Query psy2484
Match_columns 98
No_of_seqs 109 out of 641
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 17:26:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02590 probable tyrosine dec 99.9 6.4E-29 1.4E-33 207.7 2.7 76 1-77 293-371 (539)
2 PF00282 Pyridoxal_deC: Pyrido 99.9 5.3E-27 1.1E-31 187.1 5.6 77 2-79 201-280 (373)
3 PLN02880 tyrosine decarboxylas 99.9 1.3E-27 2.8E-32 196.6 1.7 75 1-76 245-322 (490)
4 KOG0629|consensus 99.9 3E-27 6.5E-32 195.4 1.6 86 2-88 260-356 (510)
5 COG0076 GadB Glutamate decarbo 99.9 8.9E-24 1.9E-28 173.9 5.0 90 1-90 213-308 (460)
6 PLN02263 serine decarboxylase 99.9 1.2E-23 2.7E-28 174.2 5.3 75 1-76 234-316 (470)
7 TIGR03811 tyr_de_CO2_Ent tyros 99.9 5.6E-24 1.2E-28 180.4 3.1 77 1-78 284-400 (608)
8 TIGR03799 NOD_PanD_pyr putativ 99.9 5.1E-23 1.1E-27 171.3 4.5 75 2-77 272-349 (522)
9 PLN03032 serine decarboxylase; 99.8 2.1E-19 4.5E-24 144.5 6.2 74 2-76 168-249 (374)
10 KOG0628|consensus 99.8 4E-20 8.6E-25 153.9 1.6 82 2-83 242-326 (511)
11 PRK02769 histidine decarboxyla 99.8 6.9E-19 1.5E-23 141.0 5.9 75 1-75 166-246 (380)
12 TIGR01788 Glu-decarb-GAD gluta 99.8 8.2E-19 1.8E-23 143.0 5.4 75 1-76 192-277 (431)
13 cd06450 DOPA_deC_like DOPA dec 99.4 1.3E-13 2.9E-18 104.5 2.9 69 2-70 155-226 (345)
14 KOG0630|consensus 99.4 1.1E-13 2.5E-18 117.9 2.5 79 2-81 299-381 (838)
15 TIGR03531 selenium_SpcS O-phos 99.3 8.7E-13 1.9E-17 108.8 4.6 80 2-82 212-294 (444)
16 PRK13520 L-tyrosine decarboxyl 99.1 2.6E-10 5.6E-15 87.3 5.5 74 3-77 159-236 (371)
17 PRK05367 glycine dehydrogenase 99.1 2.6E-10 5.7E-15 101.3 6.3 66 2-69 647-712 (954)
18 TIGR03812 tyr_de_CO2_Arch tyro 99.0 3.1E-10 6.8E-15 87.1 5.0 71 3-73 161-238 (373)
19 cd01494 AAT_I Aspartate aminot 98.9 2.4E-09 5.1E-14 71.9 5.1 69 3-72 100-168 (170)
20 PLN02651 cysteine desulfurase 98.8 3.6E-09 7.8E-14 82.2 4.6 69 3-75 146-214 (364)
21 TIGR01977 am_tr_V_EF2568 cyste 98.8 8.4E-09 1.8E-13 79.3 5.5 70 3-76 145-215 (376)
22 PRK04366 glycine dehydrogenase 98.8 7.4E-09 1.6E-13 85.0 5.3 61 7-69 219-280 (481)
23 TIGR00461 gcvP glycine dehydro 98.8 8.8E-09 1.9E-13 91.9 5.8 64 2-68 635-699 (939)
24 TIGR02006 IscS cysteine desulf 98.8 9.1E-09 2E-13 81.3 4.8 70 3-76 150-219 (402)
25 TIGR03235 DNA_S_dndA cysteine 98.7 1.6E-08 3.4E-13 77.9 4.4 70 3-77 146-215 (353)
26 cd06453 SufS_like Cysteine des 98.7 2E-08 4.4E-13 77.3 4.8 67 4-75 148-214 (373)
27 TIGR03403 nifS_epsilon cystein 98.6 5.1E-08 1.1E-12 76.0 4.7 67 4-74 149-215 (382)
28 cd00613 GDC-P Glycine cleavage 98.5 1.3E-07 2.8E-12 73.4 4.3 57 7-67 170-227 (398)
29 TIGR01979 sufS cysteine desulf 98.5 2.1E-07 4.5E-12 72.7 5.2 67 3-73 167-233 (403)
30 PTZ00094 serine hydroxymethylt 98.4 6.2E-07 1.4E-11 72.7 6.8 70 5-76 190-259 (452)
31 cd06451 AGAT_like Alanine-glyo 98.4 4.6E-07 1E-11 69.4 4.9 67 4-73 133-199 (356)
32 TIGR03402 FeS_nifS cysteine de 98.4 3.9E-07 8.5E-12 70.8 4.4 67 4-74 145-211 (379)
33 PRK14012 cysteine desulfurase; 98.4 5.1E-07 1.1E-11 71.3 4.7 69 4-76 153-221 (404)
34 PRK02948 cysteine desulfurase; 98.4 4.9E-07 1.1E-11 70.3 4.4 67 3-73 146-212 (381)
35 PRK09331 Sep-tRNA:Cys-tRNA syn 98.3 8.4E-07 1.8E-11 70.1 4.5 66 5-75 168-234 (387)
36 cd00615 Orn_deC_like Ornithine 98.3 3.2E-07 7E-12 70.0 1.3 70 6-76 164-235 (294)
37 PF00266 Aminotran_5: Aminotra 98.2 1.7E-06 3.6E-11 67.2 5.0 70 2-75 146-215 (371)
38 TIGR01814 kynureninase kynuren 98.2 3.2E-06 6.9E-11 66.9 5.7 68 4-76 180-248 (406)
39 COG1104 NifS Cysteine sulfinat 98.2 2.5E-06 5.4E-11 70.3 4.8 62 7-73 153-215 (386)
40 PLN02414 glycine dehydrogenase 98.2 3.4E-06 7.3E-11 76.0 5.9 72 2-75 673-749 (993)
41 cd06502 TA_like Low-specificit 98.2 7.4E-07 1.6E-11 67.3 1.5 56 10-65 144-201 (338)
42 PLN03226 serine hydroxymethylt 98.2 4.3E-06 9.4E-11 69.3 6.1 72 3-76 189-260 (475)
43 COG0520 csdA Selenocysteine ly 98.1 3.2E-06 6.8E-11 69.0 5.0 70 2-76 169-239 (405)
44 cd06452 SepCysS Sep-tRNA:Cys-t 98.1 3.9E-06 8.5E-11 65.1 4.1 66 5-75 149-215 (361)
45 PRK09295 bifunctional cysteine 98.1 5.6E-06 1.2E-10 65.3 4.9 65 5-73 174-238 (406)
46 TIGR02326 transamin_PhnW 2-ami 98.0 7E-06 1.5E-10 63.4 4.8 67 4-73 138-204 (363)
47 PRK10874 cysteine sulfinate de 98.0 9E-06 2E-10 63.8 5.1 63 5-71 170-232 (401)
48 TIGR03392 FeS_syn_CsdA cystein 98.0 7.1E-06 1.5E-10 64.3 4.3 62 5-70 167-228 (398)
49 PLN02409 serine--glyoxylate am 98.0 8.8E-06 1.9E-10 64.8 4.5 66 5-73 147-214 (401)
50 PLN02721 threonine aldolase 98.0 4.2E-06 9.2E-11 63.5 2.6 55 12-66 158-214 (353)
51 PLN02855 Bifunctional selenocy 98.0 1.2E-05 2.6E-10 63.9 5.2 65 5-73 183-247 (424)
52 TIGR01976 am_tr_V_VC1184 cyste 98.0 7.1E-06 1.5E-10 63.8 3.7 65 4-73 165-229 (397)
53 KOG1549|consensus 97.9 1.3E-05 2.9E-10 66.8 4.8 66 6-75 192-257 (428)
54 TIGR03301 PhnW-AepZ 2-aminoeth 97.9 1.4E-05 3.1E-10 60.4 4.0 67 5-75 135-201 (355)
55 PF01212 Beta_elim_lyase: Beta 97.9 2.1E-06 4.6E-11 67.2 -0.7 65 11-77 144-210 (290)
56 PRK13034 serine hydroxymethylt 97.9 4.1E-05 8.9E-10 61.8 6.5 70 4-76 175-245 (416)
57 cd06454 KBL_like KBL_like; thi 97.9 2.2E-05 4.7E-10 59.4 4.6 60 6-65 143-207 (349)
58 cd00378 SHMT Serine-glycine hy 97.8 4.4E-05 9.5E-10 59.7 6.0 70 5-76 169-238 (402)
59 cd00616 AHBA_syn 3-amino-5-hyd 97.8 4.2E-05 9E-10 58.1 5.6 68 7-76 115-182 (352)
60 cd00609 AAT_like Aspartate ami 97.8 5.3E-05 1.1E-09 56.3 5.8 62 4-65 141-209 (350)
61 TIGR02618 tyr_phenol_ly tyrosi 97.7 3E-05 6.4E-10 65.0 3.9 65 12-78 191-269 (450)
62 KOG1383|consensus 97.7 5.3E-05 1.2E-09 64.1 5.2 77 1-78 224-306 (491)
63 PRK13479 2-aminoethylphosphona 97.7 6E-05 1.3E-09 58.2 4.9 66 5-73 141-206 (368)
64 PRK00451 glycine dehydrogenase 97.7 3.4E-05 7.5E-10 61.7 3.2 60 6-71 214-280 (447)
65 PRK00011 glyA serine hydroxyme 97.7 0.00013 2.8E-09 57.6 6.3 69 6-76 174-242 (416)
66 PRK13237 tyrosine phenol-lyase 97.6 6.8E-05 1.5E-09 63.0 4.7 68 11-80 197-278 (460)
67 PRK03080 phosphoserine aminotr 97.6 1.9E-05 4.2E-10 62.5 1.0 66 2-75 143-209 (378)
68 TIGR01822 2am3keto_CoA 2-amino 97.6 7.9E-05 1.7E-09 57.9 4.2 60 6-65 181-245 (393)
69 TIGR01437 selA_rel uncharacter 97.5 0.0001 2.2E-09 58.4 4.2 62 7-75 161-222 (363)
70 PLN02271 serine hydroxymethylt 97.5 0.00023 5E-09 61.5 6.3 65 10-76 311-375 (586)
71 TIGR02539 SepCysS Sep-tRNA:Cys 97.5 0.00016 3.6E-09 56.7 5.0 58 5-65 156-213 (370)
72 PRK13580 serine hydroxymethylt 97.5 0.00012 2.5E-09 62.0 4.3 71 4-76 227-300 (493)
73 TIGR02617 tnaA_trp_ase tryptop 97.5 0.00012 2.5E-09 61.8 4.0 65 11-77 203-281 (467)
74 KOG1368|consensus 97.5 3E-05 6.4E-10 63.4 0.4 61 11-73 174-236 (384)
75 PRK12566 glycine dehydrogenase 97.5 0.00015 3.2E-09 65.5 4.6 65 5-71 651-715 (954)
76 PRK05958 8-amino-7-oxononanoat 97.4 0.00028 6.1E-09 54.1 5.2 60 6-65 179-244 (385)
77 TIGR03588 PseC UDP-4-keto-6-de 97.4 0.00027 5.9E-09 55.4 5.0 68 7-76 130-199 (380)
78 PLN02724 Molybdenum cofactor s 97.4 0.00024 5.2E-09 62.1 4.7 69 3-75 200-277 (805)
79 PRK07179 hypothetical protein; 97.3 0.00046 9.9E-09 54.6 5.2 64 7-72 193-261 (407)
80 TIGR01329 cysta_beta_ly_E cyst 97.2 0.00053 1.2E-08 54.7 4.6 68 6-77 142-210 (378)
81 PRK06767 methionine gamma-lyas 97.2 0.00078 1.7E-08 53.7 5.4 65 7-76 158-224 (386)
82 COG2008 GLY1 Threonine aldolas 97.1 0.0002 4.4E-09 58.4 1.6 62 11-74 149-212 (342)
83 PRK11658 UDP-4-amino-4-deoxy-L 97.1 0.00096 2.1E-08 52.9 5.0 67 7-76 130-196 (379)
84 PRK07504 O-succinylhomoserine 97.0 0.0009 2E-08 53.9 4.6 65 7-76 162-228 (398)
85 cd00614 CGS_like CGS_like: Cys 97.0 0.0012 2.7E-08 52.0 5.2 66 6-76 136-203 (369)
86 PRK08133 O-succinylhomoserine 97.0 0.0011 2.3E-08 53.3 4.6 65 6-75 157-223 (390)
87 PRK13238 tnaA tryptophanase/L- 97.0 0.00079 1.7E-08 55.6 4.0 65 11-77 197-275 (460)
88 PRK05937 8-amino-7-oxononanoat 96.9 0.0014 2.9E-08 51.5 4.6 62 6-68 154-219 (370)
89 cd00617 Tnase_like Tryptophana 96.9 0.0013 2.7E-08 54.4 4.3 65 11-77 172-250 (431)
90 TIGR01328 met_gam_lyase methio 96.9 0.002 4.3E-08 51.8 5.3 63 7-74 156-220 (391)
91 PRK06939 2-amino-3-ketobutyrat 96.9 0.0016 3.4E-08 50.3 4.3 57 7-63 186-247 (397)
92 PRK08134 O-acetylhomoserine am 96.9 0.0015 3.3E-08 53.6 4.4 57 6-67 160-216 (433)
93 TIGR01325 O_suc_HS_sulf O-succ 96.8 0.0021 4.6E-08 51.2 4.8 64 7-75 151-216 (380)
94 PLN02509 cystathionine beta-ly 96.7 0.0025 5.3E-08 53.2 4.9 68 6-77 228-296 (464)
95 PRK05613 O-acetylhomoserine am 96.7 0.0027 5.8E-08 52.4 5.0 62 8-74 168-231 (437)
96 PRK05939 hypothetical protein; 96.7 0.0018 3.8E-08 52.4 3.8 58 6-68 142-199 (397)
97 TIGR00858 bioF 8-amino-7-oxono 96.7 0.0031 6.7E-08 47.6 4.8 60 6-65 157-222 (360)
98 PRK07811 cystathionine gamma-s 96.7 0.0033 7.2E-08 50.4 5.1 66 7-77 158-225 (388)
99 TIGR01825 gly_Cac_T_rel pyrido 96.6 0.0034 7.4E-08 48.6 4.8 60 6-65 174-238 (385)
100 TIGR01366 serC_3 phosphoserine 96.6 0.00071 1.5E-08 53.6 1.0 56 1-65 134-190 (361)
101 TIGR01326 OAH_OAS_sulfhy OAH/O 96.6 0.0046 9.9E-08 50.0 5.6 57 7-68 154-210 (418)
102 PRK04311 selenocysteine syntha 96.6 0.003 6.4E-08 52.7 4.5 64 10-75 235-306 (464)
103 TIGR01821 5aminolev_synth 5-am 96.6 0.0043 9.3E-08 48.9 5.0 60 6-65 188-252 (402)
104 PRK07671 cystathionine beta-ly 96.6 0.0044 9.5E-08 49.6 5.1 67 7-77 146-213 (377)
105 PRK08574 cystathionine gamma-s 96.5 0.004 8.8E-08 50.0 4.7 66 7-77 149-216 (385)
106 PRK05968 hypothetical protein; 96.5 0.0032 7E-08 50.4 4.1 56 6-65 158-213 (389)
107 PF00464 SHMT: Serine hydroxym 96.5 0.0067 1.5E-07 50.2 5.6 70 4-75 176-245 (399)
108 PRK07050 cystathionine beta-ly 96.4 0.0042 9E-08 50.1 3.9 67 7-77 162-229 (394)
109 PRK06176 cystathionine gamma-s 96.4 0.0081 1.8E-07 48.2 5.4 68 6-77 145-213 (380)
110 PRK05994 O-acetylhomoserine am 96.4 0.0069 1.5E-07 49.4 5.1 55 7-65 160-214 (427)
111 TIGR00474 selA seryl-tRNA(sec) 96.3 0.0052 1.1E-07 51.1 4.2 65 10-76 230-302 (454)
112 PLN02242 methionine gamma-lyas 96.3 0.0061 1.3E-07 49.7 4.6 56 7-68 175-230 (418)
113 PRK08776 cystathionine gamma-s 96.2 0.01 2.2E-07 48.2 5.5 68 6-78 156-225 (405)
114 PRK09064 5-aminolevulinate syn 96.2 0.0072 1.6E-07 47.6 4.5 60 6-65 189-253 (407)
115 PRK08248 O-acetylhomoserine am 96.1 0.012 2.6E-07 48.3 5.3 57 6-67 160-216 (431)
116 PRK08861 cystathionine gamma-s 96.1 0.015 3.2E-07 47.1 5.8 68 6-77 149-217 (388)
117 PRK13392 5-aminolevulinate syn 96.1 0.011 2.4E-07 46.8 4.8 59 7-65 190-253 (410)
118 PLN03227 serine palmitoyltrans 95.9 0.018 3.8E-07 46.2 5.4 59 7-65 150-215 (392)
119 TIGR01324 cysta_beta_ly_B cyst 95.9 0.0094 2E-07 47.9 3.8 56 6-65 146-201 (377)
120 PRK07503 methionine gamma-lyas 95.9 0.015 3.3E-07 46.9 5.0 56 7-67 162-217 (403)
121 PRK07812 O-acetylhomoserine am 95.9 0.019 4.2E-07 47.3 5.5 56 7-67 167-222 (436)
122 PF01276 OKR_DC_1: Orn/Lys/Arg 95.9 0.0098 2.1E-07 49.5 3.8 73 5-78 177-257 (417)
123 PRK09028 cystathionine beta-ly 95.8 0.0094 2E-07 48.6 3.6 56 6-65 157-212 (394)
124 PRK08249 cystathionine gamma-s 95.8 0.012 2.7E-07 47.5 4.1 55 7-65 161-215 (398)
125 PRK07582 cystathionine gamma-l 95.8 0.014 3.1E-07 46.3 4.4 55 7-65 144-198 (366)
126 PRK08064 cystathionine beta-ly 95.8 0.021 4.5E-07 45.9 5.3 68 6-77 149-217 (390)
127 PRK11706 TDP-4-oxo-6-deoxy-D-g 95.7 0.019 4E-07 45.4 4.7 69 7-77 128-196 (375)
