BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2484
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DF78|PDXD1_XENLA Pyridoxal-dependent decarboxylase domain-containing protein 1
OS=Xenopus laevis GN=pdxdc1 PE=2 SV=1
Length = 782
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 9 GHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGH--SVSLPLGTWLNLP 65
GH D + L+E+C +YN+WLH+ G NL++LAL S S L S++L LG WL LP
Sbjct: 250 GHTDKLGRLKELCDQYNIWLHVEGVNLATLALGYVSSSVLAATKCDSMTLTLGPWLGLP 308
>sp|A7MBC2|PDXD1_BOVIN Pyridoxal-dependent decarboxylase domain-containing protein 1
OS=Bos taurus GN=PDXDC1 PE=2 SV=1
Length = 787
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPL--GTW 61
G++ GH D + L+E+C +Y +WLH+ G NL++LAL S S L S+ L G W
Sbjct: 244 GTAAVGHTDKIGRLKEVCEQYGIWLHVEGVNLATLALGYVSSSVLAATKCDSMTLTPGPW 303
Query: 62 LNLP 65
L LP
Sbjct: 304 LGLP 307
>sp|Q99K01|PDXD1_MOUSE Pyridoxal-dependent decarboxylase domain-containing protein 1
OS=Mus musculus GN=Pdxdc1 PE=1 SV=2
Length = 787
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPL--GTW 61
G++ GH D + L+E+C +Y +WLH+ G NL++LAL S S L S+ L G W
Sbjct: 243 GTAAVGHTDKIGRLKELCEQYGIWLHVEGVNLATLALGYVSSSVLAATKCDSMTLTPGLW 302
Query: 62 LNLP 65
L LP
Sbjct: 303 LGLP 306
>sp|Q6P474|PDXD2_HUMAN Putative pyridoxal-dependent decarboxylase domain-containing
protein 2 OS=Homo sapiens GN=PDXDC2P PE=5 SV=3
Length = 469
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPL--GTW 61
G++ GH D + L+E+C +Y +WLH+ G NL++LAL S S L S+ + G W
Sbjct: 243 GTAAVGHTDKIGRLKELCEQYGIWLHVEGVNLATLALGYVSSSVLAAAKCDSMTMTPGPW 302
Query: 62 LNLP 65
L LP
Sbjct: 303 LGLP 306
>sp|Q6P996|PDXD1_HUMAN Pyridoxal-dependent decarboxylase domain-containing protein 1
OS=Homo sapiens GN=PDXDC1 PE=1 SV=2
Length = 788
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPL--GTW 61
G++ GH D + L+E+C +Y +WLH+ G NL++LAL S S L S+ + G W
Sbjct: 243 GTAAVGHTDKIGRLKELCEQYGIWLHVEGVNLATLALGYVSSSVLAAAKCDSMTMTPGPW 302
Query: 62 LNLP 65
L LP
Sbjct: 303 LGLP 306
>sp|Q66HY8|PDXD1_DANRE Pyridoxal-dependent decarboxylase domain-containing protein 1
OS=Danio rerio GN=pdxdc1 PE=2 SV=1
Length = 751
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 9 GHVDNVSLLQEICAKYNLWLHLRGHNLSSLALN--SHSPSPLQPGHSVSLPLGTWLNLP 65
GH D +S L+E+C +YN+WLH+ G NL++L L S + + S++L G WL LP
Sbjct: 232 GHTDKLSRLKELCVQYNMWLHVEGVNLATLVLGQVSSTVTAATKCDSMTLTPGPWLGLP 290
>sp|Q5R7S7|DCE1_PONAB Glutamate decarboxylase 1 OS=Pongo abelii GN=GAD1 PE=2 SV=1
Length = 594
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 4 GSSLNGHVDNVSLLQEICAKYNLWLHL 30
G+++ G D + + +IC KYNLWLH+
Sbjct: 346 GTTVYGAFDPIQEIADICEKYNLWLHV 372
>sp|P48319|DCE1_PIG Glutamate decarboxylase 1 OS=Sus scrofa GN=GAD1 PE=2 SV=1
Length = 594
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 4 GSSLNGHVDNVSLLQEICAKYNLWLHL 30
G+++ G D + + +IC KYNLWLH+
Sbjct: 346 GTTVYGAFDPIQEIADICEKYNLWLHV 372
>sp|Q5IS68|DCE1_PANTR Glutamate decarboxylase 1 OS=Pan troglodytes GN=GAD1 PE=2 SV=1
Length = 594
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 4 GSSLNGHVDNVSLLQEICAKYNLWLHL 30
G+++ G D + + +IC KYNLWLH+
Sbjct: 346 GTTVYGAFDPIQEIADICEKYNLWLHV 372
>sp|P48318|DCE1_MOUSE Glutamate decarboxylase 1 OS=Mus musculus GN=Gad1 PE=2 SV=2
Length = 593
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 4 GSSLNGHVDNVSLLQEICAKYNLWLHL 30
