RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2480
         (337 letters)



>d1iuaa_ g.35.1.1 (A:) HIPIP (high potential iron protein)
           {Thermochromatium tepidum [TaxId: 1050]}
          Length = 83

 Score = 25.6 bits (56), Expect = 2.9
 Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 7/34 (20%)

Query: 245 SCVVFQFVPKDAGWGPVPAYYDKL-------NSW 271
           +C   Q    +  W     +  KL        SW
Sbjct: 45  NCQFMQANVGEGDWKGCQLFPGKLINVNGWCASW 78


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0534    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,222,393
Number of extensions: 54943
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 4
Length of query: 337
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,226,816
Effective search space: 307930816
Effective search space used: 307930816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)