Query psy2480
Match_columns 337
No_of_seqs 139 out of 157
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 17:21:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0630|consensus 100.0 9.5E-40 2.1E-44 326.8 12.8 277 30-330 391-715 (838)
2 KOG0630|consensus 100.0 7.7E-35 1.7E-39 291.7 9.3 209 124-332 330-590 (838)
3 PLN02590 probable tyrosine dec 99.8 7.9E-20 1.7E-24 188.8 17.4 161 136-326 342-535 (539)
4 PLN02880 tyrosine decarboxylas 99.8 2.8E-17 6.1E-22 167.9 17.7 160 136-325 294-486 (490)
5 TIGR03799 NOD_PanD_pyr putativ 99.5 6.4E-14 1.4E-18 144.6 14.0 152 138-315 322-517 (522)
6 KOG0628|consensus 99.4 1.1E-12 2.3E-17 132.2 14.2 130 161-327 344-475 (511)
7 TIGR01788 Glu-decarb-GAD gluta 99.2 2.2E-10 4.8E-15 115.9 12.7 129 165-324 299-430 (431)
8 TIGR03811 tyr_de_CO2_Ent tyros 99.0 6.6E-09 1.4E-13 109.4 15.8 161 136-322 370-601 (608)
9 PF00282 Pyridoxal_deC: Pyrido 98.9 1.6E-09 3.5E-14 107.5 5.9 94 136-252 249-373 (373)
10 COG0076 GadB Glutamate decarbo 98.7 5.2E-08 1.1E-12 99.7 9.9 125 173-324 324-450 (460)
11 cd06450 DOPA_deC_like DOPA dec 98.4 3.5E-06 7.5E-11 80.3 12.7 136 139-319 206-344 (345)
12 PLN02263 serine decarboxylase 98.2 1.2E-05 2.6E-10 82.8 11.1 134 139-323 291-443 (470)
13 PLN03032 serine decarboxylase; 98.1 1.8E-05 3.9E-10 79.1 10.7 129 139-319 224-372 (374)
14 PRK02769 histidine decarboxyla 97.9 9.6E-05 2.1E-09 73.9 11.1 131 139-322 221-371 (380)
15 PLN02590 probable tyrosine dec 97.7 6.8E-05 1.5E-09 78.4 6.4 68 27-117 402-469 (539)
16 PF00282 Pyridoxal_deC: Pyrido 97.7 6.3E-05 1.4E-09 74.9 5.8 63 29-114 311-373 (373)
17 KOG0629|consensus 97.7 0.0002 4.3E-09 72.9 9.1 137 166-323 369-509 (510)
18 PLN02880 tyrosine decarboxylas 97.3 0.00034 7.4E-09 72.2 6.2 67 28-117 355-421 (490)
19 TIGR00461 gcvP glycine dehydro 97.2 0.0033 7.1E-08 69.8 12.1 129 167-326 738-870 (939)
20 PRK05367 glycine dehydrogenase 97.0 0.0077 1.7E-07 67.2 13.2 123 173-326 756-878 (954)
21 PRK13520 L-tyrosine decarboxyl 96.9 0.015 3.2E-07 56.1 12.5 105 173-321 265-369 (371)
22 PRK04366 glycine dehydrogenase 96.6 0.022 4.8E-07 58.5 11.6 117 174-326 332-451 (481)
23 TIGR03799 NOD_PanD_pyr putativ 96.2 0.0095 2.1E-07 62.3 6.6 66 29-117 376-441 (522)
24 TIGR03812 tyr_de_CO2_Arch tyro 96.1 0.088 1.9E-06 50.8 12.3 104 172-319 269-372 (373)
25 PRK10874 cysteine sulfinate de 95.8 0.18 4E-06 49.6 13.3 104 181-324 286-399 (401)
26 PLN03032 serine decarboxylase; 95.7 0.02 4.4E-07 57.4 6.0 52 24-78 268-319 (374)
27 TIGR01788 Glu-decarb-GAD gluta 95.4 0.033 7.2E-07 56.9 6.7 61 35-117 308-368 (431)
28 PRK02769 histidine decarboxyla 95.3 0.028 6E-07 56.4 5.4 47 31-78 270-316 (380)
29 TIGR01979 sufS cysteine desulf 95.2 0.29 6.4E-06 48.0 12.3 111 178-324 282-402 (403)
30 TIGR01977 am_tr_V_EF2568 cyste 95.2 0.27 5.8E-06 47.5 11.7 106 179-319 258-375 (376)
31 TIGR03392 FeS_syn_CsdA cystein 95.0 0.44 9.4E-06 46.9 13.0 107 178-324 280-396 (398)
32 PRK00451 glycine dehydrogenase 95.0 0.26 5.7E-06 49.4 11.4 107 177-320 338-445 (447)
33 PLN02263 serine decarboxylase 94.8 0.057 1.2E-06 56.0 6.3 44 34-78 343-386 (470)
34 PLN02855 Bifunctional selenocy 94.7 0.37 8E-06 48.0 11.7 107 186-325 304-420 (424)
35 PRK03080 phosphoserine aminotr 94.6 0.25 5.4E-06 48.9 9.9 108 188-327 269-377 (378)
36 TIGR03811 tyr_de_CO2_Ent tyros 94.4 0.079 1.7E-06 56.6 6.4 69 34-117 435-505 (608)
37 COG0076 GadB Glutamate decarbo 94.2 0.096 2.1E-06 54.1 6.4 68 24-116 315-382 (460)
38 cd00613 GDC-P Glycine cleavage 94.1 0.3 6.6E-06 47.6 9.3 105 175-317 292-398 (398)
39 cd06453 SufS_like Cysteine des 94.1 0.44 9.4E-06 46.1 10.2 106 174-317 258-373 (373)
40 cd06451 AGAT_like Alanine-glyo 93.7 1.4 3E-05 42.3 13.0 105 179-320 247-354 (356)
41 PRK09295 bifunctional cysteine 93.6 1.1 2.3E-05 44.4 12.2 96 188-322 298-403 (406)
42 TIGR01366 serC_3 phosphoserine 92.9 0.92 2E-05 44.8 10.6 101 188-323 258-360 (361)
43 TIGR03403 nifS_epsilon cystein 92.4 1.6 3.6E-05 42.6 11.5 33 294-326 346-378 (382)
44 cd06450 DOPA_deC_like DOPA dec 92.2 0.38 8.2E-06 45.9 6.5 43 36-78 231-273 (345)
45 TIGR01364 serC_1 phosphoserine 91.8 1.8 4E-05 42.7 11.1 96 188-321 248-346 (349)
46 PLN02409 serine--glyoxylate am 91.4 3.3 7.2E-05 41.3 12.5 103 187-325 269-374 (401)
47 TIGR01976 am_tr_V_VC1184 cyste 91.3 1.9 4.1E-05 42.1 10.6 93 189-317 292-397 (397)
48 cd06502 TA_like Low-specificit 91.0 2.1 4.6E-05 40.5 10.2 141 140-319 187-337 (338)
49 PF00266 Aminotran_5: Aminotra 90.9 1.8 3.9E-05 42.1 10.0 91 187-313 271-371 (371)
50 TIGR02006 IscS cysteine desulf 90.4 1.7 3.7E-05 43.0 9.4 33 294-326 348-380 (402)
51 TIGR01814 kynureninase kynuren 90.3 3.9 8.4E-05 40.6 11.8 96 187-321 305-405 (406)
52 TIGR03402 FeS_nifS cysteine de 90.2 4.5 9.8E-05 39.4 12.0 102 187-326 251-375 (379)
53 COG0520 csdA Selenocysteine ly 90.2 5.3 0.00011 40.7 12.8 106 188-322 297-404 (405)
54 PLN02721 threonine aldolase 89.9 3.8 8.3E-05 39.0 11.1 96 187-322 254-351 (353)
55 PLN02414 glycine dehydrogenase 89.9 4 8.7E-05 46.3 12.6 117 178-326 793-910 (993)
56 KOG1383|consensus 88.3 0.93 2E-05 47.1 5.8 43 175-217 338-380 (491)
57 TIGR02326 transamin_PhnW 2-ami 87.2 11 0.00024 36.5 12.3 96 189-321 262-360 (363)
58 cd00611 PSAT_like Phosphoserin 86.5 6.6 0.00014 38.5 10.5 95 188-320 256-353 (355)
59 TIGR03301 PhnW-AepZ 2-aminoeth 86.4 7.1 0.00015 37.0 10.4 96 189-320 257-354 (355)
60 PRK13479 2-aminoethylphosphona 85.8 16 0.00035 35.3 12.7 101 189-325 263-365 (368)
61 PRK05367 glycine dehydrogenase 85.5 4.5 9.7E-05 45.7 9.7 94 181-318 344-437 (954)
62 PRK12566 glycine dehydrogenase 84.1 16 0.00035 41.4 13.1 118 175-325 760-878 (954)
63 PRK05355 3-phosphoserine/phosp 83.3 9.7 0.00021 37.7 10.1 96 188-321 259-356 (360)
64 cd06452 SepCysS Sep-tRNA:Cys-t 82.5 29 0.00062 33.7 12.9 102 188-321 258-360 (361)
65 TIGR03531 selenium_SpcS O-phos 82.1 10 0.00022 39.3 10.0 79 139-217 263-354 (444)
66 PLN02452 phosphoserine transam 82.0 9.9 0.00021 38.1 9.6 99 188-322 263-362 (365)
67 PRK13520 L-tyrosine decarboxyl 80.4 3.7 8E-05 39.5 5.8 44 34-78 264-307 (371)
68 TIGR00709 dat 2,4-diaminobutyr 79.3 24 0.00052 35.9 11.6 45 284-328 396-440 (442)
69 PLN02822 serine palmitoyltrans 78.3 35 0.00075 35.4 12.5 104 191-324 368-478 (481)
70 KOG1383|consensus 78.1 2.6 5.7E-05 43.9 4.1 43 39-81 340-382 (491)
71 TIGR00461 gcvP glycine dehydro 76.7 31 0.00067 39.2 12.2 109 167-318 306-426 (939)
72 COG1104 NifS Cysteine sulfinat 74.9 44 0.00094 34.3 11.8 127 168-326 232-380 (386)
73 PLN02414 glycine dehydrogenase 74.8 24 0.00052 40.3 10.8 91 184-319 375-465 (993)
74 PRK07179 hypothetical protein; 74.6 14 0.0003 36.6 8.1 30 294-323 369-398 (407)
75 COG1932 SerC Phosphoserine ami 73.9 33 0.00071 34.9 10.5 99 187-322 263-362 (365)
76 TIGR00700 GABAtrnsam 4-aminobu 73.5 46 0.00099 33.5 11.6 38 284-321 381-418 (420)
77 PF02347 GDC-P: Glycine cleava 73.1 13 0.00027 38.6 7.6 95 181-317 335-429 (429)
78 PRK06108 aspartate aminotransf 73.0 47 0.001 32.2 11.2 93 189-321 284-380 (382)
79 cd00616 AHBA_syn 3-amino-5-hyd 73.0 34 0.00074 32.5 10.1 31 187-217 228-258 (352)
80 PRK12462 phosphoserine aminotr 72.2 21 0.00046 36.0 8.8 98 188-321 262-360 (364)
81 TIGR03812 tyr_de_CO2_Arch tyro 71.9 11 0.00023 36.4 6.4 47 32-78 267-313 (373)
82 PRK02948 cysteine desulfurase; 71.7 53 0.0012 31.9 11.3 35 294-328 345-379 (381)
83 cd00609 AAT_like Aspartate ami 71.4 25 0.00053 32.8 8.6 91 187-318 255-349 (350)
84 PRK07495 4-aminobutyrate amino 70.2 81 0.0018 32.0 12.6 43 284-326 382-424 (425)
85 PRK13034 serine hydroxymethylt 69.6 46 0.00099 33.6 10.6 94 191-322 286-391 (416)
86 PRK06058 4-aminobutyrate amino 69.1 65 0.0014 32.8 11.7 40 284-323 403-442 (443)
87 PRK05964 adenosylmethionine--8 69.0 58 0.0012 32.8 11.2 31 294-324 393-423 (423)
88 TIGR01437 selA_rel uncharacter 68.8 78 0.0017 31.2 11.9 94 197-320 269-362 (363)
89 PRK05764 aspartate aminotransf 68.4 95 0.0021 30.3 12.3 36 285-322 353-390 (393)
90 TIGR01821 5aminolev_synth 5-am 67.6 39 0.00085 33.3 9.5 30 295-324 368-397 (402)
91 PRK14012 cysteine desulfurase; 67.2 46 0.001 32.9 9.9 32 294-325 350-381 (404)
92 KOG0628|consensus 67.2 7.7 0.00017 40.6 4.5 48 31-78 352-399 (511)
93 TIGR01365 serC_2 phosphoserine 66.8 56 0.0012 33.0 10.5 106 188-320 260-370 (374)
94 PRK06931 diaminobutyrate--2-ox 66.6 75 0.0016 32.7 11.6 43 284-326 415-457 (459)
95 cd06454 KBL_like KBL_like; thi 65.7 56 0.0012 30.9 9.9 27 294-320 322-348 (349)
96 PRK06918 4-aminobutyrate amino 65.5 86 0.0019 32.0 11.7 43 284-326 404-446 (451)
97 PRK06938 diaminobutyrate--2-ox 65.2 94 0.002 32.1 12.0 41 284-324 421-461 (464)
98 PRK06777 4-aminobutyrate amino 64.6 95 0.0021 31.4 11.8 38 284-321 382-419 (421)
99 PRK09331 Sep-tRNA:Cys-tRNA syn 64.5 1.3E+02 0.0029 29.6 12.6 102 190-324 279-382 (387)
100 TIGR02407 ectoine_ectB diamino 63.5 86 0.0019 31.6 11.2 39 284-322 373-411 (412)
101 PLN02724 Molybdenum cofactor s 63.3 41 0.00089 37.2 9.5 27 295-321 460-486 (805)
102 PRK09064 5-aminolevulinate syn 63.1 68 0.0015 31.6 10.3 30 295-324 369-398 (407)
103 PTZ00125 ornithine aminotransf 61.8 1.1E+02 0.0024 29.9 11.5 38 285-324 359-396 (400)
104 PRK07678 aminotransferase; Val 60.3 1.3E+02 0.0029 30.7 12.1 31 294-324 420-450 (451)
105 PRK08088 4-aminobutyrate amino 60.3 1.4E+02 0.003 30.1 12.0 41 284-324 384-424 (425)
106 PRK03244 argD acetylornithine 59.7 95 0.0021 30.5 10.6 32 294-325 365-396 (398)
107 TIGR02539 SepCysS Sep-tRNA:Cys 59.4 1.8E+02 0.0039 28.4 12.5 98 191-323 268-368 (370)
108 COG2008 GLY1 Threonine aldolas 59.1 74 0.0016 32.2 9.6 86 190-320 251-340 (342)
109 PRK11522 putrescine--2-oxoglut 58.1 89 0.0019 32.2 10.4 46 284-329 412-457 (459)
110 PTZ00094 serine hydroxymethylt 57.4 66 0.0014 32.8 9.3 98 188-323 300-408 (452)
111 COG0403 GcvP Glycine cleavage 57.1 1.5E+02 0.0033 31.0 11.6 111 167-320 323-447 (450)
112 PRK06541 hypothetical protein; 55.6 1.9E+02 0.0041 29.8 12.3 43 284-326 416-458 (460)
113 PRK05958 8-amino-7-oxononanoat 54.7 87 0.0019 30.0 9.2 26 295-320 359-384 (385)
114 PRK06105 aminotransferase; Pro 54.5 55 0.0012 33.7 8.2 33 294-326 420-452 (460)
115 cd00610 OAT_like Acetyl ornith 54.1 94 0.002 30.3 9.5 35 284-320 378-412 (413)
116 cd00378 SHMT Serine-glycine hy 52.7 1.1E+02 0.0024 29.9 9.7 97 189-323 277-385 (402)
117 PRK08117 4-aminobutyrate amino 52.2 2.2E+02 0.0047 28.7 12.0 40 285-324 391-430 (433)
118 PLN02483 serine palmitoyltrans 51.7 1E+02 0.0022 31.9 9.7 31 295-325 438-468 (489)
119 PRK00854 rocD ornithine--oxo-a 51.6 2.2E+02 0.0047 28.0 11.6 29 293-321 371-399 (401)
120 cd06453 SufS_like Cysteine des 51.2 23 0.0005 34.2 4.6 45 34-78 256-300 (373)
121 PRK06062 hypothetical protein; 51.0 2E+02 0.0043 29.5 11.5 33 294-326 416-448 (451)
122 PRK09221 beta alanine--pyruvat 50.6 97 0.0021 31.7 9.2 31 293-323 413-443 (445)
123 PLN03226 serine hydroxymethylt 50.6 1.4E+02 0.003 31.1 10.4 102 188-323 311-419 (475)
124 PRK08593 4-aminobutyrate amino 50.1 3E+02 0.0065 28.2 12.7 40 293-332 399-438 (445)
125 PRK04635 histidinol-phosphate 49.9 1.3E+02 0.0028 29.2 9.6 23 295-320 330-352 (354)
126 PF00266 Aminotran_5: Aminotra 49.8 43 0.00094 32.5 6.3 61 38-117 260-320 (371)
127 PRK02731 histidinol-phosphate 48.8 2.5E+02 0.0055 27.0 12.3 35 284-321 328-364 (367)
128 PRK00011 glyA serine hydroxyme 48.8 2.1E+02 0.0046 28.2 11.1 97 187-321 279-387 (416)
129 PRK08360 4-aminobutyrate amino 47.9 3.1E+02 0.0067 28.1 12.3 33 293-325 396-428 (443)
130 TIGR01141 hisC histidinol-phos 47.8 94 0.002 29.7 8.2 85 189-318 259-346 (346)
131 PLN02855 Bifunctional selenocy 47.8 48 0.001 33.0 6.3 45 36-80 292-336 (424)
132 TIGR01979 sufS cysteine desulf 47.7 47 0.001 32.5 6.2 45 35-79 277-321 (403)
133 COG0156 BioF 7-keto-8-aminopel 47.4 50 0.0011 33.7 6.5 50 271-320 337-387 (388)
134 PRK06148 hypothetical protein; 46.9 2.3E+02 0.0049 32.5 12.1 41 284-324 971-1011(1013)
135 PLN02760 4-aminobutyrate:pyruv 46.9 81 0.0018 33.0 8.1 36 294-329 462-497 (504)
136 PRK07483 hypothetical protein; 46.6 2.6E+02 0.0056 28.6 11.6 33 294-326 408-440 (443)
137 PRK13393 5-aminolevulinate syn 46.5 1.2E+02 0.0027 29.9 9.1 30 295-324 368-397 (406)
138 KOG0629|consensus 46.3 31 0.00067 36.1 4.7 53 26-78 367-419 (510)
139 PF13991 BssS: BssS protein fa 45.9 60 0.0013 25.8 5.3 50 285-334 6-71 (73)
140 PLN02651 cysteine desulfurase 45.4 1.6E+02 0.0034 28.6 9.4 29 189-217 257-286 (364)
141 TIGR01822 2am3keto_CoA 2-amino 45.1 1.7E+02 0.0036 28.5 9.5 28 295-322 361-388 (393)
142 COG0075 Serine-pyruvate aminot 44.4 3.7E+02 0.008 27.6 12.1 139 142-326 221-366 (383)
143 TIGR01825 gly_Cac_T_rel pyrido 43.7 1.5E+02 0.0032 28.7 8.9 29 295-323 353-381 (385)
144 PRK04366 glycine dehydrogenase 43.5 26 0.00057 36.1 3.9 39 34-72 330-368 (481)
145 PRK07481 hypothetical protein; 43.4 3.7E+02 0.008 27.5 12.1 31 294-324 416-446 (449)
146 PRK06225 aspartate aminotransf 42.4 3.3E+02 0.0072 26.5 11.3 29 295-325 350-378 (380)
147 PRK12403 putative aminotransfe 42.3 3.9E+02 0.0084 27.5 12.1 30 296-325 425-454 (460)
148 PRK13360 omega amino acid--pyr 42.0 1.4E+02 0.003 30.6 8.8 31 294-324 411-441 (442)
149 PRK06939 2-amino-3-ketobutyrat 41.7 2.3E+02 0.005 27.3 9.9 30 295-324 365-394 (397)
150 TIGR00858 bioF 8-amino-7-oxono 41.6 1.4E+02 0.003 28.2 8.2 87 191-318 269-360 (360)
151 PRK13392 5-aminolevulinate syn 41.5 2.3E+02 0.005 28.0 10.1 30 295-324 369-398 (410)
152 PRK07480 putative aminotransfe 40.8 4.2E+02 0.0092 27.2 13.1 33 294-326 419-451 (456)
153 PRK06082 4-aminobutyrate amino 40.8 4E+02 0.0086 27.5 11.9 32 293-324 421-452 (459)
154 PRK10534 L-threonine aldolase; 40.7 1.9E+02 0.0042 27.4 9.1 25 296-321 306-331 (333)
155 PRK00451 glycine dehydrogenase 40.2 46 0.001 33.4 4.9 42 37-78 336-377 (447)
156 PRK06916 adenosylmethionine--8 39.9 2.1E+02 0.0046 29.4 9.8 32 294-325 426-457 (460)
157 PRK05965 hypothetical protein; 39.8 1.9E+02 0.0041 29.8 9.4 32 293-324 417-448 (459)
158 COG0160 GabT 4-aminobutyrate a 39.5 2.7E+02 0.0059 29.1 10.5 45 280-324 402-446 (447)
159 PRK08742 adenosylmethionine--8 39.0 1.8E+02 0.0039 30.2 9.1 39 284-325 431-469 (472)
160 PRK05639 4-aminobutyrate amino 39.0 4.4E+02 0.0096 27.1 11.9 41 284-324 404-444 (457)
161 TIGR01328 met_gam_lyase methio 37.2 2.6E+02 0.0056 28.0 9.7 121 171-324 240-391 (391)
162 PF01053 Cys_Met_Meta_PP: Cys/ 36.5 46 0.001 33.7 4.3 129 40-198 244-386 (386)
163 PRK06943 adenosylmethionine--8 36.0 5E+02 0.011 26.7 11.8 31 294-324 417-447 (453)
164 TIGR01977 am_tr_V_EF2568 cyste 35.9 94 0.002 29.9 6.2 44 36-79 253-296 (376)
165 PRK07046 aminotransferase; Val 34.6 5.3E+02 0.011 26.5 12.2 36 284-324 416-451 (453)
166 PRK05937 8-amino-7-oxononanoat 34.2 55 0.0012 32.0 4.3 34 295-328 322-355 (370)
167 KOG1404|consensus 33.9 1.7E+02 0.0036 30.6 7.6 97 191-316 333-431 (442)
168 PF00155 Aminotran_1_2: Aminot 33.5 2.6E+02 0.0056 26.7 8.7 88 189-317 274-363 (363)
169 PRK06149 hypothetical protein; 33.4 5.1E+02 0.011 29.5 12.2 40 284-323 931-970 (972)
170 PRK07036 hypothetical protein; 33.1 5.6E+02 0.012 26.4 11.7 31 295-325 424-454 (466)
171 TIGR03372 putres_am_tran putre 32.7 2.9E+02 0.0064 28.4 9.5 37 284-320 405-441 (442)
172 PLN02624 ornithine-delta-amino 32.6 5.7E+02 0.012 26.3 13.6 38 284-323 407-444 (474)
173 PRK04073 rocD ornithine--oxo-a 32.3 2.3E+02 0.005 28.0 8.4 29 293-321 367-395 (396)
174 PLN03227 serine palmitoyltrans 32.1 3.3E+02 0.0073 27.1 9.6 31 295-325 354-384 (392)
175 PRK07908 hypothetical protein; 31.7 3.4E+02 0.0074 26.0 9.3 87 189-321 255-345 (349)
176 COG0520 csdA Selenocysteine ly 31.4 1.1E+02 0.0024 31.2 6.0 64 34-117 281-344 (405)
177 TIGR01885 Orn_aminotrans ornit 30.7 4.5E+02 0.0098 25.9 10.2 36 284-321 365-400 (401)
178 PRK08045 cystathionine gamma-s 30.2 4.3E+02 0.0094 26.4 10.0 117 178-327 239-386 (386)
179 TIGR01976 am_tr_V_VC1184 cyste 30.1 1.5E+02 0.0032 28.9 6.5 45 35-79 262-320 (397)
180 PRK01688 histidinol-phosphate 30.0 5.2E+02 0.011 25.0 10.3 85 188-317 263-350 (351)
181 PRK08249 cystathionine gamma-s 29.9 1.4E+02 0.003 30.1 6.5 70 38-115 248-317 (398)
182 PRK09264 diaminobutyrate--2-ox 28.8 96 0.0021 31.4 5.1 41 284-324 377-417 (425)
183 KOG1403|consensus 28.2 2.4E+02 0.0053 28.7 7.6 109 192-329 333-443 (452)
184 PRK07582 cystathionine gamma-l 28.2 3.7E+02 0.008 26.6 9.0 115 178-319 234-365 (366)
185 PRK13580 serine hydroxymethylt 27.5 3.2E+02 0.007 28.9 8.8 99 190-323 338-445 (493)
186 PRK08297 L-lysine aminotransfe 27.3 6.9E+02 0.015 25.6 11.0 30 295-324 413-442 (443)
187 PRK02610 histidinol-phosphate 27.0 6E+02 0.013 24.8 10.8 29 187-215 281-309 (374)
188 PRK07482 hypothetical protein; 27.0 7.1E+02 0.015 25.6 13.3 32 293-324 424-455 (461)
189 PHA03075 glutaredoxin-like pro 26.9 65 0.0014 28.0 2.9 20 99-118 60-81 (123)
190 PRK05769 4-aminobutyrate amino 26.9 6.9E+02 0.015 25.5 12.1 29 295-323 411-439 (441)
191 PRK04260 acetylornithine amino 26.4 6.1E+02 0.013 24.7 10.5 26 295-320 349-374 (375)
192 PRK06173 adenosylmethionine--8 26.2 3.5E+02 0.0076 27.6 8.6 30 294-323 396-425 (429)
193 PRK07986 adenosylmethionine--8 25.9 6.9E+02 0.015 25.5 10.7 29 294-322 394-422 (428)
194 PRK02936 argD acetylornithine 25.5 5.9E+02 0.013 24.6 9.8 26 295-320 351-376 (377)
195 PRK07812 O-acetylhomoserine am 25.4 1.1E+02 0.0023 31.5 4.7 134 39-203 286-435 (436)
196 PRK07030 adenosylmethionine--8 25.1 7.8E+02 0.017 25.4 12.0 31 294-324 417-447 (466)
197 PRK06917 hypothetical protein; 25.0 7.6E+02 0.016 25.3 12.4 31 294-324 408-438 (447)
198 PRK09792 4-aminobutyrate trans 25.0 7.2E+02 0.016 25.0 13.0 37 285-321 383-419 (421)
199 PRK07682 hypothetical protein; 24.6 6.5E+02 0.014 24.4 11.7 28 294-323 349-376 (378)
200 TIGR00508 bioA adenosylmethion 24.0 7.7E+02 0.017 25.0 11.0 29 294-322 397-425 (427)
201 PF10206 WRW: Mitochondrial F1 23.6 57 0.0012 27.6 1.9 54 3-64 13-66 (104)
202 cd06452 SepCysS Sep-tRNA:Cys-t 22.7 2.1E+02 0.0045 27.7 6.1 29 51-79 259-287 (361)
203 PRK05387 histidinol-phosphate 22.7 6.7E+02 0.015 23.8 9.8 24 295-321 328-351 (353)
204 PRK09295 bifunctional cysteine 22.5 1.3E+02 0.0028 29.7 4.6 48 32-79 280-327 (406)
205 PRK04612 argD acetylornithine 21.7 8.4E+02 0.018 24.6 11.1 31 294-324 374-404 (408)
206 PF06058 DCP1: Dcp1-like decap 21.2 53 0.0012 28.1 1.4 27 97-123 18-44 (122)
207 PF06528 Phage_P2_GpE: Phage P 20.0 61 0.0013 22.7 1.2 32 246-281 5-36 (39)
No 1
>KOG0630|consensus
Probab=100.00 E-value=9.5e-40 Score=326.83 Aligned_cols=277 Identities=18% Similarity=0.222 Sum_probs=230.0
Q ss_pred HHHHhhchhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEeecCCCCCCc--hhhhhhccCCccccccccce
Q psy2480 30 TNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILSHGPVSGMG--LKEVTSQYLPVQTILESVQS 107 (337)
Q Consensus 30 ~~~kl~aLplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~ils~~~~~~~~--~~d~~~~~~~~~~lfe~~~p 107 (337)
++|||+|||||+++||||+|+|++||++||++|+.|+|+++++++|+++||.|+.+.. +.|.+.+||+|+.||++++|
T Consensus 391 ~rekLdaLp~Wta~q~LggKaIadmienAFll~kilfe~aSa~~eiemig~dn~aelaarl~dn~~sPfdvqalfdaaaP 470 (838)
T KOG0630|consen 391 LREKLDALPLWTALQALGGKAIADMIENAFLLCKILFEGASACEEIEMIGHDNGAELAARLSDNIFSPFDVQALFDAAAP 470 (838)
T ss_pred HHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhcCCceeEeccCCHHHHHHHHhhccCCcchHhhhhcccCC
Confidence 8999999999999999999999999999999999999999999999999998888654 99999999999999999999
Q ss_pred eEEEEeccCCCCCCcc---cccc------ccccccCCCCCCCCcccccchhcccccccccccCCCCcc-ccccccCcchh
Q psy2480 108 CVVFQFVPKDAGWYTF---YTFI------SSLLCSDAGWGPVPAYYDKLNSWLGFTNIGDDLSTPLSM-QTNEKAIALPV 177 (337)
Q Consensus 108 vvvFqf~~~~~~~~~~---~~~~------~~~~~~~~~~~~~~~~~d~ln~WLG~~~~p~V~~~~ld~-q~srr~~AL~l 177 (337)
+|.++|+++..-...- +.+. .+...++.+...+.+|.|.||.|||+.++|.++.-+.|. +.....+.+.+
T Consensus 471 tVai~~~~~tsIk~a~q~hkaaaaaaddedA~aiaeke~~deaeY~D~LNaWL~d~Llpd~~~f~fdtIE~~gn~GiafR 550 (838)
T KOG0630|consen 471 TVAIFFDGSTSIKLAGQGHKAAAAAADDEDAEAIAEKEKIDEAEYFDRLNAWLGDGLLPDCLNFDFDTIEHGGNHGIAFR 550 (838)
T ss_pred eEEEEecCceeeeccccccHHHHhhccccchhhcchhhhcchHHHHHHHHHHHhcccccCCCCCCceeeecCCccceeEE
Confidence 9999999976321111 1111 122334556667899999999999999999999777774 55559999999
Q ss_pred hHHHHh-hCh---------------hhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCcccccc
Q psy2480 178 WTTLKS-MGQ---------------TGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILE 241 (337)
Q Consensus 178 W~~Lq~-LG~---------------d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~ 241 (337)
||+|.. +|. ++++++++.|+.....|.++++-++.++++..++|+|.|+|
T Consensus 551 fCPLEhgaae~pphidhlerFaqkLea~m~IleaTi~hKakF~eLkd~~~sL~LlPi~eWAGiGaV-------------- 616 (838)
T KOG0630|consen 551 FCPLEHGAAEQPPHIDHLERFAQKLEAHMDILEATIKHKAKFIELKDCFDSLRLLPIPEWAGIGAV-------------- 616 (838)
T ss_pred ecccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceEEeeccccccccce--------------
Confidence 999988 554 47789999999999999999999999999999999999999
Q ss_pred ccceeEEEEecC----CCCC---CCCCcchhhHHHHHHHHHHhhcCCCcceEEEEeeeCc-EEEEEecCCCC--------
Q psy2480 242 SVQSCVVFQFVP----KDAG---WGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETAAFG-TVLRICPFECS-------- 305 (337)
Q Consensus 242 ~~lsvVvFRy~P----~~~~---~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~~~G-~~LRfcplnp~-------- 305 (337)
+|.| ++++ .+..+...+.||--|.+.|...... +.+.+-.-+| .|+||.++...
T Consensus 617 --------~fiPsivkE~~~e~~nDiaKqeinhLNidLVeaLKStDaA--FS~Gd~Tr~Gl~CVkFGMlsd~kdleeLld 686 (838)
T KOG0630|consen 617 --------CFIPSIVKEGNEEDLNDIAKQEINHLNIDLVEALKSTDAA--FSLGDCTRDGLICVKFGMLSDEKDLEELLD 686 (838)
T ss_pred --------EecccccccCCHhHhhHHHHHHHhhccHHHHHHHhhhhhh--cccCCccccceeEEEeccccchhhHHHHHH
Confidence 5555 3332 1233566899999999999887773 5666666566 69999999885
Q ss_pred ----ChhHHHHHHHHHHHHHhhhhccccc
Q psy2480 306 ----SGGDYESFLVCLDAQVYSGSQGLFH 330 (337)
Q Consensus 306 ----T~edI~~~v~~L~~~~~il~~t~~~ 330 (337)
....|++--+.|+.+.++++++||-
T Consensus 687 lVaqkGKeieenqq~LDslaeiikkGIEA 715 (838)
T KOG0630|consen 687 LVAQKGKEIEENQQVLDSLAEIIKKGIEA 715 (838)
T ss_pred HHHHhchhhhhHHHHHHHHHHHHHHHHHH
Confidence 2567788888899999999988873
No 2
>KOG0630|consensus
Probab=100.00 E-value=7.7e-35 Score=291.70 Aligned_cols=209 Identities=24% Similarity=0.377 Sum_probs=189.3
Q ss_pred ccccccccccCC------CCCCCCcccccchhccccccccccc-CCCCc----------cccccccCcchhhHHHHhhCh
Q psy2480 124 YTFISSLLCSDA------GWGPVPAYYDKLNSWLGFTNIGDDL-STPLS----------MQTNEKAIALPVWTTLKSMGQ 186 (337)
Q Consensus 124 ~~~~~~~~~~~~------~~~~~~~~~d~ln~WLG~~~~p~V~-~~~ld----------~q~srr~~AL~lW~~Lq~LG~ 186 (337)
..++++++|+++ +..+.++|+-+++.|||+|++|.|+ |||++ |++.||++|||+|.++|+||.
