RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy248
(283 letters)
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic
subunit alpha isoform; protein-protein complex, heat
repeat, signaling protein; HET: OKA; 2.60A {Homo
sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C*
3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C*
2nyl_C*
Length = 309
Score = 371 bits (955), Expect = e-130
Identities = 120/248 (48%), Positives = 150/248 (60%), Gaps = 34/248 (13%)
Query: 70 FYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESR 129
F+DL +LFR GG+ PDTNY+FMGD+VDRGYYS+ET+T L+ LK R+ RIT+LRGNHESR
Sbjct: 62 FHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESR 121
Query: 130 QITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV----------------------- 166
QITQVYGFYDEC KYGN+N WKY +FD+L + A+
Sbjct: 122 QITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIR 181
Query: 167 -----------SAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAH 215
CDL+WSDP + W +SPRGAG+ FG ++ F H N L L+ RAH
Sbjct: 182 ALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAH 241
Query: 216 QLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQAVPNEERVIPD 275
QLV EGY + D N+VTI+SAPNYCYRCGN A+I++ + + F P
Sbjct: 242 QLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHVT 301
Query: 276 RVITPYFL 283
R YFL
Sbjct: 302 RRTPDYFL 309
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase,
toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN;
2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Length = 330
Score = 341 bits (876), Expect = e-118
Identities = 87/246 (35%), Positives = 126/246 (51%), Gaps = 36/246 (14%)
Query: 70 FYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESR 129
+YDL +LF GG P++NY+F+GD+VDRG SLET+ LL K ++P LLRGNHE
Sbjct: 69 YYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECA 128
Query: 130 QITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV----------------------- 166
I ++YGFYDEC+ +Y N WK F+ L IAA+
Sbjct: 129 SINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIR 187
Query: 167 -----------SAFCDLVWSDP-AEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRA 214
CDL+WSDP +V+ W + RG + FGA+V +F+H + L LICRA
Sbjct: 188 RIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRA 247
Query: 215 HQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQAVPNEERVIP 274
HQ+V +GY++ LVT++SAPNYC N +++ + + + + +
Sbjct: 248 HQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKNKGKYG 307
Query: 275 DRVITP 280
Sbjct: 308 QFSGLN 313
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 336 bits (864), Expect = e-116
Identities = 82/235 (34%), Positives = 112/235 (47%), Gaps = 38/235 (16%)
Query: 70 FYDLEQLFRTGGQVPDTN-YIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHES 128
FYDL +F G +TN YIF GDFVDRG +S+E + L K +P LLRGNHE+
Sbjct: 72 FYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHET 131
Query: 129 RQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV---------------------- 166
+ Q+YGF E + KY + ++ +VF++L +A
Sbjct: 132 DNMNQIYGFEGEVKAKY-TAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDD 190
Query: 167 -------------SAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICR 213
CDL+WSDP ++S RG FG VT F+ N+L I R
Sbjct: 191 IRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIR 250
Query: 214 AHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKF-NSVDNRTPALFQAVP 267
+H++ EGY+ G VT++SAPNYC + GN AS + S F AVP
Sbjct: 251 SHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVP 305
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit;
