RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2480
(337 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 3e-06
Identities = 43/215 (20%), Positives = 59/215 (27%), Gaps = 101/215 (46%)
Query: 60 SLVESVRQKLSEYPCLRI-LSHGP----VSG-----MGLK-------------------- 89
V L + I L +G VSG GL
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 90 ----EVTSQYLPVQTILESVQSCVVFQFVPKDAGWYTFYTFISSLLCSDAGWGPVPAYYD 145
+ ++++LPV P F S LL VPA D
Sbjct: 411 ERKLKFSNRFLPV--------------ASP----------FHSHLL--------VPAS-D 437
Query: 146 KLNSWLGFTNI---GDDLSTPLSMQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVES 202
+N L N+ D+ +PV+ T G D+ + S+ E
Sbjct: 438 LINKDLVKNNVSFNAKDI-------------QIPVYDT-----FDG-SDLRVLSGSISER 478
Query: 203 IRQKLSEYPC----------LRILSHGP--VSGLG 225
I + P IL GP SGLG
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLG 513
Score = 37.7 bits (87), Expect = 0.006
Identities = 60/428 (14%), Positives = 119/428 (27%), Gaps = 162/428 (37%)
Query: 4 LHGRYATAYC-----LFTNIGDDLSTPLSMQTNEKAIALPVWTTLKSMGQTGIQDILTFN 58
L Y T Y L + LS L T + G+ +IL +
Sbjct: 173 LRDLYQT-YHVLVGDLIKFSAETLS-ELIRTTLDAEKVFT----------QGL-NILEW- 218
Query: 59 FSLVESVRQKLSEYPCLRILSHGPVSGMGLKEVTSQYLPVQTILESVQ---SCVVFQFVP 115
L +Y L P+S P+ +++ + + F P
Sbjct: 219 --LENPSNTPDKDY-----LLSIPIS-----------CPLIGVIQLAHYVVTAKLLGFTP 260
Query: 116 KDAGWYTFYTFISSLLCSDAG------------WGPVPAYYDKLNS------WLGF---- 153
+ +++ G W +++ + ++G
Sbjct: 261 GE-----LRSYLKGATGHSQGLVTAVAIAETDSW---ESFFVSVRKAITVLFFIGVRCYE 312
Query: 154 ---------------TNIGDDLSTP------LSMQTNEKAIALPVWTTLKSMGQTGIQDI 192
+ + +P L+ + + + + L + Q I
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK-TNSHLPAGKQVEI--- 368
Query: 193 LTFNFSLVESIRQKLSEYPCLRILSHGPVSGL-GLK------------------------ 227
SLV + ++S GP L GL
Sbjct: 369 -----SLVNGAKN--------LVVS-GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 228 EVTSQYLPVQT-----ILESVQSCVVFQFVPKDAGWGP----VPAY--YDKLNSWLGQIL 276
+ ++++LPV + +L + V + + +P Y +D G L
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD------GSDL 468
Query: 277 QRDVPSVSLNLTETAAFGTVL--RICPFECS------SGGDYESFLVCLDAQVYSGSQGL 328
+ S+S + + V F+ + GG S L L + G+ G+
Sbjct: 469 RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGA--SGLGVLTHRNKDGT-GV 525
Query: 329 FHLPSGSL 336
+ +G+L
Sbjct: 526 RVIVAGTL 533
Score = 33.9 bits (77), Expect = 0.087
Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 41/147 (27%)
Query: 194 TFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVP 253
T+ FS+++ + P + G G ++E Y F
Sbjct: 1656 TYGFSILDIVI----NNPVNLTIHFGGEKGKRIRE---NYSA-------------MIFET 1695
Query: 254 KDAGWGPVPAYYDKLNSWLGQILQRDVPSVSLNLTE-T---------AAFGTVLR---IC 300
G + ++N R L+ T+ T AAF L+ +
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRS-EKGLLSATQFTQPALTLMEKAAF-EDLKSKGLI 1753
Query: 301 PFECS----SGGDYESFLVCLDAQVYS 323
P + + S G+Y + L L A V S
Sbjct: 1754 PADATFAGHSLGEY-AALASL-ADVMS 1778
Score = 30.8 bits (69), Expect = 0.83
Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 38/141 (26%)
Query: 56 TFNFSLVESVRQKLSEYPCLRILSHGPVSGMGLKEVTSQYLPVQTILESVQSCVVFQFVP 115
T+ FS+++ V P + G G ++E S + + +++ +F+ +
Sbjct: 1656 TYGFSILDIVI----NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN 1711
Query: 116 KDAGWYTFYTFISSLLCSDAGWGPVPAYYDKLNSWLGFTNIGDDLST-PLSMQTNEKAIA 174
+ + YTF L++ T T P ++ EKA