T Consensus 330 GhaiAALt~aepnnil~HV~eqldSMal~ialWLGiPSaPiV~LHRPleg~aaSafesdpi~rekLdaLp~Wta~q~Lgg 409 (838)
T KOG0630|consen 330 GHAIAALTCAEPNNILGHVEEQLDSMALNIALWLGIPSAPIVLLHRPLEGSAASAFESDPILREKLDALPLWTALQALGG 409 (838)
T ss_pred cchhhheeecCcccchhHHHHHHhhccchhHHHhCCCCCceEEeecccccccchhcccChHHHHhhccchHHHHHHHhcc
Confidence 456788999874 5567799999999999999999999 99976 789999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcce--eeeccccCccccccccceeEEEEecCC----------
Q psy2480 187 TGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLK--EVTSQYLPVQTILESVQSCVVFQFVPK---------- 254 (337)
Q Consensus 187 d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v--~~~~~~~~~~~~~~~~lsvVvFRy~P~---------- 254 (337)
++|.+||+.+|.+|+.+.+.+++.+++|++++.+.+.+++. +++.+|++++.+|++..|+|.++|...
T Consensus 410 KaIadmienAFll~kilfe~aSa~~eiemig~dn~aelaarl~dn~~sPfdvqalfdaaaPtVai~~~~~tsIk~a~q~h 489 (838)
T KOG0630|consen 410 KAIADMIENAFLLCKILFEGASACEEIEMIGHDNGAELAARLSDNIFSPFDVQALFDAAAPTVAIFFDGSTSIKLAGQGH 489 (838)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCceeEeccCCHHHHHHHHhhccCCcchHhhhhcccCCeEEEEecCceeeecccccc
Confidence 99999999999999999999999999999999898888876 999999999999999999999998731
Q ss_pred -------CC-C------CC--CCcchhhHHHHHHHHHHhhcCCCcceEEEEee-eCcEEEEEecCCCC------ChhHHH
Q psy2480 255 -------DA-G------WG--PVPAYYDKLNSWLGQILQRDVPSVSLNLTETA-AFGTVLRICPFECS------SGGDYE 311 (337)
Q Consensus 255 -------~~-~------~e--~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~-~~G~~LRfcplnp~------T~edI~ 311 (337)
+. + .+ .+.+|.|+||+|||++|+++|+..+++++|+. .+|.|+||||++.- +.|+++
T Consensus 490 kaaaaaaddedA~aiaeke~~deaeY~D~LNaWL~d~Llpd~~~f~fdtIE~~gn~GiafRfCPLEhgaae~pphidhle 569 (838)
T KOG0630|consen 490 KAAAAAADDEDAEAIAEKEKIDEAEYFDRLNAWLGDGLLPDCLNFDFDTIEHGGNHGIAFRFCPLEHGAAEQPPHIDHLE 569 (838)
T ss_pred HHHHhhccccchhhcchhhhcchHHHHHHHHHHHhcccccCCCCCCceeeecCCccceeEEecccccccccCCCchHHHH
Confidence 00 0 01 15789999999999999999999999999998 69999999999982 699999
Q ss_pred HHHHHHHHHHhhhhccccccC
Q psy2480 312 SFLVCLDAQVYSGSQGLFHLP 332 (337)
Q Consensus 312 ~~v~~L~~~~~il~~t~~~~~ 332 (337)
+|++.|+++++|+.+||-||-
T Consensus 570 rFaqkLea~m~IleaTi~hKa 590 (838)
T KOG0630|consen 570 RFAQKLEAHMDILEATIKHKA 590 (838)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999984
No 3
>PLN02590 probable tyrosine decarboxylase
Probab=99.83 E-value=7.9e-20 Score=188.76 Aligned_cols=161 Identities=14% Similarity=0.216 Sum_probs=138.7
Q ss_pred CCCCCCcccccchhcccccc------ccc------------------------cc-CCCCccccccccCcchhhHHHHhh
Q psy2480 136 GWGPVPAYYDKLNSWLGFTN------IGD------------------------DL-STPLSMQTNEKAIALPVWTTLKSM 184 (337)
Q Consensus 136 ~~~~~~~~~d~ln~WLG~~~------~p~------------------------V~-~~~ld~q~srr~~AL~lW~~Lq~L 184 (337)
.+.+.+|++-++-.||++|- ++. +. +...+++.+||+|+||+|++|+++
T Consensus 342 Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~ 421 (539)
T PLN02590 342 GIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLY 421 (539)
T ss_pred CCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHH
Confidence 55667999999999999881 110 11 222348899999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcch
Q psy2480 185 GQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAY 264 (337)
Q Consensus 185 G~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y 264 (337)
|.+++.++|++.++++++|.+.|++.|++|++. ++.+++|||||.|++.+ ++.
T Consensus 422 G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~-----------------------~~~l~iVcFr~~~~~~~----~~~ 474 (539)
T PLN02590 422 GSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVT-----------------------TRYFSLVCFRLAPVDGD----EDQ 474 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-----------------------CCceEEEEEEecCCCCC----HHH
Confidence 999999999999999999999999999999998 68899999999987643 456
Q ss_pred hhHHHHHHHHHHhhcCCCcceEEEEeeeCc-EEEEEecCCCC-ChhHHHHHHHHHHHHHhhhhc
Q psy2480 265 YDKLNSWLGQILQRDVPSVSLNLTETAAFG-TVLRICPFECS-SGGDYESFLVCLDAQVYSGSQ 326 (337)
Q Consensus 265 ~D~LNswLgqiL~~~~~~~~~~v~et~~~G-~~LRfcplnp~-T~edI~~~v~~L~~~~~il~~ 326 (337)
.|++|..|.+.+++++. ++|..|.++| ++||||..||. |++||+.+++.|.+.+..+..
T Consensus 475 ~~~ln~~l~~~l~~~G~---~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~~ 535 (539)
T PLN02590 475 CNERNRELLAAVNSTGK---IFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFTR 535 (539)
T ss_pred HHHHHHHHHHHHHhCCC---EEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 79999988888888777 9999999977 69999999999 699999999999998877653
No 4
>PLN02880 tyrosine decarboxylase
Probab=99.75 E-value=2.8e-17 Score=167.93 Aligned_cols=160 Identities=16% Similarity=0.184 Sum_probs=135.4
Q ss_pred CCCCCCcccccchhccccccc------cc------------------------cc-CCCCccccccccCcchhhHHHHhh
Q psy2480 136 GWGPVPAYYDKLNSWLGFTNI------GD------------------------DL-STPLSMQTNEKAIALPVWTTLKSM 184 (337)
Q Consensus 136 ~~~~~~~~~d~ln~WLG~~~~------p~------------------------V~-~~~ld~q~srr~~AL~lW~~Lq~L 184 (337)
.+.+.++++-++-.||+.|-- +. .. +....++.+||+++|++|++|+.+
T Consensus 294 gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~ 373 (490)
T PLN02880 294 GVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLY 373 (490)
T ss_pred CchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHh
Confidence 345678999999999998811 10 00 122336799999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcch
Q psy2480 185 GQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAY 264 (337)
Q Consensus 185 G~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y 264 (337)
|.+++.++|++.++++++|.+.|++.|+++++. ++.+++|||||.|...+ .+.
T Consensus 374 G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~-----------------------~~~~~iv~Fr~~~~~~~----~~~ 426 (490)
T PLN02880 374 GVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVT-----------------------PRIFSLVCFRLVPPKNN----EDN 426 (490)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEec-----------------------CCceEEEEEEEeCCCCC----hhh
Confidence 999999999999999999999999999999998 67899999999886543 466
Q ss_pred hhHHHHHHHHHHhhcCCCcceEEEEeeeCc-EEEEEecCCCC-ChhHHHHHHHHHHHHHhhhh
Q psy2480 265 YDKLNSWLGQILQRDVPSVSLNLTETAAFG-TVLRICPFECS-SGGDYESFLVCLDAQVYSGS 325 (337)
Q Consensus 265 ~D~LNswLgqiL~~~~~~~~~~v~et~~~G-~~LRfcplnp~-T~edI~~~v~~L~~~~~il~ 325 (337)
.|++|..|.+.|++++. +++..|.++| .+||||+.||. |.+||+.+++.|.+.++.+.
T Consensus 427 ~~~~n~~l~~~l~~~g~---~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~ 486 (490)
T PLN02880 427 GNKLNHDLLDAVNSSGK---IFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLL 486 (490)
T ss_pred HHHHHHHHHHHHHhCCC---EEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 79999988888887766 9999999966 69999999999 47999999999999887764
No 5
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=99.54 E-value=6.4e-14 Score=144.61 Aligned_cols=152 Identities=11% Similarity=0.159 Sum_probs=122.5
Q ss_pred CCCCcccccchhcccccc-ccc---------------ccC---------CCCccccccccCcchhhHHHHhhChhhHHHH
Q psy2480 138 GPVPAYYDKLNSWLGFTN-IGD---------------DLS---------TPLSMQTNEKAIALPVWTTLKSMGQTGIQDI 192 (337)
Q Consensus 138 ~~~~~~~d~ln~WLG~~~-~p~---------------V~~---------~~ld~q~srr~~AL~lW~~Lq~LG~d~i~~~ 192 (337)
.+.++++-+.-.||+.|- ... ..| .+..++.+|+++++++|.+|+.+|.+++.++
T Consensus 322 e~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~i 401 (522)
T TIGR03799 322 ERADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELL 401 (522)
T ss_pred hhCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHH
Confidence 456888888888888771 011 012 1223779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCC-------CC---CCc
Q psy2480 193 LTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAG-------WG---PVP 262 (337)
Q Consensus 193 I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~-------~e---~~~ 262 (337)
+++.++++++|.+.|++.|+++++. ++.+++|||||.|++.. .+ +..
T Consensus 402 i~~~~~la~~l~~~L~~~~~~el~~-----------------------~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~ 458 (522)
T TIGR03799 402 IDQSIEKAKYFADLIQQQPDFELVT-----------------------EPELCLLTYRYVPEEVQQALAKADEEQREKIN 458 (522)
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEec-----------------------CCCccEEEEEEeChhhcccccccchhhhhhHH
Confidence 9999999999999999999999998 67899999999996532 01 112
Q ss_pred chhhHHHHHHHHHHhhcCCCcceEEEEeeeC-------c-EEEEEecCCCC-ChhHHHHHHH
Q psy2480 263 AYYDKLNSWLGQILQRDVPSVSLNLTETAAF-------G-TVLRICPFECS-SGGDYESFLV 315 (337)
Q Consensus 263 ~y~D~LNswLgqiL~~~~~~~~~~v~et~~~-------G-~~LRfcplnp~-T~edI~~~v~ 315 (337)
+++|++|..|.+.+++++. ++|..|..+ | ++||+|..||. |.+||+.+++
T Consensus 459 ~~~~~ln~~i~~~~~~~G~---~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~ 517 (522)
T TIGR03799 459 ELLDRLTKFIQKRQREAGK---SFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILD 517 (522)
T ss_pred HHHHHHHHHHHHHHHhcCC---EEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHH
Confidence 4579999988888888877 899999865 4 69999999999 6889998543
No 6
>KOG0628|consensus
Probab=99.45 E-value=1.1e-12 Score=132.25 Aligned_cols=130 Identities=15% Similarity=0.211 Sum_probs=116.8
Q ss_pred CCCCccccccccCcchhhHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccc
Q psy2480 161 STPLSMQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTIL 240 (337)
Q Consensus 161 ~~~ld~q~srr~~AL~lW~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~ 240 (337)
|++..+.++||||+||+|+.++.+|.+++.+.|++.++|++.|.+++.+.+.+|+..
T Consensus 344 yrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~----------------------- 400 (511)
T KOG0628|consen 344 YRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVN----------------------- 400 (511)
T ss_pred ccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeec-----------------------
Confidence 788889999999999999999999999999999999999999999999999999999
Q ss_pred cccceeEEEEecCCCCCCCCCcchhhHHHHHHHHHHhhcCCCcceEEEEeeeCc-EEEEEecCCCC-ChhHHHHHHHHHH
Q psy2480 241 ESVQSCVVFQFVPKDAGWGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETAAFG-TVLRICPFECS-SGGDYESFLVCLD 318 (337)
Q Consensus 241 ~~~lsvVvFRy~P~~~~~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~~~G-~~LRfcplnp~-T~edI~~~v~~L~ 318 (337)
+..+..||||-.+. |+.|+.|.+.+..++. +.++.+..+| ++||||.-.+. +.+||++..+.|.
T Consensus 401 ~~~lgLvcFRlk~~-----------N~~ne~Ll~~in~~g~---i~l~~~~l~gk~vlRf~V~s~~t~~~di~~a~~~I~ 466 (511)
T KOG0628|consen 401 KRILGLVCFRLKGD-----------NEINEALLNRLNSSGR---IHLVPASLHGKFVLRFAVCSPLTNESDIDEAWKIIF 466 (511)
T ss_pred ccccceeEEeecCC-----------cHHHHHHHHHHHhcCc---EEEEEeeecceEEEEEEecCCCCcHHHHHHHHHHHH
Confidence 68899999998644 5568877777777777 9999999977 69999998888 6999999999999
Q ss_pred HHHhhhhcc
Q psy2480 319 AQVYSGSQG 327 (337)
Q Consensus 319 ~~~~il~~t 327 (337)
+....+..-
T Consensus 467 ~~a~~l~~~ 475 (511)
T KOG0628|consen 467 EAADELFEA 475 (511)
T ss_pred HHHHHHHhh
Confidence 998885443
No 7
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.17 E-value=2.2e-10 Score=115.90 Aligned_cols=129 Identities=16% Similarity=0.125 Sum_probs=105.7
Q ss_pred cccccccc-CcchhhHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCcccccc-c
Q psy2480 165 SMQTNEKA-IALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILE-S 242 (337)
Q Consensus 165 d~q~srr~-~AL~lW~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~-~ 242 (337)
+++.+|+. +++++|+.|+.+|.+++.+++++.++++++|.+.|++.|+++++. + +
T Consensus 299 t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~-----------------------~~~ 355 (431)
T TIGR01788 299 TLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIIS-----------------------DGS 355 (431)
T ss_pred ceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEee-----------------------CCC
Confidence 46678886 889999999999999999999999999999999999999999997 4 5
Q ss_pred cceeEEEEecCCCCCCCCCcchhhHHHHHHHHHHhhcCCCcceEEEEeeeCc-EEEEEecCCCCChhHHHHHHHHHHHHH
Q psy2480 243 VQSCVVFQFVPKDAGWGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETAAFG-TVLRICPFECSSGGDYESFLVCLDAQV 321 (337)
Q Consensus 243 ~lsvVvFRy~P~~~~~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~~~G-~~LRfcplnp~T~edI~~~v~~L~~~~ 321 (337)
.+++|+||+.|.+.. +.-|..+.+.|.+.+-........+..+| .++|+|...+-+.+.++.|++.|++.+
T Consensus 356 ~~~iV~Fr~~~~~~~--------~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~ 427 (431)
T TIGR01788 356 GIPLVAFKLKDDADP--------GYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAAL 427 (431)
T ss_pred CceEEEEEeCCCCCC--------CcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 799999999875421 11167788888876653333455666755 699999866668999999999999988
Q ss_pred hhh
Q psy2480 322 YSG 324 (337)
Q Consensus 322 ~il 324 (337)
..|
T Consensus 428 ~~~ 430 (431)
T TIGR01788 428 AYL 430 (431)
T ss_pred Hhh
Confidence 876
No 8
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=99.01 E-value=6.6e-09 Score=109.43 Aligned_cols=161 Identities=14% Similarity=0.084 Sum_probs=114.3
Q ss_pred CCCCCCcccccchhccccccc-cc---------------ccCC---CC--------ccccccccC--cchhhHHHHhh--
Q psy2480 136 GWGPVPAYYDKLNSWLGFTNI-GD---------------DLST---PL--------SMQTNEKAI--ALPVWTTLKSM-- 184 (337)
Q Consensus 136 ~~~~~~~~~d~ln~WLG~~~~-p~---------------V~~~---~l--------d~q~srr~~--AL~lW~~Lq~L-- 184 (337)
.+.+.+|++-++-.|+.+|-- .. .+|. +- -.++.+|.+ |+++|+++|++
T Consensus 370 gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~ 449 (608)
T TIGR03811 370 AISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPL 449 (608)
T ss_pred cCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhcCcchhccccccCcccccccceecCCccHHHHHHHHHHHHHhc
Confidence 456778888888888888811 10 0111 11 034566655 99999999998
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhh------CCCeEE--eecCCCCCCcceeeeccccCccccccccceeEEEEecCCCC
Q psy2480 185 GQTGIQDILTFNFSLVESIRQKLSE------YPCLRI--LSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDA 256 (337)
Q Consensus 185 G~d~i~~~I~~t~~La~~~~e~L~~------~p~Lei--L~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~ 256 (337)
|.+++.++|+++++++++|.+.|++ .|.+++ +. ++.+++|||||.|.+.
T Consensus 450 G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~-----------------------~pdlniV~Fr~~~~g~ 506 (608)
T TIGR03811 450 NVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLT-----------------------KPDFNMVDYVFNEKGN 506 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecC-----------------------CCCcceEEEEEecCCC
Confidence 9999999999999999999999998 566776 43 6889999999999885
Q ss_pred CCCCCcchhhHHHHHHHHHHhh-c--CCCcceEEEEeee--------------------------Cc-EEEEEecCCCC-
Q psy2480 257 GWGPVPAYYDKLNSWLGQILQR-D--VPSVSLNLTETAA--------------------------FG-TVLRICPFECS- 305 (337)
Q Consensus 257 ~~e~~~~y~D~LNswLgqiL~~-~--~~~~~~~v~et~~--------------------------~G-~~LRfcplnp~- 305 (337)
+ ..+..|+||+.+-+.+.= . ...-.+.+..|+. ++ ++||-|..+|=
T Consensus 507 ~---~l~~~n~ln~~i~~~~~~~~g~~~~~~~~~s~t~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~m~p~~ 583 (608)
T TIGR03811 507 D---DLVKMNKLNHAFYDYASYVKGSIYNNEFITSHTDFAIPDYGDSPFAFVNSLGFSDEEWQRAGKVTILRASVMTPYM 583 (608)
T ss_pred c---cHHHHHHHHHHHHHhhccccCCCCCcceEeeecccccchhhhhHHHHHHHcCCChhhhccCCceEEEEEEecCccc
Confidence 3 136689999877665541 1 1222344544421 23 59999999995
Q ss_pred -ChhHHHHHHHHHHHHHh
Q psy2480 306 -SGGDYESFLVCLDAQVY 322 (337)
Q Consensus 306 -T~edI~~~v~~L~~~~~ 322 (337)
..+.++.+++.|+..+.
T Consensus 584 ~~~~~~~~~~~~~~~~~~ 601 (608)
T TIGR03811 584 NDKENFDEYAPKIKAAMQ 601 (608)
T ss_pred CChhhHHHHHHHHHHHHH
Confidence 45777777777776543
No 9
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=98.90 E-value=1.6e-09 Score=107.49 Aligned_cols=94 Identities=21% Similarity=0.356 Sum_probs=79.4
Q ss_pred CCCCCCcccccchhccccccccc-----------------ccCCC--------------CccccccccCcchhhHHHHhh
Q psy2480 136 GWGPVPAYYDKLNSWLGFTNIGD-----------------DLSTP--------------LSMQTNEKAIALPVWTTLKSM 184 (337)
Q Consensus 136 ~~~~~~~~~d~ln~WLG~~~~p~-----------------V~~~~--------------ld~q~srr~~AL~lW~~Lq~L 184 (337)
.+.+.+|++-++-.||+.|.--- ..|.. .+++.+||+++|++|++|+.+
T Consensus 249 gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~ 328 (373)
T PF00282_consen 249 GIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSL 328 (373)
T ss_dssp TGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccccccccccccccccccchHHHHHHHHHhc
Confidence 56677999999999999982111 11322 226789999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEec
Q psy2480 185 GQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFV 252 (337)
Q Consensus 185 G~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~ 252 (337)
|.+++.++|++.++++++|.+.|++.|.++++. ++.+++|||||.
T Consensus 329 G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~-----------------------~~~~~~vcFr~k 373 (373)
T PF00282_consen 329 GREGYRERIRRCIELARYLADRLRKDPRFELVN-----------------------EPDLNIVCFRYK 373 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESS-----------------------TTSSSEEEEEES
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEc-----------------------CCCceEEEEEeC
Confidence 999999999999999999999999999999998 789999999994
No 10
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=98.71 E-value=5.2e-08 Score=99.67 Aligned_cols=125 Identities=16% Similarity=0.242 Sum_probs=95.6
Q ss_pred CcchhhHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEec
Q psy2480 173 IALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFV 252 (337)
Q Consensus 173 ~AL~lW~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~ 252 (337)
++++.|..++.||.+++.+++++++++++++.+.+++.+.++++. ++.+|+|+|||.
T Consensus 324 ~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~-----------------------~p~l~~V~fr~~ 380 (460)
T COG0076 324 QALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVN-----------------------EPELPIVAFRLK 380 (460)
T ss_pred HHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeec-----------------------CCccceEEEEcC
Confidence 899999999999999999999999999999999999999999999 689999999994
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHhhcCCCcceEEEEeee-CcEEEEEecCCCCC-hhHHHHHHHHHHHHHhhh
Q psy2480 253 PKDAGWGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETAA-FGTVLRICPFECSS-GGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 253 P~~~~~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~~-~G~~LRfcplnp~T-~edI~~~v~~L~~~~~il 324 (337)
|.........++.|++| | ++-.+.++.+-..+..+.. ...+++|...++.+ .++ +.....+.......
T Consensus 381 ~~~~~~~~~~~~~~~~g-w--~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 450 (460)
T COG0076 381 DDEDTLADLSERLDRRG-W--QVPAQLLPKGLAIVFGTHVTGRQGLKFIVANLLITDRE-ESLLALIEEPGREI 450 (460)
T ss_pred CcccchhchHHHHHhcC-c--eeecccCCccceeeeeeEEeeeeeehhhcchhhhhhhh-HHHHHHhhhhhhhh
Confidence 33221122345566667 4 4555566655567777776 55799999999983 344 66666666544333
No 11
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=98.41 E-value=3.5e-06 Score=80.32 Aligned_cols=136 Identities=21% Similarity=0.239 Sum_probs=98.9
Q ss_pred CCCcccccchhcccccc-cccccCCCCccccccccCcchhhHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEee
Q psy2480 139 PVPAYYDKLNSWLGFTN-IGDDLSTPLSMQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILS 217 (337)
Q Consensus 139 ~~~~~~d~ln~WLG~~~-~p~V~~~~ld~q~srr~~AL~lW~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~ 217 (337)
+.+.+.-++..||+-|. ...+..+ ++..|.+++.+|.+++.+++++..++++++.+.+++.++++++.
T Consensus 206 ~~d~~~~s~~K~l~~p~g~g~~~~~-----------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 274 (345)
T cd06450 206 RVDSISVDPHKYGLVPLGCSAVLVR-----------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLG 274 (345)
T ss_pred ccCEEEEchhHhhCCCcchHHHHHH-----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec
Confidence 45666667777776442 1111111 89999999999999999999999999999999999999998886
Q ss_pred cCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhHHHHHHHHHHhhcCCCcceEEEEeee-CcEE
Q psy2480 218 HGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETAA-FGTV 296 (337)
Q Consensus 218 ~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~~-~G~~ 296 (337)
++..++|+|++.+... .+..+..+.+.|.+.+ .+.+..... .+.+
T Consensus 275 -----------------------~~~~~iv~f~~~~~~~--------~~~~~~~i~~~L~~~g---~~~~~~~~~~~~~~ 320 (345)
T cd06450 275 -----------------------EPNLSLVCFRLKPSVK--------LDELNYDLSDRLNERG---GWHVPATTLGGPNV 320 (345)
T ss_pred -----------------------CCceeEEEEEECCcch--------hhHHHHHHHHHHHhcC---CEEEEeeEECCeEE
Confidence 4568899999865310 0122344555554442 245554444 4579
Q ss_pred EEEecCCCC-ChhHHHHHHHHHHH
Q psy2480 297 LRICPFECS-SGGDYESFLVCLDA 319 (337)
Q Consensus 297 LRfcplnp~-T~edI~~~v~~L~~ 319 (337)
+|+++..+. |.+||+++++.|++
T Consensus 321 lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 321 LRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHh
Confidence 999999986 99999999999875
No 12
>PLN02263 serine decarboxylase
Probab=98.17 E-value=1.2e-05 Score=82.78 Aligned_cols=134 Identities=17% Similarity=0.247 Sum_probs=96.6
Q ss_pred CCCcccccchhccccccccc---------------ccC---CCCcccccccc-CcchhhHHHHhhChhhHHHHHHHHHHH
Q psy2480 139 PVPAYYDKLNSWLGFTNIGD---------------DLS---TPLSMQTNEKA-IALPVWTTLKSMGQTGIQDILTFNFSL 199 (337)
Q Consensus 139 ~~~~~~d~ln~WLG~~~~p~---------------V~~---~~ld~q~srr~-~AL~lW~~Lq~LG~d~i~~~I~~t~~L 199 (337)
+++|++-++-.|+|.|--=- ..| ..-+++.+|+. +++++|++|+++|.+++.+++++.+++
T Consensus 291 ~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~ 370 (470)
T PLN02263 291 PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRN 370 (470)
T ss_pred CccEEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 37888889999999882111 111 11236788887 489999999999999999999999999
Q ss_pred HHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhHHHHHHHHHHhhc
Q psy2480 200 VESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDKLNSWLGQILQRD 279 (337)
Q Consensus 200 a~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~LNswLgqiL~~~ 279 (337)
+++|.+.|++. +++.+- ++.+++|+|+ .|.+.. ....| .
T Consensus 371 A~~l~~~l~~~-g~~~~~-----------------------~p~s~~V~f~-~p~~~~---------~~~gW---~---- 409 (470)
T PLN02263 371 AHYLKDRLREA-GISAML-----------------------NELSSTVVFE-RPKDEE---------FVRRW---Q---- 409 (470)
T ss_pred HHHHHHHHHhC-CCeEEe-----------------------CCCceEEEEe-cCchHH---------hhcce---E----
Confidence 99999999998 555554 4678999998 332210 00123 1
Q ss_pred CCCcceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhh
Q psy2480 280 VPSVSLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYS 323 (337)
Q Consensus 280 ~~~~~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~i 323 (337)
+.. .+-.++++.....|.+.|++|++-|++....
T Consensus 410 -------L~~---~~~~~Hivvmphv~~~~id~fi~DL~~~~~~ 443 (470)
T PLN02263 410 -------LAC---QGNIAHVVVMPSVTIEKLDYFLKELVEKRST 443 (470)
T ss_pred -------Ecc---CCCcEEEEEcCCCCHHHHHHHHHHHHHHHhh
Confidence 111 1235888877666889999999999887663
No 13
>PLN03032 serine decarboxylase; Provisional
Probab=98.11 E-value=1.8e-05 Score=79.14 Aligned_cols=129 Identities=19% Similarity=0.273 Sum_probs=93.1
Q ss_pred CCCcccccchhcccccc-ccc-----------------ccCCCCccccccc-cCcchhhHHHHhhChhhHHHHHHHHHHH
Q psy2480 139 PVPAYYDKLNSWLGFTN-IGD-----------------DLSTPLSMQTNEK-AIALPVWTTLKSMGQTGIQDILTFNFSL 199 (337)
Q Consensus 139 ~~~~~~d~ln~WLG~~~-~p~-----------------V~~~~ld~q~srr-~~AL~lW~~Lq~LG~d~i~~~I~~t~~L 199 (337)
.+++++-+.-.|+|.|- ... .....-+++-+|+ ++++++|.+|+++|.+++.+++++.+++
T Consensus 224 ~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~ 303 (374)
T PLN03032 224 PIGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRN 303 (374)
T ss_pred CCcEEEECcccccCCCcCeEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 47788888888998661 111 1122234677775 7899999999999999999999999999
Q ss_pred HHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhHH-HHHHHHHHhh
Q psy2480 200 VESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDKL-NSWLGQILQR 278 (337)
Q Consensus 200 a~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~L-NswLgqiL~~ 278 (337)
+++|.+.|++. +++++- ++.+++|+|+-... |.+ ..|
T Consensus 304 a~~l~~~l~~~-~~~~~~-----------------------~p~~~~V~f~~~~~-----------~~~~~~w------- 341 (374)
T PLN03032 304 AHYLKDRLTEA-GLTCRL-----------------------NELSSTVVFERPMD-----------EAFIKKW------- 341 (374)
T ss_pred HHHHHHHHHhC-CCcEEE-----------------------CCCceEEEEcCCCc-----------HhHhhee-------
Confidence 99999999985 666665 46788999985311 100 123
Q ss_pred cCCCcceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHH
Q psy2480 279 DVPSVSLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDA 319 (337)
Q Consensus 279 ~~~~~~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~ 319 (337)
.+.. . +.++|+|.....|.+.|++|++-|++
T Consensus 342 -------~l~~-~--~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 342 -------QLAC-E--GDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred -------eecc-c--CCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 1221 1 12799987766789999999998865
No 14
>PRK02769 histidine decarboxylase; Provisional
Probab=97.89 E-value=9.6e-05 Score=73.89 Aligned_cols=131 Identities=14% Similarity=0.247 Sum_probs=94.8
Q ss_pred CCCcccccchhcccccc-cccc--------------cCCC---Cccccccc-cCcchhhHHHHhhChhhHHHHHHHHHHH
Q psy2480 139 PVPAYYDKLNSWLGFTN-IGDD--------------LSTP---LSMQTNEK-AIALPVWTTLKSMGQTGIQDILTFNFSL 199 (337)
Q Consensus 139 ~~~~~~d~ln~WLG~~~-~p~V--------------~~~~---ld~q~srr-~~AL~lW~~Lq~LG~d~i~~~I~~t~~L 199 (337)
++++++-+.-.|+|.|- ...+ .|.. .++.-+|+ ++++.+|.+|+.+|.+++.+++++.+++
T Consensus 221 ~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~l 300 (380)
T PRK02769 221 GIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDM 300 (380)
T ss_pred CCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 57888888888998662 2221 1111 12345664 6899999999999999999999999999
Q ss_pred HHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhHH-HHHHHHHHhh
Q psy2480 200 VESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDKL-NSWLGQILQR 278 (337)
Q Consensus 200 a~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~L-NswLgqiL~~ 278 (337)
++++.+.|++ .+++++. ++.+++|+|+.. ++ .+ ..|
T Consensus 301 a~~l~~~L~~-~g~~~~~-----------------------~p~~~~v~f~~~-~~-----------~~~~~w------- 337 (380)
T PRK02769 301 AQYAVDRLQA-NGIPAWR-----------------------NPNSITVVFPCP-SE-----------RIWKKW------- 337 (380)
T ss_pred HHHHHHHHHh-CCCEEEc-----------------------CCCceEEEEcCC-CH-----------HHHhCe-------
Confidence 9999999987 5888886 578999999742 11 11 112
Q ss_pred cCCCcceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHh
Q psy2480 279 DVPSVSLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVY 322 (337)
Q Consensus 279 ~~~~~~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~ 322 (337)
.+... +.++|+|.....|.++|++|++.|.....
T Consensus 338 -------~l~~~---~~~~hi~~~~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 338 -------HLATS---GNQAHIITMPHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred -------eEccc---CCEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 12211 13899997777799999999988876543
No 15
>PLN02590 probable tyrosine decarboxylase
Probab=97.67 E-value=6.8e-05 Score=78.44 Aligned_cols=68 Identities=16% Similarity=0.413 Sum_probs=59.1
Q ss_pred cccHHHHhhchhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEeecCCCCCCchhhhhhccCCccccccccc
Q psy2480 27 SMQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILSHGPVSGMGLKEVTSQYLPVQTILESVQ 106 (337)
Q Consensus 27 ~~~~~~kl~aLplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~ils~~~~~~~~~~d~~~~~~~~~~lfe~~~ 106 (337)
+-+...|.+||++|++|+++|.+|+.++|++.+++++.+.+.|.+.++++++. +...
T Consensus 402 ~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~-----------------------~~~l 458 (539)
T PLN02590 402 QISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVT-----------------------TRYF 458 (539)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-----------------------CCce
Confidence 34445778999999999999999999999999999999999999999999992 2335
Q ss_pred eeEEEEeccCC
Q psy2480 107 SCVVFQFVPKD 117 (337)
Q Consensus 107 pvvvFqf~~~~ 117 (337)
+.|+|+|.|+.
T Consensus 459 ~iVcFr~~~~~ 469 (539)
T PLN02590 459 SLVCFRLAPVD 469 (539)
T ss_pred EEEEEEecCCC
Confidence 78999998864
No 16
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=97.67 E-value=6.3e-05 Score=74.94 Aligned_cols=63 Identities=25% Similarity=0.477 Sum_probs=56.6
Q ss_pred cHHHHhhchhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEeecCCCCCCchhhhhhccCCcccccccccee
Q psy2480 29 QTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILSHGPVSGMGLKEVTSQYLPVQTILESVQSC 108 (337)
Q Consensus 29 ~~~~kl~aLplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~ils~~~~~~~~~~d~~~~~~~~~~lfe~~~pv 108 (337)
|...+.++|++|+++|++|.+|+.++|++..++++.+.+.|++.+.++++. +...++
T Consensus 311 ~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~-----------------------~~~~~~ 367 (373)
T PF00282_consen 311 QGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVN-----------------------EPDLNI 367 (373)
T ss_dssp SSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESS-----------------------TTSSSE
T ss_pred cccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEc-----------------------CCCceE
Confidence 445599999999999999999999999999999999999999999999881 345788
Q ss_pred EEEEec
Q psy2480 109 VVFQFV 114 (337)
Q Consensus 109 vvFqf~ 114 (337)
|.|+|.