128 PRK10534 L-threonine aldolase; 95.6 0.0065 1.4E-07 46.3 1.8 61 5-65 137-202 (333)
129 PRK07810 O-succinylhomoserine 95.4 0.034 7.4E-07 45.0 5.4 65 7-76 167-233 (403)
130 PRK15029 arginine decarboxylas 95.4 0.02 4.4E-07 50.8 4.4 71 6-77 322-402 (755)
131 TIGR03576 pyridox_MJ0158 pyrid 95.4 0.018 3.9E-07 45.6 3.7 59 4-62 144-206 (346)
132 TIGR02379 ECA_wecE TDP-4-keto- 95.4 0.025 5.4E-07 45.3 4.4 69 7-76 128-196 (376)
133 PRK07269 cystathionine gamma-s 95.2 0.039 8.4E-07 44.1 5.1 67 7-78 148-216 (364)
134 PRK05367 glycine dehydrogenase 95.1 0.028 6.1E-07 50.9 4.5 58 6-67 216-273 (954)
135 PRK06460 hypothetical protein; 95.1 0.032 7E-07 44.5 4.1 53 7-63 142-194 (376)
136 PRK06084 O-acetylhomoserine am 94.8 0.055 1.2E-06 44.3 4.8 63 6-73 154-218 (425)
137 PLN02822 serine palmitoyltrans 94.7 0.049 1.1E-06 45.1 4.4 58 7-65 257-321 (481)
138 PRK06434 cystathionine gamma-l 94.6 0.048 1E-06 44.3 4.1 64 7-77 160-225 (384)
139 PRK03244 argD acetylornithine 94.6 0.047 1E-06 42.9 3.9 63 7-73 195-265 (398)
140 PRK06234 methionine gamma-lyas 94.6 0.076 1.7E-06 42.7 5.1 64 7-75 161-228 (400)
141 PRK08114 cystathionine beta-ly 94.5 0.051 1.1E-06 44.5 4.1 57 5-65 157-215 (395)
142 PRK13393 5-aminolevulinate syn 94.3 0.085 1.8E-06 41.8 4.7 59 7-65 189-252 (406)
143 TIGR01141 hisC histidinol-phos 94.2 0.011 2.3E-07 45.3 -0.5 60 5-68 152-217 (346)
144 cd00610 OAT_like Acetyl ornith 94.0 0.1 2.3E-06 40.6 4.6 62 8-72 204-272 (413)
145 PRK06225 aspartate aminotransf 93.8 0.082 1.8E-06 41.3 3.8 60 7-68 169-232 (380)
146 PLN02483 serine palmitoyltrans 93.8 0.11 2.4E-06 43.2 4.7 60 6-65 251-316 (489)
147 PRK08247 cystathionine gamma-s 93.8 0.069 1.5E-06 42.3 3.3 54 8-65 149-202 (366)
148 PRK00950 histidinol-phosphate 93.7 0.048 1E-06 41.9 2.3 60 5-68 168-230 (361)
149 PRK15407 lipopolysaccharide bi 93.7 0.11 2.4E-06 42.6 4.6 69 7-77 168-236 (438)
150 PRK06108 aspartate aminotransf 93.6 0.098 2.1E-06 40.4 3.9 57 11-68 177-239 (382)
151 COG0075 Serine-pyruvate aminot 93.6 0.1 2.2E-06 43.2 4.1 69 3-75 139-208 (383)
152 PRK09082 methionine aminotrans 93.5 0.087 1.9E-06 41.4 3.5 61 7-68 175-243 (386)
153 COG0112 GlyA Glycine/serine hy 93.5 0.1 2.3E-06 43.7 4.0 74 3-78 172-245 (413)
154 PRK05764 aspartate aminotransf 93.4 0.12 2.7E-06 40.2 4.2 67 8-76 177-253 (393)
155 TIGR01140 L_thr_O3P_dcar L-thr 93.3 0.041 9E-07 42.4 1.3 59 7-68 137-201 (330)
156 PTZ00125 ornithine aminotransf 93.2 0.16 3.5E-06 39.7 4.5 55 8-66 191-253 (400)
157 PRK07777 aminotransferase; Val 93.1 0.19 4.2E-06 39.3 4.9 62 12-74 179-245 (387)
158 TIGR00707 argD acetylornithine 93.1 0.079 1.7E-06 40.9 2.6 53 10-68 189-245 (379)
159 PLN02414 glycine dehydrogenase 92.9 0.14 2.9E-06 46.9 4.2 57 7-67 245-301 (993)
160 PRK08045 cystathionine gamma-s 92.9 0.23 5E-06 40.0 5.1 67 7-77 149-216 (386)
161 PRK08361 aspartate aminotransf 92.5 0.18 3.9E-06 39.6 4.0 65 6-72 177-250 (391)
162 cd00611 PSAT_like Phosphoserin 92.4 0.042 9.1E-07 43.2 0.2 62 2-75 145-207 (355)
163 TIGR01265 tyr_nico_aTase tyros 92.2 0.11 2.5E-06 41.1 2.5 60 7-68 181-248 (403)
164 TIGR01364 serC_1 phosphoserine 92.0 0.064 1.4E-06 42.6 0.9 62 2-75 137-199 (349)
165 PRK05355 3-phosphoserine/phosp 92.0 0.071 1.5E-06 42.4 1.1 61 2-75 148-210 (360)
166 PF05670 DUF814: Domain of unk 91.4 0.12 2.6E-06 33.9 1.6 48 18-65 24-76 (90)
167 PRK05967 cystathionine beta-ly 91.1 0.2 4.4E-06 41.0 2.9 54 6-63 160-213 (395)
168 PLN02656 tyrosine transaminase 90.7 0.19 4.1E-06 40.1 2.4 61 6-68 180-248 (409)
169 KOG2467|consensus 90.6 0.46 1E-05 40.3 4.6 72 3-75 195-266 (477)
170 PRK07550 hypothetical protein; 90.5 0.76 1.7E-05 35.9 5.5 56 13-70 184-245 (386)
171 TIGR02080 O_succ_thio_ly O-suc 90.4 0.54 1.2E-05 37.8 4.7 68 6-77 147-215 (382)
172 PRK07505 hypothetical protein; 90.3 0.34 7.3E-06 38.4 3.5 30 5-34 189-218 (402)
173 PRK07568 aspartate aminotransf 89.9 0.58 1.3E-05 36.5 4.4 62 7-69 174-243 (397)
174 PF03841 SelA: L-seryl-tRNA se 89.5 0.4 8.7E-06 39.7 3.4 61 13-75 158-226 (367)
175 PRK08363 alanine aminotransfer 89.5 0.63 1.4E-05 36.6 4.4 65 7-73 178-249 (398)
176 PRK07682 hypothetical protein; 89.4 0.43 9.3E-06 37.2 3.3 55 12-67 174-232 (378)
177 PRK08912 hypothetical protein; 89.2 0.96 2.1E-05 35.4 5.2 60 7-68 171-239 (387)
178 COG0156 BioF 7-keto-8-aminopel 89.1 0.62 1.3E-05 38.5 4.2 59 7-65 183-247 (388)
179 TIGR03537 DapC succinyldiamino 89.0 0.79 1.7E-05 35.5 4.5 61 6-68 147-213 (350)
180 COG1003 GcvP Glycine cleavage 88.9 0.58 1.3E-05 40.1 4.0 52 12-65 221-272 (496)
181 PRK07908 hypothetical protein; 88.8 1.2 2.5E-05 34.5 5.3 61 5-68 149-211 (349)
182 PRK07309 aromatic amino acid a 88.8 0.59 1.3E-05 36.9 3.8 67 7-74 178-250 (391)
183 PF01041 DegT_DnrJ_EryC1: DegT 88.7 1 2.3E-05 35.3 5.1 71 5-78 120-191 (363)
184 PRK05093 argD bifunctional N-s 88.4 0.42 9E-06 38.0 2.7 26 10-35 203-228 (403)
185 COG0399 WecE Predicted pyridox 88.2 0.7 1.5E-05 38.1 4.0 70 7-78 131-200 (374)
186 PRK07324 transaminase; Validat 88.0 0.61 1.3E-05 36.7 3.4 60 7-68 165-229 (373)
187 TIGR01885 Orn_aminotrans ornit 87.6 0.61 1.3E-05 36.9 3.2 53 9-65 200-260 (401)
188 TIGR03246 arg_catab_astC succi 87.2 0.54 1.2E-05 37.5 2.7 50 10-63 198-251 (397)
189 PRK01278 argD acetylornithine 86.9 0.46 1E-05 37.3 2.1 24 11-34 195-218 (389)
190 PLN00145 tyrosine/nicotianamin 86.8 0.76 1.6E-05 37.2 3.4 30 7-36 202-234 (430)
191 PRK02936 argD acetylornithine 86.6 0.62 1.3E-05 36.3 2.7 52 10-65 186-240 (377)
192 PRK00854 rocD ornithine--oxo-a 86.0 0.88 1.9E-05 35.8 3.3 55 8-65 200-261 (401)
193 PLN00175 aminotransferase fami 85.4 0.72 1.6E-05 37.0 2.6 60 8-69 200-267 (413)
194 PLN02624 ornithine-delta-amino 84.9 0.97 2.1E-05 37.4 3.2 48 14-65 247-298 (474)
195 TIGR01264 tyr_amTase_E tyrosin 84.3 0.81 1.8E-05 36.1 2.4 60 7-68 180-247 (401)
196 PRK12414 putative aminotransfe 84.3 0.74 1.6E-05 36.3 2.1 62 7-69 174-243 (384)
197 PRK08056 threonine-phosphate d 84.2 0.96 2.1E-05 35.2 2.7 59 7-68 154-219 (356)
198 PRK07337 aminotransferase; Val 84.2 1.6 3.5E-05 34.1 4.0 60 7-68 175-239 (388)
199 PRK04073 rocD ornithine--oxo-a 83.9 1.2 2.6E-05 35.3 3.2 48 14-65 209-260 (396)
200 PRK05957 aspartate aminotransf 83.6 2.3 5E-05 33.5 4.7 30 6-35 171-203 (389)
201 PLN02760 4-aminobutyrate:pyruv 83.6 1.6 3.5E-05 36.7 4.0 61 9-74 274-344 (504)
202 TIGR03540 DapC_direct LL-diami 83.5 2.6 5.7E-05 32.8 4.9 60 7-68 176-244 (383)
203 PRK15399 lysine decarboxylase 83.4 1.9 4.2E-05 38.4 4.6 67 6-76 307-382 (713)
204 PRK09148 aminotransferase; Val 83.1 1.6 3.4E-05 34.8 3.6 66 8-75 178-252 (405)
205 PRK02627 acetylornithine amino 82.9 0.91 2E-05 35.3 2.1 25 11-35 202-226 (396)
206 PTZ00433 tyrosine aminotransfe 82.2 1 2.2E-05 35.9 2.1 56 11-68 196-256 (412)
207 PRK07683 aminotransferase A; V 81.6 1.3 2.8E-05 34.9 2.6 66 7-73 173-245 (387)
208 PRK13578 ornithine decarboxyla 81.2 0.97 2.1E-05 40.3 1.9 69 6-76 292-370 (720)
209 PRK15400 lysine decarboxylase 80.5 1.7 3.7E-05 38.7 3.2 68 6-76 307-382 (714)
210 TIGR03539 DapC_actino succinyl 80.3 1.3 2.8E-05 34.4 2.1 55 12-68 162-224 (357)
211 PRK08175 aminotransferase; Val 80.0 2 4.4E-05 33.8 3.2 60 7-68 176-244 (395)
212 PRK04260 acetylornithine amino 79.9 1.4 2.9E-05 34.6 2.1 49 12-63 186-237 (375)
213 PRK08354 putative aminotransfe 78.7 1.5 3.2E-05 33.6 2.0 56 8-68 130-189 (311)
214 TIGR00713 hemL glutamate-1-sem 78.5 2.5 5.4E-05 33.7 3.3 52 8-63 208-266 (423)
215 PRK12403 putative aminotransfe 78.2 2.9 6.4E-05 34.5 3.7 55 14-73 245-305 (460)
216 PRK03715 argD acetylornithine 77.9 2.4 5.3E-05 34.1 3.1 58 14-75 202-263 (395)
217 PRK08960 hypothetical protein; 77.8 4.2 9.1E-05 31.9 4.3 59 7-68 177-241 (387)
218 PRK05942 aspartate aminotransf 77.5 2.7 6E-05 33.1 3.2 29 7-35 182-213 (394)
219 PRK08636 aspartate aminotransf 77.1 5 0.00011 31.8 4.6 63 12-76 195-263 (403)
220 PRK09276 LL-diaminopimelate am 77.0 1.9 4.1E-05 33.7 2.2 59 8-68 179-246 (385)
221 TIGR03542 DAPAT_plant LL-diami 76.8 5.6 0.00012 31.5 4.8 56 12-69 193-254 (402)
222 PRK09265 aminotransferase AlaT 76.5 2.9 6.4E-05 33.0 3.1 61 7-68 180-247 (404)
223 PRK02731 histidinol-phosphate 75.2 3.8 8.3E-05 31.6 3.4 69 6-76 165-240 (367)
224 TIGR00700 GABAtrnsam 4-aminobu 75.2 3.4 7.4E-05 33.3 3.2 50 14-69 220-273 (420)
225 PF02347 GDC-P: Glycine cleava 75.1 4.8 0.0001 33.9 4.2 59 7-69 208-266 (429)
226 PRK06702 O-acetylhomoserine am 74.9 5.7 0.00012 33.0 4.6 54 8-65 160-213 (432)
227 PRK07590 L,L-diaminopimelate a 74.2 4.5 9.8E-05 32.1 3.7 58 11-70 195-258 (409)
228 PRK03317 histidinol-phosphate 73.3 0.82 1.8E-05 35.6 -0.7 62 7-69 172-236 (368)
229 PF00155 Aminotran_1_2: Aminot 72.7 3.4 7.4E-05 31.5 2.6 56 12-68 168-228 (363)
230 PRK13355 bifunctional HTH-doma 72.3 4 8.8E-05 33.8 3.1 59 8-68 294-360 (517)
231 PRK00062 glutamate-1-semialdeh 72.2 4.5 9.8E-05 32.7 3.3 53 8-64 210-269 (426)
232 PRK12381 bifunctional succinyl 71.7 3.7 8.1E-05 32.8 2.7 50 10-63 202-255 (406)
233 PRK07366 succinyldiaminopimela 71.7 5.5 0.00012 31.2 3.6 57 12-69 185-247 (388)
234 PRK07865 N-succinyldiaminopime 71.6 3.4 7.4E-05 32.0 2.4 63 12-76 168-238 (364)
235 TIGR00709 dat 2,4-diaminobutyr 71.5 3.8 8.1E-05 33.5 2.7 59 11-73 226-288 (442)
236 PLN00143 tyrosine/nicotianamin 71.0 5.1 0.00011 32.0 3.3 61 8-69 183-250 (409)
237 PRK05630 adenosylmethionine--8 69.9 4.1 8.9E-05 33.3 2.6 64 6-75 216-286 (422)
238 PRK05964 adenosylmethionine--8 69.3 4.4 9.4E-05 32.7 2.6 52 10-65 219-274 (423)
239 PRK06358 threonine-phosphate d 69.0 6.2 0.00013 30.8 3.3 61 12-73 161-225 (354)
240 PRK06348 aspartate aminotransf 68.9 3.9 8.5E-05 32.1 2.2 55 12-68 182-241 (384)
241 KOG1359|consensus 68.4 9.1 0.0002 32.0 4.3 85 7-91 205-299 (417)
242 PRK09264 diaminobutyrate--2-ox 67.1 5.2 0.00011 32.4 2.6 49 10-64 217-271 (425)
243 PRK08593 4-aminobutyrate amino 66.5 6.4 0.00014 32.3 3.1 48 14-65 230-283 (445)
244 PRK05387 histidinol-phosphate 66.0 8 0.00017 29.6 3.4 69 5-76 154-225 (353)
245 PLN02955 8-amino-7-oxononanoat 65.9 11 0.00025 32.0 4.5 59 7-65 261-324 (476)
246 PTZ00377 alanine aminotransfer 65.1 7.3 0.00016 31.9 3.1 29 7-35 230-261 (481)
247 PRK08068 transaminase; Reviewe 64.9 4.9 0.00011 31.5 2.0 55 13-68 188-247 (389)
248 PRK03321 putative aminotransfe 64.8 7.5 0.00016 29.8 3.0 61 7-68 157-223 (352)
249 TIGR00461 gcvP glycine dehydro 64.6 9.2 0.0002 35.3 4.0 58 7-68 205-262 (939)
250 KOG0257|consensus 64.0 6 0.00013 33.5 2.5 25 13-37 193-217 (420)
251 PLN00144 acetylornithine trans 63.5 6 0.00013 31.6 2.3 46 14-63 190-239 (382)
252 PRK05769 4-aminobutyrate amino 63.1 8.3 0.00018 31.6 3.1 51 9-63 235-293 (441)
253 KOG2862|consensus 63.1 6.2 0.00013 33.0 2.4 63 3-70 150-215 (385)
254 PRK03158 histidinol-phosphate 63.0 1.4 3.1E-05 34.0 -1.3 61 6-68 162-229 (359)
255 PTZ00376 aspartate aminotransf 62.8 5.5 0.00012 31.6 2.0 24 12-35 196-219 (404)
256 PRK06207 aspartate aminotransf 62.6 9.7 0.00021 30.4 3.4 61 7-68 190-258 (405)
257 PRK06777 4-aminobutyrate amino 62.6 7.3 0.00016 31.6 2.7 48 12-63 219-270 (421)
258 KOG1357|consensus 61.3 5.8 0.00013 34.4 1.9 27 7-33 288-314 (519)
259 PRK07986 adenosylmethionine--8 61.0 7.8 0.00017 31.8 2.6 49 12-63 226-277 (428)
260 PRK12389 glutamate-1-semialdeh 59.2 11 0.00023 30.7 3.1 59 9-73 214-281 (428)
