BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2484
         (98 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
           Decarboxylase; Insights Into The Mechanism Of
           Autoinactivation
 pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
           Decarboxylase; Insights Into The Mechanism Of
           Autoinactivation
          Length = 511

 Score = 34.3 bits (77), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 4   GSSLNGHVDNVSLLQEICAKYNLWLHL 30
           G+++ G  D +  + +IC KYNLWLH+
Sbjct: 257 GTTVYGAFDPIQEIADICEKYNLWLHV 283


>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
           Glutamic Acid Decarboxylase (Gad67)
 pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
           Glutamic Acid Decarboxylase (Gad67)
          Length = 504

 Score = 34.3 bits (77), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 4   GSSLNGHVDNVSLLQEICAKYNLWLHL 30
           G+++ G  D +  + +IC KYNLWLH+
Sbjct: 254 GTTVYGAFDPIQEIADICEKYNLWLHV 280


>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
           Glutamic Acid Decarboxylase (Gad65)
          Length = 497

 Score = 28.1 bits (61), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 4   GSSLNGHVDNVSLLQEICAKYNLWLHL 30
           G+++ G  D +  + +IC KY +W+H+
Sbjct: 250 GTTVYGAFDPLLAVADICKKYKIWMHV 276


>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
           Complex With Plp.
 pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
           Complex With Plp
          Length = 515

 Score = 26.9 bits (58), Expect = 2.8,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 18/27 (66%)

Query: 4   GSSLNGHVDNVSLLQEICAKYNLWLHL 30
           G+++ G  D +  + ++C ++ LWLH+
Sbjct: 268 GTTVLGAFDPLEAIADVCQRHGLWLHV 294


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.138    0.453 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,720,066
Number of Sequences: 62578
Number of extensions: 73681
Number of successful extensions: 112
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 5
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)