BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2480
(337 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P996|PDXD1_HUMAN Pyridoxal-dependent decarboxylase domain-containing protein 1
OS=Homo sapiens GN=PDXDC1 PE=1 SV=2
Length = 788
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 165 SMQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGL 224
S + +K ALP+W +L+ +G G + + L + +++ L + ++IL
Sbjct: 329 SNKPTDKLRALPLWLSLQYLGLDGFVERIKHACQLSQRLQESLKKVNYIKILVE------ 382
Query: 225 GLKEVTSQYLPVQTILESVQSCVVFQFVP----KDAGWGPVPAYYDKLNSWLGQILQRDV 280
E++S + + E S VF+ VP +G G D LN WLG+ L++ V
Sbjct: 383 --DELSSPVVVFRFFQELPGSDPVFKAVPVPNMTPSGVGRERHSCDALNRWLGEQLKQLV 440
Query: 281 PSVSLNLTETAAFGTVLRICPFECSS-----GGDYESFLVCLDAQV 321
P+ L + + A GT LR P ++ G D + + C+++++
Sbjct: 441 PASGLTVMDLEAEGTCLRFSPLMTAAVLGTRGEDVDQLVACIESKL 486
>sp|Q99K01|PDXD1_MOUSE Pyridoxal-dependent decarboxylase domain-containing protein 1
OS=Mus musculus GN=Pdxdc1 PE=1 SV=2
Length = 787
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 17/166 (10%)
Query: 165 SMQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGL 224
S + +K ALP+W +L+ +G GI + + L + +++ L + ++IL
Sbjct: 329 SNKPADKLRALPLWLSLQYLGLDGIVERIKHACHLSQRLQESLKKVDHIKILVE------ 382
Query: 225 GLKEVTSQYLPVQTILESVQSCVVFQFVP----KDAGWGPVPAYYDKLNSWLGQILQRDV 280
E++S + + E S F+ VP A G D LN WLG+ L++ V
Sbjct: 383 --DELSSPVVVFRFFQELPASDSAFKAVPVSNIAPAAVGRERHSCDALNRWLGEQLKQLV 440
Query: 281 PSVSLNLTETAAFGTVLRICPFECSS-----GGDYESFLVCLDAQV 321
P L + + GT +R P + G D + + C+ +++
Sbjct: 441 PQCGLTVIDLEVDGTCVRFSPLMTAEGLGTRGEDVDQLITCIQSKL 486
>sp|Q6DF78|PDXD1_XENLA Pyridoxal-dependent decarboxylase domain-containing protein 1
OS=Xenopus laevis GN=pdxdc1 PE=2 SV=1
Length = 782
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 70/170 (41%), Gaps = 36/170 (21%)
Query: 165 SMQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGL 224
S Q EK ALP+W +L+ +G +GI VE I+ H
Sbjct: 331 SSQPVEKLRALPLWLSLQYLGHSGI----------VERIK-------------HASQLSQ 367
Query: 225 GLKEVTSQYLPVQTILESVQS--CVVFQFV----PKDA--GWGPVPAYYDKLNSWLGQIL 276
L E PV+T +E+ S VVF+FV D+ + D LN WLG L
Sbjct: 368 KLLENLKNLSPVKTPVENDGSSPVVVFRFVYEGCKSDSTLNLSTIERDSDALNQWLGDQL 427
Query: 277 QRDVPSVSLNLTETAAFGTVLRICPF-ECS----SGGDYESFLVCLDAQV 321
VPS +++ E GT +R P C+ + D E + CL ++
Sbjct: 428 AALVPSSGVDIVELEDEGTCVRFNPLMTCAVLGTTAEDVEQLVACLRMKI 477
>sp|Q6P474|PDXD2_HUMAN Putative pyridoxal-dependent decarboxylase domain-containing
protein 2 OS=Homo sapiens GN=PDXDC2P PE=5 SV=3
Length = 469
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 12/148 (8%)
Query: 164 LSMQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSG 223
+S + +K ALP+W +L+ +G G + + L + +++ L + ++IL
Sbjct: 327 ISNKPTDKLRALPLWLSLQYLGLDGFVERIKHACQLSQWLQESLKKVNYIKILVE----- 381
Query: 224 LGLKEVTSQYLPVQTILESVQSCVVFQFVP----KDAGWGPVPAYYDKLNSWLGQILQRD 279
E++S + + E S VF+ VP + G D LN WLG+ L++
Sbjct: 382 ---DELSSPVVVFRFFQELPGSDPVFKAVPVPNMTPSAVGRERHSCDALNLWLGEQLKQL 438
Query: 280 VPSVSLNLTETAAFGTVLRICPFECSSG 307
VP+ L + + A GT LR P ++G
Sbjct: 439 VPASGLTVMDLEAEGTCLRFSPLMTAAG 466
>sp|Q66HY8|PDXD1_DANRE Pyridoxal-dependent decarboxylase domain-containing protein 1
OS=Danio rerio GN=pdxdc1 PE=2 SV=1
Length = 751
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 64/150 (42%), Gaps = 35/150 (23%)
Query: 165 SMQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESIRQ--KLSEYPCLRILSHGPVS 222
S Q EK ALP+W +L+ +G GI VE I+ +LS+ ++L H
Sbjct: 313 SSQPVEKLRALPLWLSLQYLGHDGI----------VERIKHASQLSQ----QLLEH---- 354