carbohydrate metabolism, cell cycle, cell division; HET:
1ZN; 1.63A {Homo sapiens} PDB: 3e7b_A* 3egg_A* 3egh_A*
3hvq_A 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A
2o8a_A 1u32_A* 1s70_A*
Length = 299
Score = 332 bits (853), Expect = e-115
Identities = 87/231 (37%), Positives = 125/231 (54%), Gaps = 36/231 (15%)
Query: 70 FYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESR 129
+YDL +LF GG P++NY+F+GD+VDRG SLET+ LL K ++P LLRGNHE
Sbjct: 68 YYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECA 127
Query: 130 QITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV----------------------- 166
I ++YGFYDEC+ +Y N WK F+ L IAA+
Sbjct: 128 SINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIR 186
Query: 167 -----------SAFCDLVWSDP-AEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRA 214
CDL+WSDP +V+ W + RG + FGA+V +F+H + L LICRA
Sbjct: 187 RIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLDLICRA 246
Query: 215 HQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQA 265
HQ+V +GY++ LVT++SAPNYC N +++ + + + +
Sbjct: 247 HQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKP 297
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 335 bits (862), Expect = e-114
Identities = 82/235 (34%), Positives = 112/235 (47%), Gaps = 38/235 (16%)
Query: 70 FYDLEQLFRTGGQVPDTN-YIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHES 128
FYDL +F G +TN YIF GDFVDRG +S+E + L K +P LLRGNHE+
Sbjct: 225 FYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHET 284
Query: 129 RQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV---------------------- 166
+ Q+YGF E + KY + ++ +VF++L +A
Sbjct: 285 DNMNQIYGFEGEVKAKY-TAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDGVTLDD 343
Query: 167 -------------SAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICR 213
CDL+WSDP ++S RG FG VT F+ N+L I R
Sbjct: 344 IRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIR 403
Query: 214 AHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKF-NSVDNRTPALFQAVP 267
+H++ EGY+ G VT++SAPNYC + GN AS + S F AVP
Sbjct: 404 SHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVP 458
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
structural genomics, PSI-2, protein structu initiative;
2.30A {Saccharomyces cerevisiae}
Length = 335
Score = 330 bits (848), Expect = e-114
Identities = 78/245 (31%), Positives = 110/245 (44%), Gaps = 48/245 (19%)
Query: 70 FYDLEQLFRTGGQV-PDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHES 128
FYD+ LFR G+V P Y+F GDFVDRG +S E LK P+ L RGNHES
Sbjct: 76 FYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLNRGNHES 135
Query: 129 RQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV---------------------- 166
+ ++YGF DEC+ KY + + + F+ L +A +
Sbjct: 136 DNMNKIYGFEDECKYKY-SQRIFNMFAQSFESLPLATLINNDYLVMHGGLPSDPSATLSD 194
Query: 167 -------------SAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICR 213
AF +L+W+DP E S RG G FG +T F+ N L+ I R
Sbjct: 195 FKNIDRFAQPPRDGAFMELLWADPQEANGMGPSQRGLGHAFGPDITDRFLRNNKLRKIFR 254
Query: 214 AHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPAL----------- 262
+H+L G ++ G L+T++SAPNYC GN+ ++ A
Sbjct: 255 SHELRMGGVQFEQKGKLMTVFSAPNYCDSQGNLGGVIHVVPGHGILQAGRNDDQNLIIET 314
Query: 263 FQAVP 267
F+AV
Sbjct: 315 FEAVE 319
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform;
protein-peptide docking, protein targeting, AKA
beta-augmentation, calmodulin-binding, membrane,
hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A*
1tco_A* 1mf8_A* 2jog_A
Length = 357
Score = 323 bits (829), Expect = e-110