T Consensus 368 vcFr~k 373 (373)
T PF00282_consen 368 VCFRYK 373 (373)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 999984
No 17
>KOG0629|consensus
Probab=97.66 E-value=0.0002 Score=72.86 Aligned_cols=137 Identities=18% Similarity=0.233 Sum_probs=105.8
Q ss_pred cccccccCcchhhHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccce
Q psy2480 166 MQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQS 245 (337)
Q Consensus 166 ~q~srr~~AL~lW~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~ls 245 (337)
+|-.|+.+.+|+|..+++=|..++-..|+.++++|+.|.+.+++-++.+.|-. .++...
T Consensus 369 iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~---------------------~~pe~~ 427 (510)
T KOG0629|consen 369 IQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFE---------------------LEPEHV 427 (510)
T ss_pred hhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhc---------------------CCCceE
Confidence 78999999999999999999999999999999999999999999999888862 136678
Q ss_pred eEEEEecCCCCC-CCCCcchhhHHHHHHHHHHhhcCCCcceEEEEeeeCc--EEEEEecCCCC-ChhHHHHHHHHHHHHH
Q psy2480 246 CVVFQFVPKDAG-WGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETAAFG--TVLRICPFECS-SGGDYESFLVCLDAQV 321 (337)
Q Consensus 246 vVvFRy~P~~~~-~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~~~G--~~LRfcplnp~-T~edI~~~v~~L~~~~ 321 (337)
.|||=|+|+..- .+.+++...+|-.=.-.+-.+....+-.+|.=...+. -..|.-.-||+ +..|++-++++|+..+
T Consensus 428 nv~fw~vp~~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlg 507 (510)
T KOG0629|consen 428 NVCFWYVPPSLRGWQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLG 507 (510)
T ss_pred EEeeccCchHhccCcccchhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHHHHHhc
Confidence 999999997542 2233455555543222244444555556666666533 48899888887 8999999999999876
Q ss_pred hh
Q psy2480 322 YS 323 (337)
Q Consensus 322 ~i 323 (337)
+-
T Consensus 508 q~ 509 (510)
T KOG0629|consen 508 QD 509 (510)
T ss_pred cC
Confidence 53
No 18
>PLN02880 tyrosine decarboxylase
Probab=97.33 E-value=0.00034 Score=72.23 Aligned_cols=67 Identities=18% Similarity=0.383 Sum_probs=57.9
Q ss_pred ccHHHHhhchhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEeecCCCCCCchhhhhhccCCccccccccce
Q psy2480 28 MQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILSHGPVSGMGLKEVTSQYLPVQTILESVQS 107 (337)
Q Consensus 28 ~~~~~kl~aLplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~ils~~~~~~~~~~d~~~~~~~~~~lfe~~~p 107 (337)
-+...|.+||++|+++|++|.+|+.++|++.+++++.+.+.|.+.++.++++. ...+
T Consensus 355 i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~-----------------------~~~~ 411 (490)
T PLN02880 355 IPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTP-----------------------RIFS 411 (490)
T ss_pred cCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC-----------------------CceE
Confidence 44567789999999999999999999999999999999999999999999921 1256
Q ss_pred eEEEEeccCC
Q psy2480 108 CVVFQFVPKD 117 (337)
Q Consensus 108 vvvFqf~~~~ 117 (337)
.|.|+|.|..
T Consensus 412 iv~Fr~~~~~ 421 (490)
T PLN02880 412 LVCFRLVPPK 421 (490)
T ss_pred EEEEEEeCCC
Confidence 8899998753
No 19
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=97.18 E-value=0.0033 Score=69.82 Aligned_cols=129 Identities=18% Similarity=0.137 Sum_probs=91.8
Q ss_pred ccccccCc----chhhHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccc
Q psy2480 167 QTNEKAIA----LPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILES 242 (337)
Q Consensus 167 q~srr~~A----L~lW~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~ 242 (337)
...+.++. ++.|+-++.||.+++.++.+.++..|.++.+.|++ ..+++-..+ . ..
T Consensus 738 ~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~--~~~~l~~~~---~----------------~~ 796 (939)
T TIGR00461 738 VSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD--HYPILFVGT---L----------------KH 796 (939)
T ss_pred ccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc--cCcccccCC---C----------------Cc
Confidence 44567888 99999999999999999999999999999999987 345553100 0 02
Q ss_pred cceeEEEEecCCCCCCCCCcchhhHHHHHHHHHHhhcCCCcceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHh
Q psy2480 243 VQSCVVFQFVPKDAGWGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVY 322 (337)
Q Consensus 243 ~lsvVvFRy~P~~~~~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~ 322 (337)
...-+||+|.|.... .|..|.-+.+.|++.+--... +. -.+.| ++=+||-+..+.+|||+|++.+.+..+
T Consensus 797 ~~hEfv~~~~~~~~~-------~g~~~~dIakrL~d~G~hapt-~~-~pv~g-~lmiepTE~eskeelD~f~~al~~I~~ 866 (939)
T TIGR00461 797 VAHECILDLRPLKAK-------TGIEAIDVAKRLQDYGFHAPT-LS-FPVPG-TLMVEPTESESLEELDRFCDAMIAIKE 866 (939)
T ss_pred eeEEEEEeccchhhh-------cCCCHHHHHHHHHhCCeeccc-cC-CccCC-eEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 345688999764322 234466666777776653222 21 23456 666777778899999999999988877
Q ss_pred hhhc
Q psy2480 323 SGSQ 326 (337)
Q Consensus 323 il~~ 326 (337)
++..
T Consensus 867 e~~~ 870 (939)
T TIGR00461 867 EINA 870 (939)
T ss_pred HHHH
Confidence 7665
No 20
>PRK05367 glycine dehydrogenase; Provisional
Probab=97.02 E-value=0.0077 Score=67.17 Aligned_cols=123 Identities=14% Similarity=0.101 Sum_probs=80.0
Q ss_pred CcchhhHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEec
Q psy2480 173 IALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFV 252 (337)
Q Consensus 173 ~AL~lW~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~ 252 (337)
.++..|+-++.+|.+++.++.+.++.+++++.+.|++...+.+.. + . .....-.+|++.
T Consensus 756 ~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~--~----------------~---~~~~~e~i~~~~ 814 (954)
T PRK05367 756 ILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDHYPVLYTG--A----------------N---GRVAHECILDLR 814 (954)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhcCccccC--C----------------C---CCcccceEEEee
Confidence 455689999999999999999999999999999998753332221 0 0 012333677775
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHhhcCCCcceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhhhhc
Q psy2480 253 PKDAGWGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYSGSQ 326 (337)
Q Consensus 253 P~~~~~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~il~~ 326 (337)
|-....+. .+.-+.+.|++.+-. +-....... -+||++|-+..+.+||+.|++.+.+...++..
T Consensus 815 ~~~~~~g~-------~~~di~krL~d~G~~--~~t~~~pv~-~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 815 PLKESTGI-------TVDDIAKRLIDYGFH--APTMSFPVA-GTLMVEPTESESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred cccccCCC-------CHHHHHHHHHHCCCe--EeecCCccC-CEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence 43221111 123344555443331 111122223 36999999999999999999999888776654
No 21
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=96.91 E-value=0.015 Score=56.09 Aligned_cols=105 Identities=18% Similarity=0.229 Sum_probs=74.1
Q ss_pred CcchhhHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEec
Q psy2480 173 IALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFV 252 (337)
Q Consensus 173 ~AL~lW~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~ 252 (337)
.+...|.+|+.++.+++.+++++..++++++.+.+++. +++++. +...++|+|++.
T Consensus 265 ~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-----------------------~~~~~~v~~~~~ 320 (371)
T PRK13520 265 GVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER-GFEPVI-----------------------EPVLNIVAFDDP 320 (371)
T ss_pred HHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC-CCEEec-----------------------CCCceEEEEecC
Confidence 46678889999999999999999999999999999987 788543 234678888873
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHhhcCCCcceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHH
Q psy2480 253 PKDAGWGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQV 321 (337)
Q Consensus 253 P~~~~~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~ 321 (337)
+ . .++. +.|.+. ++.+... ..+.++|+++-...|++||+.+++.|++.+
T Consensus 321 --~-~--------~~v~----~~L~~~----gi~v~~~-~~~~~iRis~~~~~t~edi~~~~~~l~~~~ 369 (371)
T PRK13520 321 --N-P--------DEVR----EKLRER----GWRVSVT-RCPEALRIVCMPHVTREHIENFLEDLKEVK 369 (371)
T ss_pred --C-H--------HHHH----HHHHHC----CceeccC-CCCCEEEEEEECCCCHHHHHHHHHHHHHHh
Confidence 1 1 1222 333322 2333221 234689999654458999999999998753
No 22
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=96.56 E-value=0.022 Score=58.51 Aligned_cols=117 Identities=11% Similarity=0.117 Sum_probs=75.3
Q ss_pred cchhhHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecC
Q psy2480 174 ALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVP 253 (337)
Q Consensus 174 AL~lW~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P 253 (337)
++..|.-++.+|.+++.++.++.+++++++.+.|++. +++... ......++|.+..
T Consensus 332 ~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~--~~~~~~----------------------~~~~~~~~~~~~~ 387 (481)
T PRK04366 332 LVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI--YDLPYD----------------------RPCMHEFVLSGKK 387 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--CcccCC----------------------CCeeEEEEEECcc
Confidence 4789999999999999999999999999999999887 333310 1222334444310
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHhhcCCCcceEEEEee---eCcEEEEEecCCCCChhHHHHHHHHHHHHHhhhhc
Q psy2480 254 KDAGWGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETA---AFGTVLRICPFECSSGGDYESFLVCLDAQVYSGSQ 326 (337)
Q Consensus 254 ~~~~~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~---~~G~~LRfcplnp~T~edI~~~v~~L~~~~~il~~ 326 (337)
-..+ +. . +.-+.+.|.+.+- .+.... ..+.++|+|+-+..|.+||+.+++.|++....+.+
T Consensus 388 ~~~~-g~---~----~~~v~~~L~~~Gi----~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~~ 451 (481)
T PRK04366 388 LKET-GV---R----TLDIAKRLLDYGF----HPPTIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAEEAKE 451 (481)
T ss_pred cccc-CC---C----HHHHHHHHHHCCc----cCCccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 0000 00 0 1223344444332 111111 11348999999988999999999999998877654
No 23
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=96.22 E-value=0.0095 Score=62.28 Aligned_cols=66 Identities=12% Similarity=0.356 Sum_probs=56.6
Q ss_pred cHHHHhhchhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEeecCCCCCCchhhhhhccCCcccccccccee
Q psy2480 29 QTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILSHGPVSGMGLKEVTSQYLPVQTILESVQSC 108 (337)
Q Consensus 29 ~~~~kl~aLplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~ils~~~~~~~~~~d~~~~~~~~~~lfe~~~pv 108 (337)
+...+-++|.+|.+++++|.+|+-+.|++..++++.+.+.|++.+++++++.+ ..+.
T Consensus 376 egsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p-----------------------~l~i 432 (522)
T TIGR03799 376 EGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEP-----------------------ELCL 432 (522)
T ss_pred ecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCC-----------------------CccE
Confidence 34455678999999999999999999999999999999999999999999321 2357
Q ss_pred EEEEeccCC
Q psy2480 109 VVFQFVPKD 117 (337)
Q Consensus 109 vvFqf~~~~ 117 (337)
|.|+|.|+.
T Consensus 433 v~Fr~~p~~ 441 (522)
T TIGR03799 433 LTYRYVPEE 441 (522)
T ss_pred EEEEEeChh
Confidence 899999875
No 24
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=96.11 E-value=0.088 Score=50.82 Aligned_cols=104 Identities=20% Similarity=0.271 Sum_probs=73.4
Q ss_pred cCcchhhHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEe
Q psy2480 172 AIALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQF 251 (337)
Q Consensus 172 ~~AL~lW~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy 251 (337)
......|.+|+.++.+++-++.++..++++++.+.|++.+ ++.+. ++..++|.|++
T Consensus 269 ~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~-----------------------~~~~~~v~~~~ 324 (373)
T TIGR03812 269 ASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIG-FEPVI-----------------------EPVLNIVAFEV 324 (373)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEc-----------------------CCCceEEEEEe
Confidence 4467788889999999999999999999999999999885 44332 23467888886
Q ss_pred cCCCCCCCCCcchhhHHHHHHHHHHhhcCCCcceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHH
Q psy2480 252 VPKDAGWGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDA 319 (337)
Q Consensus 252 ~P~~~~~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~ 319 (337)
. + . +.+ .+.|.+. ++.+... ..+.++|+|+....|.+|++.+++.|++
T Consensus 325 ~--~-~--------~~v----~~~L~~~----gi~v~~~-~~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 325 D--D-P--------EEV----RKKLRDR----GWYVSVT-RCPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred C--C-H--------HHH----HHHHHHC----CceeccC-CCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 3 1 0 122 2333222 2334322 2346899999877799999999999975
No 25
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=95.81 E-value=0.18 Score=49.55 Aligned_cols=104 Identities=17% Similarity=0.178 Sum_probs=67.4
Q ss_pred HHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCC
Q psy2480 181 LKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGP 260 (337)
Q Consensus 181 Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~ 260 (337)
+..+...++..+.++..++++.+.+.+++.|++++.. +...+++.|++. +.+
T Consensus 286 l~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~-----------------------~~~~~i~~~~~~--~~~--- 337 (401)
T PRK10874 286 LEWLADIDINQAESWSRSLATLAEDALAKLPGFRSFR-----------------------CQDSSLLAFDFA--GVH--- 337 (401)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeC-----------------------CCCCcEEEEEEC--CcC---
Confidence 3333334445567777889999999999999998875 234578888863 211
Q ss_pred CcchhhHHHHHHHHHHhhcCCCcceEEEEeee---------C-cEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 261 VPAYYDKLNSWLGQILQRDVPSVSLNLTETAA---------F-GTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 261 ~~~y~D~LNswLgqiL~~~~~~~~~~v~et~~---------~-G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
...+.+.|.+. ++.+..... + .-++|+|+-...|.+||+.+++.|++.+..+
T Consensus 338 --------~~~~~~~L~~~----gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 338 --------HSDLVTLLAEY----GIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALELL 399 (401)
T ss_pred --------HHHHHHHHHHC----CcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 01222333221 233333221 1 2489999998889999999999999876543
No 26
>PLN03032 serine decarboxylase; Provisional
Probab=95.67 E-value=0.02 Score=57.44 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=43.5
Q ss_pred ccccccHHHHhhchhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEe
Q psy2480 24 TPLSMQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRIL 78 (337)
Q Consensus 24 ~~~~~~~~~kl~aLplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~il 78 (337)
|...|.+ -.++|.+|.+|+++|.+|+.+++++.+++++.+.+.|.+. +++++
T Consensus 268 ti~gSR~--g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~~~ 319 (374)
T PLN03032 268 TIMGSRN--GHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA-GLTCR 319 (374)
T ss_pred cccCCCc--hHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEE
Confidence 4444433 3789999999999999999999999999999999999885 55555
No 27
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=95.44 E-value=0.033 Score=56.86 Aligned_cols=61 Identities=15% Similarity=0.324 Sum_probs=53.3
Q ss_pred hchhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEeecCCCCCCchhhhhhccCCccccccccceeEEEEec
Q psy2480 35 IALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILSHGPVSGMGLKEVTSQYLPVQTILESVQSCVVFQFV 114 (337)
Q Consensus 35 ~aLplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~ils~~~~~~~~~~d~~~~~~~~~~lfe~~~pvvvFqf~ 114 (337)
+++..|..|+++|.+|+.+++++..++++.+.++|.+.+++++++.. ...+.|.|++.
T Consensus 308 ~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~----------------------~~~~iV~Fr~~ 365 (431)
T TIGR01788 308 QVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDG----------------------SGIPLVAFKLK 365 (431)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCC----------------------CCceEEEEEeC
Confidence 68899999999999999999999999999999999999999999210 13588889998
Q ss_pred cCC
Q psy2480 115 PKD 117 (337)
Q Consensus 115 ~~~ 117 (337)
+..
T Consensus 366 ~~~ 368 (431)
T TIGR01788 366 DDA 368 (431)
T ss_pred CCC
Confidence 753
No 28
>PRK02769 histidine decarboxylase; Provisional
Probab=95.29 E-value=0.028 Score=56.39 Aligned_cols=47 Identities=15% Similarity=0.393 Sum_probs=43.0
Q ss_pred HHHhhchhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEe
Q psy2480 31 NEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRIL 78 (337)
Q Consensus 31 ~~kl~aLplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~il 78 (337)
++-.+++.+|.+|+++|.+|+.+++++..++++.+.+.|++ .+++++
T Consensus 270 R~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~-~g~~~~ 316 (380)
T PRK02769 270 RNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQA-NGIPAW 316 (380)
T ss_pred CCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEE
Confidence 45678999999999999999999999999999999999988 478877
No 29
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=95.22 E-value=0.29 Score=47.99 Aligned_cols=111 Identities=15% Similarity=0.200 Sum_probs=69.2
Q ss_pred hHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCC
Q psy2480 178 WTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAG 257 (337)
Q Consensus 178 W~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~ 257 (337)
+.+++.+...++-.+.++..++++.+.+.+++.++++++.+.. . +...++|+|++.+ .+
T Consensus 282 ~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~-----------------~--~~~~~~v~~~~~~--~~ 340 (403)
T TIGR01979 282 GAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRD-----------------A--EDRGGIISFNVEG--VH 340 (403)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC-----------------c--cccCceEEEEeCC--cC
Confidence 4444444334556678888999999999999999999986210 0 1236788998732 11
Q ss_pred CCCCcchhhHHHHHHHHHHhhcCCCcceEEEEee--------e--CcEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 258 WGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETA--------A--FGTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 258 ~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~--------~--~G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
+..+.+.|.+- ++.+.... . .+.++|+|+--..|.+||+.+++.|++..+.+
T Consensus 341 -----------~~~~~~~L~~~----gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 341 -----------PHDVGTILDEE----GIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred -----------HHHHHHHHhhC----CEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 11122233221 23332211 1 13489999764558999999999999877664
No 30
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=95.16 E-value=0.27 Score=47.53 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=68.3
Q ss_pred HHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCC
Q psy2480 179 TTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGW 258 (337)
Q Consensus 179 ~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~ 258 (337)
.+|+.+...++-.+.++..++++++.+.+.+.++++++.+.. -....++|+|+.. +.+
T Consensus 258 ~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~-------------------~~~~~~~v~~~~~--~~~- 315 (376)
T TIGR01977 258 AGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPAD-------------------PANRVGVVSFTVE--GID- 315 (376)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC-------------------ccccCCeEEEEEC--CCC-
Confidence 344445556666777888999999999999999999886210 0134678889872 222
Q ss_pred CCCcchhhHHHHHHHHHHhhcCCCcceEEEEee------------eCcEEEEEecCCCCChhHHHHHHHHHHH
Q psy2480 259 GPVPAYYDKLNSWLGQILQRDVPSVSLNLTETA------------AFGTVLRICPFECSSGGDYESFLVCLDA 319 (337)
Q Consensus 259 e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~------------~~G~~LRfcplnp~T~edI~~~v~~L~~ 319 (337)
.+. +.+.|.+... +.+.... ....++|+++--..|.+||+.+++.|++
T Consensus 316 ------~~~----~~~~L~~~~g---i~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 316 ------SEE----VADILDEKFD---IATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred ------HHH----HHHHHhccCC---EEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 122 3344433321 3332211 1224899997665699999999999975
No 31
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=95.04 E-value=0.44 Score=46.89 Aligned_cols=107 Identities=17% Similarity=0.194 Sum_probs=69.7
Q ss_pred hHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCC
Q psy2480 178 WTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAG 257 (337)
Q Consensus 178 W~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~ 257 (337)
..+++.+-..++..+.++..++++.+.+.+++.|++++.. +...+++.|++. +.+
T Consensus 280 ~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~-----------------------~~~~~i~~~~~~--~~~ 334 (398)
T TIGR03392 280 SAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFR-----------------------CPGSSLLAFDFA--GVH 334 (398)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeC-----------------------CCCCcEEEEEeC--CcC
Confidence 3344444334555667788889999999999999998775 234578888863 222
Q ss_pred CCCCcchhhHHHHHHHHHHhhcCCCcceEEEEeee---------C-cEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 258 WGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETAA---------F-GTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 258 ~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~~---------~-G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
..-+.+.|.+ -++.+..... + +-++|+|+--..|.+||+.+++.|++.+..+
T Consensus 335 -----------~~~l~~~L~~----~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 335 -----------HSDLAALLAE----SGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred -----------HHHHHHHHHh----CCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence 1112233322 1344443221 1 2389999988889999999999999876643
No 32
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=94.97 E-value=0.26 Score=49.43 Aligned_cols=107 Identities=16% Similarity=0.250 Sum_probs=68.3
Q ss_pred hhHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCC
Q psy2480 177 VWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDA 256 (337)
Q Consensus 177 lW~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~ 256 (337)
.+..|+.+|.+++.++.++..++++.+.+.|++.++++++. ......+++++ |.
T Consensus 338 aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-----------------------~~~~~~~~v~~-~~-- 391 (447)
T PRK00451 338 AAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELFD-----------------------GPFFNEFVVRL-PK-- 391 (447)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEecC-----------------------CCeEEEEEEec-CC--
Confidence 33345668889999999999999999999999999998873 11223345555 11
Q ss_pred CCCCCcchhhHHHHHHHHHHhhcCCCcceEEEEe-eeCcEEEEEecCCCCChhHHHHHHHHHHHH
Q psy2480 257 GWGPVPAYYDKLNSWLGQILQRDVPSVSLNLTET-AAFGTVLRICPFECSSGGDYESFLVCLDAQ 320 (337)
Q Consensus 257 ~~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et-~~~G~~LRfcplnp~T~edI~~~v~~L~~~ 320 (337)
+ .+++..+|.+ .+--.++-+... ....-++|+|+.+..|.+||+++++.|++.
T Consensus 392 ~-------~~~~~~~L~~----~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~ 445 (447)
T PRK00451 392 P-------AEEVNEALLE----KGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEV 445 (447)
T ss_pred C-------HHHHHHHHHh----cCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 1 1344444322 211000111111 011238999998888999999999999864
No 33
>PLN02263 serine decarboxylase
Probab=94.81 E-value=0.057 Score=56.01 Aligned_cols=44 Identities=18% Similarity=0.307 Sum_probs=40.3
Q ss_pred hhchhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEe
Q psy2480 34 AIALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRIL 78 (337)
Q Consensus 34 l~aLplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~il 78 (337)
.++|.+|.+|+++|.+|+.++|++.+.+++.+.+.|.+. +++.+
T Consensus 343 ~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~-g~~~~ 386 (470)
T PLN02263 343 HAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA-GISAM 386 (470)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEE
Confidence 358999999999999999999999999999999999987 56666
No 34
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=94.74 E-value=0.37 Score=48.05 Aligned_cols=107 Identities=17% Similarity=0.239 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchh
Q psy2480 186 QTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYY 265 (337)
Q Consensus 186 ~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~ 265 (337)
..++-.+.++..++++++.+.|++.++++++.+.+. +. +...++|.|++. +.+ .
T Consensus 304 ~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~---------------~~--~~r~~~v~~~~~--~~~-------~ 357 (424)
T PLN02855 304 EIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPS---------------EG--VGRAALCAFNVE--GIH-------P 357 (424)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcc---------------cc--cCcccEEEEEEC--CcC-------H
Confidence 346667778888999999999999999999862110 00 134678899863 211 0
Q ss_pred hHHHHHHHHHHhhcCCCcceEEEEee--------eCc--EEEEEecCCCCChhHHHHHHHHHHHHHhhhh
Q psy2480 266 DKLNSWLGQILQRDVPSVSLNLTETA--------AFG--TVLRICPFECSSGGDYESFLVCLDAQVYSGS 325 (337)
Q Consensus 266 D~LNswLgqiL~~~~~~~~~~v~et~--------~~G--~~LRfcplnp~T~edI~~~v~~L~~~~~il~ 325 (337)
+ .+.+.|.+.. ++.+.... .-| -++|+|+--.-|.+||+.+++.|++.+..++
T Consensus 358 ~----~v~~~L~~~~---gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~ 420 (424)
T PLN02855 358 T----DLSTFLDQQH---GVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFFS 420 (424)
T ss_pred H----HHHHHhcccC---CEEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 2223332221 23333211 112 4899999766799999999999998876653
No 35
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=94.56 E-value=0.25 Score=48.92 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCcccccccc-ceeEEEEecCCCCCCCCCcchhh
Q psy2480 188 GIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESV-QSCVVFQFVPKDAGWGPVPAYYD 266 (337)
Q Consensus 188 ~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~-lsvVvFRy~P~~~~~e~~~~y~D 266 (337)
++-.+.++.-++++.+++.+++.++++++...+ +.. .+++.|++...+..
T Consensus 269 G~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~--------------------~~~s~~i~~~~~~~~~~~--------- 319 (378)
T PRK03080 269 GLDALIARTAANASVLYDWAEKTPWATPLVADP--------------------ATRSNTSVTLDFVDAQAA--------- 319 (378)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcccccCCc--------------------cccCccEEEEEcCCchHH---------
Confidence 566677888889999999999999888775111 122 35788876321000
Q ss_pred HHHHHHHHHHhhcCCCcceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhhhhcc
Q psy2480 267 KLNSWLGQILQRDVPSVSLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYSGSQG 327 (337)
Q Consensus 267 ~LNswLgqiL~~~~~~~~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~il~~t 327 (337)
.+.-+...+.+..- -+........+-++|+|+..-.|.+||+.+++.|++..+.+++.
T Consensus 320 -~~~~~~~~l~~~~i--~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~~~ 377 (378)
T PRK03080 320 -VDAAAVAKLLRENG--AVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFERLKAA 377 (378)
T ss_pred -HHHHHHHHHHHcCC--eeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 01111122222111 01111111123589999887779999999999999988877654
No 36
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=94.43 E-value=0.079 Score=56.62 Aligned_cols=69 Identities=17% Similarity=0.260 Sum_probs=51.3
Q ss_pred hhchhhHHHHHhc--CchhHHHHHHHHHHHHHHHHHhhccCCceEEeecCCCCCCchhhhhhccCCccccccccceeEEE
Q psy2480 34 AIALPVWTTLKSM--GQTGIQDILTFNFSLVESVRQKLSEYPCLRILSHGPVSGMGLKEVTSQYLPVQTILESVQSCVVF 111 (337)
Q Consensus 34 l~aLplW~alQ~L--g~~~I~~ri~~Af~ls~~l~~~L~~~~~I~ils~~~~~~~~~~d~~~~~~~~~~lfe~~~pvvvF 111 (337)
.+||.+|+++|++ |.+|.-+.|.+..++++.+.+.|.+.+ +++... .+ .+..+.+...+.|+|
T Consensus 435 a~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~-~~~~~~------~~--------el~~~~~pdlniV~F 499 (608)
T TIGR03811 435 ATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLE-FKVGDK------EI--------EVHPLTKPDFNMVDY 499 (608)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcc-cccCCC------Ce--------eEEecCCCCcceEEE
Confidence 5699999999999 999999999999999999999998852 222100 01 111122445678999
Q ss_pred EeccCC
Q psy2480 112 QFVPKD 117 (337)
Q Consensus 112 qf~~~~ 117 (337)
.|.|++
T Consensus 500 r~~~~g 505 (608)
T TIGR03811 500 VFNEKG 505 (608)
T ss_pred EEecCC
Confidence 999876
No 37
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=94.25 E-value=0.096 Score=54.11 Aligned_cols=68 Identities=19% Similarity=0.372 Sum_probs=59.8
Q ss_pred ccccccHHHHhhchhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEeecCCCCCCchhhhhhccCCcccccc
Q psy2480 24 TPLSMQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILSHGPVSGMGLKEVTSQYLPVQTILE 103 (337)
Q Consensus 24 ~~~~~~~~~kl~aLplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~ils~~~~~~~~~~d~~~~~~~~~~lfe 103 (337)
|-++|++.. +++-.|..+++||++|..+.+.+..++++.+.+.|.+.+..++++ +
T Consensus 315 ti~~sr~~~--~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~-----------------------~ 369 (460)
T COG0076 315 TILGSRPGR--QALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVN-----------------------E 369 (460)
T ss_pred eEeeccchH--HHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeec-----------------------C
Confidence 456788887 899999999999999999999999999999999999999999982 2
Q ss_pred ccceeEEEEeccC
Q psy2480 104 SVQSCVVFQFVPK 116 (337)
Q Consensus 104 ~~~pvvvFqf~~~ 116 (337)
-..|+|.|++.+.
T Consensus 370 p~l~~V~fr~~~~ 382 (460)
T COG0076 370 PELPIVAFRLKDD 382 (460)
T ss_pred CccceEEEEcCCc
Confidence 3689999999443
No 38
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=94.09 E-value=0.3 Score=47.65 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=66.3
Q ss_pred chhhHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCC
Q psy2480 175 LPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPK 254 (337)
Q Consensus 175 L~lW~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~ 254 (337)
...|..++.++.+++.++.++..++++++.+.|++.+...... ....+.|.|++.+.
T Consensus 292 ~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-----------------------~~~~~~v~~~~~~~ 348 (398)
T cd00613 292 LMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVLPFN-----------------------GPFFHEFVLRLPPL 348 (398)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC-----------------------CCeeEEEEEEcCCc
Confidence 3566667778888999999999999999999999887654211 13345567776421
Q ss_pred -CCCCCCCcchhhHHHHHHHHHHhhcCCCcceEEEEeee-CcEEEEEecCCCCChhHHHHHHHHH
Q psy2480 255 -DAGWGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETAA-FGTVLRICPFECSSGGDYESFLVCL 317 (337)
Q Consensus 255 -~~~~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~~-~G~~LRfcplnp~T~edI~~~v~~L 317 (337)
+. ..+++. +.|.+. ++.+..... ++-+||+||--..|.+||+++++.|
T Consensus 349 ~~~-------~~~~~~----~~L~~~----gi~~~~~~~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 349 YGI-------RAEDLA----KALIDG----GFHAPTMYLPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred chH-------HHHHHH----Hhhhhc----CccccccccCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 11 112222 333322 122222112 3468999995555999999998764
No 39
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=94.05 E-value=0.44 Score=46.12 Aligned_cols=106 Identities=15% Similarity=0.234 Sum_probs=70.6
Q ss_pred cchhhHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecC
Q psy2480 174 ALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVP 253 (337)
Q Consensus 174 AL~lW~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P 253 (337)
.+.+|.+++.++..++..+.++..++++++.+.+++.|+++++.. + ....++++|++.
T Consensus 258 ~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~--------------------~~~~~~~~~~~~- 315 (373)
T cd06453 258 AIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGD-A--------------------EDRAGVVSFNLE- 315 (373)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC-c--------------------cccCCeEEEEEC-
Confidence 455677788888788888888999999999999999999998851 1 123567788762
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHhhcCCCcceEEEEee---------e-CcEEEEEecCCCCChhHHHHHHHHH
Q psy2480 254 KDAGWGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETA---------A-FGTVLRICPFECSSGGDYESFLVCL 317 (337)
Q Consensus 254 ~~~~~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~---------~-~G~~LRfcplnp~T~edI~~~v~~L 317 (337)
+.+ .++ +.+.|.+. ++.+.... . ..-++|+|+-...|.+||+++++.|
T Consensus 316 -~~~-------~~~----i~~~l~~~----gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 316 -GIH-------PHD----VATILDQY----GIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred -CcC-------HHH----HHHHHHHC----CEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 211 011 22233221 23332211 1 1248999999777999999999864
No 40
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=93.70 E-value=1.4 Score=42.31 Aligned_cols=105 Identities=19% Similarity=0.294 Sum_probs=64.8
Q ss_pred HHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEE-EEecCCCCC
Q psy2480 179 TTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVV-FQFVPKDAG 257 (337)
Q Consensus 179 ~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVv-FRy~P~~~~ 257 (337)
.+++.+...++..+.++..++++.+.+.|++. ++++... + ....+.++ |++ |++.+
T Consensus 247 aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~--------------------~~~~~~~~~~~~-~~~~~ 303 (356)
T cd06451 247 EALDLILEEGLENRWARHRRLAKALREGLEAL-GLKLLAK-P--------------------ELRSPTVTAVLV-PEGVD 303 (356)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccC-c--------------------ccCCCceEEEEC-CCCCC
Confidence 44444555677778888889999999999887 7777641 0 11133443 343 43321
Q ss_pred CCCCcchhhHHHHHHHHHHhhcCCCcceEEEEee--eCcEEEEEecCCCCChhHHHHHHHHHHHH
Q psy2480 258 WGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETA--AFGTVLRICPFECSSGGDYESFLVCLDAQ 320 (337)
Q Consensus 258 ~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~--~~G~~LRfcplnp~T~edI~~~v~~L~~~ 320 (337)
.+++.+ .|.+.+ ++.+.... ..+.++|+|+-...|.+||+++++.|++.