Sbjct: 1712 EHSTSYTFR-------------SEK----GLLSA----TQF-----TQP-ALTLMEKAA- 1743
Query: 175 LPVWTTLKSMGQTGIQDILTF 195
+ LKS G I TF
Sbjct: 1744 ---FEDLKSKG--LIPADATF 1759
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 2e-04
Identities = 51/297 (17%), Positives = 94/297 (31%), Gaps = 86/297 (28%)
Query: 48 QTGIQDILT---------FNFSLVE-SVRQKLSEYPCLRILSHGPVSGMGLKEVTSQYLP 97
Q +DIL+ F+ V+ + LS+ I+ K+ S L
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII--------MSKDAVSGTLR 66
Query: 98 VQTILESVQSCVVFQFVPKDAGWYTFYTFISSLLCSDAGWGPVPAYYDKLNSWLGFTNIG 157
+ L S Q +V +FV +L + +
Sbjct: 67 LFWTLLSKQEEMVQKFV-------------EEVLRINYKF-------------------- 93
Query: 158 DDLSTPLSMQTNEKAIALPVWTTLKSMGQTGIQDILTFNFS---LVESIRQKLSEY-PCL 213
L +P+ + + ++ ++ + Q +N S +RQ L E P
Sbjct: 94 --LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 214 RILSHGPVSGLGLKEVTSQYLPVQTIL-ESVQSCVVFQ-FVPKDAGWGPVPAYYDKLNSW 271
+L G V G G K + + L VQ + F+ F W + + +
Sbjct: 152 NVLIDG-VLGSG-KTW----VALDVCLSYKVQCKMDFKIF------WLNL-KNCNSPETV 198
Query: 272 LGQILQRDVPSVSLNLTETAAFGTVLRICPFECSSGGD----------YESFLVCLD 318
L ++LQ+ + + N T + + + S YE+ L+ L
Sbjct: 199 L-EMLQKLLYQIDPNWTSRSDHSSNI---KLRIHSIQAELRRLLKSKPYENCLLVLL 251
Score = 29.8 bits (66), Expect = 1.5
Identities = 30/176 (17%), Positives = 55/176 (31%), Gaps = 54/176 (30%)
Query: 186 QTGIQDILT---------FNFSLVE-SIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLP 235
Q +DIL+ F+ V+ + LS+ I+ K+ S L
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII--------MSKDAVSGTLR 66
Query: 236 VQTILESVQSCVVFQFV----PKDAGW-------------GPVPAYYDKLNSWLGQILQR 278
+ L S Q +V +FV + + Y ++ + L
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR-----LYN 121
Query: 279 DVPSVS-LNLTETAAFGTVLRICPFECSS---------GGDYESFL---VCLDAQV 321
D + N++ + LR E G ++++ VCL +V
Sbjct: 122 DNQVFAKYNVSRLQPY-LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 38.1 bits (89), Expect = 0.004
Identities = 19/139 (13%), Positives = 40/139 (28%), Gaps = 24/139 (17%)
Query: 165 SMQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGL 224
++Q W K+ G G ++ + L E + K+ ++ +G
Sbjct: 360 AIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPE-H 418
Query: 225 GLKEVTSQYLPVQTILESVQSCVVFQFVPKD-AGWGPVPAYYDKLNSWLGQILQRDVPSV 283
V F ++P+ G P +KL+ +I + S
Sbjct: 419 TN--------------------VCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESG 458
Query: 284 SLNLTETAAFG--TVLRIC 300
+ + R+
Sbjct: 459 TTMVGYQPQGDKANFFRMV 477
Score = 34.3 bits (79), Expect = 0.054
Identities = 9/57 (15%), Positives = 20/57 (35%)
Query: 27 SMQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILSHGPV 83
++Q W K+ G G ++ + L E + K+ ++ +G
Sbjct: 360 AIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEP 416
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 37.7 bits (88), Expect = 0.004
Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 26/139 (18%)
Query: 165 SMQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGL 224
+Q + L +W K+ G G++ + F L + +++ + ++
Sbjct: 375 VVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEF--- 431
Query: 225 GLKEVTSQYLPVQTILESVQSCVVFQFVPKD-AGWGPVPAYYDKLNSWLGQILQRDVPSV 283
V F FVP G P Y+++L+ + +R V
Sbjct: 432 --------------------VNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEG 471
Query: 284 SLNLTETAAFG--TVLRIC 300
S+ + R+
Sbjct: 472 SMMIGYQPHGTRGNFFRVV 490
Score = 35.1 bits (81), Expect = 0.030
