many
cellular processes. PPPs belong to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 207
Score = 33.0 bits (76), Expect = 0.097
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 89 IFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHE 127
I +GD +DRG SL L LL W H + RGNHE
Sbjct: 33 ISVGDLIDRGPESLACL-ELLL--EPWFHAV---RGNHE 65
>gnl|CDD|163656 cd07413, MPP_PA3087, Pseudomonas aeruginosa PA3087 and related
proteins, metallophosphatase domain. PA3087 is an
uncharacterized protein from Pseudomonas aeruginosa with
a metallophosphatase domain that belongs to the
phosphoprotein phosphatase (PPP) family. The PPP family
also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5,
PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 222
Score = 33.0 bits (76), Expect = 0.11
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 84 PDTNYIFMGDFVDRGYYSLETLTRLLTL-KARWPHRITLLRGNHE 127
P+ +F+GD +DRG E L + ++ A H + ++ GNHE
Sbjct: 33 PERQVVFLGDLIDRGPEIRELLEIVKSMVDAG--HALAVM-GNHE 74
>gnl|CDD|173912 cd02156, nt_trans, nucleotidyl transferase superfamily. nt_trans
(nucleotidyl transferase) This superfamily includes the
class I amino-acyl tRNA synthetases, pantothenate
synthetase (PanC), ATP sulfurylase, and the
cytidylyltransferases, all of which have a conserved
dinucleotide-binding domain.
Length = 105
Score = 31.4 bits (71), Expect = 0.17
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 203 IHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAP 237
+HI H KLICRA + + + D V +W P
Sbjct: 11 LHIGHAKLICRAKGIADQCVVRIDDNPPVKVWQDP 45
>gnl|CDD|107154 PHA02239, PHA02239, putative protein phosphatase.
Length = 235
Score = 32.3 bits (73), Expect = 0.23
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 17/97 (17%)
Query: 84 PDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHES---RQITQV--YGFY 138
P+ +F+GD+VDRG S + + + L + + +TLL GNH+ + V Y
Sbjct: 29 PEETIVFLGDYVDRGKRSKDVVNYIFDLMSNDDNVVTLL-GNHDDEFYNIMENVDRLSIY 87
Query: 139 DECQTKYGNSNAW--KYCCKVFDFLTIAAVSAFCDLV 173
D W +YC + + ++ V+ V
Sbjct: 88 DI---------EWLSRYCIETLNSYGVSTVTLKYSSV 115
>gnl|CDD|234673 PRK00166, apaH, diadenosine tetraphosphatase; Reviewed.
Length = 275
Score = 31.7 bits (73), Expect = 0.37
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 89 IFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHE 127
+GD V+RG SLE L + +L L GNH+
Sbjct: 33 WLVGDLVNRGPDSLEVLRFVKSLGDS--AVTVL--GNHD 67
>gnl|CDD|163666 cd07423, MPP_PrpE, Bacillus subtilis PrpE and related proteins,
metallophosphatase domain. PrpE (protein phosphatase E)
is a bacterial member of the PPP (phosphoprotein
phosphatase) family of serine/threonine phosphatases and
a key signal transduction pathway component controlling
the expression of spore germination receptors GerA and
GerK in Bacillus subtilis. PrpE is closely related to
ApaH (also known symmetrical Ap(4)A hydrolase and
bis(5'nucleosyl)-tetraphosphatase). PrpE has
specificity for phosphotyrosine only, unlike the
serine/threonine phosphatases to which it is related.
The Bacilli members of this family are single domain
proteins while the other members have N- and C-terminal
domains in addition to this phosphatase domain. The PPP
(phosphoprotein phosphatase) family, to which PrpE
belongs, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/PrpB, and ApA4
hydrolase. The PPP catalytic domain is defined by three
conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The
PPP enzyme family is ancient with members found in all
eukaryotes, and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 234
Score = 30.7 bits (70), Expect = 0.60
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 89 IFMGDFVDRGYYSLETL 105
+F+GD VDRG S E L
Sbjct: 42 VFVGDLVDRGPDSPEVL 58
>gnl|CDD|236911 PRK11439, pphA, serine/threonine protein phosphatase 1;
Provisional.
Length = 218
Score = 30.5 bits (69), Expect = 0.85
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 89 IFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHE 127
I +GD +DRG SL L L+ W + RGNHE
Sbjct: 49 ISVGDLIDRGPQSLRCLQ---LLEEHWVRAV---RGNHE 81
>gnl|CDD|148668 pfam07199, DUF1411, Protein of unknown function (DUF1411). This
family represents a conserved region approximately 150
residues long that is sometimes repeated within some
Babesia bovis proteins of unknown function.
Length = 188
Score = 30.2 bits (68), Expect = 0.86
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 161 LTIAAV---SAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEF 202
L +A+V SAF VW+D AEV V + G F V ++
Sbjct: 19 LMLASVVVLSAFSGNVWADEAEVPQEPVEKKKEGGCFSWSVKEDY 63
>gnl|CDD|163668 cd07425, MPP_Shelphs, Shewanella-like phosphatases,
metallophosphatase domain. This family includes
bacterial, eukaryotic, and archeal proteins orthologous
to the Shewanella cold-active protein-tyrosine
phosphatase, CAPTPase. CAPTPase is an uncharacterized
protein that belongs to the Shelph (Shewanella-like
phosphatase) family of PPP (phosphoprotein
phosphatases). The PPP family is one of two known
protein phosphatase families specific for serine and
threonine. In addition to Shelps, the PPP family also
includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6,
PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase.