261 PRK14807 histidinol-phosphate 59.1 3.9 8.4E-05 31.7 0.5 69 6-77 159-229 (351)
262 PRK06107 aspartate aminotransf 57.8 7.8 0.00017 30.7 2.1 61 6-68 177-248 (402)
263 PRK06918 4-aminobutyrate amino 57.4 10 0.00022 31.0 2.7 52 12-69 240-295 (451)
264 PRK04612 argD acetylornithine 57.3 10 0.00023 30.7 2.8 21 13-33 209-229 (408)
265 PLN02397 aspartate transaminas 57.2 8.3 0.00018 31.1 2.1 55 12-68 214-276 (423)
266 PRK06541 hypothetical protein; 56.7 12 0.00026 31.0 3.0 52 9-63 235-293 (460)
267 COG4861 Uncharacterized protei 56.5 9.7 0.00021 31.2 2.4 39 15-54 88-128 (345)
268 PRK09440 avtA valine--pyruvate 56.4 8.6 0.00019 30.4 2.1 25 11-35 198-222 (416)
269 PRK06290 aspartate aminotransf 56.1 8.7 0.00019 30.9 2.1 62 13-75 200-265 (410)
270 PF05889 SLA_LP_auto_ag: Solub 56.0 11 0.00023 31.7 2.6 55 11-65 171-228 (389)
271 PRK09221 beta alanine--pyruvat 55.9 13 0.00027 30.7 3.0 60 9-73 232-301 (445)
272 PRK08088 4-aminobutyrate amino 55.8 11 0.00024 30.3 2.7 25 10-34 218-242 (425)
273 PRK08117 4-aminobutyrate amino 55.6 13 0.00028 30.0 3.1 20 14-33 230-249 (433)
274 PRK13360 omega amino acid--pyr 55.1 13 0.00029 30.5 3.1 60 9-73 229-298 (442)
275 TIGR03538 DapC_gpp succinyldia 54.3 9.5 0.00021 30.0 2.0 24 12-35 185-208 (393)
276 TIGR00508 bioA adenosylmethion 53.9 11 0.00025 30.7 2.5 51 10-63 227-280 (427)
277 COG1921 SelA Selenocysteine sy 53.6 16 0.00034 30.8 3.3 58 13-73 175-234 (395)
278 PRK07681 aspartate aminotransf 53.3 17 0.00036 28.7 3.3 60 8-68 179-246 (399)
279 PRK06173 adenosylmethionine--8 53.2 12 0.00027 30.6 2.6 48 12-63 228-279 (429)
280 PRK06836 aspartate aminotransf 52.3 40 0.00086 26.6 5.3 62 5-69 178-252 (394)
281 PLN02231 alanine transaminase 51.5 11 0.00024 31.9 2.1 26 11-36 290-315 (534)
282 PRK06209 glutamate-1-semialdeh 50.9 12 0.00026 30.6 2.1 51 11-64 203-255 (431)
283 PRK04013 argD acetylornithine/ 49.6 16 0.00035 29.4 2.7 53 14-73 185-243 (364)
284 COG1982 LdcC Arginine/lysine/o 49.5 5 0.00011 35.0 -0.3 72 4-76 174-247 (557)
285 PRK09792 4-aminobutyrate trans 49.3 16 0.00036 29.6 2.7 46 14-63 221-270 (421)
286 PRK09257 aromatic amino acid a 48.8 14 0.00031 29.1 2.2 25 11-35 191-215 (396)
287 TIGR02407 ectoine_ectB diamino 48.5 17 0.00038 29.3 2.7 53 9-64 212-267 (412)
288 PLN02376 1-aminocyclopropane-1 48.3 24 0.00052 29.5 3.6 56 12-68 219-286 (496)
289 PRK07495 4-aminobutyrate amino 48.3 17 0.00037 29.6 2.7 22 12-33 219-240 (425)
290 PRK00615 glutamate-1-semialdeh 47.8 18 0.00038 29.9 2.7 47 14-65 224-276 (433)
291 PF05910 DUF868: Plant protein 47.2 13 0.00029 29.7 1.8 52 24-78 174-236 (274)
292 KOG1360|consensus 47.1 26 0.00056 30.5 3.6 59 6-65 314-378 (570)
293 PRK07049 methionine gamma-lyas 47.1 29 0.00063 28.4 3.8 57 7-68 186-249 (427)
294 PF01053 Cys_Met_Meta_PP: Cys/ 47.0 33 0.00071 28.1 4.1 52 7-63 152-205 (386)
295 PRK03967 histidinol-phosphate 46.3 24 0.00051 27.3 3.1 59 6-68 151-211 (337)
296 PRK05639 4-aminobutyrate amino 46.3 19 0.00042 29.8 2.7 57 12-74 243-305 (457)
297 PRK06062 hypothetical protein; 46.1 22 0.00048 29.3 3.0 61 9-74 228-298 (451)
298 PRK06058 4-aminobutyrate amino 45.8 20 0.00043 29.3 2.7 46 14-63 242-291 (443)
299 PRK06082 4-aminobutyrate amino 45.5 20 0.00044 29.7 2.7 48 14-64 251-301 (459)
300 COG0436 Aspartate/tyrosine/aro 45.1 16 0.00035 29.7 2.1 55 12-68 183-243 (393)
301 PF02638 DUF187: Glycosyl hydr 43.8 22 0.00049 28.1 2.6 20 10-29 68-87 (311)
302 PLN02482 glutamate-1-semialdeh 43.5 22 0.00048 29.8 2.7 55 14-73 269-327 (474)
303 PRK07483 hypothetical protein; 42.8 23 0.00049 29.2 2.6 55 14-74 223-284 (443)
304 PF14488 DUF4434: Domain of un 42.7 31 0.00067 25.0 3.0 27 6-32 59-85 (166)
305 PF01301 Glyco_hydro_35: Glyco 42.4 28 0.0006 27.7 3.0 28 5-32 56-83 (319)
306 PRK09147 succinyldiaminopimela 42.4 20 0.00044 28.1 2.2 25 12-36 186-210 (396)
307 COG1293 Predicted RNA-binding 41.9 10 0.00023 32.7 0.5 46 17-62 465-514 (564)
308 PLN02452 phosphoserine transam 41.6 13 0.00028 30.1 1.0 62 2-76 152-215 (365)
309 TIGR01365 serC_2 phosphoserine 40.9 11 0.00024 30.7 0.5 65 2-74 134-199 (374)
310 PLN02607 1-aminocyclopropane-1 40.9 26 0.00057 28.8 2.7 55 13-68 221-286 (447)
311 COG2873 MET17 O-acetylhomoseri 40.7 33 0.00071 29.2 3.3 61 9-73 161-222 (426)
312 PRK04870 histidinol-phosphate 40.5 38 0.00081 26.1 3.4 30 6-35 164-193 (356)
313 PRK07036 hypothetical protein; 40.5 27 0.00058 29.0 2.7 55 14-73 243-304 (466)
314 PRK06943 adenosylmethionine--8 39.7 28 0.0006 28.8 2.7 60 9-74 240-306 (453)
315 PRK05965 hypothetical protein; 39.5 28 0.00061 28.8 2.7 61 9-74 233-299 (459)
316 PRK06855 aminotransferase; Val 39.1 26 0.00056 28.3 2.4 55 12-68 191-250 (433)
317 PLN02187 rooty/superroot1 38.0 40 0.00086 27.7 3.3 57 12-69 224-284 (462)
318 PRK08742 adenosylmethionine--8 37.9 30 0.00066 28.9 2.7 58 11-74 257-321 (472)
319 PRK08360 4-aminobutyrate amino 37.1 33 0.00071 28.2 2.7 46 14-63 227-276 (443)
320 PRK08297 L-lysine aminotransfe 36.8 33 0.00072 28.2 2.7 47 12-62 246-296 (443)
321 PRK06105 aminotransferase; Pro 36.5 33 0.00072 28.3 2.7 49 14-65 241-295 (460)
322 PLN02368 alanine transaminase 36.4 29 0.00062 28.2 2.2 26 11-36 229-254 (407)
323 PRK06916 adenosylmethionine--8 36.2 34 0.00073 28.3 2.7 58 11-74 244-308 (460)
324 PRK06149 hypothetical protein; 35.4 39 0.00085 30.8 3.1 62 9-75 758-829 (972)
325 COG0161 BioA Adenosylmethionin 34.9 35 0.00075 29.1 2.6 19 14-32 238-256 (449)
326 PRK07482 hypothetical protein; 34.8 37 0.00079 28.1 2.7 58 12-74 241-304 (461)
327 PLN02450 1-aminocyclopropane-1 34.7 32 0.00068 28.4 2.2 58 12-70 211-281 (468)
328 PRK06425 histidinol-phosphate 34.1 33 0.00071 26.4 2.1 57 11-68 141-200 (332)
329 PF13378 MR_MLE_C: Enolase C-t 33.7 24 0.00051 22.9 1.1 24 7-30 28-53 (111)
330 COG1168 MalY Bifunctional PLP- 33.3 31 0.00068 29.0 2.0 56 11-68 177-239 (388)
331 TIGR03372 putres_am_tran putre 32.7 49 0.0011 27.5 3.1 59 9-73 238-307 (442)
332 cd00048 DSRM Double-stranded R 32.3 38 0.00082 19.3 1.8 13 12-24 1-13 (68)
333 COG1103 Archaea-specific pyrid 32.0 94 0.002 25.9 4.5 55 7-65 168-223 (382)
334 PRK05839 hypothetical protein; 31.9 35 0.00075 26.8 2.0 26 11-36 174-199 (374)
335 COG1387 HIS2 Histidinol phosph 31.9 48 0.001 25.2 2.7 28 5-32 166-193 (237)
336 PRK05664 threonine-phosphate d 31.9 29 0.00062 26.7 1.5 62 12-76 144-207 (330)
337 PRK11522 putrescine--2-oxoglut 31.5 50 0.0011 27.4 3.0 55 14-74 254-315 (459)
338 PRK07480 putative aminotransfe 31.2 46 0.001 27.5 2.7 55 14-73 242-302 (456)
339 PTZ00170 D-ribulose-5-phosphat 31.0 44 0.00096 25.1 2.4 21 13-33 20-41 (228)
340 PF05954 Phage_GPD: Phage late 30.8 49 0.0011 24.4 2.5 21 12-32 123-143 (292)
341 KOG0053|consensus 30.6 72 0.0016 27.0 3.7 52 8-64 175-227 (409)
342 PRK07030 adenosylmethionine--8 29.6 51 0.0011 27.4 2.7 49 12-63 236-287 (466)
343 PF07498 Rho_N: Rho terminatio 29.2 35 0.00077 19.5 1.2 14 13-26 6-19 (43)
344 TIGR03251 LAT_fam L-lysine 6-t 28.0 52 0.0011 26.8 2.5 23 11-33 238-260 (431)
345 PRK07481 hypothetical protein; 27.8 58 0.0012 26.8 2.7 56 14-74 236-297 (449)
346 PRK06917 hypothetical protein; 27.8 58 0.0013 26.8 2.7 50 11-63 220-272 (447)
347 PRK06931 diaminobutyrate--2-ox 26.4 63 0.0014 26.8 2.7 50 14-66 248-302 (459)
348 smart00358 DSRM Double-strande 25.2 55 0.0012 18.7 1.6 14 13-26 1-14 (67)
349 smart00299 CLH Clathrin heavy 25.1 50 0.0011 22.0 1.6 15 13-27 71-85 (140)
350 PRK06938 diaminobutyrate--2-ox 24.5 72 0.0016 26.5 2.7 55 13-73 253-313 (464)
351 PRK07678 aminotransferase; Val 23.8 75 0.0016 26.2 2.7 56 14-74 236-297 (451)
352 PF12816 Vps8: Golgi CORVET co 23.3 58 0.0013 24.2 1.8 15 13-27 54-68 (196)
353 COG4992 ArgD Ornithine/acetylo 23.1 77 0.0017 26.8 2.6 21 12-32 205-225 (404)
354 PRK04781 histidinol-phosphate 22.8 1.1E+02 0.0023 24.0 3.3 62 6-69 163-228 (364)
355 PF02757 YLP: YLP motif; Inte 22.2 48 0.001 13.7 0.7 6 85-90 2-7 (9)
356 cd01455 vWA_F11C1-5a_type Von 22.2 1.2E+02 0.0026 23.0 3.3 32 3-34 120-151 (191)
357 TIGR03581 EF_0839 conserved hy 22.0 47 0.001 26.3 1.1 24 10-35 162-185 (236)
358 TIGR00699 GABAtrns_euk 4-amino 22.0 1E+02 0.0022 25.9 3.1 47 14-63 274-325 (464)
359 PF02037 SAP: SAP domain; Int 21.9 83 0.0018 17.1 1.8 13 14-26 6-18 (35)
360 PRK13585 1-(5-phosphoribosyl)- 21.8 1E+02 0.0022 22.7 2.8 25 8-32 59-83 (241)
361 PF00202 Aminotran_3: Aminotra 21.7 94 0.002 24.4 2.8 61 12-75 198-261 (339)
362 PLN02974 adenosylmethionine-8- 21.7 82 0.0018 28.6 2.7 56 14-74 608-669 (817)
363 cd01305 archeal_chlorohydrolas 21.6 1.2E+02 0.0026 22.5 3.2 19 14-32 127-147 (263)
364 PRK05166 histidinol-phosphate 21.6 1.1E+02 0.0024 23.8 3.1 65 6-72 170-242 (371)
365 cd03319 L-Ala-DL-Glu_epimerase 21.1 70 0.0015 24.7 1.9 24 6-29 260-285 (316)
366 KOG1402|consensus 20.8 78 0.0017 26.9 2.2 20 13-32 229-248 (427)
367 PF00128 Alpha-amylase: Alpha 20.8 73 0.0016 23.0 1.8 27 6-32 46-72 (316)
368 PF02844 GARS_N: Phosphoribosy 20.7 1.1E+02 0.0023 20.9 2.5 23 10-32 47-69 (100)
369 PRK15481 transcriptional regul 20.3 1.1E+02 0.0025 24.3 3.0 65 8-76 225-296 (431)
No 1
>PLN02590 probable tyrosine decarboxylase
Probab=99.95 E-value=6.4e-29 Score=207.72 Aligned_cols=76 Identities=18% Similarity=0.307 Sum_probs=66.3
Q ss_pred CCCcccccccCCChHHHHHHHHHcCceEEeeccc-chhhhcCCC--CCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484 1 MEIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHN-LSSLALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV 77 (98)
Q Consensus 1 ~taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~-~~al~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~ 77 (98)
.|+|||++|+||||.+|++||++||+||||||++ |+++++++. ++.|+|+||||++|+||||++||.|+ ++++|++
T Consensus 293 aTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg-~llvr~~ 371 (539)
T PLN02590 293 ATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCS-PLWVKDR 371 (539)
T ss_pred EEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEE-EEEecCH
Confidence 3899999999999999999999999999999984 556667766 48999999999999999999998775 5566654
No 2
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=99.93 E-value=5.3e-27 Score=187.14 Aligned_cols=77 Identities=21% Similarity=0.424 Sum_probs=62.6
Q ss_pred CCcccccccCCChHHHHHHHHHcCceEEeecccch-hhhcCCC--CCCCCccCccccccCccccCCCCCCCeeEEecCCC
Q psy2484 2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLS-SLALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVP 78 (98)
Q Consensus 2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~-al~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~~ 78 (98)
|+|||.+|++||+++|++||++||+||||||++|+ ++++++. +..|+++||||++|+||||++|+.| +++++|++.
T Consensus 201 t~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~-~~~l~r~~~ 279 (373)
T PF00282_consen 201 TAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGC-GVLLVRDKS 279 (373)
T ss_dssp EBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS--EEEEESSGG
T ss_pred cCCCcccccccCHHHHhhhccccceeeeecccccccccccccccccccccccccccccchhhhhcCCccc-eeEEeeccc
Confidence 79999999999999999999999999999998555 5666666 4899999999999999999999766 466777754
Q ss_pred C
Q psy2484 79 P 79 (98)
Q Consensus 79 ~ 79 (98)
.