Identities = 76/246 (30%), Positives = 112/246 (45%), Gaps = 50/246 (20%)
Query: 70 FYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESR 129
F+DL +LF GG +T Y+F+GD+VDRGY+S+E + L LK +P + LLRGNHE R
Sbjct: 82 FFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECR 141
Query: 130 QITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV----------------------- 166
+T+ + F EC+ KY + + C FD L +AA+
Sbjct: 142 HLTEYFTFKQECKIKY-SERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIR 200
Query: 167 -----------SAFCDLVWSDPAEVETW--------TVSPRGAGWLFGAKVTHEFIHINH 207
CD++WSDP E + RG + + EF+ N+
Sbjct: 201 KLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNN 260
Query: 208 LKLICRAHQLVHEGYKYMFDG------NLVTIWSAPNYCYRCGNIASILKFNSVDNRTPA 261
L I RAH+ GY+ +L+TI+SAPNY N A++LK+ + +
Sbjct: 261 LLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYEN-NVMNIR 319
Query: 262 LFQAVP 267
F P
Sbjct: 320 QFNCSP 325
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 320 bits (821), Expect = e-107
Identities = 77/246 (31%), Positives = 113/246 (45%), Gaps = 50/246 (20%)
Query: 70 FYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESR 129
F+DL +LF GG +T Y+F+GD+VDRGY+S+E + L LK +P + LLRGNHE R
Sbjct: 95 FFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECR 154
Query: 130 QITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV------------S---------- 167
+T+ + F EC+ KY + + C FD L +AA+ S
Sbjct: 155 HLTEYFTFKQECKIKY-SERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLDDIR 213
Query: 168 ------------AFCDLVWSDPAEVETW--------TVSPRGAGWLFGAKVTHEFIHINH 207
CD++WSDP E + RG + + EF+ N+
Sbjct: 214 KLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNN 273
Query: 208 LKLICRAHQLVHEGYKYMFDG------NLVTIWSAPNYCYRCGNIASILKFNSVDNRTPA 261
L I RAH+ GY+ +L+TI+SAPNY N A++LK+ + +
Sbjct: 274 LLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYEN-NVMNIR 332
Query: 262 LFQAVP 267
F P
Sbjct: 333 QFNCSP 338
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle,
hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Length = 342
Score = 55.6 bits (133), Expect = 4e-09
Identities = 27/223 (12%), Positives = 57/223 (25%), Gaps = 59/223 (26%)
Query: 69 NFYDLEQLFRTGGQVPD--------TNYIFMGDFVDRGYYSLETLTRLLTLKARWP---H 117
+ L L + + + + GD DRG+ E L + L +
Sbjct: 82 QYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNEVLWFMYQLDQQARDAGG 141
Query: 118 RITLLRGNHESRQITQVYGFYDECQ------TKYGNSNAWKYCCKVFDFL---------- 161
+ LL GNHE + + + + + ++ +L
Sbjct: 142 MVHLLMGNHEQMVLGGDLRYVHQRYDIATTLINRPYNKLYSADTEIGQWLRSKNTIIKIN 201
Query: 162 ------------------TIAAVSAF--------CDLVWSDPAEVETWTVSP----RGAG 191
T+ +A + +D + + RG
Sbjct: 202 DVLYMHGGISSEWISRELTLDKANALYRANVDASKKSLKADDLLNFLFFGNGPTWYRGYF 261
Query: 192 W-LFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTI 233
F + ++ I H E +F ++ +
Sbjct: 262 SETFTEAELDTILQHFNVNHIVVGHT-SQERVLGLFHNKVIAV 303
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 1e-05
Identities = 50/300 (16%), Positives = 97/300 (32%), Gaps = 83/300 (27%)
Query: 17 KLTNLSGVEVSTVD--SGSGETISYLTSSELISTQ----------YITTASCCNPLYKES 64
L L + +D GSG+T + +S + ++ +C +P E+
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTW--VALDVCLSYKVQCKMDFKIFWLNLKNCNSP---ET 197
Query: 65 DVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETL-TRLLTLKARWPHRITL-- 121
LE L + Q+ D N+ D + ++ L L P+ L
Sbjct: 198 V-------LEMLQKLLYQI-DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 122 LRGNHESRQITQVYGFYDECQ----TKYGNSNAWKYCCKVFDFLTIAAVSAFCDLVWSDP 177
L N ++ + + C+ T++ V DFL+ A +
Sbjct: 250 LL-NVQNAKAWNAFNL--SCKILLTTRFKQ---------VTDFLSAATTTHI-------S 290