The PPP catalytic domain is defined by three conserved
motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme
family is ancient with members found in all eukaryotes,
and in most bacterial and archeal genomes.
Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 208
Score = 29.9 bits (68), Expect = 1.1
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 92 GDFVDRGYYSLETLTRLLTLK---ARWPHRITLLRGNHESRQI 131
GD DRG +E L L L+ A+ ++ L GNHE +
Sbjct: 40 GDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELMNL 82
>gnl|CDD|182173 PRK09968, PRK09968, serine/threonine-specific protein phosphatase
2; Provisional.
Length = 218
Score = 29.5 bits (66), Expect = 1.6
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 84 PDTNY-IFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHES 128
P+T+ I +GD +DRG SL L RLL W ++GNHE+
Sbjct: 41 PETDLLISVGDNIDRGPESLNVL-RLLN--QPW---FISVKGNHEA 80
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 28.6 bits (64), Expect = 4.1
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 96 DRGYYSLETLTRLLTLKA-RWPHRITLLRGN 125
++GY+ TLT +LT A R+P RI ++ G
Sbjct: 21 EKGYWQDRTLTDILTDHAARYPDRIAVIDGE 51
>gnl|CDD|190856 pfam04078, Rcd1, Cell differentiation family, Rcd1-like. Two of
the members in this family have been characterized as
being involved in regulation of Ste11 regulated sex
genes. Mammalian Rcd1 is a novel transcriptional
cofactor that mediates retinoic acid-induced cell
differentiation.
Length = 262
Score = 28.3 bits (64), Expect = 4.4
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 12/52 (23%)
Query: 6 NIMLQKYSF-----------YYKLTNLSGVEVSTVDSGSGETISYLTSSELI 46
+I L Y F Y +LT+L GV + V S E I++L S+E+I
Sbjct: 91 HIPLYLYPFLNTTSKSRPFEYLRLTSL-GVIGALVKSDDPEVINFLLSTEII 141
>gnl|CDD|222956 PHA02992, PHA02992, hypothetical protein; Provisional.
Length = 728
Score = 28.5 bits (64), Expect = 4.7
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 27 STVDSGSGETISYLTSSELISTQYITTASCCNPLYKESDVFFNFYDLEQLFRTGGQVP 84
S ++ S +SY S L +I S +PLY+ +F L + G VP
Sbjct: 137 SFINKESIYRMSYQFSESLTEKIFIQDYSMYDPLYEHQSFTSDF--LTDMLYKYGIVP 192
>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase. Members
of this protein family are the bacterial polynucleotide
kinase-phosphatase (Pnkp) whose genes occur paired with
genes for the 3' terminal RNA ribose
2'-O-methyltransferase Hen1. All members of the seed
alignment belong to a cassette with the Hen1. The pair
acts in bacterial RNA repair. This enzyme performs
end-healing reactions on broken RNA, preparing from the
RNA ligase to close the break. The working hypothesis is
that the combination of Pnkp (RNA repair) and Hen1 (RNA
modification) serves to first repair RNA damage from
ribotoxins and then perform a modification that prevents
the damage from recurring [Transcription, RNA
processing].
Length = 851
Score = 28.4 bits (64), Expect = 5.3
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
Query: 89 IFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHE--------SRQITQVYG 136
+F+GD VDRG S L RL+ + + GNH+ R + +G
Sbjct: 226 VFVGDLVDRGPDSPGVL-RLVMGMVAAGTALC-VPGNHDVKLLRALRGRNVKLTHG 279
>gnl|CDD|239624 cd03567, VHS_GGA, VHS domain family, GGA subfamily; GGA
(Golgi-localized, Gamma-ear-containing, Arf-binding)
comprise a subfamily of ubiquitously expressed,
monomeric, motif-binding cargo/clathrin adaptor
proteins. The VHS domain has a superhelical structure
similar to the structure of the ARM (Armadillo) repeats
and is present at the N-termini of proteins. GGA
proteins have a multidomain structure consisting of an
N-terminal VHS domain linked by a short proline-rich
linker to a GAT (GGA and TOM) domain, which is followed
by a long flexible linker to the C-terminal appendage,
GAE (gamma-adaptin ear) domain. The VHS domain of GGA
proteins binds to the acidic-cluster dileucine (DxxLL)
motif found on the cytoplasmic tails of cargo proteins
trafficked between the trans-Golgi network and the
endosomal system.
Length = 139
Score = 26.9 bits (60), Expect = 7.6
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 163 IAAVSAFCDLVWSDPAEVETWTVSPRGAGWLFGAKV 198
A+ AFC+ + +P P+ A L K+
Sbjct: 19 WEAIQAFCEQINKEPE-------GPQLAVRLLAHKI 47
>gnl|CDD|236482 PRK09361, radB, DNA repair and recombination protein RadB;
Provisional.
Length = 225
Score = 27.1 bits (61), Expect = 8.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 121 LLRGNHESRQITQVYG 136
LL G E ITQ+YG
Sbjct: 15 LLGGGFERGTITQIYG 30
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.439
Gapped
Lambda K H
0.267 0.0780 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,306,482
Number of extensions: 1301069
Number of successful extensions: 1069
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1049
Number of HSP's successfully gapped: 49
Length of query: 283
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 187
Effective length of database: 6,679,618
Effective search space: 1249088566
Effective search space used: 1249088566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.0 bits)