T Consensus 304 -------~~~~~~----~L~~~~---gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~ 354 (356)
T cd06451 304 -------GDEVVR----RLMKRY---NIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEA 354 (356)
T ss_pred -------HHHHHH----HHHHhC---CEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 133333 222221 24443322 23459999998888899999999999874
No 41
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=93.60 E-value=1.1 Score=44.41 Aligned_cols=96 Identities=13% Similarity=0.224 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhH
Q psy2480 188 GIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDK 267 (337)
Q Consensus 188 ~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~ 267 (337)
++-.+.++.-++++++.+.+++.+++++..+ ....++|.|.+. .... +.
T Consensus 298 g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~----------------------~~~~~iv~~~~~-~~~~--------~~ 346 (406)
T PRK09295 298 GLNNIAEYEQNLMHYALSQLESVPDLTLYGP----------------------QNRLGVIAFNLG-KHHA--------YD 346 (406)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC----------------------CCCceEEEEEEC-CcCH--------HH
Confidence 4445556777899999999999999998862 123578888863 1111 11
Q ss_pred HHHHHHHHHhhcCCCcceEEEEee--------eC--cEEEEEecCCCCChhHHHHHHHHHHHHHh
Q psy2480 268 LNSWLGQILQRDVPSVSLNLTETA--------AF--GTVLRICPFECSSGGDYESFLVCLDAQVY 322 (337)
Q Consensus 268 LNswLgqiL~~~~~~~~~~v~et~--------~~--G~~LRfcplnp~T~edI~~~v~~L~~~~~ 322 (337)
+.+.|.+. ++.+.... .- +.++|+|+---.|.+||+.+++.|++...
T Consensus 347 ----~~~~L~~~----gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 347 ----VGSFLDNY----GIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred ----HHHHHHhC----CeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 22333221 23332211 11 13799999877799999999999998654
No 42
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=92.94 E-value=0.92 Score=44.81 Aligned_cols=101 Identities=19% Similarity=0.198 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhH
Q psy2480 188 GIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDK 267 (337)
Q Consensus 188 ~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~ 267 (337)
++-.+.++.-++++.+.+.+++.+.++++...+ . .....+.+|.| |++.+
T Consensus 258 g~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~----------------~---~~s~~v~~v~~-~~g~~---------- 307 (361)
T TIGR01366 258 GLDWAVARTADSSSRLYSWAQERPYATPFVTDP----------------G---KRSQVVGTIDF-VDDID---------- 307 (361)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCh----------------h---hcccceEEEEC-CCccC----------
Confidence 355566788899999999999999887764111 0 00112234555 45543
Q ss_pred HHHHHHHHHhhcCCCcceEEEEe--eeCcEEEEEecCCCCChhHHHHHHHHHHHHHhh
Q psy2480 268 LNSWLGQILQRDVPSVSLNLTET--AAFGTVLRICPFECSSGGDYESFLVCLDAQVYS 323 (337)
Q Consensus 268 LNswLgqiL~~~~~~~~~~v~et--~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~i 323 (337)
..-+.+.|.+. ++.+... ...+.++|++.....|.+||+.+++.|++.++.
T Consensus 308 -~~~v~~~L~~~----gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 308 -AATVAKILRAN----GIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred -HHHHHHHHHHC----CCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence 11233444221 1333221 223458999999988999999999999997654
No 43
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=92.43 E-value=1.6 Score=42.59 Aligned_cols=33 Identities=9% Similarity=0.079 Sum_probs=28.9
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHhhhhc
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVYSGSQ 326 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~il~~ 326 (337)
+-++|+|+---.|.+||+.+++.|++.+..++.
T Consensus 346 ~~~iR~s~~~~~t~~did~~~~~l~~~~~~~~~ 378 (382)
T TIGR03403 346 HTAIRLSLSRFTTEEEIDYTIEVFKKAVQRLRA 378 (382)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 358999998888999999999999998877764
No 44
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=92.15 E-value=0.38 Score=45.85 Aligned_cols=43 Identities=23% Similarity=0.487 Sum_probs=41.5
Q ss_pred chhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEe
Q psy2480 36 ALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRIL 78 (337)
Q Consensus 36 aLplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~il 78 (337)
++.+|.+++++|.+++-+++++..++++.+.+.|+++++++++
T Consensus 231 ~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 273 (345)
T cd06450 231 ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELL 273 (345)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence 8899999999999999999999999999999999999999887
No 45
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=91.83 E-value=1.8 Score=42.68 Aligned_cols=96 Identities=11% Similarity=0.159 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccc-eeEEEEecCCCCCCCCCcchhh
Q psy2480 188 GIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQ-SCVVFQFVPKDAGWGPVPAYYD 266 (337)
Q Consensus 188 ~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~l-svVvFRy~P~~~~~e~~~~y~D 266 (337)
++-.+.++.-++++.+.+.+++.+++......+ +... +++.|.+.... .+
T Consensus 248 G~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~--------------------~~rs~~v~sf~~~~~~---------~~ 298 (349)
T TIGR01364 248 GVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDP--------------------RNRSRMNVVFTLGNEE---------LE 298 (349)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCH--------------------HHcCCeEEEEecCChh---------Hh
Confidence 577888888999999999999999865553100 1233 56888763221 00
Q ss_pred HHHHHHHHHHhhcCCCcceEEEEee--eCcEEEEEecCCCCChhHHHHHHHHHHHHH
Q psy2480 267 KLNSWLGQILQRDVPSVSLNLTETA--AFGTVLRICPFECSSGGDYESFLVCLDAQV 321 (337)
Q Consensus 267 ~LNswLgqiL~~~~~~~~~~v~et~--~~G~~LRfcplnp~T~edI~~~v~~L~~~~ 321 (337)
+..+ +++.+.+ + ++... ..| ++|+|+.+-.|.+||+.+++.|++..
T Consensus 299 --~~~~-~~~~~~G----i-~~~~~~~~~g-~vRvS~~~~nt~edid~l~~al~~~~ 346 (349)
T TIGR01364 299 --KRFL-KEAEERG----L-VSLKGHRSVG-GMRASIYNAMPLEGVQALVDFMKEFQ 346 (349)
T ss_pred --HHHH-HHHHHCC----C-cccCCccccC-eeEEECcCCCCHHHHHHHHHHHHHHH
Confidence 1111 2222222 1 11111 123 89999988889999999999999743
No 46
>PLN02409 serine--glyoxylate aminotransaminase
Probab=91.37 E-value=3.3 Score=41.28 Aligned_cols=103 Identities=15% Similarity=0.158 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccc-eeEEEEecCCCCCCCCCcchh
Q psy2480 187 TGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQ-SCVVFQFVPKDAGWGPVPAYY 265 (337)
Q Consensus 187 d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~l-svVvFRy~P~~~~~e~~~~y~ 265 (337)
.++-.+.++.-.+++.+.+.+++. +++++...+ +... .+++|++ |++.+.
T Consensus 269 ~G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~--------------------~~~s~~v~~~~~-p~~~~~------- 319 (401)
T PLN02409 269 EGLENVIARHARLGEATRLAVEAW-GLKLCTKKP--------------------EWRSDTVTAVVV-PEGIDS------- 319 (401)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCCh--------------------hhcccceEEEeC-CCCCCH-------
Confidence 455666778888999999999876 788886211 1224 3455766 555430
Q ss_pred hHHHHHHHHHHhhcCCCcceEEEEee--eCcEEEEEecCCCCChhHHHHHHHHHHHHHhhhh
Q psy2480 266 DKLNSWLGQILQRDVPSVSLNLTETA--AFGTVLRICPFECSSGGDYESFLVCLDAQVYSGS 325 (337)
Q Consensus 266 D~LNswLgqiL~~~~~~~~~~v~et~--~~G~~LRfcplnp~T~edI~~~v~~L~~~~~il~ 325 (337)
+ .+.+.+.+... +.+.... ..|.++|++..-..+.+||..+++.|++.+..+.
T Consensus 320 ~----~l~~~l~~~~~---i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 320 A----EIVKNAWKKYN---LSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred H----HHHHHHHHhCC---EEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 1 22233333333 6666554 3578999999998899999999999998776554
No 47
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=91.31 E-value=1.9 Score=42.14 Aligned_cols=93 Identities=17% Similarity=0.213 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhHH
Q psy2480 189 IQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDKL 268 (337)
Q Consensus 189 i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~L 268 (337)
+..+.++..++++++.+.|++.++++++...+ -+...+++.|+.. +.+ .+.+
T Consensus 292 ~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~--~~~-------~~~l 343 (397)
T TIGR01976 292 FQAIDAYENRLAEYLLVGLSDLPGVTLYGVAR-------------------LAARVPTVSFTVH--GLP-------PQRV 343 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC-------------------ccCCCceEEEEeC--CcC-------HHHH
Confidence 45567778889999999999999999986210 0245677877763 211 0222
Q ss_pred HHHHHHHHhhcCCCcceEEEEe-------------eeCcEEEEEecCCCCChhHHHHHHHHH
Q psy2480 269 NSWLGQILQRDVPSVSLNLTET-------------AAFGTVLRICPFECSSGGDYESFLVCL 317 (337)
Q Consensus 269 NswLgqiL~~~~~~~~~~v~et-------------~~~G~~LRfcplnp~T~edI~~~v~~L 317 (337)
- +.|.+. ++.+... ...+.++|+|+--.-|.+||+.+++.|
T Consensus 344 ~----~~L~~~----gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 344 V----RRLADQ----GIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred H----HHHHHC----CeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 2 333222 3444432 113458999998877999999998764
No 48
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=90.96 E-value=2.1 Score=40.51 Aligned_cols=141 Identities=12% Similarity=0.018 Sum_probs=76.3
Q ss_pred CCcccccchhccccccccccc-CCCC-c-ccc-------ccccCcchhhHHHHhhChhhHHHHHHHHHHHHHHHHHHHhh
Q psy2480 140 VPAYYDKLNSWLGFTNIGDDL-STPL-S-MQT-------NEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSE 209 (337)
Q Consensus 140 ~~~~~d~ln~WLG~~~~p~V~-~~~l-d-~q~-------srr~~AL~lW~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~ 209 (337)
.+-+.-++..|+|.+.-..+. .+.+ + ... .-+..++..+..+..|...+..+++++....++++.+.|++
T Consensus 187 ~d~~~~s~sK~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~ 266 (338)
T cd06502 187 VDSVSFCLSKGGGAPVGAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEE 266 (338)
T ss_pred CCEEEEeccccCCCccceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh
Confidence 344556888888876522221 1111 1 000 01112233344444454445667788888999999999988
Q ss_pred CCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhHHHHHHHHHHhhcCCCcceEEEE
Q psy2480 210 YPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDKLNSWLGQILQRDVPSVSLNLTE 289 (337)
Q Consensus 210 ~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~e 289 (337)
.+. .+. +...+.+.|++.. + . ....+ |.+.+.+. ..-++.+..
T Consensus 267 ~~~-~~~------------------------~~~~~~~~v~~~~-~-~-----~~~~~----l~~~l~~~-~~~gi~~~~ 309 (338)
T cd06502 267 LGG-LES------------------------EVQTNIVLLDPVE-A-N-----AVFVE----LSKEAIER-RGEGVLFYA 309 (338)
T ss_pred cCC-Ccc------------------------cccCCeEEEecCC-c-c-----HHHHH----HHHHHHHh-hhCCEEEEe
Confidence 754 222 3556777777521 1 1 11122 22222211 111333433
Q ss_pred eeeCcEEEEEecCCCCChhHHHHHHHHHHH
Q psy2480 290 TAAFGTVLRICPFECSSGGDYESFLVCLDA 319 (337)
Q Consensus 290 t~~~G~~LRfcplnp~T~edI~~~v~~L~~ 319 (337)
. ++.+|||||--..|.+|++++++.+++
T Consensus 310 ~--~~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 310 W--GEGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred c--CCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 2 237899999555589999999998864
No 49
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=90.94 E-value=1.8 Score=42.13 Aligned_cols=91 Identities=21% Similarity=0.285 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhh
Q psy2480 187 TGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYD 266 (337)
Q Consensus 187 d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D 266 (337)
.++-.+.++..++++++.+.|++.+.++++.+.+ -+...++++|.+. +.+ .
T Consensus 271 ~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~-------------------~~~~~~i~~~~~~--~~~----~---- 321 (371)
T PF00266_consen 271 IGIERIRERIRELAEYLREALEELPGIEVLGPDD-------------------EPRRPSIVSFNLP--GSD----A---- 321 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSC-------------------GGBGTTEEEEEET--TSS----H----
T ss_pred cccccchhhhhhHHHHHHhhhhcCCceeEeeecc-------------------cccccceEEEeec--CCC----H----
Confidence 4566777889999999999999999999976211 1467889999993 222 0
Q ss_pred HHHHHHHHHHhhcCCCcceEEEEeeeC----------cEEEEEecCCCCChhHHHHH
Q psy2480 267 KLNSWLGQILQRDVPSVSLNLTETAAF----------GTVLRICPFECSSGGDYESF 313 (337)
Q Consensus 267 ~LNswLgqiL~~~~~~~~~~v~et~~~----------G~~LRfcplnp~T~edI~~~ 313 (337)
..+.+.|... . +.+...... +-++|+++-.-.|.+||+++
T Consensus 322 ---~~~~~~L~~~-~---I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 322 ---DDVVKYLEER-G---IAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp ---HHHHHHHHHH-T---EEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred ---HHHHHHHhhc-C---EEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 1233344444 2 444442221 26999996666699999975
No 50
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=90.37 E-value=1.7 Score=43.03 Aligned_cols=33 Identities=3% Similarity=0.004 Sum_probs=28.5
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHhhhhc
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVYSGSQ 326 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~il~~ 326 (337)
+-++|+|+-...|.+||+.+++.|++.+..++.
T Consensus 348 ~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~~ 380 (402)
T TIGR02006 348 HSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLRE 380 (402)
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 359999997777999999999999998877654
No 51
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=90.30 E-value=3.9 Score=40.61 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhC----CCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCc
Q psy2480 187 TGIQDILTFNFSLVESIRQKLSEY----PCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVP 262 (337)
Q Consensus 187 d~i~~~I~~t~~La~~~~e~L~~~----p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~ 262 (337)
.++-.+.++.-++++++.+.+++. ++++++.+.+ . ....++|+|++. . +
T Consensus 305 ~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~---------------~----~~r~~~v~~~~~--~-~----- 357 (406)
T TIGR01814 305 AGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRD---------------H----AQRGCQLSLTHP--V-P----- 357 (406)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCC---------------h----hhcCCeEEEEec--C-C-----
Confidence 345566677888999999988875 4688886210 0 123568888863 1 1
Q ss_pred chhhHHHHHHHHHHhhcCCCcceEEEEeeeCcEEEEEecCC-CCChhHHHHHHHHHHHHH
Q psy2480 263 AYYDKLNSWLGQILQRDVPSVSLNLTETAAFGTVLRICPFE-CSSGGDYESFLVCLDAQV 321 (337)
Q Consensus 263 ~y~D~LNswLgqiL~~~~~~~~~~v~et~~~G~~LRfcpln-p~T~edI~~~v~~L~~~~ 321 (337)
...+.+.|.+. ++.+. ...+.++|+||.. ..|.+||+.+++.|++.+
T Consensus 358 ------~~~~~~~L~~~----gi~v~--~~~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 358 ------GKAVFQALIKR----GVIGD--KREPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred ------HHHHHHHHHHC----CEEEe--ccCCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 11233444322 23332 1233599999975 458999999999998753
No 52
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=90.18 E-value=4.5 Score=39.40 Aligned_cols=102 Identities=13% Similarity=0.049 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh-CCCeEEeecCCCCCCcceeeeccccCccccccccc-eeEEEEecCCCCCCCCCcch
Q psy2480 187 TGIQDILTFNFSLVESIRQKLSE-YPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQ-SCVVFQFVPKDAGWGPVPAY 264 (337)
Q Consensus 187 d~i~~~I~~t~~La~~~~e~L~~-~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~l-svVvFRy~P~~~~~e~~~~y 264 (337)
+.+-++.++.-++++.+.+.+.+ .|++++..+. .... .++.|.+.. .+
T Consensus 251 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~--~~------- 300 (379)
T TIGR03402 251 EHLEEENTRVRALRDRLEAGLLARIPDARLNGDP---------------------TKRLPNTVNISFEY--IE------- 300 (379)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCC---------------------ccCCCCEEEEEecC--CC-------
Confidence 44455667788889999999885 8999887521 1122 367776632 11
Q ss_pred hhHHHHHHHHHHhhcCCCcceEEEEee---------------------eCcEEEEEecCCCCChhHHHHHHHHHHHHHhh
Q psy2480 265 YDKLNSWLGQILQRDVPSVSLNLTETA---------------------AFGTVLRICPFECSSGGDYESFLVCLDAQVYS 323 (337)
Q Consensus 265 ~D~LNswLgqiL~~~~~~~~~~v~et~---------------------~~G~~LRfcplnp~T~edI~~~v~~L~~~~~i 323 (337)
...+.+.|.+ -++.+.... ...-++|+|+--..|.+||+++++.|++.+..
T Consensus 301 ----~~~~~~~l~~----~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~ 372 (379)
T TIGR03402 301 ----GEAILLLLDM----EGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIAR 372 (379)
T ss_pred ----HHHHHHhhcc----CCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 0122233321 124443211 11247999997778999999999999998877
Q ss_pred hhc
Q psy2480 324 GSQ 326 (337)
Q Consensus 324 l~~ 326 (337)
+..
T Consensus 373 ~~~ 375 (379)
T TIGR03402 373 LRA 375 (379)
T ss_pred HHh
Confidence 653
No 53
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=90.18 E-value=5.3 Score=40.66 Aligned_cols=106 Identities=20% Similarity=0.214 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhH
Q psy2480 188 GIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDK 267 (337)
Q Consensus 188 ~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~ 267 (337)
++.++-.+--+|++++.+.|++.|++++..+.+ +...+++.|+...... .+....
T Consensus 297 g~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~--------------------~~r~~~vsF~v~~~~~-----~dv~~~ 351 (405)
T COG0520 297 GMEAIEAHERELTEYLLEGLSELPGVEIYGPPD--------------------ADRGGIVSFNVKGIHP-----HDVATL 351 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc--------------------ccCceEEEEEeCCCCH-----HHHHHH
Confidence 455777888899999999999999999998311 2478999999854321 122233
Q ss_pred HHHHHHHHHhhcCCCcceEEEEeeeCc--EEEEEecCCCCChhHHHHHHHHHHHHHh
Q psy2480 268 LNSWLGQILQRDVPSVSLNLTETAAFG--TVLRICPFECSSGGDYESFLVCLDAQVY 322 (337)
Q Consensus 268 LNswLgqiL~~~~~~~~~~v~et~~~G--~~LRfcplnp~T~edI~~~v~~L~~~~~ 322 (337)
|+.. + |.-|.+....--+ ++..| .++|.|+---.|.+||+.+++.|+...+
T Consensus 352 L~~~-g-I~vr~g~~ca~p~--~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 352 LDEK-G-IAVRAGHHCAQPL--HRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred HHhC-C-eEEEeccccccHH--HHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 3320 0 2222221110000 11112 1399999888899999999999998654
No 54
>PLN02721 threonine aldolase
Probab=89.90 E-value=3.8 Score=38.99 Aligned_cols=96 Identities=16% Similarity=0.189 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCeEE-eecCCCCCCcceeeeccccCccccccccceeEEEEecCCC-CCCCCCcch
Q psy2480 187 TGIQDILTFNFSLVESIRQKLSEYPCLRI-LSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKD-AGWGPVPAY 264 (337)
Q Consensus 187 d~i~~~I~~t~~La~~~~e~L~~~p~Lei-L~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~-~~~e~~~~y 264 (337)
+...+.+++..++++.+.+.|++.+++++ +. +...+.+.|++.+.. .+
T Consensus 254 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~------- 303 (353)
T PLN02721 254 QENVPKLEDDHKKAKLLAEGLNQIKGLRVNVA-----------------------AVETNIVYFDITDGSRIT------- 303 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcEEecC-----------------------CccceEEEEEccCCcccc-------
Confidence 34455677777888999999999988875 43 233456777764211 11
Q ss_pred hhHHHHHHHHHHhhcCCCcceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHh
Q psy2480 265 YDKLNSWLGQILQRDVPSVSLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVY 322 (337)
Q Consensus 265 ~D~LNswLgqiL~~~~~~~~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~ 322 (337)
.+. +.+.|.+. ++.+... +..++|+|+--..+.+||+++++.|++.+.
T Consensus 304 ~~~----~~~~L~~~----gi~v~~~--~~~~lR~~~~~~~~~~~i~~~~~~l~~~~~ 351 (353)
T PLN02721 304 AEK----LCKSLEEH----GVLLMPG--NSSRIRVVTHHQISDSDVQYTLSCFQQAAL 351 (353)
T ss_pred HHH----HHHHHHhC----CcEEecC--CCceEEEEecCcCCHHHHHHHHHHHHHHhh
Confidence 122 23333321 2444432 335999998545589999999999988654
No 55
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=89.88 E-value=4 Score=46.30 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=71.5
Q ss_pred hHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCC
Q psy2480 178 WTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAG 257 (337)
Q Consensus 178 W~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~ 257 (337)
|.=++.||.+++.+.-+.++.++.++.+.|+...++.+.. ++ |.. ..-.++...+-..+
T Consensus 793 ~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~--~~-~~~------------------~hEfv~~~~~l~~~ 851 (993)
T PLN02414 793 YTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYPVLFRG--KN-GTC------------------AHEFIIDLRPFKNT 851 (993)
T ss_pred HHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccC--CC-CCe------------------eeeEEEeccccccc
Confidence 6667779999999999999999999999998754443332 00 010 11111222211100
Q ss_pred CCCCcchhhHHHHHHHHHHhhcCCCcceEEEEeee-CcEEEEEecCCCCChhHHHHHHHHHHHHHhhhhc
Q psy2480 258 WGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETAA-FGTVLRICPFECSSGGDYESFLVCLDAQVYSGSQ 326 (337)
Q Consensus 258 ~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~~-~G~~LRfcplnp~T~edI~~~v~~L~~~~~il~~ 326 (337)
.+. ..+.+. +.|. +.. +....... .+-+||+||-+..+.+||++|++.|.+...+...
T Consensus 852 ~g~---~~~di~----krL~-d~G---ihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~~ 910 (993)
T PLN02414 852 AGI---EPEDVA----KRLM-DYG---FHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAD 910 (993)
T ss_pred cCC---CHHHHH----HHHH-HcC---cEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 011 113344 3444 332 22222222 3568999999999999999999999888776653
No 56
>KOG1383|consensus
Probab=88.33 E-value=0.93 Score=47.13 Aligned_cols=43 Identities=16% Similarity=0.380 Sum_probs=41.1
Q ss_pred chhhHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEee
Q psy2480 175 LPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILS 217 (337)
Q Consensus 175 L~lW~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~ 217 (337)
.--|.+|..+|.+|+++..++.++.++.+++.+++.+++.++.
T Consensus 338 a~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~g 380 (491)
T KOG1383|consen 338 AAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVG 380 (491)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecC
Confidence 4569999999999999999999999999999999999999998
No 57
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=87.21 E-value=11 Score=36.50 Aligned_cols=96 Identities=9% Similarity=-0.004 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccce-eEEEEecCCC-CCCCCCcchhh
Q psy2480 189 IQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQS-CVVFQFVPKD-AGWGPVPAYYD 266 (337)
Q Consensus 189 i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~ls-vVvFRy~P~~-~~~e~~~~y~D 266 (337)
+-++.++..++++.+.+.|++. +++++... +...+ ++.|++.+.. .+
T Consensus 262 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~--------- 310 (363)
T TIGR02326 262 VAARHQRYQQNQKTLVAGMRAL-GFEPLLDD---------------------EIQSPIITSFYSPEDPDYR--------- 310 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCeeccCc---------------------ccCCceEEEEECCCCCCCC---------
Confidence 4456677788888999998876 67776421 12344 4568874321 11
Q ss_pred HHHHHHHHHHhhcCCCcceEEEEeee-CcEEEEEecCCCCChhHHHHHHHHHHHHH
Q psy2480 267 KLNSWLGQILQRDVPSVSLNLTETAA-FGTVLRICPFECSSGGDYESFLVCLDAQV 321 (337)
Q Consensus 267 ~LNswLgqiL~~~~~~~~~~v~et~~-~G~~LRfcplnp~T~edI~~~v~~L~~~~ 321 (337)
..-+.+.|.+. ++.+..... .+.++|+|+....+.+|++.+++.|++.+
T Consensus 311 --~~~v~~~L~~~----gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 311 --FADFYQRLKEQ----GFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAM 360 (363)
T ss_pred --HHHHHHHHHHC----CEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 11233444322 355654432 34689999877669999999999998753
No 58
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=86.53 E-value=6.6 Score=38.49 Aligned_cols=95 Identities=8% Similarity=0.024 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccc-eeEEEEecCCCCCCCCCcchhh
Q psy2480 188 GIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQ-SCVVFQFVPKDAGWGPVPAYYD 266 (337)
Q Consensus 188 ~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~l-svVvFRy~P~~~~~e~~~~y~D 266 (337)
++-.+.++..++++.+.+.+++.|++......+ +... .+|.|.+...
T Consensus 256 g~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~--------------------~~rs~~vvsf~~~~~------------ 303 (355)
T cd00611 256 GVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDK--------------------RARSRMNVPFRLGKE------------ 303 (355)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCccccccCCCH--------------------HHcCceEEEEEcCCh------------
Confidence 466778888999999999999998852111000 1234 4588886421
Q ss_pred HHHHHHHHHHhhcCCCcceEEEEee--eCcEEEEEecCCCCChhHHHHHHHHHHHH
Q psy2480 267 KLNSWLGQILQRDVPSVSLNLTETA--AFGTVLRICPFECSSGGDYESFLVCLDAQ 320 (337)
Q Consensus 267 ~LNswLgqiL~~~~~~~~~~v~et~--~~G~~LRfcplnp~T~edI~~~v~~L~~~ 320 (337)
.++.-..+++.|.+- . +... ..| .+|+|+..--|.+||+.+++.|++.
T Consensus 304 ~l~~~~~~~~~r~G~---~--~~~~~~~~g-~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 304 ELEKEFLKEAEAAGM---I--GLKGHRSVG-GIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred hhhHHHHHHHHHCCC---c--ccCCCcccC-eEEEEccCCCCHHHHHHHHHHHHHH
Confidence 111111123333222 1 1111 123 7999998888999999999999874
No 59
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=86.42 E-value=7.1 Score=37.03 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccce-eEEEEecCCCCCCCCCcchhhH
Q psy2480 189 IQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQS-CVVFQFVPKDAGWGPVPAYYDK 267 (337)
Q Consensus 189 i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~ls-vVvFRy~P~~~~~e~~~~y~D~ 267 (337)
+-+++++.-+.++.+.+.+++. +++++.+. +...+ ++.|++ |.+.+. ..++
T Consensus 257 ~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~---------------------~~~~~~~~~~~~-~~~~~~-----~~~~ 308 (355)
T TIGR03301 257 VPARIARYRRNRELLVDGLRAL-GFQPLLPE---------------------RWQSPIIVSFLY-PDDPDF-----DFDD 308 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCeeecCC---------------------CCCCCcEEEEEC-CCCCcc-----hHHH
Confidence 4556666677888888888876 67766421 11233 345665 322110 0122
Q ss_pred HHHHHHHHHhhcCCCcceEEEEeee-CcEEEEEecCCCCChhHHHHHHHHHHHH
Q psy2480 268 LNSWLGQILQRDVPSVSLNLTETAA-FGTVLRICPFECSSGGDYESFLVCLDAQ 320 (337)
Q Consensus 268 LNswLgqiL~~~~~~~~~~v~et~~-~G~~LRfcplnp~T~edI~~~v~~L~~~ 320 (337)
+.+.+.+. ++.+..... ...+||+++....+.+|++.+++.|++.
T Consensus 309 ----~~~~l~~~----gi~i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 309 ----FYQELKER----GFVIYPGKLTLADTFRIGTIGEIDAADIERLLEAIKDA 354 (355)
T ss_pred ----HHHHHHHC----CEEEECCccccccEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 33344333 344544332 2258999998888999999999999863
No 60
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=85.77 E-value=16 Score=35.30 Aligned_cols=101 Identities=10% Similarity=0.038 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccc-eeEEEEecCCCCCCCCCcchhhH
Q psy2480 189 IQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQ-SCVVFQFVPKDAGWGPVPAYYDK 267 (337)
Q Consensus 189 i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~l-svVvFRy~P~~~~~e~~~~y~D~ 267 (337)
+-+++++..++++.+.+.+++. +++++.+ + +... .+++|.+. ...+.+
T Consensus 263 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~--------------------~~~~~~~~~~~~~-~~~~~~-------- 311 (368)
T PRK13479 263 VPARGARYANNQRTLVAGMRAL-GFEPLLD-A--------------------EIQSPIIVTFHAP-ADPAYD-------- 311 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCcccCC-c--------------------hhcCceEEEEECC-CCCCcC--------
Confidence 5566778888999999999887 6776641 0 0122 34667653 221100
Q ss_pred HHHHHHHHHhhcCCCcceEEEEeee-CcEEEEEecCCCCChhHHHHHHHHHHHHHhhhh
Q psy2480 268 LNSWLGQILQRDVPSVSLNLTETAA-FGTVLRICPFECSSGGDYESFLVCLDAQVYSGS 325 (337)
Q Consensus 268 LNswLgqiL~~~~~~~~~~v~et~~-~G~~LRfcplnp~T~edI~~~v~~L~~~~~il~ 325 (337)
..-+.+.|.+. ++.+..... ...++|++.....|.+|++.+++.|++.++.+.
T Consensus 312 -~~~l~~~L~~~----gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~~ 365 (368)
T PRK13479 312 -FKEFYERLKEQ----GFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALYWMG 365 (368)
T ss_pred -HHHHHHHHHHC----CEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 11222333332 344543222 134899998776789999999999999887664
No 61
>PRK05367 glycine dehydrogenase; Provisional
Probab=85.48 E-value=4.5 Score=45.74 Aligned_cols=94 Identities=14% Similarity=0.103 Sum_probs=65.9
Q ss_pred HHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCC
Q psy2480 181 LKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGP 260 (337)
Q Consensus 181 Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~ 260 (337)
+.++|.+|+.++=++...++.++.+.|+. ++++++. +.....|+|++ +. +
T Consensus 344 ~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~-~G~~~~~-----------------------~~~f~~~~~~~-~~--~--- 393 (954)
T PRK05367 344 AVYHGPEGLKAIARRVHRLAAILAAGLRA-LGLEVVH-----------------------DSFFDTLTVEV-GG--D--- 393 (954)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHh-cCcccCC-----------------------CCCCCeEEEeC-CC--C---
Confidence 34578999999999999999999999976 7888775 34457788885 21 1
Q ss_pred CcchhhHHHHHHHHHHhhcCCCcceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHH
Q psy2480 261 VPAYYDKLNSWLGQILQRDVPSVSLNLTETAAFGTVLRICPFECSSGGDYESFLVCLD 318 (337)
Q Consensus 261 ~~~y~D~LNswLgqiL~~~~~~~~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~ 318 (337)
..++.++|. +.+ +.+ ....+-+||+||-+..|.+||+.+++.+.
T Consensus 394 ----~~~i~~~l~----~~g----i~~--~~~~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 394 ----AAAVLARAL----AAG----INL--RRVDDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred ----HHHHHHHHH----HCC----cee--ccccCCEEEEEecccCCHHHHHHHHHHHc
Confidence 133443332 221 112 11123469999999999999999999997
No 62
>PRK12566 glycine dehydrogenase; Provisional
Probab=84.12 E-value=16 Score=41.44 Aligned_cols=118 Identities=11% Similarity=0.058 Sum_probs=68.9
Q ss_pred chhhHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCC
Q psy2480 175 LPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPK 254 (337)
Q Consensus 175 L~lW~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~ 254 (337)
+.-|.=++.||.+ +.+.=+.++.++.++.+.|++..++.+ . ++.+... ....+..+++ |.
T Consensus 760 ~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~~~~v~~-~--~~~~~~~---------------hEfii~~~~l-~~ 819 (954)
T PRK12566 760 PISWMYIAMMGPQ-LADASEVAILSANYLANQLGGAFPVLY-R--GRNERVA---------------HECILDLRPL-KA 819 (954)
T ss_pred HHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHhhCCCCc-C--CCCCCee---------------eEEEEEcccc-cc
Confidence 3445556778999 888888889999999999977443333 1 1000000 1112222222 22
Q ss_pred CCCCCCCcchhhHHHHHHHHHHhhcCCCcceEEEEeee-CcEEEEEecCCCCChhHHHHHHHHHHHHHhhhh
Q psy2480 255 DAGWGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETAA-FGTVLRICPFECSSGGDYESFLVCLDAQVYSGS 325 (337)
Q Consensus 255 ~~~~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~~-~G~~LRfcplnp~T~edI~~~v~~L~~~~~il~ 325 (337)
... . + .+.+. +.|. +.. +....... .+-+||+||-+..+.+||+.|++.|++..+++.
T Consensus 820 ~~g--~--~-~~dva----kRL~-d~G---ihapt~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e~~ 878 (954)
T PRK12566 820 QTG--I--S-EEDVA----KRLM-DYG---FHAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAEIG 878 (954)
T ss_pred ccC--C--C-HHHHH----HHHH-HCC---cEEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 111 1 1 13344 3444 322 22222222 345899999999999999999999988877743
No 63
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=83.35 E-value=9.7 Score=37.71 Aligned_cols=96 Identities=9% Similarity=-0.001 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccc-eeEEEEecCCCCCCCCCcchhh
Q psy2480 188 GIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQ-SCVVFQFVPKDAGWGPVPAYYD 266 (337)
Q Consensus 188 ~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~l-svVvFRy~P~~~~~e~~~~y~D 266 (337)
++-.+.++.-.+++.+.+.+++.+-+..+.. + +..+ ++++|++. .+.