T Consensus 280 ~ 280 (373)
T PF00282_consen 280 D 280 (373)
T ss_dssp G
T ss_pred c
Confidence 3
No 3
>PLN02880 tyrosine decarboxylase
Probab=99.93 E-value=1.3e-27 Score=196.61 Aligned_cols=75 Identities=12% Similarity=0.216 Sum_probs=65.1
Q ss_pred CCCcccccccCCChHHHHHHHHHcCceEEeecccch-hhhcCCC--CCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484 1 MEIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLS-SLALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 1 ~taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~-al~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
.|+|||++|++|||++|+++|++||+||||||+.|+ ++.+++. +++|+++||||++|+||||++|++|+ ++++|+
T Consensus 245 ataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g-~llvr~ 322 (490)
T PLN02880 245 ATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCS-LLWVKD 322 (490)
T ss_pred EecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEE-EEEEeC
Confidence 389999999999999999999999999999998555 4666665 58999999999999999999998776 455554
No 4
>KOG0629|consensus
Probab=99.93 E-value=3e-27 Score=195.45 Aligned_cols=86 Identities=22% Similarity=0.368 Sum_probs=73.8
Q ss_pred CCcccccccCCChHHHHHHHHHcCceEEeecccchhhhcC-CC--CCCCCccCccccccCccccCCCCCCCeeEEecC--
Q psy2484 2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALN-SH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR-- 76 (98)
Q Consensus 2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~-~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~-- 76 (98)
|||||+.||+|||..|++||++|++|+||||++|+++.++ ++ ++.|+|+|||++||||||++.|+.|+ +++.|.
T Consensus 260 TaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCs-a~l~r~~g 338 (510)
T KOG0629|consen 260 TAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCS-AFLTREEG 338 (510)
T ss_pred cCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHhhccCccccCceeecHHHhhcCcchhh-HHHHHHHH
Confidence 8999999999999999999999999999999977655555 44 58999999999999999999998775 556664
Q ss_pred ------CCCcccccCCCC
Q psy2484 77 ------VPPSGYLAQPAL 88 (98)
Q Consensus 77 ------~~~~~~l~~~~~ 88 (98)
+..+.||||+.-
T Consensus 339 ll~~Cn~~~A~YLFq~dK 356 (510)
T KOG0629|consen 339 LLQRCNQMSAIYLFQQDK 356 (510)
T ss_pred HHHhhcccchhhhhccCc
Confidence 356788888764
No 5
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=99.89 E-value=8.9e-24 Score=173.92 Aligned_cols=90 Identities=18% Similarity=0.197 Sum_probs=73.2
Q ss_pred CCCcccccccCCChHHHHHHHHHcCceEEeecccchhhh-cCCC--C-CCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484 1 MEIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLA-LNSH--S-PSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 1 ~taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~-~~~~--~-~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
+|+|||.+|++|||++|++||++|++|||||||.|+.++ +.+. + .-+++++|||++|+|||+++|++|+.+++++.
T Consensus 213 ~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~ 292 (460)
T COG0076 213 GTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDE 292 (460)
T ss_pred EEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECH
Confidence 379999999999999999999999999999998555544 7766 4 57999999999999999999998875555444
Q ss_pred CCC--cccccCCCCCC
Q psy2484 77 VPP--SGYLAQPALPP 90 (98)
Q Consensus 77 ~~~--~~~l~~~~~~~ 90 (98)
+.. ...+..+++|.
T Consensus 293 e~l~~~~~~~~~yl~~ 308 (460)
T COG0076 293 EALRRILIFADYYLPG 308 (460)
T ss_pred HHhhhhhhcccccCCC
Confidence 233 34445788874
No 6
>PLN02263 serine decarboxylase
Probab=99.88 E-value=1.2e-23 Score=174.23 Aligned_cols=75 Identities=19% Similarity=0.322 Sum_probs=62.2
Q ss_pred CCCcccccccCCChHHHHHHHHHcCc-----eEEeecccchhhh-cCCC--CCCCCccCccccccCccccCCCCCCCeeE
Q psy2484 1 MEIGSSLNGHVDNVSLLQEICAKYNL-----WLHLRGHNLSSLA-LNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPA 72 (98)
Q Consensus 1 ~taGtt~~Ga~D~l~~i~~ic~~~~l-----WlHVDga~~~al~-~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~l 72 (98)
.|+|||.+|++|||++|++||++||+ ||||||++|+..+ +.+. ++++.+.+|||++|+|||+++|+.|++ +
T Consensus 234 ataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~~cgv-l 312 (470)
T PLN02263 234 VNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGV-Q 312 (470)
T ss_pred EEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCCcCccEEEECCccccCCCcCEEE-E
Confidence 37999999999999999999999997 9999999655543 2222 477888899999999999999987764 4
Q ss_pred EecC
Q psy2484 73 RTQR 76 (98)
Q Consensus 73 l~r~ 76 (98)
++|+
T Consensus 313 l~R~ 316 (470)
T PLN02263 313 ITRM 316 (470)
T ss_pred EEeh
Confidence 5554
No 7
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=99.88 E-value=5.6e-24 Score=180.40 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=63.3
Q ss_pred CCCcccccccCCChHHHHHHH---HHcCc--eEEeecccchh---hhcC------------------------------C
Q psy2484 1 MEIGSSLNGHVDNVSLLQEIC---AKYNL--WLHLRGHNLSS---LALN------------------------------S 42 (98)
Q Consensus 1 ~taGtt~~Ga~D~l~~i~~ic---~~~~l--WlHVDga~~~a---l~~~------------------------------~ 42 (98)
.|+|||.+|+||||.+|++|| +++|+ |||||||+|+. ++++ +
T Consensus 284 ataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~ 363 (608)
T TIGR03811 284 GVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISRE 363 (608)
T ss_pred EEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHh
Confidence 389999999999999999999 67998 69999996653 4443 1
Q ss_pred C--CCCCCccCccccccCccccCCCCCCCeeEEecCCC
Q psy2484 43 H--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVP 78 (98)
Q Consensus 43 ~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~~ 78 (98)
. +++|+++|||||+|||||+++||.|+ ++++|+..
T Consensus 364 ~~~~l~gle~ADSItvDpHK~g~~Py~~G-~ll~Rd~~ 400 (608)
T TIGR03811 364 VYNAYKAISEAESVTIDPHKMGYIPYSAG-GIVIQDIR 400 (608)
T ss_pred HHHHHhcCcCceEEEeCcccccccCCCeE-EEEEeCHH
Confidence 1 37899999999999999999998776 55666543
No 8
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=99.87 E-value=5.1e-23 Score=171.30 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=64.1
Q ss_pred CCcccccccCCChHHHHHHHHHcCceEEeecccchh-hhcCCC--CCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484 2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSS-LALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV 77 (98)
Q Consensus 2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~a-l~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~ 77 (98)
|+|||.+|++|||++|+++|++||+||||||+.|++ +.+++. +++|+++|||+++|+||||++|++|++ +++|++
T Consensus 272 taGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~-llvr~~ 349 (522)
T TIGR03799 272 VAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGM-VLFKDP 349 (522)
T ss_pred EecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEE-EEEeCH
Confidence 689999999999999999999999999999986554 444444 489999999999999999999988764 555553
No 9
>PLN03032 serine decarboxylase; Provisional
Probab=99.78 E-value=2.1e-19 Score=144.52 Aligned_cols=74 Identities=23% Similarity=0.371 Sum_probs=59.1
Q ss_pred CCcccccccCCChHHHHHHHHHcC-----ceEEeecccchh-hhcCCC--CCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484 2 EIGSSLNGHVDNVSLLQEICAKYN-----LWLHLRGHNLSS-LALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPAR 73 (98)
Q Consensus 2 taGtt~~Ga~D~l~~i~~ic~~~~-----lWlHVDga~~~a-l~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll 73 (98)
|+|||.+|++||+++|++||++|| +||||||+.|++ +.+.+. .++..+.+|||++|+|||+++|++++. ++
T Consensus 168 tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~-ll 246 (374)
T PLN03032 168 NIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGV-AL 246 (374)
T ss_pred EecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcCeEE-EE
Confidence 689999999999999999999996 699999985444 323222 345567899999999999999988764 45
Q ss_pred ecC
Q psy2484 74 TQR 76 (98)
Q Consensus 74 ~r~ 76 (98)
+|+
T Consensus 247 ~r~ 249 (374)
T PLN03032 247 TRK 249 (374)
T ss_pred EEc
Confidence 554
No 10
>KOG0628|consensus
Probab=99.78 E-value=4e-20 Score=153.93 Aligned_cols=82 Identities=16% Similarity=0.254 Sum_probs=70.2
Q ss_pred CCcccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCC--CCCCccCccccccCccccCCCCCCCeeEEecCCC
Q psy2484 2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHS--PSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVP 78 (98)
Q Consensus 2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~--~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~~ 78 (98)
|.|||++.++|+|.+|..||+++|+|||||++ .|++.+|||.| ..|||.|||+..|||||+.+-+.|++..++....
T Consensus 242 t~GTT~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~ 321 (511)
T KOG0628|consen 242 TLGTTSSCAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTK 321 (511)
T ss_pred eecCccccccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCce
Confidence 78999999999999999999999999999998 57888899884 8999999999999999999998776555544434
Q ss_pred Ccccc
Q psy2484 79 PSGYL 83 (98)
Q Consensus 79 ~~~~l 83 (98)
...++
T Consensus 322 ~~~~~ 326 (511)
T KOG0628|consen 322 LSRAF 326 (511)
T ss_pred eeeee
Confidence 44433
No 11
>PRK02769 histidine decarboxylase; Provisional
Probab=99.76 E-value=6.9e-19 Score=141.03 Aligned_cols=75 Identities=17% Similarity=0.264 Sum_probs=60.3
Q ss_pred CCCcccccccCCChHHHHHHHHHcC---ceEEeecccchhhh-cCCC--CCCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484 1 MEIGSSLNGHVDNVSLLQEICAKYN---LWLHLRGHNLSSLA-LNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPART 74 (98)
Q Consensus 1 ~taGtt~~Ga~D~l~~i~~ic~~~~---lWlHVDga~~~al~-~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~ 74 (98)
.|+|||.+|++||+++|+++|++|| +|+||||+.++..+ +.+. .++..+.+||+++|+|||+++|++++.++++
T Consensus 166 ~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r 245 (380)
T PRK02769 166 ANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAK 245 (380)
T ss_pred EEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEe
Confidence 3789999999999999999999998 79999998554332 2222 3566668999999999999999888755444
Q ss_pred c
Q psy2484 75 Q 75 (98)
Q Consensus 75 r 75 (98)
+
T Consensus 246 ~ 246 (380)
T PRK02769 246 K 246 (380)
T ss_pred h
Confidence 3
No 12
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.75 E-value=8.2e-19 Score=142.98 Aligned_cols=75 Identities=11% Similarity=0.123 Sum_probs=61.5
Q ss_pred CCCcccccccCCChHHHHHHHHHc------CceEEeecccchhh---hcCCCC--CCCCccCccccccCccccCCCCCCC
Q psy2484 1 MEIGSSLNGHVDNVSLLQEICAKY------NLWLHLRGHNLSSL---ALNSHS--PSPLQPGHSVSLPLGTWLNLPLSLP 69 (98)
Q Consensus 1 ~taGtt~~Ga~D~l~~i~~ic~~~------~lWlHVDga~~~al---~~~~~~--~~gi~~ADS~t~d~HKwL~vP~~~~ 69 (98)
.|+|||.+|++||+++|+++|+++ |+|+||||+.++.. .+++.+ +. ++.+||+++|+|||++.|++++
T Consensus 192 ~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~-~~~~DSis~s~HK~~~~P~g~G 270 (431)
T TIGR01788 192 CILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR-LPRVKSINVSGHKYGLVYPGVG 270 (431)
T ss_pred EEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC-CCCceEEEECchhccCCCCCcE
Confidence 378999999999999999999999 99999999855433 245553 34 8999999999999999998887
Q ss_pred eeEEecC
Q psy2484 70 SPARTQR 76 (98)
Q Consensus 70 ~~ll~r~ 76 (98)
+++++++
T Consensus 271 ~l~~r~~ 277 (431)
T TIGR01788 271 WVIWRDE 277 (431)
T ss_pred EEEEeCh
Confidence 5555443
No 13
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.40 E-value=1.3e-13 Score=104.50 Aligned_cols=69 Identities=20% Similarity=0.350 Sum_probs=56.2
Q ss_pred CCcccccccCCChHHHHHHHHHcCceEEeecccchhhh-cCCC--CCCCCccCccccccCccccCCCCCCCe
Q psy2484 2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLA-LNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPS 70 (98)
Q Consensus 2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~-~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~ 70 (98)
+.+++.+|.+||+++|+++|++||+|+|||++.+.... .... +..+++.+||+++++||||+.|++++.
T Consensus 155 ~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~ 226 (345)
T cd06450 155 TAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSA 226 (345)
T ss_pred ecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHH
Confidence 56788999999999999999999999999998654443 2222 235667899999999999999977654
No 14
>KOG0630|consensus
Probab=99.39 E-value=1.1e-13 Score=117.87 Aligned_cols=79 Identities=27% Similarity=0.496 Sum_probs=72.6
Q ss_pred CCcccccccCCChHHHHHHHHHcC-ceEEeecccchhhhcCCC---CCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484 2 EIGSSLNGHVDNVSLLQEICAKYN-LWLHLRGHNLSSLALNSH---SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV 77 (98)
Q Consensus 2 taGtt~~Ga~D~l~~i~~ic~~~~-lWlHVDga~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~ 77 (98)
..|++.+|.+|.|.+|.|||++++ +|||+.|++.+++.+.+. ..+-.|+-|||++|..-|||+| +.+.|++.|+.
T Consensus 299 ~iGasi~GqnDmi~kildi~eahakfWLHasGhaiAALt~aepnnil~HV~eqldSMal~ialWLGiP-SaPiV~LHRPl 377 (838)
T KOG0630|consen 299 DIGASICGQNDMILKILDICEAHAKFWLHASGHAIAALTCAEPNNILGHVEEQLDSMALNIALWLGIP-SAPIVLLHRPL 377 (838)
T ss_pred eccchhhcchHHHHHHHHHHHHhhheeEeeccchhhheeecCcccchhHHHHHHhhccchhHHHhCCC-CCceEEeeccc
Confidence 479999999999999999999998 999999999999999986 4677899999999999999999 99999999987
Q ss_pred CCcc
Q psy2484 78 PPSG 81 (98)
Q Consensus 78 ~~~~ 81 (98)
+.+.
T Consensus 378 eg~a 381 (838)
T KOG0630|consen 378 EGSA 381 (838)
T ss_pred cccc
Confidence 6543
No 15
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=99.34 E-value=8.7e-13 Score=108.78 Aligned_cols=80 Identities=9% Similarity=-0.005 Sum_probs=58.2
Q ss_pred CCcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCC-CCCc--cCccccccCccccCCCCCCCeeEEecCCC
Q psy2484 2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSP-SPLQ--PGHSVSLPLGTWLNLPLSLPSPARTQRVP 78 (98)
Q Consensus 2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~-~gi~--~ADS~t~d~HKwL~vP~~~~~~ll~r~~~ 78 (98)
|.+|...|..||+++|+++|++||+|+|||++++.......... +|++ ++|++++++|||+.+|.. +++++.|+++
T Consensus 212 Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~e 290 (444)
T TIGR03531 212 TTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKAIKVGRVDAVVSSTDKNFMVPVG-GAIIYSFDEN 290 (444)
T ss_pred cCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhccccccCCCeEEEeCccCCCCCCC-EEEEEECCHH
Confidence 34455566899999999999999999999998774221111112 4543 689999999999999954 6677777655
Q ss_pred Cccc
Q psy2484 79 PSGY 82 (98)
Q Consensus 79 ~~~~ 82 (98)
....
