RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy248
(283 letters)
>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic
subunit alpha isoform, PP2A-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 232 bits (592), Expect = 3e-76
Identities = 119/243 (48%), Positives = 150/243 (61%), Gaps = 34/243 (13%)
Query: 59 PLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHR 118
P+ DV F+DL +LFR GG+ PDTNY+FMGD+VDRGYYS+ET+T L+ LK R+ R
Sbjct: 46 PVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRER 105
Query: 119 ITLLRGNHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV------------ 166
IT+LRGNHESRQITQVYGFYDEC KYGN+N WKY +FD+L + A+
Sbjct: 106 ITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIFCLHGGL 165
Query: 167 ----------------------SAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIH 204
CDL+WSDP + W +SPRGAG+ FG ++ F H
Sbjct: 166 SPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNH 225
Query: 205 INHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALFQ 264
N L L+ RAHQLV EGY + D N+VTI+SAPNYCYRCGN A+I++ + + F
Sbjct: 226 ANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMELDDTLKYSFLQFD 285
Query: 265 AVP 267
P
Sbjct: 286 PAP 288
>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 473
Score = 230 bits (587), Expect = 2e-73
Identities = 77/253 (30%), Positives = 114/253 (45%), Gaps = 50/253 (19%)
Query: 65 DVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLRG 124
D+ F+DL +LF GG +T Y+F+GD+VDRGY+S+E + L LK +P + LLRG
Sbjct: 77 DIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRG 136
Query: 125 NHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV------------------ 166
NHE R +T+ + F EC+ KY + C FD L +AA+
Sbjct: 137 NHECRHLTEYFTFKQECKIKYSE-RVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINT 195
Query: 167 ----------------SAFCDLVWSDPAE--------VETWTVSPRGAGWLFGAKVTHEF 202
CD++WSDP E + RG + + EF
Sbjct: 196 LDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEF 255
Query: 203 IHINHLKLICRAHQLVHEGYKYMFDG------NLVTIWSAPNYCYRCGNIASILKFNSVD 256
+ N+L I RAH+ GY+ +L+TI+SAPNY N A++LK+ + +
Sbjct: 256 LQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYEN-N 314
Query: 257 NRTPALFQAVPNE 269
F P+
Sbjct: 315 VMNIRQFNCSPHP 327
>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 220 bits (562), Expect = 3e-71
Identities = 83/240 (34%), Positives = 113/240 (47%), Gaps = 38/240 (15%)
Query: 65 DVFFNFYDLEQLFRTGGQVPDTN-YIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLR 123
D FYDL +F G +TN YIF GDFVDRG +S+E + L K +P LLR
Sbjct: 67 DTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLR 126
Query: 124 GNHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAVSA--------------- 168
GNHE+ + Q+YGF E + KY + ++ +VF++L +A
Sbjct: 127 GNHETDNMNQIYGFEGEVKAKY-TAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSEDG 185
Query: 169 --------------------FCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIHINHL 208
CDL+WSDP ++S RG FG VT F+ N+L
Sbjct: 186 VTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNL 245
Query: 209 KLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFNSVD-NRTPALFQAVP 267
I R+H++ EGY+ G VT++SAPNYC + GN AS + D F AVP
Sbjct: 246 DYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVP 305
>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo
sapiens), beta isoform [TaxId: 9606]}
Length = 294
Score = 211 bits (537), Expect = 6e-68
Identities = 90/242 (37%), Positives = 128/242 (52%), Gaps = 36/242 (14%)
Query: 59 PLYKESDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHR 118
PL D+ +YDL +LF GG P++NY+F+GD+VDRG SLET+ LL K ++P
Sbjct: 53 PLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPEN 112