T Consensus 259 G~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~-~--------------------~~rs~~v~sf~~~-~~~---------- 306 (360)
T PRK05355 259 GVAAMEKRNQEKAALLYDAIDSSDFYRNPVA-P--------------------EDRSRMNVPFTLA-DEE---------- 306 (360)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-h--------------------hhcCCcEEEEEcC-ChH----------
Confidence 5667788889999999999999883333221 0 1233 57889863 220
Q ss_pred HHHHHHHHHHhhcCCCcceEEEEeeeC-cEEEEEecCCCCChhHHHHHHHHHHHHH
Q psy2480 267 KLNSWLGQILQRDVPSVSLNLTETAAF-GTVLRICPFECSSGGDYESFLVCLDAQV 321 (337)
Q Consensus 267 ~LNswLgqiL~~~~~~~~~~v~et~~~-G~~LRfcplnp~T~edI~~~v~~L~~~~ 321 (337)
+..-+.+++.+.+- .+ ....+ .-++|+|+.+-.|.+||+.+++.|++..
T Consensus 307 -~~~~~~~~~~~~Gi----~~-~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~ 356 (360)
T PRK05355 307 -LDKKFLAEAKAAGL----VG-LKGHRSVGGMRASIYNAMPLEGVQALVDFMKEFE 356 (360)
T ss_pred -HHHHHHHHHHHCCC----cc-cCCCCccCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 01112123333322 22 11111 2379999988889999999999999844
No 64
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=82.46 E-value=29 Score=33.68 Aligned_cols=102 Identities=7% Similarity=-0.012 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhH
Q psy2480 188 GIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDK 267 (337)
Q Consensus 188 ~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~ 267 (337)
...+++.+..+.++++.+.|++.|+++++... +...+++.|+.. ...... ....
T Consensus 258 ~~~~~~~~~~~~~~~l~~~L~~l~g~~v~~~~---------------------~~~~n~~~~~~~--~~~~~~---~~~~ 311 (361)
T cd06452 258 ERVKRWDEEVEKARWFVAELEKIEGIKQLGEK---------------------PKNHDLMFFETP--SFDEIA---KKHK 311 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEECCC---------------------CCCCceEEEEcC--Ccchhh---hhcc
Confidence 33566777777889999999999999988521 234556666652 211000 0000
Q ss_pred HH-HHHHHHHhhcCCCcceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHH
Q psy2480 268 LN-SWLGQILQRDVPSVSLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQV 321 (337)
Q Consensus 268 LN-swLgqiL~~~~~~~~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~ 321 (337)
.+ ..+.+.|.+.+ +.+ .....+.++|++..- .|.+|++.+++.|++..
T Consensus 312 ~~~~~~~~~L~~~g----I~~-~~~~~~~~~ri~~~g-~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 312 RRGYFLYSELKKRG----IHG-IKPGLTRYFKLSTYG-LTWEQVEYVVDAFKEIA 360 (361)
T ss_pred ccchhHHHHHHHcC----ceE-EcCCCceEEEEEecC-CCHHHHHHHHHHHHHHh
Confidence 01 01334443321 222 222334589998833 58999999999998643
No 65
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=82.10 E-value=10 Score=39.27 Aligned_cols=79 Identities=19% Similarity=0.163 Sum_probs=55.0
Q ss_pred CCCcccccchhccccccccccc-CCCCc---------cccccccCcchhhHHHHhhChhhHHHHHHHHHHHHHHHHHHHh
Q psy2480 139 PVPAYYDKLNSWLGFTNIGDDL-STPLS---------MQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLS 208 (337)
Q Consensus 139 ~~~~~~d~ln~WLG~~~~p~V~-~~~ld---------~q~srr~~AL~lW~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~ 208 (337)
+.+.+..++..|+..|.-..+. .+.-+ +.......++..|++++.+|.+++.+++++-.++++.+.+.|+
T Consensus 263 rad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~y~g~~~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~ 342 (444)
T TIGR03531 263 RVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKSYPGRASASPSLDVLITLLSLGSKGYLELLKERKEMYKYLKELLQ 342 (444)
T ss_pred CCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHhccCCCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666777777765332222 22111 1111223578899999999999999999999999999999988
Q ss_pred hCC---CeEEee
Q psy2480 209 EYP---CLRILS 217 (337)
Q Consensus 209 ~~p---~LeiL~ 217 (337)
+.. +.+++.
T Consensus 343 ~l~~~~~~~~~~ 354 (444)
T TIGR03531 343 KLAERHGERLLD 354 (444)
T ss_pred HHHHhhCcEeec
Confidence 765 567775
No 66
>PLN02452 phosphoserine transaminase
Probab=82.02 E-value=9.9 Score=38.09 Aligned_cols=99 Identities=10% Similarity=0.075 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhH
Q psy2480 188 GIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDK 267 (337)
Q Consensus 188 ~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~ 267 (337)
++-.+.++.-++++.+.+.+++.+++ +.... +.+ .-...+|.|++...+
T Consensus 263 Gl~~~~~r~~~~a~~l~~~l~~~~G~-y~~~~---------------~~~---~rs~~~vsF~~~~~~------------ 311 (365)
T PLN02452 263 GLKAMEKRNIRKADLLYDAIDESNGF-YVCPV---------------EKS---VRSLMNVPFTLGGSE------------ 311 (365)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCc-ccCCC---------------ChH---HhCCeEEEEEcCCch------------
Confidence 56678888899999999999998887 22200 000 123458889873211
Q ss_pred HHHHHHHHHhhcCCCcceEEEEeee-CcEEEEEecCCCCChhHHHHHHHHHHHHHh
Q psy2480 268 LNSWLGQILQRDVPSVSLNLTETAA-FGTVLRICPFECSSGGDYESFLVCLDAQVY 322 (337)
Q Consensus 268 LNswLgqiL~~~~~~~~~~v~et~~-~G~~LRfcplnp~T~edI~~~v~~L~~~~~ 322 (337)
+...+.+.+.+.+= +.+-.+.. +| +|++..|-.+.++|+.+++++++...
T Consensus 312 ~~~~f~~~~~~~g~---~~~~G~r~~gg--~R~s~yna~~~~~v~~L~~~m~~f~~ 362 (365)
T PLN02452 312 LEAEFVKEAAKAGM---VQLKGHRSVGG--MRASIYNAMPLAGVEKLVAFMKDFQA 362 (365)
T ss_pred hHHHHHHHHHHCCC---cccCCccccCc--eEEECcCCCCHHHHHHHHHHHHHHHH
Confidence 12222233333322 33444543 56 99999999999999999999988654
No 67
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=80.38 E-value=3.7 Score=39.49 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=39.5
Q ss_pred hhchhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEe
Q psy2480 34 AIALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRIL 78 (337)
Q Consensus 34 l~aLplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~il 78 (337)
..++.+|.+++.++.+++.+++++..++++.+.+.|+++ ++++.
T Consensus 264 ~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 307 (371)
T PRK13520 264 AGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER-GFEPV 307 (371)
T ss_pred hHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC-CCEEe
Confidence 347789999999999999999999999999999999998 78754
No 68
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=79.33 E-value=24 Score=35.93 Aligned_cols=45 Identities=16% Similarity=0.057 Sum_probs=35.4
Q ss_pred ceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhhhhccc
Q psy2480 284 SLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYSGSQGL 328 (337)
Q Consensus 284 ~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~il~~t~ 328 (337)
++.+.....+|-+|||+|--..|.+||+++++.+++.+..+.+++
T Consensus 396 Gvl~~~~~~~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~~~~ 440 (442)
T TIGR00709 396 GLLLETGGREGEVFRLLCPITIDQEECEEGISRFKQAVEEALAEV 440 (442)
T ss_pred CeEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 355544444678999998888899999999999999988775554
No 69
>PLN02822 serine palmitoyltransferase
Probab=78.31 E-value=35 Score=35.35 Aligned_cols=104 Identities=13% Similarity=0.074 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhHHHH
Q psy2480 191 DILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDKLNS 270 (337)
Q Consensus 191 ~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~LNs 270 (337)
++.++--+.++.|.+.+++.+++++.. +...|++-+++....... ... +++-.
T Consensus 368 ~~~~~l~~~~~~l~~~L~~~~g~~~~~-----------------------~~~spi~~l~l~~~~~~~---~~~-~~~~~ 420 (481)
T PLN02822 368 SVLAKLKENIALLHKGLSDIPGLSIGS-----------------------NTLSPIVFLHLEKSTGSA---KED-LSLLE 420 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCC-----------------------CCCCCEEEEEeCCCcccc---cch-HHHHH
Confidence 455566677888999998887777764 345677777774221110 000 11112
Q ss_pred HHHHHHhhcCCCcceEEEEeee--C-----cEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 271 WLGQILQRDVPSVSLNLTETAA--F-----GTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 271 wLgqiL~~~~~~~~~~v~et~~--~-----G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
.+.+.|..+ -++.+..... . ...+|+|.-...|.+||+++++.|++.+..+
T Consensus 421 ~~~~~Ll~e---~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~ 478 (481)
T PLN02822 421 HIADRMLKE---DSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAASV 478 (481)
T ss_pred HHHHHHHhc---CCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 233444322 2366665422 1 1369999766669999999999999876654
No 70
>KOG1383|consensus
Probab=78.11 E-value=2.6 Score=43.92 Aligned_cols=43 Identities=16% Similarity=0.372 Sum_probs=40.9
Q ss_pred hHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEeecC
Q psy2480 39 VWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILSHG 81 (337)
Q Consensus 39 lW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~ils~~ 81 (337)
-|.+|-+||++|-.+.-++.++.++.|.|++.++.+|+|.|.+
T Consensus 340 ~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp 382 (491)
T KOG1383|consen 340 QWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKP 382 (491)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCC
Confidence 5999999999999999999999999999999999999999663
No 71
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=76.71 E-value=31 Score=39.21 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=73.3
Q ss_pred ccccccCcchhhHH------------HHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeecccc
Q psy2480 167 QTNEKAIALPVWTT------------LKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYL 234 (337)
Q Consensus 167 q~srr~~AL~lW~~------------Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~ 234 (337)
|.-||..|-.-.|+ +.++|.+|+.++=++...++..+.+.|++ .+++++.
T Consensus 306 qhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~-~G~~~~~----------------- 367 (939)
T TIGR00461 306 QHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEN-DPHELIN----------------- 367 (939)
T ss_pred ccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-CCCcccC-----------------
Confidence 45566666532222 34479999999999999999999999988 8899886
Q ss_pred CccccccccceeEEEEecCCCCCCCCCcchhhHHHHHHHHHHhhcCCCcceEEEEeeeCcEEEEEecCCCCChhHHHHHH
Q psy2480 235 PVQTILESVQSCVVFQFVPKDAGWGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETAAFGTVLRICPFECSSGGDYESFL 314 (337)
Q Consensus 235 ~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~~~G~~LRfcplnp~T~edI~~~v 314 (337)
+.-...+++++ +. .+ .+++. +.+.+.+ +.+.. ..+-.+++|.-+..|.+||+.++
T Consensus 368 ------~~fF~~~~v~~-~~-~~-------~~~i~----~~~~~~g----i~l~~--~~~~~i~~s~~E~~t~~di~~l~ 422 (939)
T TIGR00461 368 ------KTWFDTLTVKV-GN-GI-------SSELL----KAAEEFN----INLRA--VDTTTVGIALDETTTKADVENLL 422 (939)
T ss_pred ------CCccceEEEEe-CC-CC-------HHHHH----HHHHHCC----Ceeee--cCCCEEEEEeecCCCHHHHHHHH
Confidence 23355677776 21 11 12333 3333322 22222 22247999999999999999999
Q ss_pred HHHH
Q psy2480 315 VCLD 318 (337)
Q Consensus 315 ~~L~ 318 (337)
+.+.
T Consensus 423 ~~~~ 426 (939)
T TIGR00461 423 KVFD 426 (939)
T ss_pred HHhc
Confidence 9995
No 72
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=74.89 E-value=44 Score=34.30 Aligned_cols=127 Identities=9% Similarity=0.020 Sum_probs=78.2
Q ss_pred cccccCcchhhHHH--Hh---hChhhHHHHHHHHHHHHHHHHHHHhhC-CCeEEeecCCCCCCcceeeeccccCcccccc
Q psy2480 168 TNEKAIALPVWTTL--KS---MGQTGIQDILTFNFSLVESIRQKLSEY-PCLRILSHGPVSGLGLKEVTSQYLPVQTILE 241 (337)
Q Consensus 168 ~srr~~AL~lW~~L--q~---LG~d~i~~~I~~t~~La~~~~e~L~~~-p~LeiL~~~~waglg~v~~~~~~~~~~~~~~ 241 (337)
-.+|-++..+.-.. .. +..+.+-....+...++.+|.+.|.+. |+..+..+.. +
T Consensus 232 ~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~--------------------~ 291 (386)
T COG1104 232 RGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDE--------------------P 291 (386)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcc--------------------c
Confidence 45666776664321 11 233556677778889999999999976 8888886321 2
Q ss_pred ccceeEEEEecCCCCCCCCCcchhhHHHH----------------HHHHHHhhcCCCcceEEEEeeeCcEEEEEecCCCC
Q psy2480 242 SVQSCVVFQFVPKDAGWGPVPAYYDKLNS----------------WLGQILQRDVPSVSLNLTETAAFGTVLRICPFECS 305 (337)
Q Consensus 242 ~~lsvVvFRy~P~~~~~e~~~~y~D~LNs----------------wLgqiL~~~~~~~~~~v~et~~~G~~LRfcplnp~ 305 (337)
....+++|.|..-+-+ ...-.||. -..++|...+-. .+.-...||||.-...
T Consensus 292 rlP~~~~~~f~gv~gE-----~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~-------~e~a~~siR~S~g~~t 359 (386)
T COG1104 292 RLPNILNFSFPGVEGE-----SLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGIS-------EELAHGSIRFSLGRFT 359 (386)
T ss_pred CCCCeEEEEeCCCcHH-----HHHHhccccCeEEeccccccCCCCCccHHHHHcCCC-------hHHhCccEEEEcCCCC
Confidence 3456777777431110 00000000 012455444431 1233468999998888
Q ss_pred ChhHHHHHHHHHHHHHhhhhc
Q psy2480 306 SGGDYESFLVCLDAQVYSGSQ 326 (337)
Q Consensus 306 T~edI~~~v~~L~~~~~il~~ 326 (337)
|++||+.+++.+.+.++-+..
T Consensus 360 t~eei~~~~~~l~~~i~~lr~ 380 (386)
T COG1104 360 TEEEIDAAAEALKEIIKRLRE 380 (386)
T ss_pred CHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999998887653
No 73
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=74.80 E-value=24 Score=40.28 Aligned_cols=91 Identities=14% Similarity=0.152 Sum_probs=61.9
Q ss_pred hChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcc
Q psy2480 184 MGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPA 263 (337)
Q Consensus 184 LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~ 263 (337)
+|..|+.++=++..+++.++++.|++ .+++++. +.-...|+|++. + +
T Consensus 375 ~g~~Gl~~Ia~ri~~la~~l~~~L~~-~G~~~~~-----------------------~~~f~~vt~~~~--~-~------ 421 (993)
T PLN02414 375 HGPEGLKTIAQRVHGLAGVFAAGLKK-LGFQVQS-----------------------LPFFDTVKVKCS--D-A------ 421 (993)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhh-cCCccCC-----------------------CCCcCeEEEecC--C-H------
Confidence 46777777778889999999999976 5677765 233558888862 1 1
Q ss_pred hhhHHHHHHHHHHhhcCCCcceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHH
Q psy2480 264 YYDKLNSWLGQILQRDVPSVSLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDA 319 (337)
Q Consensus 264 y~D~LNswLgqiL~~~~~~~~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~ 319 (337)
.+++++|.+ +. +.+... .+-.+|+|+-+..|.+||+.+++.+..
T Consensus 422 --~~v~~~L~~---~g-----I~l~~~--~~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 422 --DAIADAAAK---VG-----INLRVV--DANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred --HHHHHHHHH---CC-----CeeEEe--cCCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 334443322 11 222221 133699999999999999999999974
No 74
>PRK07179 hypothetical protein; Provisional
Probab=74.58 E-value=14 Score=36.64 Aligned_cols=30 Identities=10% Similarity=0.071 Sum_probs=26.3
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHhh
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVYS 323 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~i 323 (337)
.-+|||++-...|.+||+++++.|++..+.
T Consensus 369 ~~~lRis~~~~~t~edi~~~~~~l~~~~~~ 398 (407)
T PRK07179 369 RNLIRLSLNADLTASDLDRVLEVCREARDE 398 (407)
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 369999998888999999999999987664
No 75
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=73.85 E-value=33 Score=34.90 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhh
Q psy2480 187 TGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYD 266 (337)
Q Consensus 187 d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D 266 (337)
-|+-.+..++-+-++.+++.+++.+-.+-...+ + .-..-.|+|++.. +
T Consensus 263 GGl~~~~~rn~~ka~~LY~~id~s~fy~~~v~~-----------------~---~RS~mnV~f~~~~------------~ 310 (365)
T COG1932 263 GGLEALEARNQAKAQLLYDWIDKSDFYRNLVAK-----------------A---NRSRMNVTFTLVD------------A 310 (365)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCccccccch-----------------h---hccceeEEEEcCc------------H
Confidence 367788899999999999999988655544311 1 2345578999862 2
Q ss_pred HHHHHHHHHHhhcCCCcceEEEEeee-CcEEEEEecCCCCChhHHHHHHHHHHHHHh
Q psy2480 267 KLNSWLGQILQRDVPSVSLNLTETAA-FGTVLRICPFECSSGGDYESFLVCLDAQVY 322 (337)
Q Consensus 267 ~LNswLgqiL~~~~~~~~~~v~et~~-~G~~LRfcplnp~T~edI~~~v~~L~~~~~ 322 (337)
+|+..+.+.+.+.+- +.+.+++. +| +|.+..|....+|++.++++++..-+
T Consensus 311 ~ld~~fv~eae~~gl---~~lkGhr~vgG--mRasiynA~~~e~veaL~~fm~~f~~ 362 (365)
T COG1932 311 ELDKGFVAEAEAAGL---IYLKGHRSVGG--LRASIYNAVPLEDVEALTDFMDWFEE 362 (365)
T ss_pred HHHHHHHHHHHHcCC---ceeccccCCCc--eeeeeecCCCHHHHHHHHHHHHHHHH
Confidence 345444444444333 55666775 66 99999999999999999999987543
No 76
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=73.47 E-value=46 Score=33.52 Aligned_cols=38 Identities=24% Similarity=0.179 Sum_probs=28.7
Q ss_pred ceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHH
Q psy2480 284 SLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQV 321 (337)
Q Consensus 284 ~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~ 321 (337)
++.+......|-+|||+|-...+.++|++.++.|++.+
T Consensus 381 Gv~i~p~~~f~~~lRl~p~l~~~~~~l~~~~~~l~~~l 418 (420)
T TIGR00700 381 GLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDILCAIL 418 (420)
T ss_pred CeEEeccCCCCCEEEEECCCCcCHHHHHHHHHHHHHHh
Confidence 45565544446799999755568999999999998765
No 77
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=73.14 E-value=13 Score=38.58 Aligned_cols=95 Identities=20% Similarity=0.279 Sum_probs=52.2
Q ss_pred HHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCC
Q psy2480 181 LKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGP 260 (337)
Q Consensus 181 Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~ 260 (337)
+..+|.+|+.++=+.+++.+.++.+.|++..++.+-. ...-=.+..+.+.
T Consensus 335 l~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~------------------------~~f~e~v~~~~~~------ 384 (429)
T PF02347_consen 335 LAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPFDN------------------------PFFFEFVVVFSKD------ 384 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSSS------------------------SSBSSEEEEESS-------
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC------------------------CCceeeeeecCCc------
Confidence 4448999999999999999999999999884443322 1111111122111
Q ss_pred CcchhhHHHHHHHHHHhhcCCCcceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHH
Q psy2480 261 VPAYYDKLNSWLGQILQRDVPSVSLNLTETAAFGTVLRICPFECSSGGDYESFLVCL 317 (337)
Q Consensus 261 ~~~y~D~LNswLgqiL~~~~~~~~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L 317 (337)
...+ +++++....+ +..- ....+ ++-+|+-+..|.+||+.+++.+
T Consensus 385 -----~~~~----~l~~~~~~~g-l~~~-~~~~~-~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 385 -----KEVE----ELLKRGIEGG-LNLR-YPDDG-ALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp -----HHHH----HHHHTT-----EEEG-GG-SS-EEEEE--TT--HHHHHHHHH--
T ss_pred -----HHHH----HHHHHHHhcC-CCcc-ccCCC-eEEEEccCCCCHHHHHHHHhcC
Confidence 1122 3333443332 2221 11244 8899999999999999999864
No 78
>PRK06108 aspartate aminotransferase; Provisional
Probab=73.04 E-value=47 Score=32.16 Aligned_cols=93 Identities=13% Similarity=0.113 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhHH
Q psy2480 189 IQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDKL 268 (337)
Q Consensus 189 i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~L 268 (337)
+.++.++.-+.++.+.+.|++.+++++.. +..-..+.+++.+...+ +
T Consensus 284 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-----------------------p~~g~~~~~~l~~~~~~--------~-- 330 (382)
T PRK06108 284 VAELVARLRRSRDHLVDALRALPGVEVAK-----------------------PDGAMYAFFRIPGVTDS--------L-- 330 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccC-----------------------CCeeEEEEEeCCCCCCH--------H--
Confidence 44556666677788888888888877664 11122334455221111 1
Q ss_pred HHHHHHHHhhcCCCcceEEEEeee----CcEEEEEecCCCCChhHHHHHHHHHHHHH
Q psy2480 269 NSWLGQILQRDVPSVSLNLTETAA----FGTVLRICPFECSSGGDYESFLVCLDAQV 321 (337)
Q Consensus 269 NswLgqiL~~~~~~~~~~v~et~~----~G~~LRfcplnp~T~edI~~~v~~L~~~~ 321 (337)
.+.+.|.+.. ++.+..... +..++|+|+.. +.+++++.++.|.+.+
T Consensus 331 --~~~~~ll~~~---gV~v~pg~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l 380 (382)
T PRK06108 331 --ALAKRLVDEA---GLGLAPGTAFGPGGEGFLRWCFAR--DPARLDEAVERLRRFL 380 (382)
T ss_pred --HHHHHHHHhC---CEEEeCchhhCCCCCCEEEEEecC--CHHHHHHHHHHHHHHH
Confidence 1223332222 244543321 23599999987 7899999999888754
No 79
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=73.04 E-value=34 Score=32.50 Aligned_cols=31 Identities=16% Similarity=0.394 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCeEEee
Q psy2480 187 TGIQDILTFNFSLVESIRQKLSEYPCLRILS 217 (337)
Q Consensus 187 d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~ 217 (337)
+.+-+++++.-++++.+.+.|.+.|+++++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~ 258 (352)
T cd00616 228 EKLDEIIARRREIAERYKELLADLPGIRLPD 258 (352)
T ss_pred HhhHHHHHHHHHHHHHHHHHhcCCCCccCCC
Confidence 3445667777889999999999999999886
No 80
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=72.25 E-value=21 Score=36.04 Aligned_cols=98 Identities=12% Similarity=0.104 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhH
Q psy2480 188 GIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDK 267 (337)
Q Consensus 188 ~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~ 267 (337)
|+-.+.+++-+.++.+++.+++.+++-.... +.+ .-..-.|+|+...+ .
T Consensus 262 Gl~~~~~r~~~ka~~ly~~id~~~~~~~~~~----------------~~~---~RS~mnv~f~~~~~------------~ 310 (364)
T PRK12462 262 GVHAMRDINARKAAMLYATLDALNEVIDCHA----------------HRA---ARSTMNVAFRFRQP------------R 310 (364)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCcccCCC----------------Chh---hcCcceEEEEcCCH------------H
Confidence 7888999999999999999999986665531 111 23455788886311 2
Q ss_pred HHHHHHHHHhhcCCCcceEEEEeee-CcEEEEEecCCCCChhHHHHHHHHHHHHH
Q psy2480 268 LNSWLGQILQRDVPSVSLNLTETAA-FGTVLRICPFECSSGGDYESFLVCLDAQV 321 (337)
Q Consensus 268 LNswLgqiL~~~~~~~~~~v~et~~-~G~~LRfcplnp~T~edI~~~v~~L~~~~ 321 (337)
|+....+...+.+= +.+-.+.. +| +|.|..|-.+.|+|+.+++.+++..
T Consensus 311 l~~~f~~~a~~~gl---~~lkGhr~vgg--~Ras~yna~~~e~v~~L~~fm~~f~ 360 (364)
T PRK12462 311 LDTLFKEQSTEAGF---CGLSGHRSIGG--IRASLYNAVSEQAVSRLCAFLKDFA 360 (364)
T ss_pred HHHHHHHHHHHCCC---ccccCCcccCc--eEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 33333333322222 34555544 55 9999999999999999999998754
No 81
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=71.87 E-value=11 Score=36.42 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=40.9
Q ss_pred HHhhchhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEe
Q psy2480 32 EKAIALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRIL 78 (337)
Q Consensus 32 ~kl~aLplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~il 78 (337)
.-...+.+|.++++++..++-++.++..++++.|.+.|++++.+.+.
T Consensus 267 ~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 313 (373)
T TIGR03812 267 SGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVI 313 (373)
T ss_pred hhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEc
Confidence 34668899999999999999999999999999999999998655444
No 82
>PRK02948 cysteine desulfurase; Provisional
Probab=71.68 E-value=53 Score=31.94 Aligned_cols=35 Identities=9% Similarity=0.060 Sum_probs=29.0
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHhhhhccc
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVYSGSQGL 328 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~il~~t~ 328 (337)
+-++|+|+-.-.|.+||+.+++.|++.++.+..+|
T Consensus 345 ~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~~~ 379 (381)
T PRK02948 345 KQFVRFSFGQQTTKDQIDTTIHALETIGNQFYRGV 379 (381)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 46999997655599999999999999888777665
No 83
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=71.43 E-value=25 Score=32.79 Aligned_cols=91 Identities=13% Similarity=0.096 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhh
Q psy2480 187 TGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYD 266 (337)
Q Consensus 187 d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D 266 (337)
+.+..+.++..+.++.+.+.+++.+...+.. +.....+.|++.+....
T Consensus 255 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-----------------------~~~g~~~~~~~~~~~~~--------- 302 (350)
T cd00609 255 EHLEELRERYRRRRDALLEALKELGPLVVVK-----------------------PSGGFFLWLDLPEGDDE--------- 302 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccC-----------------------CCccEEEEEecCCCChH---------
Confidence 4556666777888899999999887665421 22233445555322110
Q ss_pred HHHHHHHHHHhhcCCCcceEEEEeee----CcEEEEEecCCCCChhHHHHHHHHHH
Q psy2480 267 KLNSWLGQILQRDVPSVSLNLTETAA----FGTVLRICPFECSSGGDYESFLVCLD 318 (337)
Q Consensus 267 ~LNswLgqiL~~~~~~~~~~v~et~~----~G~~LRfcplnp~T~edI~~~v~~L~ 318 (337)
+ .+.+.+.+ . ++.+..... .+.++|+++-.+ .+||+.+++.|+
T Consensus 303 --~-~~~~~l~~-~---gi~i~~~~~~~~~~~~~iRi~~~~~--~~~i~~~~~al~ 349 (350)
T cd00609 303 --E-FLERLLLE-A---GVVVRPGSAFGEGGEGFVRLSFATP--EEELEEALERLA 349 (350)
T ss_pred --H-HHHHHHHh-C---CEEEecccccccCCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence 1 11223322 1 244443322 446999999998 999999999886
No 84
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=70.21 E-value=81 Score=32.04 Aligned_cols=43 Identities=21% Similarity=0.225 Sum_probs=33.4
Q ss_pred ceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhhhhc
Q psy2480 284 SLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYSGSQ 326 (337)
Q Consensus 284 ~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~il~~ 326 (337)
++.+..+..+|-+|||+|=-..|.++|+++++.|++.+..+++
T Consensus 382 Gvl~~~~g~~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~~ 424 (425)
T PRK07495 382 GLILLTCGVHGNVIRFLAPITIQDDVFAEALDILEASILEASA 424 (425)
T ss_pred CeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 3555444345678999987777999999999999999887664
No 85
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=69.56 E-value=46 Score=33.60 Aligned_cols=94 Identities=11% Similarity=0.118 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhHHHH
Q psy2480 191 DILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDKLNS 270 (337)
Q Consensus 191 ~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~LNs 270 (337)
++.++..+++++|++.|.+. +++++.. ....+++...+..++.. -.
T Consensus 286 ~~~~~l~~~a~~l~~~L~~~-G~~~~~~----------------------~~~t~i~~v~~~~~~~~-----------~~ 331 (416)
T PRK13034 286 TYAKQVIANAQALAEVLKER-GYDLVSG----------------------GTDNHLLLVDLRPKGLS-----------GK 331 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCEeccC----------------------CCCCcEEEEEcCCCCCC-----------HH
Confidence 34577788899999998877 8888751 13455566655433322 11
Q ss_pred HHHHHHhhcCCCcceEEEEee--------eCcEEEEEecCC--CC--ChhHHHHHHHHHHHHHh
Q psy2480 271 WLGQILQRDVPSVSLNLTETA--------AFGTVLRICPFE--CS--SGGDYESFLVCLDAQVY 322 (337)
Q Consensus 271 wLgqiL~~~~~~~~~~v~et~--------~~G~~LRfcpln--p~--T~edI~~~v~~L~~~~~ 322 (337)
.+.+.|.+. ++.+.... .....||+++-. .. +++||+++++.|++.+.
T Consensus 332 ~~~~~L~~~----GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~ 391 (416)
T PRK13034 332 DAEQALERA----GITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLD 391 (416)
T ss_pred HHHHHHHhC----CcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 122333332 24443311 123479999544 33 79999999999998765
No 86
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=69.14 E-value=65 Score=32.79 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=31.0
Q ss_pred ceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhh
Q psy2480 284 SLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYS 323 (337)
Q Consensus 284 ~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~i 323 (337)
++.+......|-+|||.|--..|.+||+++++.|++.+..
T Consensus 403 Gv~~~~~~~~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 403 GVIVLTCGTYGNVIRLLPPLVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred CeEEeccCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence 4666544334568999987778999999999999987754
No 87
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=69.03 E-value=58 Score=32.76 Aligned_cols=31 Identities=6% Similarity=0.039 Sum_probs=26.8
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
|.+|||||--..|++||+.+++.+++.+.+|
T Consensus 393 ~~~lR~~p~l~~t~edId~~v~~l~~al~~~ 423 (423)
T PRK05964 393 GNTIYLMPPYIITAEELDRITDAIVEVADEL 423 (423)
T ss_pred CCEEEEeCCcccCHHHHHHHHHHHHHHHhhC
Confidence 3589999987789999999999999988664
No 88
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=68.76 E-value=78 Score=31.22 Aligned_cols=94 Identities=12% Similarity=0.113 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhHHHHHHHHHH
Q psy2480 197 FSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDKLNSWLGQIL 276 (337)
Q Consensus 197 ~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~LNswLgqiL 276 (337)
.+.++.+.+.|++.|++++....+..+ . ......|.|.....+.+ -.-+.+.|
T Consensus 269 ~~~~~~l~~~L~~i~g~~~~~~~~~~~--~--------------~~~~~~v~~~~~~~g~~-----------~~~l~~~L 321 (363)
T TIGR01437 269 VAKLTPFIEALNTLKGVSASIVQDEAG--R--------------DIARAEIRFDESELGMT-----------AADVVQAL 321 (363)
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCCCC--C--------------cCceEEEEEeccCCCCC-----------HHHHHHHH
Confidence 344557899999999999986422111 0 01123355543222322 12344555
Q ss_pred hhcCCCcceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHH
Q psy2480 277 QRDVPSVSLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQ 320 (337)
Q Consensus 277 ~~~~~~~~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~ 320 (337)
.+..+. +..-......-.+|++|-. -+++|++.+++.|++.
T Consensus 322 ~~~~~~--I~~r~~~~~~~~~~l~~~~-~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 322 RQGEPA--IYTRGYKANEGIIEIDPRS-VTGGQLDIIVERIREI 362 (363)
T ss_pred hcCCCC--EEEeeeeecCCeEEEEeec-CCHHHHHHHHHHHHHh
Confidence 443332 4444333322234444332 3589999999998764
No 89
>PRK05764 aspartate aminotransferase; Provisional
Probab=68.38 E-value=95 Score=30.25 Aligned_cols=36 Identities=19% Similarity=0.113 Sum_probs=25.8
Q ss_pred eEEEEeeeC--cEEEEEecCCCCChhHHHHHHHHHHHHHh
Q psy2480 285 LNLTETAAF--GTVLRICPFECSSGGDYESFLVCLDAQVY 322 (337)
Q Consensus 285 ~~v~et~~~--G~~LRfcplnp~T~edI~~~v~~L~~~~~ 322 (337)
+.+...... +.++|+|... +.+++++.++.|.+.+.
T Consensus 353 i~v~~g~~f~~~~~vRis~~~--~~~~~~~~i~~l~~~~~ 390 (393)
T PRK05764 353 VAVVPGIAFGAPGYVRLSYAT--SLEDLEEGLERIERFLE 390 (393)
T ss_pred EEEccccccCCCCEEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 555544332 3699999765 58999999999987665
No 90
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=67.55 E-value=39 Score=33.31 Aligned_cols=30 Identities=17% Similarity=0.058 Sum_probs=26.4
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 295 TVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 295 ~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
.+||++|--.-|.+||+++++.|++.+..+
T Consensus 368 ~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 368 ERLRITPTPAHTDKMIDDLVEALLLVWDRL 397 (402)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 589999977779999999999999987754
No 91
>PRK14012 cysteine desulfurase; Provisional
Probab=67.19 E-value=46 Score=32.92 Aligned_cols=32 Identities=3% Similarity=-0.029 Sum_probs=27.6
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHhhhh
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVYSGS 325 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~il~ 325 (337)
..++|+++-...|.+||+.+++.|++.++.+.