T Consensus 291 l~~~ 294 (444)
T TIGR03531 291 FIQE 294 (444)
T ss_pred HHHH
Confidence 4433
No 16
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.06 E-value=2.6e-10 Score=87.30 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=53.8
Q ss_pred CcccccccCCChHHHHHHHHHcCceEEeecccchhhh-cCCC--CCC-CCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484 3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLA-LNSH--SPS-PLQPGHSVSLPLGTWLNLPLSLPSPARTQRV 77 (98)
Q Consensus 3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~-~~~~--~~~-gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~ 77 (98)
.+++.+|.++|+++|+++|+++|+|+|||++.++... ..+. .++ ....+||+++++|||+..|+.++. ++.+++
T Consensus 159 ~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~-~~~~~~ 236 (371)
T PRK13520 159 AGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGG-ILFRDE 236 (371)
T ss_pred cCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceE-EEEcCH
Confidence 4678899999999999999999999999997543321 1111 111 245689999999999988855654 454443
No 17
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.05 E-value=2.6e-10 Score=101.35 Aligned_cols=66 Identities=14% Similarity=0.011 Sum_probs=51.4
Q ss_pred CCcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCC
Q psy2484 2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLP 69 (98)
Q Consensus 2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~ 69 (98)
|.++|..+..||+++|+++|+++|+|+||||+...+++.-. ..|...||++++|+||||++|++.+
T Consensus 647 t~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~--~pg~~GADi~~~s~HK~f~~P~G~G 712 (954)
T PRK05367 647 TYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLA--RPGDIGADVSHLNLHKTFCIPHGGG 712 (954)
T ss_pred EcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCC--ChhhcCCCEEEecCcccCCCCcCCC
Confidence 56777734459999999999999999999998654433221 1244569999999999999998755
No 18
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.03 E-value=3.1e-10 Score=87.10 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=52.1
Q ss_pred CcccccccCCChHHHHHHHHHcCceEEeecccchhhh-cC----CC-CCC-CCccCccccccCccccCCCCCCCeeEE
Q psy2484 3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLA-LN----SH-SPS-PLQPGHSVSLPLGTWLNLPLSLPSPAR 73 (98)
Q Consensus 3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~-~~----~~-~~~-gi~~ADS~t~d~HKwL~vP~~~~~~ll 73 (98)
.+++.+|.++|+++|.++|+++|+|+|||++.+...+ +. .. .+. ....+||+++++|||+..|..++.+++
T Consensus 161 ~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~ 238 (373)
T TIGR03812 161 AGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILF 238 (373)
T ss_pred CCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEE
Confidence 4678899999999999999999999999998653321 11 00 111 123679999999999888866664443
No 19
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=98.91 E-value=2.4e-09 Score=71.87 Aligned_cols=69 Identities=12% Similarity=0.078 Sum_probs=51.9
Q ss_pred CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeE
Q psy2484 3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPA 72 (98)
Q Consensus 3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~l 72 (98)
..++.+|..+|+++|+++|+++|+|+++|++.++...-..........+|.++..+||||+.| +++.++
T Consensus 100 ~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s~~K~~~~~-~~G~l~ 168 (170)
T cd01494 100 PNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLGGE-GGGVVI 168 (170)
T ss_pred cCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEEEcccccCCC-ceEEEE
Confidence 446678999999999999999999999999754333322111122356999999999999997 776543
No 20
>PLN02651 cysteine desulfurase
Probab=98.83 E-value=3.6e-09 Score=82.21 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=50.1
Q ss_pred CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484 3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r 75 (98)
..+..+|.+.|+++|.++|+++|+|+|||++-++... + ..++.+ .+|.+++++|||+ -|.+++.+++.+
T Consensus 146 ~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~-~-~~~~~~-~~D~~~~s~hK~~-gp~G~g~l~v~~ 214 (364)
T PLN02651 146 AVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKI-P-VDVDDL-GVDLMSISGHKIY-GPKGVGALYVRR 214 (364)
T ss_pred CCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCc-c-cCcccC-CCCEEEechhhhC-CCCceEEEEEcC
Confidence 3456799999999999999999999999997443321 1 112222 2799999999994 575776544443
No 21
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=98.80 E-value=8.4e-09 Score=79.29 Aligned_cols=70 Identities=9% Similarity=0.057 Sum_probs=52.5
Q ss_pred CcccccccCCChHHHHHHHHHcCceEEeecccc-hhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484 3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNL-SSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~-~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
...+.+|.+.|+++|.++|+++|+|++||++-+ +..-+. + ....+|.++++.||||+.|.+++.+++.++
T Consensus 145 ~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~---~-~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~ 215 (376)
T TIGR01977 145 HASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPID---M-TELAIDMLAFTGHKGLLGPQGTGGLYIREG 215 (376)
T ss_pred CCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCC---c-hhcCCCEEEecccccccCCCCceEEEEcCC
Confidence 456679999999999999999999999999643 332221 1 124689999999999999966654444443
No 22
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=98.79 E-value=7.4e-09 Score=84.97 Aligned_cols=61 Identities=20% Similarity=0.069 Sum_probs=47.5
Q ss_pred ccccC-CChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCC
Q psy2484 7 LNGHV-DNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLP 69 (98)
Q Consensus 7 ~~Ga~-D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~ 69 (98)
.+|.+ +|+++|+++|+++|.|++||++...++.- .. -.|-..||+++.++||||++|++++
T Consensus 219 ~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g-~~-~~~~~GaD~~~~~~hK~l~~P~g~G 280 (481)
T PRK04366 219 TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILG-KA-RPGDMGFDVVHLNLHKTFSTPHGGG 280 (481)
T ss_pred CccccchHHHHHHHHHHHcCCEEEEEecChhhhcc-cC-CccccCCCEEEEechhhcCCCCCCC
Confidence 57887 69999999999999999999986444221 11 1234458999999999999998764
No 23
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=98.78 E-value=8.8e-09 Score=91.90 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=52.9
Q ss_pred CCcccccccCCC-hHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC
Q psy2484 2 EIGSSLNGHVDN-VSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL 68 (98)
Q Consensus 2 taGtt~~Ga~D~-l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~ 68 (98)
|.+++ +|.++| +++|+++|+++|.|++|||+...++..... .|-..||.+++|+||||+.|.+.
T Consensus 635 T~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~--Pg~~GaDi~~~s~HKtf~~P~G~ 699 (939)
T TIGR00461 635 TYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTS--PGDLGADVCHLNLHKTFCIPHGG 699 (939)
T ss_pred EeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCC--ccccCCCEEEecCCccCCCCCCC
Confidence 45676 799988 999999999999999999987555443332 36677999999999999999876
No 24
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=98.76 E-value=9.1e-09 Score=81.25 Aligned_cols=70 Identities=10% Similarity=0.143 Sum_probs=51.6
Q ss_pred CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484 3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
..++.+|.+.|+++|.++|+++|+|+|||++-+.... + ..++. ..+|.+++++||+++ |.+++.+++.++
T Consensus 150 ~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~-~-~~~~~-~~~D~~~~s~~K~~g-p~G~G~l~~~~~ 219 (402)
T TIGR02006 150 HVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKI-P-INVNE-LKVDLMSISGHKIYG-PKGIGALYVRRK 219 (402)
T ss_pred CCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCc-c-cCccc-cCCCEEEEehhhhcC-CCceEEEEEccC
Confidence 3456789999999999999999999999997433221 2 11222 358999999999887 658775555543
No 25
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=98.71 E-value=1.6e-08 Score=77.87 Aligned_cols=70 Identities=9% Similarity=0.076 Sum_probs=50.6
Q ss_pred CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484 3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV 77 (98)
Q Consensus 3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~ 77 (98)
..++.+|.+.|+++|.++|+++|+|++||++.+.+.. + ..++ ...+|.++.+.|||++ |.+++. ++.+++
T Consensus 146 ~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~-~-~~~~-~~~~D~~~~s~~K~~g-p~g~g~-l~~~~~ 215 (353)
T TIGR03235 146 HVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKI-T-VDLS-ADRIDLISCSGHKIYG-PKGIGA-LVIRKR 215 (353)
T ss_pred cccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCc-c-cccc-ccCCCEEEeehhhcCC-CCceEE-EEEccC
Confidence 4567899999999999999999999999997333222 1 1111 1359999999999976 537654 444443
No 26
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=98.70 E-value=2e-08 Score=77.28 Aligned_cols=67 Identities=10% Similarity=0.035 Sum_probs=49.6
Q ss_pred cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484 4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r 75 (98)
.++.+|.++|+++|.++|++||+|||||++...... +.. ... ..+|+++++.|||++.+ +++ +++.+
T Consensus 148 ~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~-~~~-~~~-~~~d~~~~s~~K~~~~~-g~g-~~~~~ 214 (373)
T cd06453 148 VSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHM-PVD-VQD-LGCDFLAFSGHKMLGPT-GIG-VLYGK 214 (373)
T ss_pred cccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCce-eee-ccc-cCCCEEEeccccccCCC-CcE-EEEEc
Confidence 456799999999999999999999999996433222 211 111 24799999999999986 765 44444
No 27
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=98.61 E-value=5.1e-08 Score=75.95 Aligned_cols=67 Identities=9% Similarity=0.044 Sum_probs=49.5
Q ss_pred cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484 4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPART 74 (98)
Q Consensus 4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~ 74 (98)
-+..+|.+.|+++|.++|+++|+|+|||++...... + .... -..+|.+++++|||++.| +++.++++
T Consensus 149 ~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~-~-~~~~-~~~~D~~~~s~~K~~gp~-G~g~l~vr 215 (382)
T TIGR03403 149 ANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKI-P-VDVQ-KAGVDFLSFSAHKFHGPK-GVGGLYIR 215 (382)
T ss_pred ccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCC-c-cCcc-ccCCCEEEEcchhhCCCC-ceEEEEEC
Confidence 456799999999999999999999999997432211 1 1111 135899999999998866 87654443
No 28
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=98.49 E-value=1.3e-07 Score=73.38 Aligned_cols=57 Identities=16% Similarity=0.124 Sum_probs=42.1
Q ss_pred ccccCCCh-HHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC
Q psy2484 7 LNGHVDNV-SLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS 67 (98)
Q Consensus 7 ~~Ga~D~l-~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~ 67 (98)
.+|.++|+ ++|+++|++||+|++||++.++...... .+...+|.++.+.|||+ .|++
T Consensus 170 ~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~---~~~~~~d~~~~s~~K~~-~p~g 227 (398)
T cd00613 170 TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKP---PGEYGADIVVGNLQKTG-VPHG 227 (398)
T ss_pred CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCC---hHHcCCCEEEeeccccC-CCCC
Confidence 46888885 9999999999999999995322111111 12335899999999999 8754
No 29
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=98.48 E-value=2.1e-07 Score=72.68 Aligned_cols=67 Identities=9% Similarity=0.001 Sum_probs=49.2
Q ss_pred CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484 3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR 73 (98)
Q Consensus 3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll 73 (98)
..++.+|...|+++|.++|++||+|++||++.+... .+ ..+... .+|.++.++|||++.+ +++.+++
T Consensus 167 ~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~-~~-~~~~~~-~~d~~~~s~~K~~gp~-G~g~l~~ 233 (403)
T TIGR01979 167 HVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPH-MP-VDVQAL-DCDFYVFSGHKMYGPT-GIGVLYG 233 (403)
T ss_pred cccccccccCCHHHHHHHHHHcCCEEEEEchhhcCc-cc-cCcccc-CCCEEEEecccccCCC-CceEEEE
Confidence 346778999999999999999999999999754332 11 112222 4899999999999844 7654433
No 30
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=98.43 E-value=6.2e-07 Score=72.74 Aligned_cols=70 Identities=20% Similarity=0.152 Sum_probs=51.8
Q ss_pred ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484 5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
..++|..-|+++|+++|+++|.+||||++-+++++-....-..+..+|-++...||||+=|.+ .++++++
T Consensus 190 ~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP~G--g~l~~~~ 259 (452)
T PTZ00094 190 ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRS--GLIFYRK 259 (452)
T ss_pred CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCCCc--eEEEEec
Confidence 457899999999999999999999999974444432221112344799999999999988943 4555554
No 31
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=98.39 E-value=4.6e-07 Score=69.35 Aligned_cols=67 Identities=10% Similarity=-0.065 Sum_probs=48.8
Q ss_pred cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484 4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR 73 (98)
Q Consensus 4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll 73 (98)
..+.+|.+.|+++|+++|+++|+|+++|++..... .+ .... -..+|-++.++||||+.|.+++.+++
T Consensus 133 ~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~-~~-~~~~-~~~~d~~~~s~~K~l~~p~g~G~l~~ 199 (356)
T cd06451 133 NETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGG-EP-FRMD-EWGVDVAYTGSQKALGAPPGLGPIAF 199 (356)
T ss_pred cCCCcccccCHHHHHHHHHhcCCEEEEeeehhccC-cc-cccc-ccCccEEEecCchhccCCCCcceeEE
Confidence 45669999999999999999999999999632211 11 1111 12468889999999999977665444
No 32
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=98.38 E-value=3.9e-07 Score=70.76 Aligned_cols=67 Identities=10% Similarity=0.006 Sum_probs=48.7
Q ss_pred cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484 4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPART 74 (98)
Q Consensus 4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~ 74 (98)
-+..+|.+.|+++|+++|+++|+|+|||++...... + ..+.. ..+|.+++++||+++ |.+++.+.+.
T Consensus 145 ~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~-~-~~~~~-~~~D~~~~s~~K~~g-p~G~g~l~v~ 211 (379)
T TIGR03402 145 ANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKI-P-IDLKE-MNIDMLSLSGHKLHG-PKGVGALYIR 211 (379)
T ss_pred ccCCeeecccHHHHHHHHHHcCCEEEEECccccccc-c-cCccc-CCCCEEEEcHHHcCC-CCceEEEEEC
Confidence 356799999999999999999999999996443211 1 11221 358999999999555 6587654443
No 33
>PRK14012 cysteine desulfurase; Provisional
Probab=98.36 E-value=5.1e-07 Score=71.27 Aligned_cols=69 Identities=12% Similarity=0.149 Sum_probs=50.0
Q ss_pred cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484 4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
-+..+|.+.|+++|.++|+++|+|++||++-+.... + ..+.. ..+|.+++++||+++ |.+++.+++.++
T Consensus 153 ~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~-~-~~~~~-~~~D~~~~s~~K~~g-p~g~G~l~~~~~ 221 (404)
T PRK14012 153 VNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKV-P-IDLSK-LKVDLMSFSAHKIYG-PKGIGALYVRRK 221 (404)
T ss_pred cCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCc-c-cCccc-CCCCEEEEehhhccC-CCceEEEEEecC
Confidence 345689999999999999999999999997433221 1 11111 248999999999776 547776656554
No 34
>PRK02948 cysteine desulfurase; Provisional
Probab=98.35 E-value=4.9e-07 Score=70.28 Aligned_cols=67 Identities=13% Similarity=0.043 Sum_probs=49.0
Q ss_pred CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484 3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR 73 (98)
Q Consensus 3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll 73 (98)
...+.+|.+.|+++|.++|+++|+|+|||++...+. .+ ..+.. ..+|.++.++||+++.+ +++.+++
T Consensus 146 ~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~-~~-~~~~~-~~~d~~~~s~~K~~gp~-G~G~l~~ 212 (381)
T PRK02948 146 HANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGK-LP-IDVFE-MGIDSLSVSAHKIYGPK-GVGAVYI 212 (381)
T ss_pred CCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccc-cc-cCccc-CCCCEEEecHHhcCCCC-cEEEEEE
Confidence 356789999999999999999999999998532221 11 11111 24899999999999865 8764443
No 35
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=98.30 E-value=8.4e-07 Score=70.06 Aligned_cols=66 Identities=8% Similarity=0.021 Sum_probs=49.2
Q ss_pred ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCc-cCccccccCccccCCCCCCCeeEEec
Q psy2484 5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQ-PGHSVSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~-~ADS~t~d~HKwL~vP~~~~~~ll~r 75 (98)
++.+|.+.|+++|+++|++||+++|||++.+... ++ ..+.+ .+|-++...||||+.|...+ +++.+
T Consensus 168 ~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~-~~---~~~~~~g~D~~~~s~~K~l~~~~~~G-~l~~~ 234 (387)
T PRK09331 168 DGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGR-MP---VDGKKLGADFIVGSGHKSMAASAPSG-VLATT 234 (387)
T ss_pred CCCCcccccHHHHHHHHHHcCCEEEEECCcccCC-cC---CCHHHcCCCEEEeeCcccccCCCCEE-EEEEC
Confidence 4569999999999999999999999999755332 12 11222 37999999999999884554 44444
No 36
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=98.25 E-value=3.2e-07 Score=69.98 Aligned_cols=70 Identities=11% Similarity=0.012 Sum_probs=51.1
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC-CCCC-CccCccccccCccccCCCCCCCeeEEecC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-SPSP-LQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~~~g-i~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
+.+|.+.|+++|+++|+++|++++||.+.++.+.+.+. .... ...+|-++.+.||+|+-| ..++++..+.