Query: 119 ITLLRGNHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAV------------ 166
LLRGNHE I ++YGFYDEC+ +Y N WK F+ L IAA+
Sbjct: 113 FFLLRGNHECASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGL 171
Query: 167 ----------------------SAFCDLVWSDPAE-VETWTVSPRGAGWLFGAKVTHEFI 203
CDL+WSDP + V W + RG + FGA+V +F+
Sbjct: 172 SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVLGWGENDRGVSFTFGAEVVAKFL 231
Query: 204 HINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFNSVDNRTPALF 263
H + L LICRAHQ+V +GY++ LVT++SAPNYC N +++ + + +
Sbjct: 232 HKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQIL 291
Query: 264 QA 265
+
Sbjct: 292 KP 293
>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 251
Score = 48.1 bits (113), Expect = 3e-07
Identities = 21/193 (10%), Positives = 46/193 (23%), Gaps = 12/193 (6%)
Query: 64 SDVFFNFYDLEQL-----FRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHR 118
+++ N L Y +G+ V Y E + + L
Sbjct: 7 ANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTK--KEN 64
Query: 119 ITLLRGNHESRQITQVYGFYDECQTK--YGNSNAWKYCCKVFDFLTIAAVSAFCDLVWSD 176
+ ++RG ++ D + K ++ L DL
Sbjct: 65 VKIIRGKYDQIIAMSDPHATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYL 124
Query: 177 PAEVETWTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSA 236
++ V + + A + Y+ + + + A
Sbjct: 125 VDKIGGNEVFGVYGSPI---NPFDGEVLAEQPTSYYEAIMRPVKDYEMLIVASPMYPVDA 181
Query: 237 PNYCYRCGNIASI 249
R S+
Sbjct: 182 MTRYGRVVCPGSV 194
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase
{Bacteriophage lambda [TaxId: 10710]}
Length = 219
Score = 39.8 bits (92), Expect = 1e-04
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 64 SDVFFNFYDLEQLFRTGGQVPDTN-YIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLL 122
D+ + +L T G + I +GD VDRG ++E L+ +
Sbjct: 19 GDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVE------CLELITFPWFRAV 72
Query: 123 RGNHESRQITQVYGFYDEC 141
RGNHE I + +
Sbjct: 73 RGNHEQMMIDGLSERGNVN 91
>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli
[TaxId: 562]}
Length = 184
Score = 37.6 bits (86), Expect = 6e-04
Identities = 14/112 (12%), Positives = 34/112 (30%), Gaps = 4/112 (3%)
Query: 64 SDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLT----RLLTLKARWPHRI 119
SD+ + E++ Q + +GD ++ G + +++ H++
Sbjct: 8 SDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKV 67
Query: 120 TLLRGNHESRQITQVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAVSAFCD 171
+RGN +S + F + + + A
Sbjct: 68 IAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFLTHGHLFGPENLPALNQ 119
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus
thermophilus [TaxId: 274]}
Length = 228
Score = 32.4 bits (72), Expect = 0.043
Identities = 16/185 (8%), Positives = 43/185 (23%), Gaps = 9/185 (4%)
Query: 64 SDVFFNFYDLEQLFRTGGQVPDTNYIFMGDFVDRGYYSLETLTRLLTLKARWPHRITLLR 123
S+ + LE+ + +G+ + + S + L +
Sbjct: 12 SNPMGDLEALEKFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEA-HLPTAYVP 70
Query: 124 GNHESRQIT-QVYGFYDECQTKYGNSNAWKYCCKVFDFLTIAAVSAFCDLVWSDPAEVET 182
G ++ E + + +L D + E
Sbjct: 71 GPQDAPIWEYLREAANVELVHPEMRNVHETFTFWRGPYLVAGVGGEIADEGEPEEHEALR 130
Query: 183 WTVSPRGAGWLFGAKVTHEFIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYR 242
+ W+ ++ + ++ K+ H+G + + N
Sbjct: 131 YP------AWVAEYRLKALWELKDYPKIFLFHTMPYHKGLNEQGSHEVAHLIKTHNPLLV 184
Query: 243 -CGNI 246
Sbjct: 185 LVAGK 189
>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Thermotoga maritima [TaxId: 2336]}
Length = 157
Score = 26.4 bits (57), Expect = 2.5
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 203 IHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRC 243