T Consensus 350 ~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~ 381 (404)
T PRK14012 350 HSSIRFSLGRFTTEEEIDYAIELVRKSIGKLR 381 (404)
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 35899988888899999999999999887764
No 92
>KOG0628|consensus
Probab=67.18 E-value=7.7 Score=40.64 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=41.9
Q ss_pred HHHhhchhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEe
Q psy2480 31 NEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRIL 78 (337)
Q Consensus 31 ~~kl~aLplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~il 78 (337)
..|.|+|=+|+.++.+|.+++.++|++-.+|+|.+-+.+.+-+--++.
T Consensus 352 ~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~ 399 (511)
T KOG0628|consen 352 GRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIV 399 (511)
T ss_pred ccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceee
Confidence 468999999999999999999999999999999999976665555544
No 93
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=66.82 E-value=56 Score=32.98 Aligned_cols=106 Identities=14% Similarity=0.149 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCC-CC--CCcch
Q psy2480 188 GIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAG-WG--PVPAY 264 (337)
Q Consensus 188 ~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~-~e--~~~~y 264 (337)
++-.++.+.-++++.+++.+++.+.++++...+ . .....+++|++.+++-+ .+ ..-++
T Consensus 260 Gle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~-----------------~--~rS~tvt~v~~~~~~~~~~~~~~~~~~ 320 (374)
T TIGR01365 260 GLKPLIARADDNLAVLEAFVAKNNWIHFLAETP-----------------E--IRSNTSVCLKVVDPAIDALDEDAQADF 320 (374)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCh-----------------h--hcCCCeEEEEeCCccccccccchhhHH
Confidence 688999999999999999999998788876211 0 12344566777433211 01 00111
Q ss_pred hhHHHHHHHHHHhhcCCCcceEEEEee--eCcEEEEEecCCCCChhHHHHHHHHHHHH
Q psy2480 265 YDKLNSWLGQILQRDVPSVSLNLTETA--AFGTVLRICPFECSSGGDYESFLVCLDAQ 320 (337)
Q Consensus 265 ~D~LNswLgqiL~~~~~~~~~~v~et~--~~G~~LRfcplnp~T~edI~~~v~~L~~~ 320 (337)
.+++.++|. +. ++.|.... ..|..+|+.-+-..+.+||+.++++|+=.
T Consensus 321 ~~~~~~~l~----~~----gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~ 370 (374)
T TIGR01365 321 AKELISTLE----KE----GVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWA 370 (374)
T ss_pred HHHHHHHHH----HC----CEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHHH
Confidence 255554332 22 35555333 24689999998888999999999999843
No 94
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=66.56 E-value=75 Score=32.73 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=32.9
Q ss_pred ceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhhhhc
Q psy2480 284 SLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYSGSQ 326 (337)
Q Consensus 284 ~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~il~~ 326 (337)
++.+.....++-++||+|--..|++||+++++.+++.+..+.+
T Consensus 415 Gvl~~~~~~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~~ 457 (459)
T PRK06931 415 GLLLERGGRNGNVVRLLPPLLITQAECEEFIDRFEQALLAAVK 457 (459)
T ss_pred CcEEeecCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHHHHh
Confidence 3555443335678999998888999999999999998876544
No 95
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=65.74 E-value=56 Score=30.88 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=22.8
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHH
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQ 320 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~ 320 (337)
+-++|+++-...+.+||+++++.|++.
T Consensus 322 ~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 322 TARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred CCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 469999996556899999999999864
No 96
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=65.54 E-value=86 Score=31.97 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=32.4
Q ss_pred ceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhhhhc
Q psy2480 284 SLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYSGSQ 326 (337)
Q Consensus 284 ~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~il~~ 326 (337)
++.+......|-++||+|-...|.++|++.++.|++.+..+..
T Consensus 404 Gvlv~~~~~~~~~lrl~p~l~~t~~~id~~l~~l~~~l~~~~~ 446 (451)
T PRK06918 404 GLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEESLQACYE 446 (451)
T ss_pred CeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 4556554444568999986656899999999999998876643
No 97
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=65.16 E-value=94 Score=32.11 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=30.9
Q ss_pred ceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 284 SLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 284 ~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
++.+..+...|-+|||+|--..|++||+++++.+++.+..+
T Consensus 421 Gll~~~~g~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~ 461 (464)
T PRK06938 421 GLILELGGRHGSVVRFLPPLIITAEQIDEVAEIFAEAVAAA 461 (464)
T ss_pred CeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 35554433346799999777779999999999999887653
No 98
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=64.62 E-value=95 Score=31.39 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=29.4
Q ss_pred ceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHH
Q psy2480 284 SLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQV 321 (337)
Q Consensus 284 ~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~ 321 (337)
++.+......|-++||+|=-..|.++|++.++.|++.+
T Consensus 382 Gv~i~~~~~~g~~lr~~ppl~i~~~~i~~~~~~l~~~l 419 (421)
T PRK06777 382 GLLLLSCGVHGNVIRFLYPLTIPDAQFSKALNILTRLL 419 (421)
T ss_pred CeEEeecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 46666655556799999855569999999999998764
No 99
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=64.47 E-value=1.3e+02 Score=29.61 Aligned_cols=102 Identities=7% Similarity=0.002 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCC--CCCcchhhH
Q psy2480 190 QDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGW--GPVPAYYDK 267 (337)
Q Consensus 190 ~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~--e~~~~y~D~ 267 (337)
.++++...+.++++.+.|++.+++++.... +...+++.|.. | .... ......
T Consensus 279 ~~~~~~~~~~~~~l~~~L~~l~g~~~~~~~---------------------~~~~~i~~~~~-~-~~~~~~~~~~~~--- 332 (387)
T PRK09331 279 VKRWDEEVKKARWFVDELEKIEGFKQLGEK---------------------PRNHDLMKFET-P-SFDEIAKKHKRR--- 332 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeccC---------------------cCcCCeEEEeC-C-chhHHhhhcccc---
Confidence 355667788999999999999999998521 12234444543 2 2110 000000
Q ss_pred HHHHHHHHHhhcCCCcceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 268 LNSWLGQILQRDVPSVSLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 268 LNswLgqiL~~~~~~~~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
-..+.+.|.+- ++. ......+.++|+...- .|.+|++.+++.|++....+
T Consensus 333 -~~~~~~~L~~~----gI~-~~~~~~~~i~ri~~~g-~t~~di~~l~~aL~~i~~~~ 382 (387)
T PRK09331 333 -GFFLYEELKKR----GIH-GIKPGATKEFKLSTYG-LTWEQVEYVADAFKEIAEKY 382 (387)
T ss_pred -chhHHHHHHHc----Cce-EEccCCceEEEEEecc-CCHHHHHHHHHHHHHHHHhc
Confidence 01233444322 232 1122345788888744 58999999999999876543
No 100
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=63.48 E-value=86 Score=31.58 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=30.3
Q ss_pred ceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHh
Q psy2480 284 SLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVY 322 (337)
Q Consensus 284 ~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~ 322 (337)
++.+.....++-+|||+|--..|.+|++++++.|++.++
T Consensus 373 Gv~v~~~~~~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~ 411 (412)
T TIGR02407 373 GLIIETSGPNDEVIKLLPPLTIDEETLQQGLDILEQAVE 411 (412)
T ss_pred CCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 355544433456899999888899999999999998764
No 101
>PLN02724 Molybdenum cofactor sulfurase
Probab=63.31 E-value=41 Score=37.18 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=24.4
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHHH
Q psy2480 295 TVLRICPFECSSGGDYESFLVCLDAQV 321 (337)
Q Consensus 295 ~~LRfcplnp~T~edI~~~v~~L~~~~ 321 (337)
-++|+++-.-.|.+||+.+++.|+++-
T Consensus 460 G~vRvS~g~ynt~eDvd~lv~~l~~~~ 486 (805)
T PLN02724 460 GAVRVSFGYMSTFEDCQKFIDFIISSF 486 (805)
T ss_pred ceEEEEcCccCCHHHHHHHHHHHHHHh
Confidence 489999988889999999999999964
No 102
>PRK09064 5-aminolevulinate synthase; Validated
Probab=63.13 E-value=68 Score=31.63 Aligned_cols=30 Identities=17% Similarity=0.071 Sum_probs=25.4
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 295 TVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 295 ~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
.+||+||--..|.+||+++++.|++.+..+
T Consensus 369 ~~lRis~~~~~t~edi~~l~~~l~~~~~~~ 398 (407)
T PRK09064 369 ERLRITPTPFHTDEMIDHLVEALVEVWARL 398 (407)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 589999876679999999999999876543
No 103
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=61.78 E-value=1.1e+02 Score=29.89 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=29.1
Q ss_pred eEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 285 LNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 285 ~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
+.+.. .++.+|||+|--..+.+||+++++.|++.+..+
T Consensus 359 v~v~~--~~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~~ 396 (400)
T PTZ00125 359 LLAKP--THDNIIRFAPPLVITKEQLDQALEIIKKVLKSF 396 (400)
T ss_pred eEEee--cCCCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 55543 245699999976668999999999999876654
No 104
>PRK07678 aminotransferase; Validated
Probab=60.35 E-value=1.3e+02 Score=30.73 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=27.0
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
+-.|||+|--..|.+||+++++.+++.+..+
T Consensus 420 ~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 420 NNVLTLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred CCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 4689999988889999999999999887654
No 105
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=60.32 E-value=1.4e+02 Score=30.11 Aligned_cols=41 Identities=17% Similarity=0.048 Sum_probs=30.4
Q ss_pred ceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 284 SLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 284 ~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
++.+......+.+||++|--..+.++|++.++.|++.++.+
T Consensus 384 Gv~~~~~~~~~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~~ 424 (425)
T PRK08088 384 GLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIIAQCFDEA 424 (425)
T ss_pred CCEEecCCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence 44454433345789999976678999999999999877643
No 106
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=59.70 E-value=95 Score=30.49 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=26.9
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHhhhh
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVYSGS 325 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~il~ 325 (337)
.-+|||+|--..|.+||+++++.|++.+..+.
T Consensus 365 ~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~~ 396 (398)
T PRK03244 365 PDVIRLAPPLIITDAQVDAFVAALPAILDAAA 396 (398)
T ss_pred CCEEEEECCCcCCHHHHHHHHHHHHHHHHhcc
Confidence 36899999666689999999999999887654
No 107
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=59.41 E-value=1.8e+02 Score=28.43 Aligned_cols=98 Identities=9% Similarity=0.036 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCC---CCCcchhhH
Q psy2480 191 DILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGW---GPVPAYYDK 267 (337)
Q Consensus 191 ~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~---e~~~~y~D~ 267 (337)
+..++.+..+++|.+.|++. +++++... ++..+.|.|++ | .... +... +
T Consensus 268 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~---------------------~s~t~~v~~~~-~-~~~~~~~~~~~---~- 319 (370)
T TIGR02539 268 KRWDEEVKKTRWFVAELEDI-GFIQLGQK---------------------PKEHDLVKFET-P-GFHEIAQKHKR---R- 319 (370)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CcEEEccC---------------------CCcCceEEEEC-C-chhHHhhhhcc---c-
Confidence 34455567778899999886 58776311 35567777775 3 1100 0000 0
Q ss_pred HHHHHHHHHhhcCCCcceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhh
Q psy2480 268 LNSWLGQILQRDVPSVSLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYS 323 (337)
Q Consensus 268 LNswLgqiL~~~~~~~~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~i 323 (337)
...+.+.|.+.+ +..+.- ....++|++.. .-|.+|++++++.|++....
T Consensus 320 -~~~~~~~L~e~G----I~~ir~-~~~~~iRis~~-~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 320 -GYFLYEELKKRG----IHGIRS-GQTKYFKLSVY-GLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred -cHHHHHHHHhCC----CccccC-CcceEEEEEec-CCCHHHHHHHHHHHHHHHHh
Confidence 112334444332 221111 11249999974 45999999999999876553
No 108
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=59.06 E-value=74 Score=32.15 Aligned_cols=86 Identities=14% Similarity=0.201 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhHHH
Q psy2480 190 QDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDKLN 269 (337)
Q Consensus 190 ~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~LN 269 (337)
...=+|+-++|+++.+.+.+.|++++.. +++.+.|-.+. |+.. .
T Consensus 251 ~~~~~Han~mA~~La~~~~~~~G~~~~~-----------------------~~~tN~vf~~l-~~~~--------i---- 294 (342)
T COG2008 251 RLAADHANAMAARLAEGLEAKPGVKLAF-----------------------PVETNMVFVRL-PESA--------I---- 294 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhcCCceecc-----------------------CCcccEEEEEC-ChHH--------H----
Confidence 4556777888999999999999999997 55555555554 2211 0
Q ss_pred HHHHHHHhhcCCCcceEEEEee--e--CcEEEEEecCCCCChhHHHHHHHHHHHH
Q psy2480 270 SWLGQILQRDVPSVSLNLTETA--A--FGTVLRICPFECSSGGDYESFLVCLDAQ 320 (337)
Q Consensus 270 swLgqiL~~~~~~~~~~v~et~--~--~G~~LRfcplnp~T~edI~~~v~~L~~~ 320 (337)
..+...+- ..++. . +|..+||+.---.+++||++++..+++.
T Consensus 295 ----~~l~~~~~-----~~~~~~~~~~~~~~vRfvts~a~~~edv~~~~~~~~~~ 340 (342)
T COG2008 295 ----EALRLAGA-----LFYRGVLIGAHGEIVRFVTSWATSEEDVDELVAAIKAL 340 (342)
T ss_pred ----HHHHhhch-----hheeeeeccCCCceEEEEeeccCCHHHHHHHHHHHHHh
Confidence 12222222 12221 1 2258999765555899999999998875
No 109
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=58.08 E-value=89 Score=32.25 Aligned_cols=46 Identities=13% Similarity=0.007 Sum_probs=36.1
Q ss_pred ceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhhhhcccc
Q psy2480 284 SLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYSGSQGLF 329 (337)
Q Consensus 284 ~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~il~~t~~ 329 (337)
++.+..+..++.+|||+|--..|.+||+++++.+++.+..+..-+|
T Consensus 412 Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~~~~~~~ 457 (459)
T PRK11522 412 RVLVAGTLNNAKTIRIEPPLTLTIEQCEQVLKAARKALAAMRVSVE 457 (459)
T ss_pred CeEEEecCCCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4666555446679999997777999999999999998887765543
No 110
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=57.44 E-value=66 Score=32.75 Aligned_cols=98 Identities=11% Similarity=0.107 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhH
Q psy2480 188 GIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDK 267 (337)
Q Consensus 188 ~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~ 267 (337)
+..++.++..+++++|.+.|.+. +++++...+ +....+|.|.. ++.+
T Consensus 300 ~~~~~~~~i~~l~~~l~~~L~~~-g~~v~~~~~--------------------~~~~~~v~~~~--~~~~---------- 346 (452)
T PTZ00094 300 EWKEYAKQVLKNAKALAAALEKR-GYDLVTGGT--------------------DNHLVLVDLRP--FGIT---------- 346 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhC-CcEEecCCC--------------------CCceEeecCCc--CCCC----------
Confidence 44456677888999999999875 888875100 12234444433 2222
Q ss_pred HHHHHHHHHhhcCCCcceEEEEeee-------CcEEEEEecCCCC----ChhHHHHHHHHHHHHHhh
Q psy2480 268 LNSWLGQILQRDVPSVSLNLTETAA-------FGTVLRICPFECS----SGGDYESFLVCLDAQVYS 323 (337)
Q Consensus 268 LNswLgqiL~~~~~~~~~~v~et~~-------~G~~LRfcplnp~----T~edI~~~v~~L~~~~~i 323 (337)
-..+.+.|.+ . ++.+..... ..-.+|+++-.-. +++||+.+++.|++.+..
T Consensus 347 -~~~~~~~L~~-~---gI~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 347 -GSKMEKLLDA-V---NISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred -HHHHHHHHHH-C---CcEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 1122334422 1 233432111 1248999984443 599999999999987764
No 111
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=57.10 E-value=1.5e+02 Score=31.04 Aligned_cols=111 Identities=13% Similarity=0.153 Sum_probs=73.8
Q ss_pred ccccccCcchhhHHHHh------------hChhhHHHHHHHHHHHHHHHHHHHhhCC-CeEEeecCCCCCCcceeeeccc
Q psy2480 167 QTNEKAIALPVWTTLKS------------MGQTGIQDILTFNFSLVESIRQKLSEYP-CLRILSHGPVSGLGLKEVTSQY 233 (337)
Q Consensus 167 q~srr~~AL~lW~~Lq~------------LG~d~i~~~I~~t~~La~~~~e~L~~~p-~LeiL~~~~waglg~v~~~~~~ 233 (337)
|.-||.+|=.--|+=|+ +|.+|+.++=+...+++..+.+.|++.. +++++.
T Consensus 323 QHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~---------------- 386 (450)
T COG0403 323 QHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVF---------------- 386 (450)
T ss_pred HHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEecc----------------
Confidence 45577777665555333 6999999999999999999999999877 788886
Q ss_pred cCccccccccceeEEEEecCCCCCCCCCcchhhHHHHHHH-HHHhhcCCCcceEEEEeeeCcEEEEEecCCCCChhHHHH
Q psy2480 234 LPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDKLNSWLG-QILQRDVPSVSLNLTETAAFGTVLRICPFECSSGGDYES 312 (337)
Q Consensus 234 ~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~LNswLg-qiL~~~~~~~~~~v~et~~~G~~LRfcplnp~T~edI~~ 312 (337)
+.-...+++|+.. + .+..|. ..+..... +.....+ .+=+|.-+..|.+||+.
T Consensus 387 -------~~fFdt~~v~~~~-~------------~~~~l~~~~~~~G~~---L~~~~~~----~~~ia~tEt~t~~~i~~ 439 (450)
T COG0403 387 -------DHFFDTFTVRVPE-E------------VAEALLAAAIAGGIN---LRRVDAD----TVLIALTETTTKEDIDA 439 (450)
T ss_pred -------ccceeeEEEecch-h------------HHHHHHHHHHhcCCc---eeeecCC----ceEEEeecccCHHHHHH
Confidence 4557778888732 1 122211 22222222 3222222 44456667778999999
Q ss_pred HHHHHHHH
Q psy2480 313 FLVCLDAQ 320 (337)
Q Consensus 313 ~v~~L~~~ 320 (337)
+++.+...
T Consensus 440 l~~~~~~~ 447 (450)
T COG0403 440 LVAAFGGV 447 (450)
T ss_pred HHHHHhhh
Confidence 99988754
No 112
>PRK06541 hypothetical protein; Provisional
Probab=55.62 E-value=1.9e+02 Score=29.79 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=32.5
Q ss_pred ceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhhhhc
Q psy2480 284 SLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYSGSQ 326 (337)
Q Consensus 284 ~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~il~~ 326 (337)
++.+.....+.-.|||+|--..|++||+++++.|++.+..+.+
T Consensus 416 Gi~~~~~~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~~~ 458 (460)
T PRK06541 416 GLYCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVLTEAWA 458 (460)
T ss_pred CeEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3555432223468999998777999999999999999877654
No 113
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=54.65 E-value=87 Score=30.04 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.0
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHH
Q psy2480 295 TVLRICPFECSSGGDYESFLVCLDAQ 320 (337)
Q Consensus 295 ~~LRfcplnp~T~edI~~~v~~L~~~ 320 (337)
.++|++|-...+.+|++++++.|++.
T Consensus 359 ~~lRis~~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 359 SRLRITLTAAHTEADIDRLLEALAEA 384 (385)
T ss_pred ceEEEEecCCCCHHHHHHHHHHHHhc
Confidence 59999996656899999999998763
No 114
>PRK06105 aminotransferase; Provisional
Probab=54.52 E-value=55 Score=33.66 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=28.6
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHhhhhc
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVYSGSQ 326 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~il~~ 326 (337)
|.++||+|=-..|++||+++++.+++.+..+..
T Consensus 420 g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~ 452 (460)
T PRK06105 420 GDTLAFCPPLIITAAQVDEMVDRFGRALDDVAA 452 (460)
T ss_pred CCEEEEECCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 458999998878999999999999999887655
No 115
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=54.08 E-value=94 Score=30.32 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=26.3
Q ss_pred ceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHH
Q psy2480 284 SLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQ 320 (337)
Q Consensus 284 ~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~ 320 (337)
++.+.... +.++|++|-...|.+||+++++.|++.
T Consensus 378 gv~v~~~~--~~~lR~~~~~~~t~~~i~~~~~~l~~~ 412 (413)
T cd00610 378 GLLLRPSG--GNVIRLLPPLIITEEEIDEGLDALDEA 412 (413)
T ss_pred CeEEeecC--CCEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 35554432 568999996666999999999998764
No 116
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=52.67 E-value=1.1e+02 Score=29.87 Aligned_cols=97 Identities=10% Similarity=0.122 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhHH
Q psy2480 189 IQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDKL 268 (337)
Q Consensus 189 i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~L 268 (337)
..++.+...+.++.+.+.|.+. +++++.. +.....+.+++.+.+.+ . +++
T Consensus 277 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----------------------~~~~~~v~v~~~~~~~~----~---~~~ 326 (402)
T cd00378 277 FKAYAKQVVENAKALAEALKER-GFKVVSG----------------------GTDNHLVLVDLRPKGIT----G---KAA 326 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCeEeec----------------------CCCCeEEEEeCCccCCC----H---HHH
Confidence 3456666778888899998887 7777631 12345555666433322 0 111
Q ss_pred HHHHHHHHhhcCCCcceEEEE----ee----eCcEEEEEecCCCC----ChhHHHHHHHHHHHHHhh
Q psy2480 269 NSWLGQILQRDVPSVSLNLTE----TA----AFGTVLRICPFECS----SGGDYESFLVCLDAQVYS 323 (337)
Q Consensus 269 NswLgqiL~~~~~~~~~~v~e----t~----~~G~~LRfcplnp~----T~edI~~~v~~L~~~~~i 323 (337)
.+.|.+. ++.+.. .. ....++|+|+.... +.+||+.+++.|++.+..
T Consensus 327 ----~~~l~~~----gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~ 385 (402)
T cd00378 327 ----EDALEEA----GITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKD 385 (402)
T ss_pred ----HHHHHHc----CcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 1223221 233321 11 12358999885542 799999999999986543
No 117
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=52.22 E-value=2.2e+02 Score=28.71 Aligned_cols=40 Identities=23% Similarity=0.166 Sum_probs=29.6
Q ss_pred eEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 285 LNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 285 ~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
+.+.....++.+|||+|--..|.+||+++++.|++.+..+
T Consensus 391 v~~~~~g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~ 430 (433)
T PRK08117 391 LLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEALTEY 430 (433)
T ss_pred CEEeecCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 3343333345699999866668999999999999887654
No 118
>PLN02483 serine palmitoyltransferase
Probab=51.73 E-value=1e+02 Score=31.94 Aligned_cols=31 Identities=19% Similarity=0.057 Sum_probs=26.7
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHhhhh
Q psy2480 295 TVLRICPFECSSGGDYESFLVCLDAQVYSGS 325 (337)
Q Consensus 295 ~~LRfcplnp~T~edI~~~v~~L~~~~~il~ 325 (337)
-.+|||+--..|.+||++.++.|++.++.+.
T Consensus 438 ~~vRi~isa~~t~edId~~l~~L~~~~~~~~ 468 (489)
T PLN02483 438 ARARICISASHSREDLIKALEVISEVGDLVG 468 (489)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4799999877799999999999999887653
No 119
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=51.56 E-value=2.2e+02 Score=28.00 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=24.1
Q ss_pred CcEEEEEecCCCCChhHHHHHHHHHHHHH
Q psy2480 293 FGTVLRICPFECSSGGDYESFLVCLDAQV 321 (337)
Q Consensus 293 ~G~~LRfcplnp~T~edI~~~v~~L~~~~ 321 (337)
++-+|||||=...|.+||+++++.|++.+
T Consensus 371 ~~~~lR~~p~~~~t~e~i~~~i~~l~~~l 399 (401)
T PRK00854 371 HDHTIRLAPPLVITREQVDWALEQIAKVL 399 (401)
T ss_pred CCCEEEEeCCcccCHHHHHHHHHHHHHHh
Confidence 34699999966679999999999998754
No 120
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=51.18 E-value=23 Score=34.19 Aligned_cols=45 Identities=22% Similarity=0.359 Sum_probs=39.9
Q ss_pred hhchhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEe
Q psy2480 34 AIALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRIL 78 (337)
Q Consensus 34 l~aLplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~il 78 (337)
...+.+|.+++.++..++-++.++...+++.+.+.|.+++++++.
T Consensus 256 ~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 300 (373)
T cd06453 256 AGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVY 300 (373)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence 357789999999998888888888889999999999999999988
No 121
>PRK06062 hypothetical protein; Provisional
Probab=51.04 E-value=2e+02 Score=29.54 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=27.4
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHhhhhc
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVYSGSQ 326 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~il~~ 326 (337)
+-+|||+|--..|.+||+++++.+++.+..++.
T Consensus 416 ~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~~~ 448 (451)
T PRK06062 416 GNRIHVVPPCTVTEDEVREGLAILDAALAVADA 448 (451)
T ss_pred CCEEEEECCccCCHHHHHHHHHHHHHHHHHhhh
Confidence 457999886666999999999999998877653
No 122
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=50.62 E-value=97 Score=31.73 Aligned_cols=31 Identities=10% Similarity=0.178 Sum_probs=26.2
Q ss_pred CcEEEEEecCCCCChhHHHHHHHHHHHHHhh
Q psy2480 293 FGTVLRICPFECSSGGDYESFLVCLDAQVYS 323 (337)
Q Consensus 293 ~G~~LRfcplnp~T~edI~~~v~~L~~~~~i 323 (337)
.|-+|||+|--..|.+||+++++.|++.+..
T Consensus 413 ~~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~ 443 (445)
T PRK09221 413 TGDTIALSPPLIIEKAQIDELVDALGDALRA 443 (445)
T ss_pred cCCEEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 3568999987777999999999999988754
No 123
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=50.57 E-value=1.4e+02 Score=31.06 Aligned_cols=102 Identities=13% Similarity=0.129 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhH
Q psy2480 188 GIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDK 267 (337)
Q Consensus 188 ~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~ 267 (337)
+..++.++..+++++|.+.+.+ .+++++.. .....++.+.+.|.+.+
T Consensus 311 ~~~~~~~~~~~na~~L~~~L~~-~G~~l~~~----------------------~t~~hi~lv~~~~~gi~---------- 357 (475)
T PLN03226 311 EFKAYQKQVKANAAALANRLMS-KGYKLVTG----------------------GTDNHLVLWDLRPLGLT---------- 357 (475)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh-CCCEEEcC----------------------CCCCCEEEEEccCCCCC----------
Confidence 4445678888999999999888 79999972 12245666777776644
Q ss_pred HHHHHHHHHhhcCCCcceEEEE---eeeCcEEEEEec--CCCC--ChhHHHHHHHHHHHHHhh
Q psy2480 268 LNSWLGQILQRDVPSVSLNLTE---TAAFGTVLRICP--FECS--SGGDYESFLVCLDAQVYS 323 (337)
Q Consensus 268 LNswLgqiL~~~~~~~~~~v~e---t~~~G~~LRfcp--lnp~--T~edI~~~v~~L~~~~~i 323 (337)
...+.+.|.+..--.+-..+. .....-.+|+.. +..+ +++|++++++.|.+.+..
T Consensus 358 -~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 358 -GSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred -HHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 112223333322100000000 001112456522 2223 689999999999888874
No 124
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=50.13 E-value=3e+02 Score=28.15 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=32.9
Q ss_pred CcEEEEEecCCCCChhHHHHHHHHHHHHHhhhhccccccC
Q psy2480 293 FGTVLRICPFECSSGGDYESFLVCLDAQVYSGSQGLFHLP 332 (337)
Q Consensus 293 ~G~~LRfcplnp~T~edI~~~v~~L~~~~~il~~t~~~~~ 332 (337)
++-+|||+|--..|.+||+.+++.+++.+..+...=+..|
T Consensus 399 ~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~~~~~~~ 438 (445)
T PRK08593 399 AGNVLRFQPPLVITYEQLDTALNTIEQAFTALEAGKLDQP 438 (445)
T ss_pred CCCEEEEECCCccCHHHHHHHHHHHHHHHHHHhccccCCh
Confidence 4568999998878999999999999999988766555444
No 125
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=49.85 E-value=1.3e+02 Score=29.15 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=19.6
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHH
Q psy2480 295 TVLRICPFECSSGGDYESFLVCLDAQ 320 (337)
Q Consensus 295 ~~LRfcplnp~T~edI~~~v~~L~~~ 320 (337)
.++|+|. .+.+|++.+++.|+++
T Consensus 330 ~~lRis~---~~~e~~~~l~~al~~~ 352 (354)
T PRK04635 330 NCIRFSF---SNRAETDKLIGLIRNQ 352 (354)
T ss_pred CeEEEEe---CCHHHHHHHHHHHHHh
Confidence 4899995 3789999999999875
No 126
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=49.84 E-value=43 Score=32.50 Aligned_cols=61 Identities=28% Similarity=0.353 Sum_probs=45.6
Q ss_pred hhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEeecCCCCCCchhhhhhccCCccccccccceeEEEEeccCC
Q psy2480 38 PVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILSHGPVSGMGLKEVTSQYLPVQTILESVQSCVVFQFVPKD 117 (337)
Q Consensus 38 plW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~ils~~~~~~~~~~d~~~~~~~~~~lfe~~~pvvvFqf~~~~ 117 (337)
-+-.+++.+..-|+.+..++..++++.+.+.|.+++++++++.. .+ +...+++.|.+.+.+
T Consensus 260 ~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~-------~~------------~~~~~i~~~~~~~~~ 320 (371)
T PF00266_consen 260 ALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPD-------DE------------PRRPSIVSFNLPGSD 320 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSS-------CG------------GBGTTEEEEEETTSS
T ss_pred hHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeec-------cc------------ccccceEEEeecCCC
Confidence 34567777766666666678889999999999999999998422 11 456788889995544
No 127
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=48.84 E-value=2.5e+02 Score=26.97 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=25.2
Q ss_pred ceEEEEeeeCc--EEEEEecCCCCChhHHHHHHHHHHHHH
Q psy2480 284 SLNLTETAAFG--TVLRICPFECSSGGDYESFLVCLDAQV 321 (337)
Q Consensus 284 ~~~v~et~~~G--~~LRfcplnp~T~edI~~~v~~L~~~~ 321 (337)
++.+......| .++|+|+- +.++++.+++.|++.+
T Consensus 328 gI~v~~~~~~~~~~~iRis~~---~~~e~~~l~~aL~~~~ 364 (367)
T PRK02731 328 GVIVRPVAGYGLPNALRITIG---TEEENRRFLAALKEFL 364 (367)
T ss_pred CEEEEeCCCCCCCCeEEEecC---CHHHHHHHHHHHHHHH
Confidence 46666554333 48999974 6889999999998754
No 128
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=48.78 E-value=2.1e+02 Score=28.21 Aligned_cols=97 Identities=9% Similarity=0.120 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhh
Q psy2480 187 TGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYD 266 (337)
Q Consensus 187 d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D 266 (337)
+++-+++++-.+.++.+.+.|++. ++++... ....+.+.+++.+.+.+ .+
T Consensus 279 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----------------------~~~~~~~~i~~~~~~~~-------~~ 328 (416)
T PRK00011 279 PEFKEYAQQVVKNAKALAEALAER-GFRVVSG----------------------GTDNHLVLVDLRSKGLT-------GK 328 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhC-CCeeeec----------------------CCCCeEEEEeCcccCCC-------HH
Confidence 345667888888999999999875 6766530 12345666666433322 01
Q ss_pred HHHHHHHHHHhhcCCCcceEEEE-------eee-CcEEEEEecCC--C--CChhHHHHHHHHHHHHH
Q psy2480 267 KLNSWLGQILQRDVPSVSLNLTE-------TAA-FGTVLRICPFE--C--SSGGDYESFLVCLDAQV 321 (337)
Q Consensus 267 ~LNswLgqiL~~~~~~~~~~v~e-------t~~-~G~~LRfcpln--p--~T~edI~~~v~~L~~~~ 321 (337)
. +.+.|.+. ++.+.. ... ...++|++.-. . .|.+||+.+++.|++..
T Consensus 329 ~----~~~~L~~~----GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~ 387 (416)
T PRK00011 329 E----AEAALEEA----NITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVL 387 (416)
T ss_pred H----HHHHHHHc----CcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHH
Confidence 2 22333222 122321 111 12368985422 1 27899999999998753
No 129
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=47.93 E-value=3.1e+02 Score=28.08 Aligned_cols=33 Identities=24% Similarity=0.145 Sum_probs=28.5
Q ss_pred CcEEEEEecCCCCChhHHHHHHHHHHHHHhhhh
Q psy2480 293 FGTVLRICPFECSSGGDYESFLVCLDAQVYSGS 325 (337)
Q Consensus 293 ~G~~LRfcplnp~T~edI~~~v~~L~~~~~il~ 325 (337)
.+-+|||+|--..|.+||+++++.+++.+..+.