T Consensus 164 ~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~div~~S~hK~l~g~-~~~~~l~~~~ 235 (294)
T cd00615 164 TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQSTHKTLPAL-TQGSMIHVKG 235 (294)
T ss_pred CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcCCcEEEEchhcccchH-hHHHHHHhCC
Confidence 45899999999999999999999999987654433322 2221 236899999999999766 3344544444
No 37
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=98.24 E-value=1.7e-06 Score=67.21 Aligned_cols=70 Identities=10% Similarity=0.041 Sum_probs=49.5
Q ss_pred CCcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484 2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r 75 (98)
|.-++.+|...|+++|+++|+++|.|++||++-..+.+ + ..++-+ .+|=++.+.|| |+-|.+++.+.+.+
T Consensus 146 ~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~-~-id~~~~-~~D~~~~s~~K-l~gp~G~g~l~v~~ 215 (371)
T PF00266_consen 146 SHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCV-P-IDLDEL-GADFLVFSSHK-LGGPPGLGFLYVRP 215 (371)
T ss_dssp ESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTS-S---TTTT-TESEEEEESTS-TTSSSTEEEEEEEH
T ss_pred ecccccccEEeeeceehhhhhccCCceeEechhccccc-c-cccccc-ccceeeecccc-cCCCCchhhheehh
Confidence 34567899999999999999999999999997443332 1 212222 47999999999 66675775444443
No 38
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=98.19 E-value=3.2e-06 Score=66.95 Aligned_cols=68 Identities=6% Similarity=-0.015 Sum_probs=49.4
Q ss_pred cccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484 4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
-+..+|.+-|+++|+++|+++|++++||++ +.+.+-+. ++. ..+|-++...||||+-|.+ +.+++.++
T Consensus 180 v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id---~~~-~gvD~~~~s~hK~l~g~pG-~~l~v~~~ 248 (406)
T TIGR01814 180 VQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLD---LHD-WGVDFACWCTYKYLNAGPG-AGAFVHEK 248 (406)
T ss_pred cccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccc---ccc-CCCCEEEEcCccccCCCCC-eEEEEehh
Confidence 356789999999999999999999999996 43333221 221 2479999999999976646 44444443
No 39
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=98.17 E-value=2.5e-06 Score=70.27 Aligned_cols=62 Identities=10% Similarity=0.176 Sum_probs=47.7
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchh-hhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSS-LALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR 73 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~a-l~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll 73 (98)
-+|.+-|+++|++||+++|++||||+.=..+ +-+.-..+ .+|.+++..||.-|.- +++++++
T Consensus 153 E~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~----~vD~ls~SaHK~~Gpk-GiGaLyv 215 (386)
T COG1104 153 ETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEEL----GVDLLSFSAHKFGGPK-GIGALYV 215 (386)
T ss_pred CeeecccHHHHHHHHHHcCCeEEEehhhhcCceecccccc----CcceEEeehhhccCCC-ceEEEEE
Confidence 4799999999999999999999999953222 22221111 2999999999999988 9986655
No 40
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=98.16 E-value=3.4e-06 Score=75.99 Aligned_cols=72 Identities=10% Similarity=0.050 Sum_probs=56.9
Q ss_pred CCcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC-----CCeeEEec
Q psy2484 2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS-----LPSPARTQ 75 (98)
Q Consensus 2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~-----~~~~ll~r 75 (98)
|.+++..|.++|+++|.++|+++|..++|||+...++..... .+--.+|-++++.||||+.|.+ ++.+.+.+
T Consensus 673 t~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~--p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~ 749 (993)
T PLN02414 673 TYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTS--PGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK 749 (993)
T ss_pred ECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCC--ccccCCCEEEecCCccCCcCcccCCCCeeeEEEch
Confidence 567899999999999999999999999999987665533322 2344599999999999999975 66554444
No 41
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=98.16 E-value=7.4e-07 Score=67.30 Aligned_cols=56 Identities=23% Similarity=0.202 Sum_probs=40.6
Q ss_pred cCCChHHHHHHHHHcCceEEeecccchhh-hcCCCCC-CCCccCccccccCccccCCC
Q psy2484 10 HVDNVSLLQEICAKYNLWLHLRGHNLSSL-ALNSHSP-SPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 10 a~D~l~~i~~ic~~~~lWlHVDga~~~al-~~~~~~~-~gi~~ADS~t~d~HKwL~vP 65 (98)
..+++++|+++|++||+|++||++..... ....... .....+|.++.++|||++.|
T Consensus 144 ~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~ 201 (338)
T cd06502 144 PLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAP 201 (338)
T ss_pred CHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCc
Confidence 46889999999999999999999643221 1111111 11246899999999999999
No 42
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=98.16 E-value=4.3e-06 Score=69.31 Aligned_cols=72 Identities=17% Similarity=0.108 Sum_probs=52.5
Q ss_pred CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484 3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
+|.+++|-.-|+++|+++|+++|.||+||++=+++++-......-++.+|-++...||||+-|.+ ++++.++
T Consensus 189 ~~~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~GP~G--g~I~~~~ 260 (475)
T PLN03226 189 AGASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPRG--GMIFFRK 260 (475)
T ss_pred EecCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCcccccCCCc--eEEEEch
Confidence 35667888889999999999999999999964343332222112245799999999999977854 4555554
No 43
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=3.2e-06 Score=69.02 Aligned_cols=70 Identities=13% Similarity=0.160 Sum_probs=53.3
Q ss_pred CCcccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484 2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
|.-+.++|.+-|+++|+++|+++|+|+=|||+ +...+-+. + .--.+|=+++++||||+=|.+++. |..|+
T Consensus 169 s~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~id---v-~~l~~Df~afsgHKwl~gP~GiGv-Ly~r~ 239 (405)
T COG0520 169 SHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPID---V-QELGCDFLAFSGHKWLLGPTGIGV-LYVRK 239 (405)
T ss_pred ECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCC---c-hhcCCCEEEEcccccccCCCceEE-EEEch
Confidence 34577899999999999999999999999997 43333221 1 123489999999999999977764 44443
No 44
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=98.08 E-value=3.9e-06 Score=65.07 Aligned_cols=66 Identities=12% Similarity=0.123 Sum_probs=48.6
Q ss_pred ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCc-cCccccccCccccCCCCCCCeeEEec
Q psy2484 5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQ-PGHSVSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~-~ADS~t~d~HKwL~vP~~~~~~ll~r 75 (98)
++.+|..+|+++|.++|+++|+|++||++..... .+ . .+.+ .+|-++...||||+.|...+ +++.+
T Consensus 149 ~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~-~~-~--~~~~~~~d~~~~s~~K~l~~~~~~G-~l~~~ 215 (361)
T cd06452 149 DGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGR-MP-V--SGKELGADFIVGSGHKSMAASAPIG-VLATT 215 (361)
T ss_pred CCCCeeeccHHHHHHHHHHcCCeEEEECCcccCC-cC-C--CHHHcCCCEEEecCCccccCCCCeE-EEEEC
Confidence 4568999999999999999999999999865322 11 1 1111 36899999999999885454 44443
No 45
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=98.07 E-value=5.6e-06 Score=65.28 Aligned_cols=65 Identities=5% Similarity=-0.087 Sum_probs=47.4
Q ss_pred ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484 5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR 73 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll 73 (98)
+..+|.+-|+++|.++|+++|+|++||++...... +..++ -..+|-++.+.||+++.+ +++.+++
T Consensus 174 ~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~--~~~~~-~~~~D~~~~s~~K~~gp~-G~G~l~~ 238 (406)
T PRK09295 174 SNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHH--PVDVQ-ALDCDFYVFSGHKLYGPT-GIGILYV 238 (406)
T ss_pred hhcccccCCHHHHHHHHHHcCCEEEEEcccccCcc--ccCch-hcCCCEEEeehhhccCCC-CcEEEEE
Confidence 46789999999999999999999999997432211 11122 124799999999988744 7764433
No 46
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=98.04 E-value=7e-06 Score=63.44 Aligned_cols=67 Identities=3% Similarity=-0.093 Sum_probs=48.9
Q ss_pred cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484 4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR 73 (98)
Q Consensus 4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll 73 (98)
..+.+|..-|+++|.++|++||+++.||+.....- .+ ..++.+ .+|-++...||||+-|.+.+.+++
T Consensus 138 ~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~-~~-~~~~~~-~~D~~~~s~~K~l~~p~G~G~l~~ 204 (363)
T TIGR02326 138 CETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGG-IP-IDIAEL-HIDYLISSANKCIQGVPGFGFVIA 204 (363)
T ss_pred ecCCccccCcHHHHHHHHHHcCCEEEEEccccccC-cc-cchhhc-CccEEEecCccccccCCcceEEEE
Confidence 46779999999999999999999999999532111 11 112222 379999999999987757754433
No 47
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=98.02 E-value=9e-06 Score=63.76 Aligned_cols=63 Identities=6% Similarity=-0.006 Sum_probs=46.9
Q ss_pred ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCee
Q psy2484 5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSP 71 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ 71 (98)
...+|.+-|+++|.++|+++|++++||++.+.... + ..+..+ .+|-++.++||+++.+ +++.+
T Consensus 170 ~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~-~-~~~~~~-~~d~~~~s~~K~~gp~-G~G~l 232 (401)
T PRK10874 170 SNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHF-P-ADVQAL-DIDFYAFSGHKLYGPT-GIGVL 232 (401)
T ss_pred cccccCcCCHHHHHHHHHHcCCEEEEECCcccccc-c-CCchhc-CCCEEEEecccccCCC-ccEEE
Confidence 45789999999999999999999999997543221 2 112222 3899999999988855 77543
No 48
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=98.01 E-value=7.1e-06 Score=64.28 Aligned_cols=62 Identities=8% Similarity=0.037 Sum_probs=45.9
Q ss_pred ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCe
Q psy2484 5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPS 70 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~ 70 (98)
+..+|.+-|+++|.++|+++|+|++||++.+.... + ..+..+ .+|-+++.+||+++.+ +++.
T Consensus 167 ~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~-~-~~~~~~-~~d~~~~s~~K~~gp~-G~G~ 228 (398)
T TIGR03392 167 SNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHG-P-PDVQAL-DIDFYAFSGHKLYGPT-GIGV 228 (398)
T ss_pred cccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCC-C-CChhhc-CCCEEEEecccccCCC-ceEE
Confidence 45689999999999999999999999997543221 1 112222 3788999999988755 7653
No 49
>PLN02409 serine--glyoxylate aminotransaminase
Probab=97.98 E-value=8.8e-06 Score=64.81 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=49.3
Q ss_pred ccccccCCChHHHHHH--HHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484 5 SSLNGHVDNVSLLQEI--CAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR 73 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~i--c~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll 73 (98)
++.+|.+-|+++|.++ |+++|+|+.||+....+. .+ ..++. -.+|-++...||||+.|.+++.+.+
T Consensus 147 ~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~-~~-id~~~-~~~D~~~~s~~K~l~~P~G~G~l~~ 214 (401)
T PLN02409 147 ETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGA-LD-FRMDE-WGVDVALTGSQKALSLPTGLGIVCA 214 (401)
T ss_pred cccccccCCHHHHHHHHhhhccCcEEEEEcccccCC-cc-ccccc-cCccEEEEcCccccCcCCCcceeEE
Confidence 5679999999999999 999999999999643211 11 11111 1478999999999999867765443
No 50
>PLN02721 threonine aldolase
Probab=97.98 E-value=4.2e-06 Score=63.54 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=39.2
Q ss_pred CChHHHHHHHHHcCceEEeecccch-hhhcCCCC-CCCCccCccccccCccccCCCC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNLS-SLALNSHS-PSPLQPGHSVSLPLGTWLNLPL 66 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~~-al~~~~~~-~~gi~~ADS~t~d~HKwL~vP~ 66 (98)
+++++|+++|++||+|++||++... +....... ..-.+.+|++++..||||+.|.
T Consensus 158 ~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~ 214 (353)
T PLN02721 158 EYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPV 214 (353)
T ss_pred HHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCce
Confidence 3489999999999999999996321 11111121 1224578999999999999883
No 51
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=97.98 E-value=1.2e-05 Score=63.86 Aligned_cols=65 Identities=6% Similarity=-0.099 Sum_probs=46.7
Q ss_pred ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484 5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR 73 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll 73 (98)
+..+|.+-|+++|.++|+++|+|++||++..... .+ ..++.. .+|-++.+.||+++.+ +++.+++
T Consensus 183 ~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~-~~-~~~~~~-~~d~~~~s~~K~~gp~-G~G~l~~ 247 (424)
T PLN02855 183 SNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPH-MP-VDVQTL-GADFLVASSHKMCGPT-GIGFLWG 247 (424)
T ss_pred cccccccCCHHHHHHHHHHcCCEEEEEhhhhcCC-cC-CCchhc-CCCEEEeecccccCCC-ccEEEEE
Confidence 4568999999999999999999999999753221 11 112211 3699999999987744 7654333
No 52
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=97.97 E-value=7.1e-06 Score=63.84 Aligned_cols=65 Identities=5% Similarity=-0.041 Sum_probs=46.1
Q ss_pred cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484 4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR 73 (98)
Q Consensus 4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll 73 (98)
-+..+|.+.|+++|.++|++||+|++||++-.... .+ ..+. -..+|-++...|||++.+ .+.+++
T Consensus 165 ~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~-~~-~~~~-~~~~d~~~~s~~K~~g~~--~G~l~~ 229 (397)
T TIGR01976 165 ASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPH-GL-IDVQ-ATGADFLTCSAYKFFGPH--MGILWG 229 (397)
T ss_pred CCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccc-cC-CCHH-HcCCCEEEEechhhcCCc--eEEEEE
Confidence 45679999999999999999999999999632111 11 1111 124789999999999855 444333
No 53
>KOG1549|consensus
Probab=97.93 E-value=1.3e-05 Score=66.83 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=47.6
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r 75 (98)
...|..-|++||..+|+++|+-+|+|++=+-..+- ..++-+ .+|=++++.|||+|-| ++++..++|
T Consensus 192 n~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~--vDV~el-n~D~~s~s~HK~ygp~-~iGaLYvr~ 257 (428)
T KOG1549|consen 192 NEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIP--VDVQEL-NADFLSISAHKIYGPP-GIGALYVRR 257 (428)
T ss_pred cCccccccHHHHHHHhCcCCcEEEeehhhhcCCcc--ccHHHc-CchheeeecccccCCC-cceEEEEcc
Confidence 34788999999999999999999999963222211 111111 3799999999999999 765444443
No 54
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=97.89 E-value=1.4e-05 Score=60.37 Aligned_cols=67 Identities=7% Similarity=0.009 Sum_probs=46.5
Q ss_pred ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484 5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r 75 (98)
.+.+|...|+++|.++|++||+|++||+..... ..+ ..+... ..|.+...+||||+-|.+++ +++.+
T Consensus 135 ~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g-~~~-~~~~~~-~~d~~~~s~~K~l~~~~G~g-~~~~~ 201 (355)
T TIGR03301 135 ETTTGILNPLEAIAKVARSHGAVLIVDAMSSFG-AIP-IDIEEL-DVDALIASANKCLEGVPGFG-FVIAR 201 (355)
T ss_pred CCcccchhHHHHHHHHHHHcCCEEEEEeccccC-Ccc-cchhhc-CccEEEecCCcccccCCcee-EEEEC
Confidence 356799999999999999999999999842211 111 112211 47899999999986553775 44433
No 55
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=97.87 E-value=2.1e-06 Score=67.21 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=44.5
Q ss_pred CCChHHHHHHHHHcCceEEeecccchhhh--cCCCCCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGHNLSSLA--LNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV 77 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga~~~al~--~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~ 77 (98)
.+.|++|+++|++||+.+|+||+=++-.+ +....-+-.+.+|++++.+.|-++.| .+++++.+++
T Consensus 144 ~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~--~Gavl~~~~~ 210 (290)
T PF01212_consen 144 LEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIAAGADSVSFGGTKNGGAP--GGAVLAGNKE 210 (290)
T ss_dssp HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SS--SEEEEEESHH
T ss_pred HHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHhhhCCEEEEEEEcccccc--cceEEEechH
Confidence 47889999999999999999997322111 11111123377999999999999999 3566666543
No 56
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=97.86 E-value=4.1e-05 Score=61.80 Aligned_cols=70 Identities=19% Similarity=0.130 Sum_probs=50.1
Q ss_pred cccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484 4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
+++++|..=|+++|.++|++||++|+||++ +.+..... .....+..+|-++...||||+-|. +.+++.++
T Consensus 175 ~~~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g-~~~~~~~~~Di~~~s~~K~l~g~~--GG~v~~~~ 245 (416)
T PRK13034 175 GFSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAG-EHPNPFPHAHVVTTTTHKTLRGPR--GGMILTND 245 (416)
T ss_pred CCCccccccCHHHHHHHHHHcCCEEEEeCcccccCcccC-CCCCCCCCceEEEEeCcccCCCCC--CeEEEECc
Confidence 345677777999999999999999999996 33332222 222234569999999999998783 44555544
No 57
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=97.86 E-value=2.2e-05 Score=59.42 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=44.8
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CC-CCccCccccccCccccCCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PS-PLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~-gi~~ADS~t~d~HKwL~vP 65 (98)
..+|...|+++|+++|+++|+++++|++.+....-+... .. ....+|.++...||+++.+
T Consensus 143 ~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 207 (349)
T cd06454 143 SMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAV 207 (349)
T ss_pred cCCCCccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhccc
Confidence 468999999999999999999999999754322211111 11 2346788889999999987
No 58
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=97.83 E-value=4.4e-05 Score=59.65 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=46.8
Q ss_pred ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484 5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
.+++|...|+++|+++|++||+|+++|++....+........-++.+|.++..+||||.-| .. +.++.++
T Consensus 169 ~~~~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~~~dv~~~s~sK~l~G~-~g-g~i~~~~ 238 (402)
T cd00378 169 ASAYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGP-RG-GLILTRK 238 (402)
T ss_pred CcccCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCcccCCcEEEeccccCCCCC-Cc-eEEEecc
Confidence 3456777899999999999999999999743333322211111225688899999999445 33 3445544
No 59
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=97.82 E-value=4.2e-05 Score=58.10 Aligned_cols=68 Identities=10% Similarity=0.036 Sum_probs=44.2
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
.+|...|+++|.++|+++|+++.+|++-.................+.+.+..+||++.+ .+.+++.++
T Consensus 115 ~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~K~~~~~--~gg~~~~~~ 182 (352)
T cd00616 115 LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHPTKNLTTG--EGGAVVTND 182 (352)
T ss_pred CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcCCCCCCCccc--CceEEEECC
Confidence 57889999999999999999999999643222221111211223445555677999666 345566654
No 60
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=97.81 E-value=5.3e-05 Score=56.33 Aligned_cols=62 Identities=13% Similarity=0.016 Sum_probs=42.4
Q ss_pred cccccccCCChHHHH---HHHHHcCceEEeecccchhhhcCCCC----CCCCccCccccccCccccCCC
Q psy2484 4 GSSLNGHVDNVSLLQ---EICAKYNLWLHLRGHNLSSLALNSHS----PSPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 4 Gtt~~Ga~D~l~~i~---~ic~~~~lWlHVDga~~~al~~~~~~----~~gi~~ADS~t~d~HKwL~vP 65 (98)
.+..+|.+.|++++. ++|+++|+|++||++.++........ ..+....|-+....||+++.+
T Consensus 141 ~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~ 209 (350)
T cd00609 141 PNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLP 209 (350)
T ss_pred CCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCc
Confidence 566789998866665 89999999999999754333222221 122333566677899999976
No 61
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=97.74 E-value=3e-05 Score=64.97 Aligned_cols=65 Identities=5% Similarity=0.005 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHcCceEEeecc--cchhhhcCCC--CCCC----------CccCccccccCccccCCCCCCCeeEEecCC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGH--NLSSLALNSH--SPSP----------LQPGHSVSLPLGTWLNLPLSLPSPARTQRV 77 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga--~~~al~~~~~--~~~g----------i~~ADS~t~d~HKwL~vP~~~~~~ll~r~~ 77 (98)
+++++|+++|++||+.+|.||+ .+.+.++.++ ...+ .+.||+++...||-.++| .++++..+++
T Consensus 191 ~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~--~GG~l~~~d~ 268 (450)
T TIGR02618 191 ANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVN--IGGFLCMNDD 268 (450)
T ss_pred HHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCC--CceEEEeCCH
Confidence 7899999999999999999996 4456665433 1222 456999999999999999 4778887775
Q ss_pred C
Q psy2484 78 P 78 (98)
Q Consensus 78 ~ 78 (98)
+
T Consensus 269 ~ 269 (450)
T TIGR02618 269 E 269 (450)
T ss_pred H
Confidence 3
No 62
>KOG1383|consensus
Probab=97.72 E-value=5.3e-05 Score=64.07 Aligned_cols=77 Identities=13% Similarity=0.082 Sum_probs=60.1
Q ss_pred CCCcccccccCCChHHHHHHHHH-cCceEEeecccchhhh----cCCCCCC-CCccCccccccCccccCCCCCCCeeEEe
Q psy2484 1 MEIGSSLNGHVDNVSLLQEICAK-YNLWLHLRGHNLSSLA----LNSHSPS-PLQPGHSVSLPLGTWLNLPLSLPSPART 74 (98)
Q Consensus 1 ~taGtt~~Ga~D~l~~i~~ic~~-~~lWlHVDga~~~al~----~~~~~~~-gi~~ADS~t~d~HKwL~vP~~~~~~ll~ 74 (98)
|.+|++-+|.+||+++|.++..+ |++=+|||++-|+..+ ..+.+++ +.-..-|++.|.||.=.+|-+. ++.++
T Consensus 224 ~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~-~~vl~ 302 (491)
T KOG1383|consen 224 GSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAGS-SWVLY 302 (491)
T ss_pred EEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccccccCCCCceeEeeccceeeeeecCc-EEEEE
Confidence 57899999999999999999998 9999999998554443 1222322 5666789999999999999454 56777
Q ss_pred cCCC
Q psy2484 75 QRVP 78 (98)
Q Consensus 75 r~~~ 78 (98)
|.++
T Consensus 303 r~k~ 306 (491)
T KOG1383|consen 303 RNKE 306 (491)
T ss_pred cccc
Confidence 7653
No 63
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=97.71 E-value=6e-05 Score=58.23 Aligned_cols=66 Identities=5% Similarity=-0.034 Sum_probs=47.4
Q ss_pred ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484 5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR 73 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll 73 (98)
.+.+|...|+++|.++|+++|+++.||++..... .+ ..+... ..|-++...||||+-|.+++.+++
T Consensus 141 ~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~-~~-~~~~~~-~~d~~v~s~~K~l~g~~G~G~l~~ 206 (368)
T PRK13479 141 ETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGA-IP-IDIAEL-GIDALISSANKCIEGVPGFGFVIA 206 (368)
T ss_pred cCccccccCHHHHHHHHHHcCCEEEEEcccccCC-cc-cccccc-CceEEEecCccccccCCCceEEEE
Confidence 4578999999999999999999999998532211 11 122211 378999999999976658754444
No 64
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=97.67 E-value=3.4e-05 Score=61.67 Aligned_cols=60 Identities=13% Similarity=0.006 Sum_probs=43.6
Q ss_pred cccccCCChHHHHHHHHHcCceEEe--ecccchhhhcCCCCCCCCccCccccccCccc-----cCCCCCCCee
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHL--RGHNLSSLALNSHSPSPLQPGHSVSLPLGTW-----LNLPLSLPSP 71 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHV--Dga~~~al~~~~~~~~gi~~ADS~t~d~HKw-----L~vP~~~~~~ 71 (98)
+.+|.+||+++|+++|+++|+|++| |+...+.+.. .+--.+|-++.+.||| ++-| +++.+
T Consensus 214 n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~~~g~~~~-----~~~~~~D~~~~s~~k~~~~~~~~Gp-g~G~l 280 (447)
T PRK00451 214 NFFGVIEDLEEIAEIAHAGGALFIVGVDPVSLGLLKP-----PGEYGADIVVGEGQPLGIPLSFGGP-YLGFF 280 (447)
T ss_pred CCCCeeCCHHHHHHHHHHCCCEEEEEcChHHhccCCC-----cccCCCCEEEECCCcCCCCCCCCCC-CchHH
Confidence 5689999999999999999999999 5443222211 2445789999999997 4445 55443
No 65
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=97.66 E-value=0.00013 Score=57.61 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=47.5
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
+++|..-|+++|+++|++||++++||++.............-++.+|-++..+||||.-| . +..++.++
T Consensus 174 ~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~~~di~~~S~~K~l~g~-~-gg~i~~~~ 242 (416)
T PRK00011 174 SAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGP-R-GGLILTND 242 (416)
T ss_pred CcCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCCCCcEEEecCCcCCCCC-C-ceEEEeCC
Confidence 567777799999999999999999999744333322111111226799999999999656 3 34556544
No 66
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=97.64 E-value=6.8e-05 Score=62.98 Aligned_cols=68 Identities=6% Similarity=0.030 Sum_probs=51.8
Q ss_pred CCChHHHHHHHHHcCceEEeecc--cchhhhcCCC--CCCC----------CccCccccccCccccCCCCCCCeeEEecC
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGH--NLSSLALNSH--SPSP----------LQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga--~~~al~~~~~--~~~g----------i~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
.+++++|.++|++||+.+|.||+ .+.+.++.++ ...| .+.+|.+++.+||-+.+| .+.+++.++
T Consensus 197 ~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~--~GG~i~t~D 274 (460)
T PRK13237 197 MANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVN--IGGFLAMND 274 (460)
T ss_pred HHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCC--CceEEEECC
Confidence 46899999999999999999995 5555455332 1222 357999999999999999 367778887
Q ss_pred CCCc
Q psy2484 77 VPPS 80 (98)
Q Consensus 77 ~~~~ 80 (98)
++..