Query: 223 GLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAG---WGPVPAYY-------DKLNSWL 272
LK + S V+ L S VVF+F +++ G V Y D N WL
Sbjct: 355 ---LKTLASIKTSVEDELNS--PVVVFRFSHENSAPSSGGSVEGSYAGERDILDAFNRWL 409
Query: 273 GQILQRDVPSVSLNLTETAAFGTVLRICPF 302
G L VP +++ E GT +R P
Sbjct: 410 GDQLAEQVPLSGVDVVELEDEGTCVRFSPL 439
>sp|A7MBC2|PDXD1_BOVIN Pyridoxal-dependent decarboxylase domain-containing protein 1
OS=Bos taurus GN=PDXDC1 PE=2 SV=1
Length = 787
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 43/179 (24%)
Query: 165 SMQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGL 224
S + +K ALP+W +L+ +G GI + + L + +++ L + ++IL +S
Sbjct: 330 SNKPADKLRALPLWLSLQYLGLDGIVERIKHACQLSQRLQESLKKVNHIKILVEDELSS- 388
Query: 225 GLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGP-----------------VPAYYDK 267
PV VVF+F + G P D
Sbjct: 389 ----------PV----------VVFRFFQELPGSDPGLNAIPAPSAAASAVGRERHSCDA 428
Query: 268 LNSWLGQILQRDVPSVSLNLTETAAFGTVLRICPFECSS-----GGDYESFLVCLDAQV 321
LN WLG+ L++ VP L + + GT +R P ++ G D + + C+ +++
Sbjct: 429 LNRWLGEQLKQLVPMSGLTVMDLEVEGTCVRFSPLMTAAVLGTRGEDVDQLVACVQSKL 487
>sp|P71362|DDC_HAEIN L-2,4-diaminobutyrate decarboxylase OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ddc PE=1
SV=1
Length = 511
Score = 35.4 bits (80), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 38/159 (23%)
Query: 27 SMQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILSHGPVSGM 86
S+QT + AL +W TL+++G+ ++ L + V Q +++ P L +L
Sbjct: 366 SLQTTRRFDALKLWFTLEALGEDLYASMIDHGVKLTKEVEQYINDTPDLEML-------- 417
Query: 87 GLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWYTFYTFISSLLCSDAGWGPVPAYYDK 146
V SQ+ + V+F+ VPKD FI +L + +
Sbjct: 418 ----VPSQF-----------ASVLFRVVPKDYP----AEFIDAL-----NQNVADELFAR 453
Query: 147 LNSWLGFTNIGDDLS------TPLSMQTNEKAIALPVWT 179
+ +G T +GD S +P++ N KA+ V T
Sbjct: 454 GEANIGVTKVGDKQSLKMTTLSPIATLENVKALLTQVLT 492
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 40/143 (27%)
Query: 113 FVPKDAGWYTFYTFISSLLCSDAGWGPVPAYYDKLNSWLGFTNIGDDLSTPLSMQTNEKA 172
F+ KD Y F + + L S+ YD+ + G N+ S+QT +
Sbjct: 331 FLLKDPENYRFIDYKADYLNSE---------YDEAH---GVPNL-----VAKSLQTTRRF 373
Query: 173 IALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQ 232
AL +W TL+++G+ ++ L + + Q +++ P L +L V SQ
Sbjct: 374 DALKLWFTLEALGEDLYASMIDHGVKLTKEVEQYINDTPDLEML------------VPSQ 421
Query: 233 YLPVQTILESVQSCVVFQFVPKD 255
+ + V+F+ VPKD
Sbjct: 422 F-----------ASVLFRVVPKD 433
>sp|O65479|CRK20_ARATH Putative cysteine-rich receptor-like protein kinase 20
OS=Arabidopsis thaliana GN=CRK20 PE=2 SV=2
Length = 666
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 26/124 (20%)
Query: 16 TNIGDDLSTPLSMQTNEKAI--ALPVWTTLKSMGQTGIQDILTFNF-SLVESVRQKLSEY 72
T GDD++T S+Q + KAI A ++ + +GQ G ++ F S V+ ++LS+
Sbjct: 318 TTDGDDITTAGSLQFDFKAIVAATDIFLPINKLGQGGFGEVYKGTFPSGVQVAVKRLSKN 377
Query: 73 PCLRILSHGPVSGMGLKEVTSQYLPVQTI------------LESVQSCVVFQFVPKDAGW 120
SG G KE ++ + V + LE + +V++FVP +
Sbjct: 378 -----------SGQGEKEFENEVVVVAKLQHRNLVKLLGYCLEGEEKILVYEFVPNKSLD 426
Query: 121 YTFY 124
Y +
Sbjct: 427 YFLF 430
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,226,847
Number of Sequences: 539616
Number of extensions: 4934107
Number of successful extensions: 9138
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9120
Number of HSP's gapped (non-prelim): 16
length of query: 337
length of database: 191,569,459
effective HSP length: 118
effective length of query: 219
effective length of database: 127,894,771
effective search space: 28008954849
effective search space used: 28008954849
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)