G+++ G D + + +IC KYNLWLH+
Sbjct: 345 GTTVYGAFDPIQEIADICEKYNLWLHV 371
>sp|Q99259|DCE1_HUMAN Glutamate decarboxylase 1 OS=Homo sapiens GN=GAD1 PE=1 SV=1
Length = 594
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 4 GSSLNGHVDNVSLLQEICAKYNLWLHL 30
G+++ G D + + +IC KYNLWLH+
Sbjct: 346 GTTVYGAFDPIQEIADICEKYNLWLHV 372
>sp|P14748|DCE1_FELCA Glutamate decarboxylase 1 OS=Felis catus GN=GAD1 PE=2 SV=3
Length = 594
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 4 GSSLNGHVDNVSLLQEICAKYNLWLHL 30
G+++ G D + + +IC KYNLWLH+
Sbjct: 346 GTTVYGAFDPIQEIADICEKYNLWLHV 372
>sp|A0PA85|DCE1_CANFA Glutamate decarboxylase 1 OS=Canis familiaris GN=GAD1 PE=2 SV=1
Length = 594
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 4 GSSLNGHVDNVSLLQEICAKYNLWLHL 30
G+++ G D + + +IC KYNLWLH+
Sbjct: 346 GTTVYGAFDPIQEIADICEKYNLWLHV 372
>sp|Q0VCA1|DCE1_BOVIN Glutamate decarboxylase 1 OS=Bos taurus GN=GAD1 PE=2 SV=1
Length = 594
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 4 GSSLNGHVDNVSLLQEICAKYNLWLHL 30
G+++ G D + + +IC KYNLWLH+
Sbjct: 346 GTTVYGAFDPIQEIADICEKYNLWLHV 372
>sp|P18088|DCE1_RAT Glutamate decarboxylase 1 OS=Rattus norvegicus GN=Gad1 PE=2 SV=1
Length = 593
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 4 GSSLNGHVDNVSLLQEICAKYNLWLHL 30
G+++ G D + + +IC KYNLWLH+
Sbjct: 345 GTTVYGAFDPIQEIADICEKYNLWLHV 371
>sp|P20228|DCE_DROME Glutamate decarboxylase OS=Drosophila melanogaster GN=Gad1 PE=2
SV=2
Length = 510
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 4 GSSLNGHVDNVSLLQEICAKYNLWLHL 30
G+++ G D+++ + +IC KYN W+H+
Sbjct: 262 GTTVLGAFDDINTIADICQKYNCWMHI 288
>sp|Q48FH7|RLMD_PSE14 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=rlmD PE=3 SV=1
Length = 451
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 14/57 (24%)
Query: 13 NVSLLQEICAKY--NLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS 67
+++LLQ C+K+ LWLH G P P+ PG ++ L W NL L+
Sbjct: 231 DLALLQAFCSKHGAQLWLHGEGE-----------PQPVSPGDTLGYRLEPW-NLQLA 275
>sp|P05824|RECN_ECOLI DNA repair protein RecN OS=Escherichia coli (strain K12) GN=recN
PE=1 SV=2
Length = 553
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 7 LNGHVDNVSLLQEICAKYNLW 27
L+G+ + SLLQE+ A+Y LW
Sbjct: 146 LDGYANETSLLQEMTARYQLW 166
>sp|Q4PB36|SET1_USTMA Histone-lysine N-methyltransferase, H3 lysine-4 specific
OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SET1 PE=3
SV=1
Length = 1468
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 44 SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR 76
+PS P + P G ++PLS+P+P + +R
Sbjct: 849 APSQHAPSQQIRTPSGKHASVPLSMPAPPKQER 881
>sp|O36021|YEK9_SCHPO Uncharacterized protein C4F10.09c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC4F10.09c PE=1 SV=1
Length = 860
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 2 EIGSSLNGHVDNVSLL-------QEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSV 54
EI LN VSLL ++I K NL LH H L A + S GHS+
Sbjct: 592 EIHPFLNHFHPTVSLLAKSLVYGEKILGKPNLSLHTLNHFLDKFAYRNPKKSAAARGHSI 651
Query: 55 SLPLGTWLN 63
PL L+
Sbjct: 652 MQPLAGGLS 660
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,163,859
Number of Sequences: 539616
Number of extensions: 1611284
Number of successful extensions: 5166
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 5122
Number of HSP's gapped (non-prelim): 67
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)