T Consensus 275 ~eL~ 278 (460)
T PRK13237 275 EELF 278 (460)
T ss_pred HHHH
Confidence 6443
No 67
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=97.61 E-value=1.9e-05 Score=62.52 Aligned_cols=66 Identities=9% Similarity=-0.108 Sum_probs=50.1
Q ss_pred CCcccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484 2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r 75 (98)
|--+|.+|..-|+++|++ +++|+++-||+. ..+..-+. ++..|=+....||||+-|.+++.+.+.+
T Consensus 143 ~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pid------v~~iD~~~~s~~K~l~~P~G~g~l~v~~ 209 (378)
T PRK03080 143 TWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLD------WSKLDVYTFSWQKVLGGEGGHGMAILSP 209 (378)
T ss_pred EecCCccceeccchhhcc--ccCCCeEEEecccccccCCCC------HHHCcEEEEehhhhCCCCCceEEEEECH
Confidence 345789999999999999 889999999996 33332221 2236999999999999986876554443
No 68
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=97.59 E-value=7.9e-05 Score=57.93 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=43.3
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCC-ccCccccccCccccCCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPL-QPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi-~~ADS~t~d~HKwL~vP 65 (98)
..+|.+.|+++|+++|++||+||++|.+......-...+ ..++ +..|-++..+||||+-+
T Consensus 181 ~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~ 245 (393)
T TIGR01822 181 SMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGA 245 (393)
T ss_pred cCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCC
Confidence 457999999999999999999999999853322211111 1233 25788888999998754
No 69
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=97.55 E-value=0.0001 Score=58.37 Aligned_cols=62 Identities=11% Similarity=-0.014 Sum_probs=45.9
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r 75 (98)
.+|.+=|+++|+++|++||+++++|++.+.-+ ... . . ..+|.++...||||+-| .. .+++.+
T Consensus 161 ~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~--~~~-~-~-~g~D~~~~S~~K~l~gp-~~-G~l~~~ 222 (363)
T TIGR01437 161 VQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL--QKY-Y-R-LGADLVIYSGAKAIEGP-TS-GLVLGK 222 (363)
T ss_pred CcCCcCCHHHHHHHHHHcCCeEEEECCCCCch--HHH-H-H-cCCCEEEEeCCcccCCC-ce-EEEEEc
Confidence 46778889999999999999999999865211 100 0 1 13799999999999999 44 455544
No 70
>PLN02271 serine hydroxymethyltransferase
Probab=97.52 E-value=0.00023 Score=61.47 Aligned_cols=65 Identities=14% Similarity=0.046 Sum_probs=47.8
Q ss_pred cCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484 10 HVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 10 a~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
-.-|+++|++||+++|+.|.||++=.++++.....-.-+..||-++...||||.=|-+ + ++++|+
T Consensus 311 r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGPrG-G-~I~~r~ 375 (586)
T PLN02271 311 REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRG-G-IIFYRK 375 (586)
T ss_pred CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCCCc-e-EEEecc
Confidence 4557999999999999999999974444443322112355699999999999999954 4 555554
No 71
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=97.51 E-value=0.00016 Score=56.66 Aligned_cols=58 Identities=7% Similarity=0.031 Sum_probs=44.0
Q ss_pred ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484 5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP 65 (98)
+..+|.+.|+++|.++|++||.|+.||.+.+.. .++.. ... ...|-++..+|||++.+
T Consensus 156 ~~~~G~~~~l~~i~~la~~~~~~livDea~~~g-~~~~~-~~~-~~~di~v~s~sK~~~~~ 213 (370)
T TIGR02539 156 DGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVG-RMPVS-AKE-IGADFIVGSGHKSMAAS 213 (370)
T ss_pred CCCCccccCHHHHHHHHHHcCCeEEEECccccC-CcCCC-HHH-cCCCEEEeeCcccccCC
Confidence 346799999999999999999999999976543 12211 111 13788899999999965
No 72
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=97.51 E-value=0.00012 Score=61.97 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=50.5
Q ss_pred cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC-C--CCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484 4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-S--PSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~--~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
|.++.|..-|+++|++||++||.+|.||.+=+++++--.. . ......+|-++...||||+=|. +.+++.++
T Consensus 227 g~S~~~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~--GG~I~~~~ 300 (493)
T PRK13580 227 GYSAYPRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPR--GGLVLAKK 300 (493)
T ss_pred CccccCCCcCHHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCCCCcEEEeCChhhccCCC--eEEEEecH
Confidence 5556677889999999999999999999963333322111 1 2345689999999999996683 34555443
No 73
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=97.48 E-value=0.00012 Score=61.81 Aligned_cols=65 Identities=11% Similarity=0.145 Sum_probs=49.7
Q ss_pred CCChHHHHHHHHHcCceEEeecccch--hhhcCCC-------CCC-----CCccCccccccCccccCCCCCCCeeEEecC
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGHNLS--SLALNSH-------SPS-----PLQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga~~~--al~~~~~-------~~~-----gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
.+++++++++|++||+=+|+||+=.+ |.++.++ ..+ -.+.+||+++.+-|-|++| .++++.-++
T Consensus 203 lenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgAp--vGg~Lag~d 280 (467)
T TIGR02617 203 LANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVP--MGGLLCFKD 280 (467)
T ss_pred HHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCc--ccceEEecc
Confidence 68899999999999999999997333 3333222 111 1378999999999999999 567888777
Q ss_pred C
Q psy2484 77 V 77 (98)
Q Consensus 77 ~ 77 (98)
+
T Consensus 281 ~ 281 (467)
T TIGR02617 281 D 281 (467)
T ss_pred h
Confidence 6
No 74
>KOG1368|consensus
Probab=97.48 E-value=3e-05 Score=63.42 Aligned_cols=61 Identities=20% Similarity=0.191 Sum_probs=46.3
Q ss_pred CCChHHHHHHHHHcCceEEeecc--cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGH--NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR 73 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga--~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll 73 (98)
++-+++|.++|+++|+-||.||+ +-++.++-=.--+-.+.+||+.+=+.|-|+.| ++++++
T Consensus 174 le~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAP--VGSViV 236 (384)
T KOG1368|consen 174 LEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAP--VGSVIV 236 (384)
T ss_pred HHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCC--cccEEE
Confidence 45566788899999999999997 44444443222234578999999999999999 577776
No 75
>PRK12566 glycine dehydrogenase; Provisional
Probab=97.46 E-value=0.00015 Score=65.50 Aligned_cols=65 Identities=12% Similarity=0.054 Sum_probs=48.4
Q ss_pred ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCee
Q psy2484 5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSP 71 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ 71 (98)
++..+-.+|+++|+++|+++|..++|||+...++..-+ ..|--.||-++.++||||+.|.+.+..
T Consensus 651 nt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~--~Pg~~GADi~~~s~HKtf~~P~G~GGP 715 (954)
T PRK12566 651 STHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLA--RPADIGADVSHMNLHKTFCIPHGGGGP 715 (954)
T ss_pred CcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCC--ChhhcCCCEEEecCCcccCcCccCCCC
Confidence 34444568899999999999999999998643333211 124566999999999999988766543
No 76
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=97.43 E-value=0.00028 Score=54.05 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=40.9
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC----CCCCCc-cCc-cccccCccccCCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH----SPSPLQ-PGH-SVSLPLGTWLNLP 65 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~----~~~gi~-~AD-S~t~d~HKwL~vP 65 (98)
+.+|..+|+++|+++|++||+|+++|.+.+....-... ...+++ ..| -+....+||++.+
T Consensus 179 ~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 244 (385)
T PRK05958 179 SMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSS 244 (385)
T ss_pred cCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccC
Confidence 35788999999999999999999999976433221111 011232 234 2357789999987
No 77
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=97.41 E-value=0.00027 Score=55.42 Aligned_cols=68 Identities=6% Similarity=0.067 Sum_probs=48.1
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCc--cccCCCCCCCeeEEecC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLG--TWLNLPLSLPSPARTQR 76 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~H--KwL~vP~~~~~~ll~r~ 76 (98)
.+|..-|+++|+++|++||+|+-+|++-..........+...+.+|-.++..| ||++.+ . +.+++.++
T Consensus 130 ~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~~~~d~~~~S~~~~K~~~~~-~-GG~v~~~~ 199 (380)
T TIGR03588 130 FAGKSVDMQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNCRYADATVFSFHPVKIITTA-E-GGAVTTND 199 (380)
T ss_pred CCCccCCHHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCccccceEEEecCCCCccccc-C-ceEEEECC
Confidence 36888899999999999999999999633222233222322246799999988 999987 3 45556554
No 78
>PLN02724 Molybdenum cofactor sulfurase
Probab=97.36 E-value=0.00024 Score=62.13 Aligned_cols=69 Identities=13% Similarity=0.095 Sum_probs=47.9
Q ss_pred CcccccccCCChHHHHHHHHHc-------C-ceEEeecccc-hhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484 3 IGSSLNGHVDNVSLLQEICAKY-------N-LWLHLRGHNL-SSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPAR 73 (98)
Q Consensus 3 aGtt~~Ga~D~l~~i~~ic~~~-------~-lWlHVDga~~-~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll 73 (98)
+-+..+|.+-|+++|.++++.. | ++++|||+-. +..-+. ++.+ .+|-+++++|||++-|.+++++++
T Consensus 200 ~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piD---v~~~-~~Dfl~~S~HK~~GgP~G~G~L~v 275 (805)
T PLN02724 200 SECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPD---LSRY-PADFVVVSFYKIFGYPTGLGALLV 275 (805)
T ss_pred ccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCC---hhhc-CCCEEEEecceeccCCCCceEEEE
Confidence 4456899999999887766643 3 5699999633 222221 2211 489999999999999978875555
Q ss_pred ec
Q psy2484 74 TQ 75 (98)
Q Consensus 74 ~r 75 (98)
.+
T Consensus 276 r~ 277 (805)
T PLN02724 276 RR 277 (805)
T ss_pred eh
Confidence 44
No 79
>PRK07179 hypothetical protein; Provisional
Probab=97.30 E-value=0.00046 Score=54.61 Aligned_cols=64 Identities=9% Similarity=0.020 Sum_probs=45.1
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCC-ccCccccccCccccCCCCCCCeeE
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPL-QPGHSVSLPLGTWLNLPLSLPSPA 72 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi-~~ADS~t~d~HKwL~vP~~~~~~l 72 (98)
.+|.+-|+++|+++|++||+||+||.+......-+..+ .-++ +..|-++...||+++.+ .+.++
T Consensus 193 ~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~~--~G~l~ 261 (407)
T PRK07179 193 TTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAGR--AGIIT 261 (407)
T ss_pred CCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhcc--CeEEE
Confidence 47899999999999999999999999643222111111 1133 35789999999999965 44433
No 80
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=97.20 E-value=0.00053 Score=54.73 Aligned_cols=68 Identities=10% Similarity=0.032 Sum_probs=49.4
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC-CeeEEecCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL-PSPARTQRV 77 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~-~~~ll~r~~ 77 (98)
..+|.+-|+++|+++|+++|+++-||++.++.....+... .+|-+...+||||+-|-+. +.+++.+++
T Consensus 142 nptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~~l~~----g~Di~v~S~tK~l~G~~~~~~G~v~~~~~ 210 (378)
T TIGR01329 142 NPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPLEL----GADIVYHSATKFLAGHSDVMAGVLAVKGE 210 (378)
T ss_pred CCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChhhc----CCcEEEEecceeccCCccceeEEEEeCcH
Confidence 4578888999999999999999999997644432221111 5799999999999987331 455555554
No 81
>PRK06767 methionine gamma-lyase; Provisional
Probab=97.18 E-value=0.00078 Score=53.75 Aligned_cols=65 Identities=5% Similarity=-0.072 Sum_probs=47.9
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQR 76 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~ 76 (98)
.+|.+-|+++|.++|+++|+|++||.+....... .. + ...+|.++...+|+++.+ +. +.+++.++
T Consensus 158 ptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~-~p-l--~~g~Div~~S~sK~l~g~-g~~~gG~v~~~~ 224 (386)
T PRK06767 158 PTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQ-RP-L--ELGCDAVVHSATKYIGGH-GDVVAGVTICKT 224 (386)
T ss_pred CCceecCHHHHHHHHHHcCCEEEEECCCcccccC-Cc-h--hcCCcEEEecCcceecCC-CCceeEEEEeCh
Confidence 4788889999999999999999999986432211 11 1 135799999999999998 64 34555444
No 82
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=97.13 E-value=0.0002 Score=58.38 Aligned_cols=62 Identities=19% Similarity=0.158 Sum_probs=44.0
Q ss_pred CCChHHHHHHHHHcCceEEeecc-cchhhhcCCC-CCCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSH-SPSPLQPGHSVSLPLGTWLNLPLSLPSPART 74 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~-~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~ 74 (98)
.|.|++|+++|++||+=||+||+ ...+++.... ...-..-.||+.+=+-|-++.| ..++++.