Identities = 8/58 (13%), Positives = 22/58 (37%)
Query: 27 SMQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILSHGPVS 84
+Q + L +W K+ G G++ + F L + +++ + ++
Sbjct: 375 VVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFV 432
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 37.4 bits (87), Expect = 0.005
Identities = 9/83 (10%), Positives = 24/83 (28%), Gaps = 23/83 (27%)
Query: 36 ALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILSHGPVSGMGLKEVTSQY 95
++ +W ++S G +Q + + + + P I +
Sbjct: 363 SVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPA---------------- 406
Query: 96 LPVQTILESVQSCVVFQFVPKDA 118
+ VVF+ ++
Sbjct: 407 -------KRHLGLVVFRLKGPNS 422
Score = 36.6 bits (85), Expect = 0.008
Identities = 9/83 (10%), Positives = 24/83 (28%), Gaps = 23/83 (27%)
Query: 174 ALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQY 233
++ +W ++S G +Q + + + + P I +
Sbjct: 363 SVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPA---------------- 406
Query: 234 LPVQTILESVQSCVVFQFVPKDA 256
+ VVF+ ++
Sbjct: 407 -------KRHLGLVVFRLKGPNS 422
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 37.4 bits (87), Expect = 0.005
Identities = 9/83 (10%), Positives = 20/83 (24%), Gaps = 23/83 (27%)
Query: 36 ALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILSHGPVSGMGLKEVTSQY 95
AL +W L+ G +Q + + + + + +
Sbjct: 356 ALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAA---------------- 399
Query: 96 LPVQTILESVQSCVVFQFVPKDA 118
E V F+ +
Sbjct: 400 -------EINMGLVCFRLKGSNE 415
Score = 37.0 bits (86), Expect = 0.008
Identities = 9/83 (10%), Positives = 20/83 (24%), Gaps = 23/83 (27%)
Query: 174 ALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQY 233
AL +W L+ G +Q + + + + + +
Sbjct: 356 ALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAA---------------- 399
Query: 234 LPVQTILESVQSCVVFQFVPKDA 256
E V F+ +
Sbjct: 400 -------EINMGLVCFRLKGSNE 415
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 36.6 bits (85), Expect = 0.010
Identities = 11/83 (13%), Positives = 22/83 (26%), Gaps = 23/83 (27%)
Query: 36 ALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILSHGPVSGMGLKEVTSQY 95
+L +W + G G+Q + + L + + P + +
Sbjct: 359 SLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCA---------------- 402
Query: 96 LPVQTILESVQSCVVFQFVPKDA 118
E V F+ D
Sbjct: 403 -------EVTLGLVCFRLKGSDG 418
Score = 35.9 bits (83), Expect = 0.016
Identities = 11/83 (13%), Positives = 22/83 (26%), Gaps = 23/83 (27%)
Query: 174 ALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQY 233
+L +W + G G+Q + + L + + P + +
Sbjct: 359 SLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCA---------------- 402
Query: 234 LPVQTILESVQSCVVFQFVPKDA 256
E V F+ D
Sbjct: 403 -------EVTLGLVCFRLKGSDG 418
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 35.4 bits (82), Expect = 0.028
Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 41/161 (25%)
Query: 141 PAYYDKLNSWLGFTNIGDDLSTPLSMQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLV 200
Y ++ + N+ D S+ T ++ AL V+ T++++G + D+ +
Sbjct: 351 ADYLNREHD--ELPNLVD-----KSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQT 403
Query: 201 ESIRQKLSEYPCLRILSHGPVSGLGLKEVTSQYLPVQTILESVQSCVVFQFVPKDAGWGP 260
+ + +L+ S V+F+ +
Sbjct: 404 LEVADMIRTNDQFELLA-----------------EPSL------STVLFRATHET----- 435
Query: 261 VPAYYDKLNSWLGQILQRDVPSVSLNLTETAAFG-TVLRIC 300