Query: 178 AEVETWTVSPRGAGWLFGAKVT--------HEFIHIN--HLKLI---CRAHQLVHEGYKY 224
+ + T++P L K E + N L +I R + +K+
Sbjct: 291 LDHHSMTLTPDEVKSLL-LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 225 MFDGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQAVPNEERVIPDRV-ITPYFL 283
C + +I++ +S++ PA ++ + + V P I L
Sbjct: 350 ----------------VNCDKLTTIIE-SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Score = 27.9 bits (61), Expect = 4.9
Identities = 35/260 (13%), Positives = 77/260 (29%), Gaps = 76/260 (29%)
Query: 47 STQYITTASCCNPLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLT 106
+ I + + + D L + + + F+ + + Y
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE--EMVQKFVEEVLRINYK------ 92
Query: 107 RLLTLKARWPHRITLLRGNHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV 166
L + E RQ + + Y E + + N N +VF ++ +
Sbjct: 93 ---FLMSPI---------KTEQRQPSMMTRMYIEQRDRLYNDN------QVFAKYNVSRL 134
Query: 167 SAFCDLVWS----DPAE---VE-------TWTVS------------PRGAGWL-FGAKVT 199
+ L + PA+ ++ TW WL +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 200 HEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASI-LKFNSVDNR 258
E + + L+ + +Q+ PN+ R + ++I L+ +S+
Sbjct: 195 PETV-LEMLQKLL--YQID------------------PNWTSRSDHSSNIKLRIHSIQAE 233
Query: 259 TPALFQAVPNEER-VIPDRV 277
L ++ P E ++ V
Sbjct: 234 LRRLLKSKPYENCLLVLLNV 253
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr
protein phosphatase, ppase, manganese, sulfate, viral
protein; 2.15A {Enterobacteria phage lambda} SCOP:
d.159.1.3
Length = 221
Score = 43.6 bits (103), Expect = 2e-05
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 64 SDVFFNFYDLEQLFRTGGQVPDTN-YIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLL 122
D+ + +L T G + I +GD VDRG ++E L + R +
Sbjct: 19 GDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITFPWFRA------V 72
Query: 123 RGNHE 127
RGNHE
Sbjct: 73 RGNHE 77
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine
tetraphosphatase, monomer, PSI- 2, protein structure
initiative, nysgrc; 2.05A {Trypanosoma brucei}
Length = 262
Score = 40.8 bits (96), Expect = 2e-04
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 89 IFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHE 127
+ +GD V++G S + L L A + GNH+
Sbjct: 51 VAVGDLVNKGPDSFGVVRLLKRLGAY------SVLGNHD 83
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 7e-04
Identities = 28/207 (13%), Positives = 56/207 (27%), Gaps = 78/207 (37%)
Query: 32 GSGETISYL--------TSSELISTQYITTASCCNPLYKESDVFFNFY----DLEQLFRT 79
G G T Y T L+ +A + L + + + ++ +
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 80 GGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQITQVYGFYD 139
PD +Y LL++ P I ++ Q+ +
Sbjct: 222 PSNTPDKDY-------------------LLSIPISCP-LIGVI-------QLAH---YVV 251
Query: 140 ECQTKYGNSNAWKYCCKVFDFL---TIAA---VSAFCDLVWSDPAEVETW----TVSPRG 189
+ G + ++ +L T + V+A AE ++W +
Sbjct: 252 TAKL-LGFTPG-----ELRSYLKGATGHSQGLVTAVA------IAETDSWESFFVSVRKA 299
Query: 190 AGWLFGAKVTHEFIHINHLKLICRAHQ 216
LF I R ++
Sbjct: 300 ITVLF---------FIG-----VRCYE 312
Score = 36.6 bits (84), Expect = 0.008
Identities = 36/245 (14%), Positives = 65/245 (26%), Gaps = 87/245 (35%)
Query: 60 LYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLT-RLLTLKARWPHR 118
LYK S + ++ + D + +T +L + P
Sbjct: 1635 LYKTSKAAQD-------------------VW--NRADN--HFKDTYGFSILDIVINNPVN 1671
Query: 119 ITLLRGNHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAVSAFCDLVWSDPA 178
+T+ G + ++I + Y +T + K+F + + S +
Sbjct: 1672 LTIHFGGEKGKRIRENYSAMI-FETIVDGKLKTE---KIFKEINEHSTS----YTFRSEK 1723