T Consensus 396 ~~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~~ 428 (443)
T PRK08360 396 SGNVLRIQPPLTIEKEVLDEGLDILEEAIEDVE 428 (443)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 457899998887899999999999999887763
No 130
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=47.83 E-value=94 Score=29.66 Aligned_cols=85 Identities=20% Similarity=0.255 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhHH
Q psy2480 189 IQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDKL 268 (337)
Q Consensus 189 i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~L 268 (337)
+.++.+..-+.++.+.+.+++.|++++.. .....+.|.+.. + . +
T Consensus 259 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~------------------------~~g~~~~~~~~~---~----~---~-- 302 (346)
T TIGR01141 259 IEKTVEEINAERERLYDGLKKLPGLEVYP------------------------SDANFVLIRFPR---D----A---D-- 302 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEECC------------------------CcCCEEEEecCC---C----H---H--
Confidence 44455666677788888888888887543 223455566531 1 0 1
Q ss_pred HHHHHHHHhhcCCCcceEEEEeeeC---cEEEEEecCCCCChhHHHHHHHHHH
Q psy2480 269 NSWLGQILQRDVPSVSLNLTETAAF---GTVLRICPFECSSGGDYESFLVCLD 318 (337)
Q Consensus 269 NswLgqiL~~~~~~~~~~v~et~~~---G~~LRfcplnp~T~edI~~~v~~L~ 318 (337)
-+.+.|.+. ++.+...... +.++|+|+- +.+|++++++.|+
T Consensus 303 --~~~~~L~~~----gI~v~~g~~f~~~~~~iRls~~---~~~~i~~~~~~l~ 346 (346)
T TIGR01141 303 --ALFEALLEK----GIIVRDLNSYPGLPNCLRITVG---TREENDRFLAALR 346 (346)
T ss_pred --HHHHHHHHC----CeEEEeCCCcCCCCCeEEEecC---CHHHHHHHHHHhC
Confidence 123333321 3556555431 358999954 7899999988764
No 131
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=47.75 E-value=48 Score=33.03 Aligned_cols=45 Identities=22% Similarity=0.376 Sum_probs=36.5
Q ss_pred chhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEeec
Q psy2480 36 ALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILSH 80 (337)
Q Consensus 36 aLplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~ils~ 80 (337)
...++.++.++...|+-+..++.-.+++.+++.|++++++++++.
T Consensus 292 ~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~ 336 (424)
T PLN02855 292 AIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGP 336 (424)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 455777777776667777777888899999999999999999954
No 132
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=47.69 E-value=47 Score=32.54 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=36.4
Q ss_pred hchhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEee
Q psy2480 35 IALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILS 79 (337)
Q Consensus 35 ~aLplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~ils 79 (337)
..+.++.+++++...|+.+..++..++.+.+.+.|.+++++++++
T Consensus 277 ~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~ 321 (403)
T TIGR01979 277 GVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRIYG 321 (403)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence 456678888887666666677788889999999999999999983
No 133
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=47.38 E-value=50 Score=33.72 Aligned_cols=50 Identities=22% Similarity=0.108 Sum_probs=35.1
Q ss_pred HHHHHHhhcCCCcceEEEEeeeCcE-EEEEecCCCCChhHHHHHHHHHHHH
Q psy2480 271 WLGQILQRDVPSVSLNLTETAAFGT-VLRICPFECSSGGDYESFLVCLDAQ 320 (337)
Q Consensus 271 wLgqiL~~~~~~~~~~v~et~~~G~-~LRfcplnp~T~edI~~~v~~L~~~ 320 (337)
+....|++.+--....--+|.-.|+ -||+|+.---|.+||+.+++.+.+.
T Consensus 337 ~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 337 EASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred HHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 3445555554433344445555776 9999998888999999999998764
No 134
>PRK06148 hypothetical protein; Provisional
Probab=46.89 E-value=2.3e+02 Score=32.53 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=32.7
Q ss_pred ceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 284 SLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 284 ~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
++.+..+..++.+|||.|--..|.+||+++++.|++.+..+
T Consensus 971 Gvl~~~~g~~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 971 GILIGTEGPHDNVLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred CeEEeccCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 46665554467899999877779999999999999887654
No 135
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=46.86 E-value=81 Score=33.04 Aligned_cols=36 Identities=6% Similarity=0.114 Sum_probs=29.1
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHhhhhcccc
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVYSGSQGLF 329 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~il~~t~~ 329 (337)
|.++||+|--..|.+||+++++.+++.+..+..-+-
T Consensus 462 g~~lrl~Ppl~it~eeid~~~~~l~~al~~~~~~~~ 497 (504)
T PLN02760 462 GDNIMMSPPLIITPEEVDELISIYGKALKATEERVA 497 (504)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899987777999999999999998887754443
No 136
>PRK07483 hypothetical protein; Provisional
Probab=46.59 E-value=2.6e+02 Score=28.63 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=27.8
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHhhhhc
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVYSGSQ 326 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~il~~ 326 (337)
|-+|||+|--..|.+||+++++.|++.+..+.+
T Consensus 408 ~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~~ 440 (443)
T PRK07483 408 GDHVLLAPPFIITAAQIDEIVERLGDAIDAALA 440 (443)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999997778999999999999998876543
No 137
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=46.51 E-value=1.2e+02 Score=29.94 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=26.1
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 295 TVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 295 ~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
.+||+||--..|.+||+++++.|++....+
T Consensus 368 ~~iRis~~~~~t~edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 368 ERLRITPSPLHTDADIEHLVQALSEIWARL 397 (406)
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence 689999987779999999999999876654
No 138
>KOG0629|consensus
Probab=46.26 E-value=31 Score=36.11 Aligned_cols=53 Identities=19% Similarity=0.333 Sum_probs=48.0
Q ss_pred ccccHHHHhhchhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEe
Q psy2480 26 LSMQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRIL 78 (337)
Q Consensus 26 ~~~~~~~kl~aLplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~il 78 (337)
-..|-..+.+..-+|+.+++=|-.|.-+.|..++.+++-+.++|++-++-..|
T Consensus 367 K~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l 419 (510)
T KOG0629|consen 367 KAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEML 419 (510)
T ss_pred chhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceeh
Confidence 46678889999999999999999999999999999999999999988776655
No 139
>PF13991 BssS: BssS protein family
Probab=45.89 E-value=60 Score=25.80 Aligned_cols=50 Identities=10% Similarity=0.181 Sum_probs=40.7
Q ss_pred eEEEEeeeCc-EEEEEecCCCC---------------ChhHHHHHHHHHHHHHhhhhccccccCCC
Q psy2480 285 LNLTETAAFG-TVLRICPFECS---------------SGGDYESFLVCLDAQVYSGSQGLFHLPSG 334 (337)
Q Consensus 285 ~~v~et~~~G-~~LRfcplnp~---------------T~edI~~~v~~L~~~~~il~~t~~~~~~~ 334 (337)
-+|.+...++ .+|||--+++. |.|..+.++..|+++++.+.++=.|.|..
T Consensus 6 W~i~pv~~~dal~lrl~yls~~~q~~e~a~~~~~~~lT~e~Ar~Li~~L~~~I~kiE~se~~~~~~ 71 (73)
T PF13991_consen 6 WDIGPVDSYDALMLRLHYLSSPDQPPEEAQVGRTYWLTTEMARQLISILEAGIDKIESSEYQKPDY 71 (73)
T ss_pred ceeccccccceeEEEecccCCCCCCccccccCceeEecHHHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 4455566666 69999999883 78999999999999999999988888764
No 140
>PLN02651 cysteine desulfurase
Probab=45.36 E-value=1.6e+02 Score=28.65 Aligned_cols=29 Identities=14% Similarity=0.030 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCeEEee
Q psy2480 189 IQDILTFNFSLVESIRQKLSE-YPCLRILS 217 (337)
Q Consensus 189 i~~~I~~t~~La~~~~e~L~~-~p~LeiL~ 217 (337)
.-.+.++.-++++++.+.+++ .|+++++.
T Consensus 257 ~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~ 286 (364)
T PLN02651 257 MDYDEKHMKALRERLLNGLRAKLGGVRVNG 286 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCEEEEC
Confidence 344557788899999999985 78999997
No 141
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=45.05 E-value=1.7e+02 Score=28.52 Aligned_cols=28 Identities=4% Similarity=-0.027 Sum_probs=24.1
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHh
Q psy2480 295 TVLRICPFECSSGGDYESFLVCLDAQVY 322 (337)
Q Consensus 295 ~~LRfcplnp~T~edI~~~v~~L~~~~~ 322 (337)
..+|+++--..|.+||+++++.|++...
T Consensus 361 ~~iRis~~~~~t~edi~~~~~~l~~~~~ 388 (393)
T TIGR01822 361 ARIRVQISAAHTEEQLDRAVEAFTRIGR 388 (393)
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 4799998877799999999999988654
No 142
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=44.36 E-value=3.7e+02 Score=27.59 Aligned_cols=139 Identities=19% Similarity=0.302 Sum_probs=88.1
Q ss_pred cccccchhccccccc-ccccCCCCccccccccCcchhhH----HHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEe
Q psy2480 142 AYYDKLNSWLGFTNI-GDDLSTPLSMQTNEKAIALPVWT----TLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRIL 216 (337)
Q Consensus 142 ~~~d~ln~WLG~~~~-p~V~~~~ld~q~srr~~AL~lW~----~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL 216 (337)
+|+.+|..|+.-..- +.-+|.+ +..+.. +|+.+=.+|+-.++++.-.+++.+.+.+++. +|+++
T Consensus 221 ~~ylDL~~~~~~~~~~~~~p~Tp----------pv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al-Gl~~~ 289 (383)
T COG0075 221 SFYLDLKKWLKYMEKKGSTPYTP----------PVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL-GLELF 289 (383)
T ss_pred ceeecHHHHHHHHhhcCCCCCCC----------CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCccc
Confidence 577777777754422 2222222 111222 3333455778899999999999999998865 46666
Q ss_pred ecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhHHHHHHHHHHhhcCCCcceEEEEee--eCc
Q psy2480 217 SHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETA--AFG 294 (337)
Q Consensus 217 ~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~--~~G 294 (337)
.. + +..+|+|+==+.|.+.+ ++ ++...+.+.+. +++...- +.|
T Consensus 290 ~~-~--------------------~~~s~tvta~~~P~g~~-~~----------~~~~~~~~~~g---~~i~gg~~~l~g 334 (383)
T COG0075 290 AD-P--------------------ERRSPTVTAIKVPEGVD-DK----------KVRRALLKEYG---VEIAGGQGPLKG 334 (383)
T ss_pred cC-c--------------------ccCCCceEEEECCCCCC-cH----------HHHHHHHHhCC---EEecccccccCc
Confidence 52 1 24455555556677754 11 11123333333 6666664 477
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHhhhhc
Q psy2480 295 TVLRICPFECSSGGDYESFLVCLDAQVYSGSQ 326 (337)
Q Consensus 295 ~~LRfcplnp~T~edI~~~v~~L~~~~~il~~ 326 (337)
.++|+.-+-..+.+|+...+..|+..+..+..
T Consensus 335 kifRIGhMG~~~~~dv~~~l~ale~~L~~~g~ 366 (383)
T COG0075 335 KIFRIGHMGNVRPEDVLAALAALEAALRELGV 366 (383)
T ss_pred cEEEEecCccCCHHHHHHHHHHHHHHHHHcCC
Confidence 89999999977999999999999988776644
No 143
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=43.73 E-value=1.5e+02 Score=28.75 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=24.7
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHhh
Q psy2480 295 TVLRICPFECSSGGDYESFLVCLDAQVYS 323 (337)
Q Consensus 295 ~~LRfcplnp~T~edI~~~v~~L~~~~~i 323 (337)
.++|++|--..+.+||+++++.|++.+..
T Consensus 353 ~~iRi~~~~~~~~e~i~~~~~~l~~~~~~ 381 (385)
T TIGR01825 353 ARIRNIPTAEHTKDDLDQALDAYEKVGKE 381 (385)
T ss_pred ceEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 68999987667999999999999887654
No 144
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=43.54 E-value=26 Score=36.11 Aligned_cols=39 Identities=10% Similarity=0.342 Sum_probs=36.9
Q ss_pred hhchhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccC
Q psy2480 34 AIALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEY 72 (337)
Q Consensus 34 l~aLplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~ 72 (337)
+.++-.|..+.++|.+|+.+..+++..+++.+.++|+++
T Consensus 330 l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~ 368 (481)
T PRK04366 330 GVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI 368 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 778999999999999999999999999999999999887
No 145
>PRK07481 hypothetical protein; Provisional
Probab=43.38 E-value=3.7e+02 Score=27.54 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=25.7
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
|..+|++|-...|++||+++++.|++.+..+
T Consensus 416 g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 416 GTKIILSPPLVIQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3358998877779999999999999987654
No 146
>PRK06225 aspartate aminotransferase; Provisional
Probab=42.41 E-value=3.3e+02 Score=26.47 Aligned_cols=29 Identities=14% Similarity=-0.011 Sum_probs=24.0
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHhhhh
Q psy2480 295 TVLRICPFECSSGGDYESFLVCLDAQVYSGS 325 (337)
Q Consensus 295 ~~LRfcplnp~T~edI~~~v~~L~~~~~il~ 325 (337)
.++|+|... +.++++++++.|+..++.+.
T Consensus 350 ~~iR~s~~~--~~e~l~~~~~~l~~~~~~~~ 378 (380)
T PRK06225 350 RYIRVSFSI--PREQVEVFCEEFPDVVETLR 378 (380)
T ss_pred ceEEEEeCC--CHHHHHHHHHHHHHHHHHhh
Confidence 489999754 68999999999999887654
No 147
>PRK12403 putative aminotransferase; Provisional
Probab=42.30 E-value=3.9e+02 Score=27.52 Aligned_cols=30 Identities=7% Similarity=0.066 Sum_probs=26.2
Q ss_pred EEEEecCCCCChhHHHHHHHHHHHHHhhhh
Q psy2480 296 VLRICPFECSSGGDYESFLVCLDAQVYSGS 325 (337)
Q Consensus 296 ~LRfcplnp~T~edI~~~v~~L~~~~~il~ 325 (337)
.+||+|=...|.+||+++++.+++.++.+.
T Consensus 425 ~~~l~Ppl~it~~eid~~~~~l~~al~~~~ 454 (460)
T PRK12403 425 RMIMAPALVAGRAEIDELVDKTRIAVDRTA 454 (460)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 479998888899999999999999987763
No 148
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=42.05 E-value=1.4e+02 Score=30.61 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=26.2
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
|-.|||+|--..|.+||+++++.|++.+..+
T Consensus 411 ~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 411 GDILALSPPLIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred CCEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence 4579999888789999999999999887543
No 149
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=41.66 E-value=2.3e+02 Score=27.32 Aligned_cols=30 Identities=3% Similarity=-0.081 Sum_probs=24.6
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 295 TVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 295 ~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
.++|+|+-...+.+||+++++.|++.+..+
T Consensus 365 ~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~ 394 (397)
T PRK06939 365 ARIRTQMSAAHTKEQLDRAIDAFEKVGKEL 394 (397)
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 589998866668999999999998876543
No 150
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=41.56 E-value=1.4e+02 Score=28.25 Aligned_cols=87 Identities=16% Similarity=0.145 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhHHHH
Q psy2480 191 DILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDKLNS 270 (337)
Q Consensus 191 ~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~LNs 270 (337)
.+.++..+.++.+.+.|++. ++++.. ...+.+.|++. ... |. .
T Consensus 269 ~~~~~~~~~~~~l~~~L~~~-~~~~~~------------------------~~~~~~~~~~~-~~~---------~~--~ 311 (360)
T TIGR00858 269 WRREKLLALIARLRAGLEAL-GFTLMP------------------------SCTPIVPVIIG-DNA---------SA--L 311 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCccCC------------------------CCCCEEEEEeC-CHH---------HH--H
Confidence 45667777888888888875 355432 23445666652 111 10 1
Q ss_pred HHHHHHhhcCCCcceEEEEeee-----CcEEEEEecCCCCChhHHHHHHHHHH
Q psy2480 271 WLGQILQRDVPSVSLNLTETAA-----FGTVLRICPFECSSGGDYESFLVCLD 318 (337)
Q Consensus 271 wLgqiL~~~~~~~~~~v~et~~-----~G~~LRfcplnp~T~edI~~~v~~L~ 318 (337)
.+.+.|.+. ++.+..... ++-++|+++--..+.+|++.+++.|+
T Consensus 312 ~~~~~l~~~----gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 312 ALAEELQQQ----GIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred HHHHHHHHC----CeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 233444332 355543221 23589999988778999999998763
No 151
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=41.50 E-value=2.3e+02 Score=28.00 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=25.5
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 295 TVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 295 ~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
.+||+++--.-|.+|++.+++.|++..+.+
T Consensus 369 ~~lRis~~~~~t~edid~l~~aL~~~~~~~ 398 (410)
T PRK13392 369 ERLRITPTPLHDDEDIDALVAALVAIWDRL 398 (410)
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 699999977778999999999999876544
No 152
>PRK07480 putative aminotransferase; Validated
Probab=40.82 E-value=4.2e+02 Score=27.23 Aligned_cols=33 Identities=9% Similarity=0.110 Sum_probs=28.4
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHhhhhc
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVYSGSQ 326 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~il~~ 326 (337)
|-++||+|-...|.+||+++++.|++.+..+..
T Consensus 419 ~~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~ 451 (456)
T PRK07480 419 GDRMIISPPLVITHAEIDELVEKARKALDATAA 451 (456)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 457999988878999999999999999887654
No 153
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=40.81 E-value=4e+02 Score=27.45 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=27.8
Q ss_pred CcEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 293 FGTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 293 ~G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
+|-+|||+|=-..|.+||+++++.+++.+..+
T Consensus 421 ~~~~i~~~Ppl~it~~eid~~~~~l~~~l~~~ 452 (459)
T PRK06082 421 QGNVIQLSPPLIITREELTQALAILEEAIAKI 452 (459)
T ss_pred CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence 56789999877779999999999999988765
No 154
>PRK10534 L-threonine aldolase; Provisional
Probab=40.74 E-value=1.9e+02 Score=27.41 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=18.7
Q ss_pred EEEEecCCCC-ChhHHHHHHHHHHHHH
Q psy2480 296 VLRICPFECS-SGGDYESFLVCLDAQV 321 (337)
Q Consensus 296 ~LRfcplnp~-T~edI~~~v~~L~~~~ 321 (337)
.+|++. +.+ |.++++++++.|++..
T Consensus 306 ~~rl~~-~~r~t~e~~~~~~~~l~~~~ 331 (333)
T PRK10534 306 IVRLVT-HLDVSREQLAEVVAHWRAFL 331 (333)
T ss_pred eEEEEE-EeCCCHHHHHHHHHHHHHHh
Confidence 467766 333 8999999999998543
No 155
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=40.18 E-value=46 Score=33.37 Aligned_cols=42 Identities=14% Similarity=0.304 Sum_probs=37.5
Q ss_pred hhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEe
Q psy2480 37 LPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRIL 78 (337)
Q Consensus 37 LplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~il 78 (337)
+..+.+++++|.+++-++.++..++++.+.+.|+++++++++
T Consensus 336 ~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 377 (447)
T PRK00451 336 LAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELF 377 (447)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEec
Confidence 555667888999999999999999999999999999999887
No 156
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=39.91 E-value=2.1e+02 Score=29.43 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=27.1
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHhhhh
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVYSGS 325 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~il~ 325 (337)
|.++||.|--..|.+||+++++.|++.+..+.
T Consensus 426 g~~l~~~Ppl~it~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06916 426 GNTIVFMPPLASTIDELDEMLRILYKAISDVT 457 (460)
T ss_pred CCEEEEeCCcccCHHHHHHHHHHHHHHHHhhc
Confidence 46899997667799999999999999887654
No 157
>PRK05965 hypothetical protein; Provisional
Probab=39.81 E-value=1.9e+02 Score=29.77 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=27.7
Q ss_pred CcEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 293 FGTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 293 ~G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
++.+|||+|--..|.+||+++++.+++.+..+
T Consensus 417 g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~ 448 (459)
T PRK05965 417 GDGVLGFAPALCCTEGEFDLIFERTRKTLDDV 448 (459)
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 44789999877789999999999999988765
No 158
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=39.54 E-value=2.7e+02 Score=29.11 Aligned_cols=45 Identities=24% Similarity=0.209 Sum_probs=34.6
Q ss_pred CCCcceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 280 VPSVSLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 280 ~~~~~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
+-.-++.+.....+|-+|||.|=-..+.+++++.++.|++.+..+
T Consensus 402 ~~~~Glil~~~G~~~nviRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 402 AFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred HHHcCCEEeccCCCCcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 333345455555688999999987789999999999999877643
No 159
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=39.02 E-value=1.8e+02 Score=30.22 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=30.4
Q ss_pred ceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhhhh
Q psy2480 284 SLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYSGS 325 (337)
Q Consensus 284 ~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~il~ 325 (337)
++.+.. .|-+|||+|=-..|.+||+++++.|++.+..+.
T Consensus 431 Gll~~~---~g~vi~~~PpL~it~~ei~~~~~~l~~~l~~~~ 469 (472)
T PRK08742 431 GVVLRP---LGDVLYWMPPYCVDEAQLALLADTTRHAIDEAV 469 (472)
T ss_pred CeEEEe---cCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 455543 245899999877899999999999999887653
No 160
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=38.97 E-value=4.4e+02 Score=27.13 Aligned_cols=41 Identities=24% Similarity=0.256 Sum_probs=32.0
Q ss_pred ceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 284 SLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 284 ~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
++.+.....++-+|||+|--..|.+||+++++.|++.+..+
T Consensus 404 Gv~~~~~g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~ 444 (457)
T PRK05639 404 GLILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIKDA 444 (457)
T ss_pred CeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence 35554443345699999988789999999999999988765
No 161
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=37.24 E-value=2.6e+02 Score=27.98 Aligned_cols=121 Identities=9% Similarity=0.112 Sum_probs=0.0
Q ss_pred ccCcchhhHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcce---eeeccccCccccccccceeE
Q psy2480 171 KAIALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLK---EVTSQYLPVQTILESVQSCV 247 (337)
Q Consensus 171 r~~AL~lW~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v---~~~~~~~~~~~~~~~~lsvV 247 (337)
.....--|+.++ |.+.+..+++...+.++.+.+.|+++|.++-+- +||+..- ++.++ ++.---+++
T Consensus 240 ~l~~~~a~l~l~--~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~---yp~l~~~~~~~~~~~------~~~~~g~~~ 308 (391)
T TIGR01328 240 VISPFDAWLILR--GLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVY---YPGFEDHPGHDIAAK------QMRMGGGMI 308 (391)
T ss_pred CCCcHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEE---CCCCCCCccHHHHHH------hCCCCCceE
Q ss_pred EEEecCCCCCCCCCcchhhHHHHHHHHHHhhcCCCcceEEEEeeeCcE----------------------------EEEE
Q psy2480 248 VFQFVPKDAGWGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETAAFGT----------------------------VLRI 299 (337)
Q Consensus 248 vFRy~P~~~~~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~~~G~----------------------------~LRf 299 (337)
.|.+.... +...+-+..+.++-....++|+ .+|+
T Consensus 309 s~~~~~~~------------------~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~ 370 (391)
T TIGR01328 309 TFELKGGF------------------AGAKKLLNNLKLIRLAVSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRL 370 (391)
T ss_pred EEEeCCCH------------------HHHHHHHHhCCcceEecCCCCCcccCcCCCccccccCCHHHHHhcCCCCCeEEE
Q ss_pred ecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 300 CPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 300 cplnp~T~edI~~~v~~L~~~~~il 324 (337)
|. -.||++.+++.|++..+.|
T Consensus 371 sv----GlE~~~dl~~dl~~al~~~ 391 (391)
T TIGR01328 371 SV----GLEDADDLIADLKQALDAL 391 (391)
T ss_pred Ee----CcCCHHHHHHHHHHHHhhC
No 162
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=36.46 E-value=46 Score=33.70 Aligned_cols=129 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEeecCCCCCCchhhhhhccCCccccccccceeEEEEeccCCCC
Q psy2480 40 WTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILSHGPVSGMGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAG 119 (337)
Q Consensus 40 W~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~ils~~~~~~~~~~d~~~~~~~~~~lfe~~~pvvvFqf~~~~~~ 119 (337)
|+.++ |.+....|++...+-++.+-+.|.+-|.|+-+-++--.+-.--++. .+.|.....++-|.|....
T Consensus 244 ~ll~r--gl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~------~~~~~g~ggl~sf~l~~~~-- 313 (386)
T PF01053_consen 244 WLLLR--GLRTLPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELA------KRQMSGGGGLLSFELKGGE-- 313 (386)
T ss_dssp HHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHH------HHHCSSCTSEEEEEESSHH--
T ss_pred HHHhc--CCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeee------eecccccCceeEEEeccch--
Q ss_pred CCccccccccccccCCCCCCCCcccccchhc-----cccc----cccccc-CCCCccccccccCc----chhhHHHHhhC
Q psy2480 120 WYTFYTFISSLLCSDAGWGPVPAYYDKLNSW-----LGFT----NIGDDL-STPLSMQTNEKAIA----LPVWTTLKSMG 185 (337)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~d~ln~W-----LG~~----~~p~V~-~~~ld~q~srr~~A----L~lW~~Lq~LG 185 (337)
.....++|.|+.+ ||-. ..|..+ |+.++++..++.+. +.+.+.|..
T Consensus 314 ------------------~~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGlEd-- 373 (386)
T PF01053_consen 314 ------------------EAARRFLDALKLFSIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGLED-- 373 (386)
T ss_dssp ------------------HHHHHHHHH-SSSEESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--SS---
T ss_pred ------------------hhhHhHHhhhhhHhhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEeccCC--
Q ss_pred hhhHHHHHHHHHH
Q psy2480 186 QTGIQDILTFNFS 198 (337)
Q Consensus 186 ~d~i~~~I~~t~~ 198 (337)
.+.+.+-++++++
T Consensus 374 ~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 374 PDDLIADLEQALE 386 (386)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
No 163
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=36.03 E-value=5e+02 Score=26.68 Aligned_cols=31 Identities=13% Similarity=0.066 Sum_probs=26.7
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
|.++||+|=-..|.+||+++++.|++.+..+
T Consensus 417 g~~l~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (453)
T PRK06943 417 GTTVYLMPPYVLDDDEIAWLAERTRATLDAT 447 (453)
T ss_pred CCEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 3469999877789999999999999988765
No 164
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=35.93 E-value=94 Score=29.92 Aligned_cols=44 Identities=20% Similarity=0.226 Sum_probs=36.2
Q ss_pred chhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEee
Q psy2480 36 ALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILS 79 (337)
Q Consensus 36 aLplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~ils 79 (337)
..-++.+++.+...|+-...++...+++.+.+.|.+.+++++.+
T Consensus 253 ~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 296 (376)
T TIGR01977 253 IAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYG 296 (376)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeC
Confidence 45567788888777777777778899999999999999999883
No 165
>PRK07046 aminotransferase; Validated
Probab=34.56 E-value=5.3e+02 Score=26.53 Aligned_cols=36 Identities=19% Similarity=0.462 Sum_probs=26.2
Q ss_pred ceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 284 SLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 284 ~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
++.+.. .+..+|+|| +-|++||+++++.+++.+..+
T Consensus 416 Gv~~~~---~~~~~~~~p--~~t~~did~~~~~~~~~l~~~ 451 (453)
T PRK07046 416 GVLITP---FHNMMLVCP--ATTAADVDRLVAAFDACLGEL 451 (453)
T ss_pred CCEEec---ccCcEEEeC--CCCHHHHHHHHHHHHHHHHHH
Confidence 355543 234678887 358999999999999887654
No 166
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=34.19 E-value=55 Score=32.04 Aligned_cols=34 Identities=9% Similarity=0.156 Sum_probs=29.0
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHhhhhccc
Q psy2480 295 TVLRICPFECSSGGDYESFLVCLDAQVYSGSQGL 328 (337)
Q Consensus 295 ~~LRfcplnp~T~edI~~~v~~L~~~~~il~~t~ 328 (337)
-+|||++-...|.+||+.+++.|++..+.+.+.+
T Consensus 322 ~~iRis~~~~~t~edid~l~~~L~~~~~~~~~~~ 355 (370)
T PRK05937 322 PFLRVNLHAFNTEDEVDILVSVLATYLEKYQKNV 355 (370)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 3799999888899999999999999888775543
No 167
>KOG1404|consensus
Probab=33.93 E-value=1.7e+02 Score=30.57 Aligned_cols=97 Identities=18% Similarity=0.189 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCC-CeEEeecCCCCCCcc-eeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhHH
Q psy2480 191 DILTFNFSLVESIRQKLSEYP-CLRILSHGPVSGLGL-KEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDKL 268 (337)
Q Consensus 191 ~~I~~t~~La~~~~e~L~~~p-~LeiL~~~~waglg~-v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~L 268 (337)
.+.|++-....+|.+.|.+.. ..+++.+.-+-|+-. +|+.++.. . -.|+.+
T Consensus 333 ~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~---~------------~~pp~~------------ 385 (442)
T KOG1404|consen 333 NLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKS---E------------PKPPAT------------ 385 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccC---C------------CCCcch------------
Confidence 556778888888888877766 577777655444322 27766522 0 112211
Q ss_pred HHHHHHHHhhcCCCcceEEEEeeeCcEEEEEecCCCCChhHHHHHHHH
Q psy2480 269 NSWLGQILQRDVPSVSLNLTETAAFGTVLRICPFECSSGGDYESFLVC 316 (337)
Q Consensus 269 NswLgqiL~~~~~~~~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~ 316 (337)
..+-.+...|-..++.|.-...+|.++|+.|=...|.+||+-+++.
T Consensus 386 --~~~~~i~~~cke~Gvlvg~g~i~G~vfriaPPlciT~edi~f~~~~ 431 (442)
T KOG1404|consen 386 --AEGAVIGEQCKELGVLVGKGGIHGNVFRIAPPLCITKEDIDFAVEY 431 (442)
T ss_pred --HHHHHHHHHHHHhCeeeecccccceEEEecCCeeccHHHHHHHHHH
Confidence 2234555566667788866667999999999888899999655553
No 168
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=33.46 E-value=2.6e+02 Score=26.66 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhHH
Q psy2480 189 IQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDKL 268 (337)
Q Consensus 189 i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~L 268 (337)
+.++.+.--+.++.+.+.+++. ++.+.. ...+.++|.-.+.. |
T Consensus 274 ~~~~~~~l~~~~~~l~~~L~~~-~~~~~~------------------------~~~~~~~~~~~~~~----------~-- 316 (363)
T PF00155_consen 274 LEELRERLRENRDLLREALEEI-GITVLP------------------------PEAGFFLWVRLDPN----------D-- 316 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TSEEEH------------------------HSBSSEEEEEESHH----------H--
T ss_pred cccchhhHHHHHHHHHHHHHHh-hhheee------------------------ccCccEEEEEcccc----------h--
Confidence 3445555556677788888777 888775 22444444321111 1
Q ss_pred HHHHHHHHhhcCCCcceEEEEeeeCc--EEEEEecCCCCChhHHHHHHHHH
Q psy2480 269 NSWLGQILQRDVPSVSLNLTETAAFG--TVLRICPFECSSGGDYESFLVCL 317 (337)
Q Consensus 269 NswLgqiL~~~~~~~~~~v~et~~~G--~~LRfcplnp~T~edI~~~v~~L 317 (337)
..-+.+.|.+... +.+......+ .++|+|. ...+.++++++++.|
T Consensus 317 ~~~l~~~L~~~~g---i~v~pg~~~~~~~~iRi~~-a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 317 AEELAQELLEEYG---ILVRPGSYFGVPGYIRISL-ASHSEEDLEEALERL 363 (363)
T ss_dssp HHHHHHHHHHHHT---EEEEEGGGGTSTTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC---EEEEecCCCCCCCEEEEEe-ccCCHHHHHHHHhhC
Confidence 1234455555533 6677655433 4999999 666899999999875
No 169
>PRK06149 hypothetical protein; Provisional
Probab=33.41 E-value=5.1e+02 Score=29.51 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=31.6
Q ss_pred ceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhh
Q psy2480 284 SLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYS 323 (337)
Q Consensus 284 ~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~i 323 (337)
++.+..+..++-+|||+|=-..|.+||+++++.|++.+..
T Consensus 931 Gvl~~~~g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 931 GVIMQPTGDHLNILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred CeEEeecCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 4666655445678999987777999999999999987653
No 170
>PRK07036 hypothetical protein; Provisional
Probab=33.06 E-value=5.6e+02 Score=26.40 Aligned_cols=31 Identities=10% Similarity=0.125 Sum_probs=26.2
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHhhhh
Q psy2480 295 TVLRICPFECSSGGDYESFLVCLDAQVYSGS 325 (337)
Q Consensus 295 ~~LRfcplnp~T~edI~~~v~~L~~~~~il~ 325 (337)
.++||+|=...|.+||+++++.+++.++.+.
T Consensus 424 ~~~~l~Ppl~it~~~id~~~~~l~~al~~~~ 454 (466)
T PRK07036 424 HLCVLSPPLIITRAQIDEIVAILRAAIEETA 454 (466)
T ss_pred CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 4688888777799999999999998887763
No 171
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=32.73 E-value=2.9e+02 Score=28.40 Aligned_cols=37 Identities=11% Similarity=0.021 Sum_probs=28.4
Q ss_pred ceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHH
Q psy2480 284 SLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQ 320 (337)
Q Consensus 284 ~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~ 320 (337)
++.+.....++.+|||+|--..|.+||+++++.+++.
T Consensus 405 Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~~~~l~~~ 441 (442)
T TIGR03372 405 NILVAGTLNNAKSIRIEPPLTITIEQCALVIKAAKDA 441 (442)
T ss_pred CcEEeecCCCCCEEEEECCcccCHHHHHHHHHHHHHh
Confidence 3555433335579999998888999999999999874
No 172
>PLN02624 ornithine-delta-aminotransferase
Probab=32.62 E-value=5.7e+02 Score=26.34 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=27.6
Q ss_pred ceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhh
Q psy2480 284 SLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYS 323 (337)
Q Consensus 284 ~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~i 323 (337)
++.+... ++.+|||+|--..|.+||+++++.|++.+..