A D+LN + + L ET G T L+
Sbjct: 436 --ADLDELNK---ALRLEALTRGIAVLGETIVDGKTALKFT 471
Score = 33.1 bits (76), Expect = 0.15
Identities = 10/53 (18%), Positives = 24/53 (45%)
Query: 27 SMQTNEKAIALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRILS 79
S+ T ++ AL V+ T++++G + D+ + V + +L+
Sbjct: 368 SIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLA 420
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 32.7 bits (74), Expect = 0.17
Identities = 5/43 (11%), Positives = 16/43 (37%)
Query: 174 ALPVWTTLKSMGQTGIQDILTFNFSLVESIRQKLSEYPCLRIL 216
+ +L SMG +++ + + + + L++
Sbjct: 333 VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGG 375
Score = 31.2 bits (70), Expect = 0.52
Identities = 5/43 (11%), Positives = 16/43 (37%)
Query: 36 ALPVWTTLKSMGQTGIQDILTFNFSLVESVRQKLSEYPCLRIL 78
+ +L SMG +++ + + + + L++
Sbjct: 333 VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGG 375
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 31.1 bits (70), Expect = 0.49
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 36 ALPVWTTLKSMGQTGIQDILT---FNFSLVESVRQKLSEYPCLRIL--SHGPVS-GMGLK 89
+L V TL S+G +G + +L F + + +KL+E R+L H P+S M LK
Sbjct: 301 SLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLK 360
Query: 90 EVTSQ 94
+
Sbjct: 361 TIDGH 365
Score = 31.1 bits (70), Expect = 0.59
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 174 ALPVWTTLKSMGQTGIQDILT---FNFSLVESIRQKLSEYPCLRIL--SHGPVS-GLGLK 227
+L V TL S+G +G + +L F + + +KL+E R+L H P+S + LK
Sbjct: 301 SLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLK 360
Query: 228 EVTSQ 232
+
Sbjct: 361 TIDGH 365
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB:
1pzv_A
Length = 172
Score = 27.4 bits (61), Expect = 4.9
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 74 CLRILSHGPVSGMGLKEVTSQYLPVQT---ILESVQS 107
C+ IL G ++ ++LP+ T I+ SV S
Sbjct: 102 CISILHEPGEDKYGYEKPEERWLPIHTVETIMISVIS 138
Score = 26.6 bits (59), Expect = 8.2
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 212 CLRILSHGPVSGLGLKEVTSQYLPVQT---ILESVQS 245
C+ IL G ++ ++LP+ T I+ SV S
Sbjct: 102 CISILHEPGEDKYGYEKPEERWLPIHTVETIMISVIS 138
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 26.6 bits (59), Expect = 8.8
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 74 CLRILSHGPVSGMGLKEVTSQYLPVQT---ILESVQS 107
C+ IL + + ++ P Q IL SV S
Sbjct: 92 CISILHPPVDDPQSGELPSERWNPTQNVRTILLSVIS 128
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase,
UBL conjugation pathway, endo reticulum, membrane,
metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A
2kly_A
Length = 164
Score = 26.5 bits (59), Expect = 9.1
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 74 CLRILSHGPVSGMGLKEVTSQYLPVQT---ILESVQS 107
C+ IL MG + ++ PVQ+ IL SV S
Sbjct: 88 CISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVS 124
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.418
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,963,204
Number of extensions: 280921
Number of successful extensions: 524
Number of sequences better than 10.0: 1
Number of HSP's gapped: 519
Number of HSP's successfully gapped: 28
Length of query: 337
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 243
Effective length of database: 4,077,219
Effective search space: 990764217
Effective search space used: 990764217
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)