Query: 179 EV--ETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSA 236
+ T P A E LK +G
Sbjct: 1724 GLLSATQFTQP--------ALTLMEKAAFEDLK---------SKGLI------------- 1753
Query: 237 PNYCYRCG----------NIASILKFNS----VDNRTPALFQAVPNEER---------VI 273
P G ++A ++ S V R + AVP +E +
Sbjct: 1754 PADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813
Query: 274 PDRVI 278
P RV
Sbjct: 1814 PGRVA 1818
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP:
d.159.1.5 PDB: 2gju_A
Length = 252
Score = 38.2 bits (88), Expect = 0.002
Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 72 DLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHE 127
+E++ G ++ Y +G+ V Y E + + L + + ++RG ++
Sbjct: 23 RIEEMREEGYEI--EKYYILGNIVGLFPYPKEVIEVIKDLTKK--ENVKIIRGKYD 74
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture,
hydrolase; 2.72A {Shigella flexneri 2A}
Length = 280
Score = 35.9 bits (82), Expect = 0.010
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 73 LEQLFRTGGQVPDTNY-IFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESRQI 131
L L P + GD V RG SL+ L + +L + L+ GNH+ +
Sbjct: 16 LIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLG----DSVRLVLGNHDLHLL 71
Query: 132 TQVYGFY 138
G
Sbjct: 72 AVFAGIS 78
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural
genomics, MCSG, Zn binding, hydrolase; 1.95A
{Sphaerobacter thermophilus}
Length = 246
Score = 34.3 bits (78), Expect = 0.025
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 64 SDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLR 123
SDV N LE + G+V + +GD V G E + + L +
Sbjct: 10 SDVHANLVALEAVLSDAGRV--DDIWSLGDIVGYGPRPRECVELVRVLAPN-----ISVI 62
Query: 124 GNHE 127
GNH+
Sbjct: 63 GNHD 66
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric
AP4A hydrolase, phosphodiesterase, binding, Mn2+
binding, hydrolase; 1.90A {Streptococcus pneumoniae}
PDB: 3qfn_A 3qfo_A*
Length = 270
Score = 34.3 bits (78), Expect = 0.031
Identities = 18/88 (20%), Positives = 25/88 (28%), Gaps = 5/88 (5%)
Query: 64 SDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLR 123
SD+ N LE + Q+ Y +GD + G L L L +
Sbjct: 18 SDIHGNTTALEAVLADARQLGVDEYWLLGDILMPGTGRRRILDLLDQLPI-----TARVL 72
Query: 124 GNHESRQITQVYGFYDECQTKYGNSNAW 151
GN E V D +
Sbjct: 73 GNWEDSLWHGVRKELDSTRPSQRYLLRQ 100
>2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid
synthase, drug complex, tetrahydrolipstatin,
transferase; HET: DH9; 2.30A {Homo sapiens}
Length = 316
Score = 34.1 bits (78), Expect = 0.037
Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 15/60 (25%)
Query: 184 TVSPRG----AGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNY 239
V P G AG+ +GA V E QL + +L +P Y
Sbjct: 100 QVQPEGPYRVAGYSYGACVAFEM-----------CSQLQAQQSPAPTHNSLFLFDGSPTY 148
>3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis,
hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A
{Homo sapiens} PDB: 1xkt_A
Length = 283
Score = 31.4 bits (71), Expect = 0.29
Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 15/60 (25%)
Query: 184 TVSPRG----AGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNY 239
V P G AG+ +GA V E QL + +L +P Y
Sbjct: 78 QVQPEGPYRVAGYSYGACVAFEM-----------CSQLQAQQSPAPTHNSLFLFDGSPTY 126
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria
monocytogenes}
Length = 443
Score = 31.3 bits (70), Expect = 0.34
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 89 IFMGDFVDRG-YYSLETLTRLLTLKARWPHRITLLRGNHESR 129
I GD + G S E L + LT + ++ ++ GNH+
Sbjct: 97 IISGDLTNNGEKTSHEELAKKLTQVEKNGTQVFVVPGNHDIN 138
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction
module, dimerization domain, transferase; 2.00A {Mus
musculus} SCOP: a.60.1.2
Length = 94
Score = 29.5 bits (66), Expect = 0.38
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 94 FVDRGYYSLETLTR-----LLTLKARWP-HRITLLRGNHESR-QITQVYG 136
F GY +LE + L + H+ +L R Q+ Q++G
Sbjct: 45 FTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRTQMQQMHG 94
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome
formation, non-canonical E1, ATP BI UBL, ATG8, ATG12,
ATG10, ATG3, UBL activation, thiolation; 1.91A
{Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Length = 340
Score = 30.0 bits (68), Expect = 0.91
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 7/41 (17%)
Query: 210 LICRAHQ--LVH-----EGYKYMFDGNLVTIWSAPNYCYRC 243
L+ +++ + Y M GN S CY C
Sbjct: 158 LLSNIENKTVINAALGFDSYLVMRHGNRDEQSSKQLGCYFC 198
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 29.1 bits (66), Expect = 2.0
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 10/57 (17%)
Query: 116 PHRITLLRGNHESRQITQVYGFYDECQTKYGNSNAWKY--CCKVFDFLTIAAVSAFC 170
+ I L I Q Y +CQ S KY +++ LTI FC
Sbjct: 316 ANEIRLKTEELSVEGIKQ---LYMDCQ-----SEEHKYNVLVELYGLLTIGQSIIFC 364
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 29.0 bits (64), Expect = 2.3
Identities = 11/89 (12%), Positives = 21/89 (23%), Gaps = 1/89 (1%)
Query: 3 SSPNIMLQKYSFYYKLTNLSGVEVSTVDSGSGE-TISYLTSSELISTQYITTASCCNPLY 61
S + Y + + +T I + +S L S Y + L
Sbjct: 592 HSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQ 651
Query: 62 KESDVFFNFYDLEQLFRTGGQVPDTNYIF 90
+ +P +Y
Sbjct: 652 AAQPFTIGDNKTYNGYWNTPLLPYKSYRI 680
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein
structure initi midwest center for structural genomics,
PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP:
d.159.1.8
Length = 195
Score = 28.1 bits (62), Expect = 2.3
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 84 PDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRGNHESR 129
P+ +GDF + L + P R L+ GNH+
Sbjct: 43 PEDTLYHLGDFT----WHFNDKNEYLRIWKALPGRKILVMGNHDKD 84
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc
binding, metal binding protein; 3.00A {Saccharomyces
cerevisiae} PDB: 3vh2_A
Length = 598
Score = 28.6 bits (64), Expect = 2.3
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 7/41 (17%)
Query: 210 LICRAHQ--LVH-----EGYKYMFDGNLVTIWSAPNYCYRC 243
L+ +++ + Y M GN S CY C
Sbjct: 451 LLSNIENKTVINAALGFDSYLVMRHGNRDEQSSKQLGCYFC 491
>1ioo_A SF11-RNAse; SELF-incompatibility ribonuclease, hydrolase; HET: NAG
BMA MAN; 1.55A {Nicotiana alata} SCOP: d.124.1.1
Length = 196
Score = 27.0 bits (59), Expect = 6.7
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 40 LTSSELISTQYITTASCCNPLYKESDVF------FNFYDLEQLFRTGGQVPDTNY 88
T QYI SCC Y ++ F + +DL + +T +P ++Y
Sbjct: 78 RTEQPSWKYQYIKHGSCCQKRYNQNTYFGLALRLKDKFDLLRTLQTHRIIPGSSY 132
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 7.3
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 160 FLTIAAVSAFCDLVWSDPAEVETWTVSPRGAGW 192
F+ ++ V AF +DP E+ +
Sbjct: 1015 FVLVSVVEAFIASGITDPYEMYKYVHVSEVGNC 1047
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.439
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,403,318
Number of extensions: 248879
Number of successful extensions: 590
Number of sequences better than 10.0: 1
Number of HSP's gapped: 567
Number of HSP's successfully gapped: 39
Length of query: 283
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 191
Effective length of database: 4,133,061
Effective search space: 789414651
Effective search space used: 789414651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.9 bits)