T Consensus 407 GV~v~p~--~~~~lR~~p~l~~t~e~id~~l~~L~~~l~~ 444 (474)
T PLN02624 407 GLLAKPT--HDTIIRLAPPLSISEDELQECSKALSDVLEH 444 (474)
T ss_pred CeEEecC--CCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 3555432 4579999984445899999999999876543
No 173
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=32.34 E-value=2.3e+02 Score=27.99 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=23.2
Q ss_pred CcEEEEEecCCCCChhHHHHHHHHHHHHH
Q psy2480 293 FGTVLRICPFECSSGGDYESFLVCLDAQV 321 (337)
Q Consensus 293 ~G~~LRfcplnp~T~edI~~~v~~L~~~~ 321 (337)
++.+|||+|--..|.+||+++++.|++.+
T Consensus 367 ~~~~iRi~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 367 HETVIRFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred CCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence 34699999944459999999999998753
No 174
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=32.08 E-value=3.3e+02 Score=27.12 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=26.0
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHhhhh
Q psy2480 295 TVLRICPFECSSGGDYESFLVCLDAQVYSGS 325 (337)
Q Consensus 295 ~~LRfcplnp~T~edI~~~v~~L~~~~~il~ 325 (337)
..+|+|.--.-|.|||+++++.|++.+..+.
T Consensus 354 ~~iR~~~~~~~t~eei~~~~~~l~~~~~~~~ 384 (392)
T PLN03227 354 PCLRVVANASHTREDIDKLLTVLGEAVEAIL 384 (392)
T ss_pred ceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5788887776799999999999999887654
No 175
>PRK07908 hypothetical protein; Provisional
Probab=31.69 E-value=3.4e+02 Score=26.04 Aligned_cols=87 Identities=9% Similarity=0.061 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhHH
Q psy2480 189 IQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDKL 268 (337)
Q Consensus 189 i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~L 268 (337)
+.++.+.-.+.++.+.+.|++. ++++.. +.....+.++.. + . +.
T Consensus 255 ~~~~~~~~~~~r~~l~~~L~~~-~~~~~~-----------------------p~~g~~~~~~~~-~--~--------~~- 298 (349)
T PRK07908 255 AAADAARLAADRAEMVAGLRAV-GARVVD-----------------------PAAAPFVLVRVP-D--A--------EL- 298 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CcEecc-----------------------CCCceEEEEECC-c--H--------HH-
Confidence 3344555566677788888877 677664 233455555542 1 1 11
Q ss_pred HHHHHHHHhhcCCCcceEEEEeee-C---cEEEEEecCCCCChhHHHHHHHHHHHHH
Q psy2480 269 NSWLGQILQRDVPSVSLNLTETAA-F---GTVLRICPFECSSGGDYESFLVCLDAQV 321 (337)
Q Consensus 269 NswLgqiL~~~~~~~~~~v~et~~-~---G~~LRfcplnp~T~edI~~~v~~L~~~~ 321 (337)
+.+.+.+. ++.+..... . .-++|+|.- +.++++.+++.|++..
T Consensus 299 ---~~~~l~~~----gI~v~~g~~f~~~~~~~vRis~~---~~~~~~~l~~al~~~~ 345 (349)
T PRK07908 299 ---LRKRLRER----GIAVRRGDTFPGLDPDYLRLAVR---PRAEVPVLVQALAEIL 345 (349)
T ss_pred ---HHHHHHhC----CEEEEECCCCCCCCCCeEEEEeC---CCccHHHHHHHHHHHH
Confidence 11222221 344554332 1 259999983 6778899999888753
No 176
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=31.37 E-value=1.1e+02 Score=31.21 Aligned_cols=64 Identities=22% Similarity=0.208 Sum_probs=50.6
Q ss_pred hhchhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEeecCCCCCCchhhhhhccCCccccccccceeEEEEe
Q psy2480 34 AIALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILSHGPVSGMGLKEVTSQYLPVQTILESVQSCVVFQF 113 (337)
Q Consensus 34 l~aLplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~ils~~~~~~~~~~d~~~~~~~~~~lfe~~~pvvvFqf 113 (337)
+.++-+=.|++++-.-|+.+.-++.-+|.+.++++|+++++++|.+.++ +.-.|++.|..
T Consensus 281 ~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~--------------------~~r~~~vsF~v 340 (405)
T COG0520 281 AGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPD--------------------ADRGGIVSFNV 340 (405)
T ss_pred HHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc--------------------ccCceEEEEEe
Confidence 3444466788888888888888888999999999999999999995441 24577888888
Q ss_pred ccCC
Q psy2480 114 VPKD 117 (337)
Q Consensus 114 ~~~~ 117 (337)
.+..
T Consensus 341 ~~~~ 344 (405)
T COG0520 341 KGIH 344 (405)
T ss_pred CCCC
Confidence 8874
No 177
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=30.72 E-value=4.5e+02 Score=25.89 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=26.8
Q ss_pred ceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHH
Q psy2480 284 SLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQV 321 (337)
Q Consensus 284 ~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~ 321 (337)
++.+.. .++..|||+|--..|.+||+++++.|++.+
T Consensus 365 Gv~v~~--~~~~~lRi~p~l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 365 GLLAKP--THGNIIRLAPPLVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred CEEEEe--cCCCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence 355533 234689999965568999999999998754
No 178
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=30.18 E-value=4.3e+02 Score=26.43 Aligned_cols=117 Identities=19% Similarity=0.240 Sum_probs=0.0
Q ss_pred hHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcce---eeeccccCccccccccceeEEEEecCC
Q psy2480 178 WTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLK---EVTSQYLPVQTILESVQSCVVFQFVPK 254 (337)
Q Consensus 178 W~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v---~~~~~~~~~~~~~~~~lsvVvFRy~P~ 254 (337)
|..++.|-+ +..+++...+.++.+.+.|+++|.++-|- +||+... ++.++ ++.---+++.|.++
T Consensus 239 ~l~~rgl~t--l~~R~~~~~~na~~la~~L~~~p~v~~V~---yp~l~~~p~~~~~~~------~~~g~g~~~s~~~~-- 305 (386)
T PRK08045 239 YLLLRGLRT--LVPRMELAQRNAQAIVKYLQTQPLVKKLY---HPSLPENQGHEIAAR------QQKGFGAMLSFELD-- 305 (386)
T ss_pred HHHHhhhcc--HHHHHHHHHHHHHHHHHHHHcCCCEeEEE---CCCCCCCcCHHHHHH------hCCCCCceEEEEec--
Q ss_pred CCCCCCCcchhhHHHHHHHHHHhhcCCCcceEEEEeeeCc----------------------------EEEEEecCCCCC
Q psy2480 255 DAGWGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETAAFG----------------------------TVLRICPFECSS 306 (337)
Q Consensus 255 ~~~~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~~~G----------------------------~~LRfcplnp~T 306 (337)
+.. +...+-+..+.++-..+.++| -.+|+|. -
T Consensus 306 ~~~----------------~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~sv----G 365 (386)
T PRK08045 306 GDE----------------QTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRIST----G 365 (386)
T ss_pred CcH----------------HHHHHHHHhccceeEeccCCCCceeEeCCCCcccccCCHHHHHhcCCCCCeEEEEe----C
Q ss_pred hhHHHHHHHHHHHHHhhhhcc
Q psy2480 307 GGDYESFLVCLDAQVYSGSQG 327 (337)
Q Consensus 307 ~edI~~~v~~L~~~~~il~~t 327 (337)
.||++.+++-|++.++..+++
T Consensus 366 lE~~~dl~~dl~~al~~~~~~ 386 (386)
T PRK08045 366 IEDGEDLIADLENGFRAANKG 386 (386)
T ss_pred cCCHHHHHHHHHHHHHHhhcC
No 179
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=30.10 E-value=1.5e+02 Score=28.91 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=33.1
Q ss_pred hchhhHHHHHhcCchh--------------HHHHHHHHHHHHHHHHHhhccCCceEEee
Q psy2480 35 IALPVWTTLKSMGQTG--------------IQDILTFNFSLVESVRQKLSEYPCLRILS 79 (337)
Q Consensus 35 ~aLplW~alQ~Lg~~~--------------I~~ri~~Af~ls~~l~~~L~~~~~I~ils 79 (337)
..+.++.|++++-..+ +-+..++..++++.+++.|.+++++++.+
T Consensus 262 ~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~ 320 (397)
T TIGR01976 262 LLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYG 320 (397)
T ss_pred HHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence 3455778887763332 33445677889999999999999999984
No 180
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=30.04 E-value=5.2e+02 Score=25.02 Aligned_cols=85 Identities=15% Similarity=0.192 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhH
Q psy2480 188 GIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDK 267 (337)
Q Consensus 188 ~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~ 267 (337)
.+.+.++...+.++++.+.|++.++++.+. ++..+-+.+++. + . +
T Consensus 263 ~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-----------------------ps~~nfi~~~~~--~-~--------~- 307 (351)
T PRK01688 263 AMRERVAEINANRQWLIAALKEIPCVEQVF-----------------------DSETNYILARFT--A-S--------S- 307 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCeEC-----------------------CCCCcEEEEEcC--C-H--------H-
Confidence 445556666677888989998888775332 233444555552 1 1 1
Q ss_pred HHHHHHHHHhhcCCCcceEEEEeee-Cc--EEEEEecCCCCChhHHHHHHHHH
Q psy2480 268 LNSWLGQILQRDVPSVSLNLTETAA-FG--TVLRICPFECSSGGDYESFLVCL 317 (337)
Q Consensus 268 LNswLgqiL~~~~~~~~~~v~et~~-~G--~~LRfcplnp~T~edI~~~v~~L 317 (337)
.+.+.|.+. ++.|..... .| -++|++.- +.++++.+++.|
T Consensus 308 ---~l~~~L~~~----gi~vr~~~~~~~~~~~iRis~~---~~~e~~~l~~al 350 (351)
T PRK01688 308 ---AVFKSLWDQ----GIILRDQNKQPGLSNCLRITIG---TREECQRVIDAL 350 (351)
T ss_pred ---HHHHHHHHC----CeEEEECCCcCCCCCeEEEeCC---CHHHHHHHHHhh
Confidence 223333322 244443321 12 48999976 568999998876
No 181
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=29.94 E-value=1.4e+02 Score=30.08 Aligned_cols=70 Identities=9% Similarity=0.096 Sum_probs=47.8
Q ss_pred hhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEeecCCCCCCchhhhhhccCCccccccccceeEEEEecc
Q psy2480 38 PVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILSHGPVSGMGLKEVTSQYLPVQTILESVQSCVVFQFVP 115 (337)
Q Consensus 38 plW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~ils~~~~~~~~~~d~~~~~~~~~~lfe~~~pvvvFqf~~ 115 (337)
--|++++ |.+.+..|++.-.+.++.+-+.|++.|.|+-+-++--.+..--++. .+.|.....+|-|.+++
T Consensus 248 ~a~l~l~--~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~------~~~~~g~g~~~sf~~~~ 317 (398)
T PRK08249 248 SAYLILR--GMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIA------KAQMRGFGGILSFVLKG 317 (398)
T ss_pred HHHHHHh--CcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHH------HhhCCCCCceEEEEEcC
Confidence 4566665 5678899999999999999999999999986655311111112223 22345567888899974
No 182
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=28.83 E-value=96 Score=31.36 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=31.0
Q ss_pred ceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 284 SLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 284 ~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
++.+.....++..|||+|--..|.+||+++++.|++.+..+
T Consensus 377 Gv~~~~~~~~~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~~ 417 (425)
T PRK09264 377 GLIIETSGPEDEVVKLLPPLTIDEEELEEGLDILEEAVAEV 417 (425)
T ss_pred CCEEeccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35554444455799999755568999999999999988765
No 183
>KOG1403|consensus
Probab=28.23 E-value=2.4e+02 Score=28.67 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CeEEeecCCCCCCcce-eeeccccCccccccccceeEEEEecCCCCCCCCCcchhhHHH
Q psy2480 192 ILTFNFSLVESIRQKLSEYP-CLRILSHGPVSGLGLK-EVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDKLN 269 (337)
Q Consensus 192 ~I~~t~~La~~~~e~L~~~p-~LeiL~~~~waglg~v-~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~LN 269 (337)
..+++-+.-+.+.++|.+.. ..+++.+..+.|++.- |.++... .-.|+ .+.-
T Consensus 333 Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~~---------------tRtP~-----------tk~A 386 (452)
T KOG1403|consen 333 LQEHAQQVGEKLEVLLRRLKQKHECIGDVRGVGLFIGIDLVKDRK---------------TRTPD-----------TKEA 386 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccceeccccceEEEeeeeecccc---------------cCCCc-----------HHHH
Confidence 34455556666666655544 4566665555555433 5555411 11111 2335
Q ss_pred HHHHHHHhhcCCCcceEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHHhhhhcccc
Q psy2480 270 SWLGQILQRDVPSVSLNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQVYSGSQGLF 329 (337)
Q Consensus 270 swLgqiL~~~~~~~~~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~~il~~t~~ 329 (337)
.|+.-.|.+... +.+..-.-+.-+|+|-|=.+-+++++++++..|++.+..|+..+-
T Consensus 387 ~~~v~rlke~y~---VLlsaDGPh~NilKiKPPmCFneena~e~v~~ld~iLT~mee~~~ 443 (452)
T KOG1403|consen 387 HWVVNRLKELYR---VLLSADGPHRNILKIKPPMCFNEENADEFVLGLDEILTVMEERLA 443 (452)
T ss_pred HHHHHHHHHhhh---EEEecCCCCCceeecCCCcccChhhHHHHHHHHHHHHHHHHHHHh
Confidence 688888877776 444333347779999887777999999999999999887765543
No 184
>PRK07582 cystathionine gamma-lyase; Validated
Probab=28.20 E-value=3.7e+02 Score=26.56 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=0.0
Q ss_pred hHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCC
Q psy2480 178 WTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAG 257 (337)
Q Consensus 178 W~~Lq~LG~d~i~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~ 257 (337)
|..++.+. .+-.+++...+.++.+.+.|+++|.++-|..+.-++-...++.++ +|.-.-++|.|.+. ..
T Consensus 234 ~l~~r~l~--tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~------~~~~~gg~~s~~~~---~~ 302 (366)
T PRK07582 234 WLAHRSLG--TLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAAR------QMRRFGGLVSFELA---DA 302 (366)
T ss_pred HHHHhccc--cHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHh------hCCCCcceEEEEeC---CH
Q ss_pred CCCCcchhhHHHHHHHHHHhhcCCCcceEEEEeeeCc-----------------EEEEEecCCCCChhHHHHHHHHHHH
Q psy2480 258 WGPVPAYYDKLNSWLGQILQRDVPSVSLNLTETAAFG-----------------TVLRICPFECSSGGDYESFLVCLDA 319 (337)
Q Consensus 258 ~e~~~~y~D~LNswLgqiL~~~~~~~~~~v~et~~~G-----------------~~LRfcplnp~T~edI~~~v~~L~~ 319 (337)
+...+-....++....+.++| ..||+|.---..+|-|+.+.+.|++
T Consensus 303 ----------------~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~liR~svGlE~~~dli~dl~~al~~ 365 (366)
T PRK07582 303 ----------------AAAERFVAASRLVVAATSFGGVHTSADRRARWGDAVPEGFVRLSCGIEDTDDLVADLERALDA 365 (366)
T ss_pred ----------------HHHHHHHHhCCcceecccCCCccchhhhHHHcCCCCCCCeEEEEeccCCHHHHHHHHHHHHhh
No 185
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=27.49 E-value=3.2e+02 Score=28.94 Aligned_cols=99 Identities=7% Similarity=0.010 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCeEEeecCCCCCCcceeeeccccCccccccccceeEEEEecCCCCCCCCCcchhhHHH
Q psy2480 190 QDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGPVPAYYDKLN 269 (337)
Q Consensus 190 ~~~I~~t~~La~~~~e~L~~~p~LeiL~~~~waglg~v~~~~~~~~~~~~~~~~lsvVvFRy~P~~~~~e~~~~y~D~LN 269 (337)
.++.++..+.++.|.+.+.+. +++++.. ....++|.....+.+. .
T Consensus 338 ~~y~~~l~~Na~~La~~L~~~-G~~vv~g----------------------gTdshIV~V~lg~~~~------------~ 382 (493)
T PRK13580 338 QKYAQQVVDNARALAEGFLKR-GARLVTG----------------------GTDNHLVLIDVTSFGL------------T 382 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCccCC----------------------CCCCCEEEEEeCCHHH------------H
Confidence 446677778888888887654 6676631 1233555554432211 1
Q ss_pred H-HHHHHHhhcCCCcceEEEEeeeCc----EEEEEecCCCC----ChhHHHHHHHHHHHHHhh
Q psy2480 270 S-WLGQILQRDVPSVSLNLTETAAFG----TVLRICPFECS----SGGDYESFLVCLDAQVYS 323 (337)
Q Consensus 270 s-wLgqiL~~~~~~~~~~v~et~~~G----~~LRfcplnp~----T~edI~~~v~~L~~~~~i 323 (337)
. -+.+.|.+.+=-.......++-.| ..||+++-... +++||+.+++.|.+.+..
T Consensus 383 g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~ 445 (493)
T PRK13580 383 GRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSN 445 (493)
T ss_pred HHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHh
Confidence 1 122344443322222223344333 58999977632 699999999999876653
No 186
>PRK08297 L-lysine aminotransferase; Provisional
Probab=27.26 E-value=6.9e+02 Score=25.56 Aligned_cols=30 Identities=10% Similarity=0.092 Sum_probs=25.6
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 295 TVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 295 ~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
.++||+|--..|.+||+++++.|++.+..+
T Consensus 413 ~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 413 RSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred CeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 579999876679999999999999887654
No 187
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=27.02 E-value=6e+02 Score=24.77 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCCCeEE
Q psy2480 187 TGIQDILTFNFSLVESIRQKLSEYPCLRI 215 (337)
Q Consensus 187 d~i~~~I~~t~~La~~~~e~L~~~p~Lei 215 (337)
+.+.+.++...+-++.+.+.+++.+++++
T Consensus 281 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 309 (374)
T PRK02610 281 QELLAAIPEILQERDRLYQALQELPQLRV 309 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcEe
Confidence 45566777777777788888888777664
No 188
>PRK07482 hypothetical protein; Provisional
Probab=26.98 E-value=7.1e+02 Score=25.61 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=27.2
Q ss_pred CcEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 293 FGTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 293 ~G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
+|.++||+|--..|.+||+++++.+++.+..+
T Consensus 424 ~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 424 HGDILGFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46789998777779999999999999988765
No 189
>PHA03075 glutaredoxin-like protein; Provisional
Probab=26.86 E-value=65 Score=27.96 Aligned_cols=20 Identities=10% Similarity=0.379 Sum_probs=15.0
Q ss_pred cccccc--cceeEEEEeccCCC
Q psy2480 99 QTILES--VQSCVVFQFVPKDA 118 (337)
Q Consensus 99 ~~lfe~--~~pvvvFqf~~~~~ 118 (337)
|.+||. ..-|.+|||+|++.
T Consensus 60 nn~~~~lgne~v~lfKydp~t~ 81 (123)
T PHA03075 60 NNFFKHLGNEYVSLFKYDPETK 81 (123)
T ss_pred HHHHHhhcccEEEEEEEcCCCC
Confidence 445555 57799999999974
No 190
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=26.86 E-value=6.9e+02 Score=25.47 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=25.0
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHhh
Q psy2480 295 TVLRICPFECSSGGDYESFLVCLDAQVYS 323 (337)
Q Consensus 295 ~~LRfcplnp~T~edI~~~v~~L~~~~~i 323 (337)
.+|||+|-...|.+||+++++.+++.+..
T Consensus 411 ~~lr~~p~l~~t~~~id~~~~~l~~~l~~ 439 (441)
T PRK05769 411 SAIRIIPPLIITEEEADIGLEILEEAIKE 439 (441)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 68999997667999999999999987653
No 191
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=26.44 E-value=6.1e+02 Score=24.68 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.5
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHH
Q psy2480 295 TVLRICPFECSSGGDYESFLVCLDAQ 320 (337)
Q Consensus 295 ~~LRfcplnp~T~edI~~~v~~L~~~ 320 (337)
.+|||+|-...+.+||+++++.|++.
T Consensus 349 ~~lR~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 349 NVIRLLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred CEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 68999997677899999999999764
No 192
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=26.18 E-value=3.5e+02 Score=27.61 Aligned_cols=30 Identities=17% Similarity=0.090 Sum_probs=26.0
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHhh
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVYS 323 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~i 323 (337)
|.+|||.|=-..|.+||+++++.|++.+..
T Consensus 396 g~~l~~~Ppl~it~~ei~~~~~~l~~~l~~ 425 (429)
T PRK06173 396 GKLVYIMPPFIISPDELSQLTSGLLRVLKQ 425 (429)
T ss_pred CCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence 458999988778999999999999988754
No 193
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=25.94 E-value=6.9e+02 Score=25.50 Aligned_cols=29 Identities=10% Similarity=0.159 Sum_probs=25.2
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHh
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVY 322 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~ 322 (337)
|.+|||+|--..|.+||+++++.|++.+.
T Consensus 394 g~~i~~~Ppl~it~~ei~~~~~~l~~~l~ 422 (428)
T PRK07986 394 GKLIYLMPPYIILPEQLQRLTAAVNRAVQ 422 (428)
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 56899998877899999999999998764
No 194
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=25.48 E-value=5.9e+02 Score=24.62 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=21.5
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHH
Q psy2480 295 TVLRICPFECSSGGDYESFLVCLDAQ 320 (337)
Q Consensus 295 ~~LRfcplnp~T~edI~~~v~~L~~~ 320 (337)
-+|||+|--..+.++|+++++.|++.
T Consensus 351 ~~lRi~p~~~~~~~~i~~~i~~l~~~ 376 (377)
T PRK02936 351 NVIRLLPPLVVTKEELDQAVYLLKKV 376 (377)
T ss_pred CEEEEECCcccCHHHHHHHHHHHHHh
Confidence 58999985456899999999999764
No 195
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.35 E-value=1.1e+02 Score=31.54 Aligned_cols=134 Identities=10% Similarity=0.049 Sum_probs=76.5
Q ss_pred hHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEeecCCCCCC-chhhhhhccCCccccc-cccceeEEEEeccC
Q psy2480 39 VWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILSHGPVSGM-GLKEVTSQYLPVQTIL-ESVQSCVVFQFVPK 116 (337)
Q Consensus 39 lW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~ils~~~~~~~-~~~d~~~~~~~~~~lf-e~~~pvvvFqf~~~ 116 (337)
-|+.+ -|-+..-.|++...+.++.|-+.|.+.|.|+=+-++ +-.. .--++. .+.+ .....++-|.+.+.
T Consensus 286 a~l~~--rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yP-gl~s~p~~~~~------~~~~~~g~gg~~sf~l~~~ 356 (436)
T PRK07812 286 AFLIA--QGLETLSLRIERHVANAQRVAEFLEARDEVASVNYA-GLPSSPWYERA------KRLAPKGTGAVLSFELAGG 356 (436)
T ss_pred HHHHh--cCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECC-CCCCCccHHHH------HHhCcCCCceEEEEEecCC
Confidence 35444 477889999999999999999999999999766443 2211 112322 1222 34578888999743
Q ss_pred CCCCCccccccccccccCCCCCCCCcccccchhccccccc---------cccc-CCCCccccccccC----cchhhHHHH
Q psy2480 117 DAGWYTFYTFISSLLCSDAGWGPVPAYYDKLNSWLGFTNI---------GDDL-STPLSMQTNEKAI----ALPVWTTLK 182 (337)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ln~WLG~~~~---------p~V~-~~~ld~q~srr~~----AL~lW~~Lq 182 (337)
.. ....+.|.|..+-+-+++ |..+ |+.+.++..++.+ -+.+.+.|.
T Consensus 357 ~~--------------------~~~~f~~~l~l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~~liRlSvGlE 416 (436)
T PRK07812 357 VE--------------------AGKAFVNALTLHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTPGLVRLAVGIE 416 (436)
T ss_pred HH--------------------HHHHHHHhCCcceEecccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCeEEEEeccC
Confidence 11 124455655555443333 3333 4555544433333 223322222
Q ss_pred hhChhhHHHHHHHHHHHHHHH
Q psy2480 183 SMGQTGIQDILTFNFSLVESI 203 (337)
Q Consensus 183 ~LG~d~i~~~I~~t~~La~~~ 203 (337)
. .+.+.+-++++++.++.|
T Consensus 417 d--~~dli~dl~~Al~~~~~~ 435 (436)
T PRK07812 417 G--IDDILADLEAGFAAAKAF 435 (436)
T ss_pred C--HHHHHHHHHHHHHhhhcc
Confidence 1 356677777777766544
No 196
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=25.08 E-value=7.8e+02 Score=25.43 Aligned_cols=31 Identities=10% Similarity=0.064 Sum_probs=27.4
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
|.++||+|--..|.+||+++++.+++.++.+
T Consensus 417 g~~i~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 417 GSVVYFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred CCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 4589999877779999999999999999887
No 197
>PRK06917 hypothetical protein; Provisional
Probab=24.98 E-value=7.6e+02 Score=25.28 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=27.3
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
|-++||+|=-..|.+||+++++.+++.+..+
T Consensus 408 ~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 438 (447)
T PRK06917 408 GDAVIIAPPMTITYSELDELLSIFAKSVEEM 438 (447)
T ss_pred CCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 5699999877779999999999999988776
No 198
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=24.96 E-value=7.2e+02 Score=25.04 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=28.1
Q ss_pred eEEEEeeeCcEEEEEecCCCCChhHHHHHHHHHHHHH
Q psy2480 285 LNLTETAAFGTVLRICPFECSSGGDYESFLVCLDAQV 321 (337)
Q Consensus 285 ~~v~et~~~G~~LRfcplnp~T~edI~~~v~~L~~~~ 321 (337)
+.+......+-+|||+|--..+.++|+++++.|++.+
T Consensus 383 v~i~~~g~~~~~irl~P~l~i~~~ei~~~~~~l~~~l 419 (421)
T PRK09792 383 LLLLTCGAYGNVIRFLYPLTIPDAQFDAAMKILQDAL 419 (421)
T ss_pred cEEeecCCCCCEEEEeCCCcCCHHHHHHHHHHHHHHH
Confidence 4453222345799999877789999999999998765
No 199
>PRK07682 hypothetical protein; Validated
Probab=24.59 E-value=6.5e+02 Score=24.36 Aligned_cols=28 Identities=11% Similarity=-0.030 Sum_probs=22.4
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHhh
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVYS 323 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~i 323 (337)
.-++|+|.-. +.+++++.++.|.+.++.
T Consensus 349 ~~~iRis~~~--~~~~l~~~l~~l~~~l~~ 376 (378)
T PRK07682 349 EGFIRCSYAT--SLEQLQEAMKRMKRFVEN 376 (378)
T ss_pred CCeEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence 3699999875 478999999999886653
No 200
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=23.96 E-value=7.7e+02 Score=24.99 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=24.4
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHh
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVY 322 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~ 322 (337)
|.++||+|--..|.+||+++++.+++.+.
T Consensus 397 ~~~l~~~ppl~~t~~~id~~~~~l~~~l~ 425 (427)
T TIGR00508 397 GKLIYVMPPYIITTEQLQKLTAALIEALH 425 (427)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 34799988777799999999999998764
No 201
>PF10206 WRW: Mitochondrial F1F0-ATP synthase, subunit f; InterPro: IPR019344 This entry represents small proteins of approximately 110 amino acids, which are highly conserved from nematodes to humans. Some have been annotated in Swiss-Prot as being the f subunit of mitochondrial F1F0-ATP synthase but this could not be confirmed. The sequence has a well-conserved WRW motif. The exact function of the protein is not known.
Probab=23.58 E-value=57 Score=27.59 Aligned_cols=54 Identities=26% Similarity=0.445 Sum_probs=38.5
Q ss_pred cccccccceeeeeeecCCCCCccccccHHHHhhchhhHHHHHhcCchhHHHHHHHHHHHHHH
Q psy2480 3 ALHGRYATAYCLFTNIGDDLSTPLSMQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVES 64 (337)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~aLplW~alQ~Lg~~~I~~ri~~Af~ls~~ 64 (337)
+.||-|.-+. --| --.|||. .=||.-||-|++-+-..-.+|...+..|+.--+.
T Consensus 13 ~vhGpy~p~r----yYG-k~Dt~l~---dVKLgELpsW~~rRd~sP~~~~~a~sR~~wry~~ 66 (104)
T PF10206_consen 13 KVHGPYDPAR----YYG-KKDTPLM---DVKLGELPSWLSRRDKSPSGIAGAFSRGYWRYQH 66 (104)
T ss_pred cccCCCCchh----hcC-CCCCchh---heecchhHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 4566554332 223 2345543 3599999999999999999999999999876544
No 202
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=22.74 E-value=2.1e+02 Score=27.66 Aligned_cols=29 Identities=7% Similarity=-0.052 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCceEEee
Q psy2480 51 IQDILTFNFSLVESVRQKLSEYPCLRILS 79 (337)
Q Consensus 51 I~~ri~~Af~ls~~l~~~L~~~~~I~ils 79 (337)
-.+++......++.+.+.|++++++++.+
T Consensus 259 ~~~~~~~~~~~~~~l~~~L~~l~g~~v~~ 287 (361)
T cd06452 259 RVKRWDEEVEKARWFVAELEKIEGIKQLG 287 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEC
Confidence 35667777777899999999999999983
No 203
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=22.66 E-value=6.7e+02 Score=23.84 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=19.5
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHHH
Q psy2480 295 TVLRICPFECSSGGDYESFLVCLDAQV 321 (337)
Q Consensus 295 ~~LRfcplnp~T~edI~~~v~~L~~~~ 321 (337)
.++|+|.- +.++++.+++.|++..
T Consensus 328 ~~iRis~~---~~~~~~~~~~~L~~~~ 351 (353)
T PRK05387 328 QFLRITIG---TDEEMEALVDALKEIL 351 (353)
T ss_pred CeEEEEeC---CHHHHHHHHHHHHHHh
Confidence 48999975 5689999999998754
No 204
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=22.51 E-value=1.3e+02 Score=29.72 Aligned_cols=48 Identities=15% Similarity=0.260 Sum_probs=35.9
Q ss_pred HHhhchhhHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccCCceEEee
Q psy2480 32 EKAIALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILS 79 (337)
Q Consensus 32 ~kl~aLplW~alQ~Lg~~~I~~ri~~Af~ls~~l~~~L~~~~~I~ils 79 (337)
+-...+.++.|+.++-.-|+-+..++.-.+.+.+.+.|++++++++.+
T Consensus 280 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~ 327 (406)
T PRK09295 280 NTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYG 327 (406)
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence 344567788888777555555555566678999999999999999983
No 205
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=21.71 E-value=8.4e+02 Score=24.59 Aligned_cols=31 Identities=19% Similarity=0.115 Sum_probs=26.5
Q ss_pred cEEEEEecCCCCChhHHHHHHHHHHHHHhhh
Q psy2480 294 GTVLRICPFECSSGGDYESFLVCLDAQVYSG 324 (337)
Q Consensus 294 G~~LRfcplnp~T~edI~~~v~~L~~~~~il 324 (337)
.-.|||+|--..|.+||+++++.+++.+..+
T Consensus 374 ~~~lRl~Ppl~it~eeid~~l~~l~~~l~~~ 404 (408)
T PRK04612 374 PDVLRFVPALNLTDAELADGLARLRLALADY 404 (408)
T ss_pred CCEEEEcCCccCCHHHHHHHHHHHHHHHHHH
Confidence 3689999877779999999999999887653
No 206
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=21.24 E-value=53 Score=28.10 Aligned_cols=27 Identities=22% Similarity=0.555 Sum_probs=22.1
Q ss_pred CccccccccceeEEEEeccCCCCCCcc
Q psy2480 97 PVQTILESVQSCVVFQFVPKDAGWYTF 123 (337)
Q Consensus 97 ~~~~lfe~~~pvvvFqf~~~~~~~~~~ 123 (337)
.+..|.+.++-|+||+|++++.+|+.+
T Consensus 18 ~I~~Il~~a~~v~vY~f~~~~~~W~K~ 44 (122)
T PF06058_consen 18 SIESILDTASHVVVYKFDHETNEWEKT 44 (122)
T ss_dssp TEEEEEEEEEEEEEEEEETTTTEEEEE
T ss_pred hHHHHHhhCCeEEEEeecCCCCcEeec
Confidence 345566889999999999999888665
No 207
>PF06528 Phage_P2_GpE: Phage P2 GpE; InterPro: IPR009493 This entry is represented by Burkholderia phage phiE202, Gp27. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins which are closely related to the GpE tail protein from Phage P2.
Probab=20.04 E-value=61 Score=22.75 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=24.4
Q ss_pred eEEEEecCCCCCCCCCcchhhHHHHHHHHHHhhcCC
Q psy2480 246 CVVFQFVPKDAGWGPVPAYYDKLNSWLGQILQRDVP 281 (337)
Q Consensus 246 vVvFRy~P~~~~~e~~~~y~D~LNswLgqiL~~~~~ 281 (337)
.++|.+.|++.. .=.++.|..|.-+.++|.+.
T Consensus 5 A~~FhW~Pse~~----~m~l~El~~Wre~A~~R~~a 36 (39)
T PF06528_consen 5 AWVFHWPPSEMD----AMSLDELMDWRERARRRSGA 36 (39)
T ss_pred eeecCCCHHHHh----cCCHHHHHHHHHHHHHHhcc
Confidence 468898887654 33478999999998888765
Done!