I + H+ +I RA + E + + +
Sbjct: 12 ITLGHVDIIKRALSIFDELVVLVTENPRKKCMFTLEERKKL 52
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein,
GcvT {Thermotoga maritima [TaxId: 2336]}
Length = 83
Score = 25.5 bits (56), Expect = 3.0
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 208 LKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCG-NIA 247
L+L + + +GY+ + +G V ++ N+ G +IA
Sbjct: 6 LELSGKR--IARKGYEVLKNGERVGEITSGNFSPTLGKSIA 44
>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 26.7 bits (58), Expect = 3.6
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 203 IHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNY 239
I HL+L A ++ +Y ++ Y
Sbjct: 16 ITNMHLRLFELAKDYMNGTGRYTVVKGII-SPVGDAY 51
>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 126
Score = 25.6 bits (55), Expect = 4.7
Identities = 11/56 (19%), Positives = 16/56 (28%)
Query: 202 FIHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRCGNIASILKFNSVDN 257
+H H+KL+ RA QL + Y + VD
Sbjct: 12 LLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETIRYVDE 67
>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Thermus thermophilus [TaxId: 274]}
Length = 160
Score = 25.7 bits (55), Expect = 5.1
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 203 IHINHLKLICRAHQLVHEGYKYMFDGNLVTIWSAPNYCYRC 243
+ HL +I RA +L + + + + R
Sbjct: 12 LTNGHLDVIQRASRLFEKVTVAVLENPSKRGQYLFSAEERL 52
>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId:
2261]}
Length = 333
Score = 26.2 bits (56), Expect = 5.5
Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 6/143 (4%)
Query: 89 IFMGDFVDRGYYSLETLTRL---LTLKARWPHRITLLRGNHE-SRQITQVYGFYDECQTK 144
+ GD S TL + L + + + GNH+ +++ V ++
Sbjct: 45 LIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEGNHDRTQRGPSVLNLLEDFGLV 104
Query: 145 YGNSNAWKYCCKVFDFLTIAAVSAFCDLVWSDPAEVETWTVSPRGAGWLFGAKVTHEFIH 204
Y + + + LV ++E + + W K + +
Sbjct: 105 YVIGMRKEKVENEYLTSERLGNGEY--LVKGVYKDLEIHGMKYMSSAWFEANKEILKRLF 162
Query: 205 INHLKLICRAHQLVHEGYKYMFD 227
I HQ V E + +
Sbjct: 163 RPTDNAILMLHQGVREVSEARGE 185
>d1iqqa_ d.124.1.1 (A:) S3-RNase {Japanese pear (Pyrus pyrifolia)
[TaxId: 3767]}
Length = 200
Score = 25.5 bits (55), Expect = 7.6
Identities = 7/66 (10%), Positives = 20/66 (30%), Gaps = 9/66 (13%)
Query: 41 TSSELISTQYITTASCCNPLYKESDVFFNF---------YDLEQLFRTGGQVPDTNYIFM 91
++ +++ SC P + +F ++ ++ PD +
Sbjct: 76 KNNLFWDKEWMKHGSCGYPTIDNENHYFETVIKMYISKKQNVSRILSKAKIEPDGKKRAL 135
Query: 92 GDFVDR 97
D +
Sbjct: 136 LDIENA 141
>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 157
Score = 24.9 bits (53), Expect = 9.1
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 203 IHINHLKLICRAHQLVHEGYKYMFDGN 229
+ + H+ + RA E +
Sbjct: 13 VTLGHVDIFERAAAQFDEVVVAILVNP 39
>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 167
Score = 24.8 bits (53), Expect = 9.8
Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 4/84 (4%)
Query: 203 IHINHLKLICRAHQLVHEGYKYMFDGN----LVTIWSAPNYCYRCGNIASILKFNSVDNR 258
H HL++I + V E + + ++A S +
Sbjct: 12 FHRGHLQVIKSILEEVDELIICIGSAQLSHSIRDPFTAGERVMMLTKALSENGIPASRYY 71
Query: 259 TPALFQAVPNEERVIPDRVITPYF 282
+ N V +++TP F
Sbjct: 72 IIPVQDIECNALWVGHIKMLTPPF 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.439
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,109,278
Number of extensions: 50882
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 33
Length of query: 283
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 199
Effective length of database: 1,254,276
Effective search space: 249600924
Effective search space used: 249600924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.2 bits)