T Consensus 149 l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~--~gAiv~g 212 (342)
T COG2008 149 LDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAP--VGAIVFG 212 (342)
T ss_pred HHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcce--eeeEEEc
Confidence 46777888899999999999997 2222222222 2233456899999999999999 3456554
No 83
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=97.09 E-value=0.00096 Score=52.94 Aligned_cols=67 Identities=7% Similarity=-0.012 Sum_probs=46.0
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
.+|..-|+++|+++|++||+++.+|++...........+... ..+.+.+..+|+|..+ -+.+++.++
T Consensus 130 ~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~-g~~~~Sf~~~K~l~~g--~GG~v~~~~ 196 (379)
T PRK11658 130 YAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGAR-GTAIFSFHAIKNITCA--EGGLVVTDD 196 (379)
T ss_pred CCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCC-CCEEEeCCCCCcCccc--CceEEEECC
Confidence 468888999999999999999999997543322222122212 2367888899998765 355556554
No 84
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=97.05 E-value=0.0009 Score=53.86 Aligned_cols=65 Identities=9% Similarity=-0.010 Sum_probs=47.0
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQR 76 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~ 76 (98)
.+|.+=|+++|.++|+++|+++.||.+........ ..- ..+|-++..++||++.+ +. +.+++.++
T Consensus 162 ptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~-~~~---~gaDivv~S~sK~l~g~-g~~~GG~vv~~~ 228 (398)
T PRK07504 162 PTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQK-PLE---LGAHIVVYSATKHIDGQ-GRCLGGVVLSDK 228 (398)
T ss_pred CCcEecCHHHHHHHHHHcCCEEEEECCccccccCC-chh---hCCCEEEeeccccccCC-ccceEEEEEeCc
Confidence 46777789999999999999999999754332211 111 13799999999999987 63 44555444
No 85
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=97.03 E-value=0.0012 Score=52.00 Aligned_cols=66 Identities=8% Similarity=-0.033 Sum_probs=48.3
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQR 76 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~ 76 (98)
..+|.+-|+++|+++|++||++++||.+.+....... +. ..+|-+....+|+++-+ +. +.+++.++
T Consensus 136 np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~~~--~~--~g~Divv~S~tK~l~g~-~~~~gG~v~~~~ 203 (369)
T cd00614 136 NPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRP--LE--LGADIVVHSATKYIGGH-SDVIAGVVVGSG 203 (369)
T ss_pred CCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcCCh--hh--hCCcEEEeccceeccCC-CCceEEEEEeCc
Confidence 4578899999999999999999999998654433111 11 14788999999999976 42 34455544
No 86
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=97.00 E-value=0.0011 Score=53.26 Aligned_cols=65 Identities=9% Similarity=-0.008 Sum_probs=46.7
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEec
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQ 75 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r 75 (98)
..+|.+-|+++|+++|+++|+|+.||..........+. . ..+|-++..++||++.+ +. +.+++.+
T Consensus 157 NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~pl-~---~g~Divv~S~sK~~~g~-g~~~GG~vv~~ 223 (390)
T PRK08133 157 NPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQPL-K---LGADVVIHSATKYLDGQ-GRVLGGAVVGS 223 (390)
T ss_pred CCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCCch-h---hCCcEEEeecceeecCC-cceEeEEEEcC
Confidence 35788899999999999999999999975433221111 1 13688899999999988 53 3444443
No 87
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=97.00 E-value=0.00079 Score=55.62 Aligned_cols=65 Identities=9% Similarity=0.063 Sum_probs=46.4
Q ss_pred CCChHHHHHHHHHcCceEEeecc--cchhhhcCC----C---CCCC-----CccCccccccCccccCCCCCCCeeEEecC
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGH--NLSSLALNS----H---SPSP-----LQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga--~~~al~~~~----~---~~~g-----i~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
.+++++|+++|++||+|++.|++ +..+....+ . .+.. .+.+|++++..+|++..|. +.+++.++
T Consensus 197 ~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~--GG~i~~~d 274 (460)
T PRK13238 197 MANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNI--GGLLCFRD 274 (460)
T ss_pred HHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcc--eeEEEcCh
Confidence 56789999999999999999994 333332221 1 1111 2569999999999999994 56777665
Q ss_pred C
Q psy2484 77 V 77 (98)
Q Consensus 77 ~ 77 (98)
+
T Consensus 275 ~ 275 (460)
T PRK13238 275 E 275 (460)
T ss_pred H
Confidence 4
No 88
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=96.93 E-value=0.0014 Score=51.53 Aligned_cols=62 Identities=11% Similarity=0.080 Sum_probs=40.9
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCCccCccccccCccccCCCCCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPLQPGHSVSLPLGTWLNLPLSL 68 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi~~ADS~t~d~HKwL~vP~~~ 68 (98)
..+|.+-|+++|+++|+++|++||||++.+.+..-...+ ..|.+..+-+...++|.++.+ +.
T Consensus 154 s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~-G~ 219 (370)
T PRK05937 154 SFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSM-GA 219 (370)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcC-ce
Confidence 357899999999999999999999999754332222111 112222223345677999876 54
No 89
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=96.89 E-value=0.0013 Score=54.36 Aligned_cols=65 Identities=8% Similarity=0.029 Sum_probs=46.8
Q ss_pred CCChHHHHHHHHHcCceEEeecc--cchhhhcC----CCCCC--------CCccCccccccCccccCCCCCCCeeEEecC
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGH--NLSSLALN----SHSPS--------PLQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga--~~~al~~~----~~~~~--------gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
.++|++|+++|++||+|++.|++ ...+.... ..... -.+.+|++++..+|-+.+|. +.+++.++
T Consensus 172 ~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~--GG~i~~~d 249 (431)
T cd00617 172 MANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNI--GGFLALRD 249 (431)
T ss_pred HHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCcc--ceEEEeCc
Confidence 45788999999999999999997 33333321 11111 12469999999999999993 66667776
Q ss_pred C
Q psy2484 77 V 77 (98)
Q Consensus 77 ~ 77 (98)
+
T Consensus 250 ~ 250 (431)
T cd00617 250 D 250 (431)
T ss_pred H
Confidence 4
No 90
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=96.88 E-value=0.002 Score=51.77 Aligned_cols=63 Identities=2% Similarity=-0.157 Sum_probs=47.0
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEe
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPART 74 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~ 74 (98)
.+|.+=|+++|.++|+++|+|+.||.+.+.... ... . -..+|-++..++|+++.+ +. +.+++.
T Consensus 156 p~G~v~dl~~I~~la~~~gi~livD~a~a~~~~-~~~-~--~~g~Divv~S~sK~lgg~-g~~~gG~v~~ 220 (391)
T TIGR01328 156 PTMKLIDMERVCRDAHSQGVKVIVDNTFATPML-TNP-V--ALGVDVVVHSATKYIGGH-GDVVAGLICG 220 (391)
T ss_pred CCCcccCHHHHHHHHHHcCCEEEEECCCchhcc-CCc-h--hcCCCEEEccccccccCC-CCceEEEEEc
Confidence 468888899999999999999999998654332 111 1 135888999999999998 64 344443
No 91
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=96.86 E-value=0.0016 Score=50.27 Aligned_cols=57 Identities=11% Similarity=0.199 Sum_probs=40.6
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC----CCCCC-ccCccccccCccccC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH----SPSPL-QPGHSVSLPLGTWLN 63 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~----~~~gi-~~ADS~t~d~HKwL~ 63 (98)
.+|..+++++|+++|++||+|+.+|..+.....-... ...++ +..|-++..++|+++
T Consensus 186 ~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~ 247 (397)
T PRK06939 186 MDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALG 247 (397)
T ss_pred CCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhC
Confidence 4688899999999999999999999986422211111 11233 346777789999994
No 92
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=96.85 E-value=0.0015 Score=53.59 Aligned_cols=57 Identities=11% Similarity=-0.012 Sum_probs=44.8
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS 67 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~ 67 (98)
..+|.+=|+++|+++|+++|+++.||++........+ + --.||-++...|||++=+ +
T Consensus 160 np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~p--l--~~GaD~vv~S~tK~l~g~-g 216 (433)
T PRK08134 160 NPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRP--F--EHGADLVYHSATKFLGGH-G 216 (433)
T ss_pred cccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCc--h--hcCCCEEEeccccccCCC-C
Confidence 3577788999999999999999999997544433211 1 135899999999999987 5
No 93
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=96.81 E-value=0.0021 Score=51.20 Aligned_cols=64 Identities=8% Similarity=0.004 Sum_probs=46.6
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEec
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQ 75 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r 75 (98)
.+|.+-|+++|+++|+++|+++.||.+........+ ++ ..+|-++..++||++-+ +. +.+++.+
T Consensus 151 p~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~p--l~--~g~Divv~S~sK~l~g~-g~~~gG~vv~~ 216 (380)
T TIGR01325 151 PLGELVDIAALAELAHAIGALLVVDNVFATPVLQQP--LK--LGADVVVYSATKHIDGQ-GRVMGGVIAGS 216 (380)
T ss_pred CCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCc--hh--hCCCEEEeeccceecCC-CCeEEEEEEeC
Confidence 478888999999999999999999998653322211 11 13799999999999987 43 3444433
No 94
>PLN02509 cystathionine beta-lyase
Probab=96.74 E-value=0.0025 Score=53.16 Aligned_cols=68 Identities=4% Similarity=-0.007 Sum_probs=49.9
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC-CeeEEecCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL-PSPARTQRV 77 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~-~~~ll~r~~ 77 (98)
..+|.+.|+++|+++|++||+++-||.+.+...... . . -..+|-+...++|||+-+-++ +.++..+++
T Consensus 228 NPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~-p-l--~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~ 296 (464)
T PLN02509 228 NPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSR-P-L--ELGADIVMHSATKFIAGHSDVMAGVLAVKGE 296 (464)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCC-h-h--hcCCcEEEecCcccccCCCccceeEEEeccH
Confidence 457889999999999999999999999865443321 1 1 135899999999999987332 455554443
No 95
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=96.74 E-value=0.0027 Score=52.35 Aligned_cols=62 Identities=8% Similarity=0.024 Sum_probs=46.0
Q ss_pred cccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEe
Q psy2484 8 NGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPART 74 (98)
Q Consensus 8 ~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~ 74 (98)
+|.+=|+++|+++|+++|+-++||++.+......... . .||-++...|||++-+ +. +.+++.
T Consensus 168 ~~~v~di~~I~~la~~~gi~livD~t~a~g~~~~p~~-~---GaDivv~S~~K~l~G~-gd~~gG~vv~ 231 (437)
T PRK05613 168 QADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRPLE-L---GADVVVASLTKFYTGN-GSGLGGVLID 231 (437)
T ss_pred CCcccCHHHHHHHHHHcCCeEEEECCCccccccChHH-h---CCCEEEeeccceecCC-CcceeEEEEe
Confidence 4677899999999999999999999754333222111 1 3799999999999987 54 555553
No 96
>PRK05939 hypothetical protein; Provisional
Probab=96.72 E-value=0.0018 Score=52.41 Aligned_cols=58 Identities=10% Similarity=0.111 Sum_probs=44.5
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL 68 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~ 68 (98)
..+|.+-|+++|+++|+++|+|+.||...+....+..... .+|-+.-..+||++-+ +.
T Consensus 142 NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~~~~----gaDivv~S~sK~~~g~-g~ 199 (397)
T PRK05939 142 NPGTQVADLAGIGALCRERGLLYVVDNTMTSPWLFRPKDV----GASLVINSLSKYIAGH-GN 199 (397)
T ss_pred CCCCCHHhHHHHHHHHHHcCCEEEEECCcccccccCcccc----CCEEEEecCeecccCC-CC
Confidence 3578889999999999999999999997544332211111 4888999999999987 54
No 97
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=96.70 E-value=0.0031 Score=47.65 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=42.5
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC----CCCCC--ccCccccccCccccCCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH----SPSPL--QPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~----~~~gi--~~ADS~t~d~HKwL~vP 65 (98)
+.+|...|+++|.++|+++|+|+.+|.+......-... ...++ +..|-+...++|+|+.+
T Consensus 157 ~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~ 222 (360)
T TIGR00858 157 SMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSY 222 (360)
T ss_pred cCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhcc
Confidence 35788899999999999999999999976432211111 12233 23466677899999987
No 98
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=96.67 E-value=0.0033 Score=50.36 Aligned_cols=66 Identities=9% Similarity=-0.053 Sum_probs=48.3
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQRV 77 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~~ 77 (98)
.+|...++++|+++|+++|+|+-||.+.+......+ + -..+|-++...+||++-| +. +.+++.+++
T Consensus 158 Ptg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p--~--~~gaDivv~S~sK~l~g~-~~~~gG~vv~~~~ 225 (388)
T PRK07811 158 PLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQP--L--ALGADVVVHSTTKYIGGH-SDVVGGALVTNDE 225 (388)
T ss_pred CcceecCHHHHHHHHHHcCCEEEEECCCCccccCCc--h--hhCCcEEEecCceeecCC-CCcEEEEEEECCH
Confidence 468889999999999999999999997654322111 1 125798999999999988 42 345555543
No 99
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=96.65 E-value=0.0034 Score=48.58 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=40.7
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC----CCCCCc-cCccccccCccccCCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH----SPSPLQ-PGHSVSLPLGTWLNLP 65 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~----~~~gi~-~ADS~t~d~HKwL~vP 65 (98)
+.+|.+.|+++|+++|++||+|+.+|.+.+....-... ..-+++ ..|=+....+|+++.+
T Consensus 174 ~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 238 (385)
T TIGR01825 174 SMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVV 238 (385)
T ss_pred cCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcC
Confidence 45788999999999999999999999986432211100 011222 2333456889999987
No 100
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=96.64 E-value=0.00071 Score=53.61 Aligned_cols=56 Identities=5% Similarity=-0.029 Sum_probs=44.5
Q ss_pred CCCcccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484 1 MEIGSSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 1 ~taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP 65 (98)
+|..+|++|...|+++| ++++|+.+=||+. ..+..-+. ++.+|=++...||||+-|
T Consensus 134 ~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~id------v~~~D~~~~s~~K~lg~~ 190 (361)
T TIGR01366 134 WAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGLPVD------IAETDVYYFAPQKNFASD 190 (361)
T ss_pred EcccCCccceecccccc---cccCCCeEEEEcCccccCCCCC------HHHCCEEEEEchhhcCCC
Confidence 36688999999999888 5899999999995 33333222 234899999999999988
No 101
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=96.63 E-value=0.0046 Score=50.04 Aligned_cols=57 Identities=7% Similarity=-0.033 Sum_probs=43.7
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL 68 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~ 68 (98)
.+|.+-|+++|+++|+++|+++.||.+.+...... . + -..+|-++...+||++.+ +.
T Consensus 154 Ptg~v~dl~~I~~la~~~~i~livD~t~~~~~~~~-~-l--~~g~Divv~S~sK~l~g~-G~ 210 (418)
T TIGR01326 154 PAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLCR-P-I--DHGADIVVHSATKYIGGH-GT 210 (418)
T ss_pred CCCeecCHHHHHHHHHHcCCEEEEECCCchhhcCC-c-h--hcCCeEEEECccccccCC-cc
Confidence 46777899999999999999999999765432211 1 1 124899999999999987 53
No 102
>PRK04311 selenocysteine synthase; Provisional
Probab=96.60 E-value=0.003 Score=52.68 Aligned_cols=64 Identities=11% Similarity=-0.069 Sum_probs=43.6
Q ss_pred cCCChHHHHHHHHHcCceEEeecccchh-----hhcCCC-CC-C-CCccCccccccCccccCCCCCCCeeEEec
Q psy2484 10 HVDNVSLLQEICAKYNLWLHLRGHNLSS-----LALNSH-SP-S-PLQPGHSVSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 10 a~D~l~~i~~ic~~~~lWlHVDga~~~a-----l~~~~~-~~-~-gi~~ADS~t~d~HKwL~vP~~~~~~ll~r 75 (98)
..=|+++|+++|++||+.+-||+..|.. ..++.. .+ + --..+|-++..+||||+=| ..+ +++.|
T Consensus 235 ~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp-~~G-~i~g~ 306 (464)
T PRK04311 235 KEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP-QAG-IIVGK 306 (464)
T ss_pred CcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC-ceE-EEEEc
Confidence 4458999999999999999999843221 111111 11 1 1135899999999999999 554 44444
No 103
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=96.58 E-value=0.0043 Score=48.93 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=42.7
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCC-ccCccccccCccccCCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPL-QPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi-~~ADS~t~d~HKwL~vP 65 (98)
..+|.+-|+++|.++|++||+||.||.+......-+..+ ..++ +..|-++-.+.|.++.+
T Consensus 188 ~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~ 252 (402)
T TIGR01821 188 SMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVV 252 (402)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccC
Confidence 357889999999999999999999999744332222211 1232 34576666889999987
No 104
>PRK07671 cystathionine beta-lyase; Provisional
Probab=96.56 E-value=0.0044 Score=49.58 Aligned_cols=67 Identities=6% Similarity=-0.054 Sum_probs=47.9
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC-CCeeEEecCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS-LPSPARTQRV 77 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~-~~~~ll~r~~ 77 (98)
.+|.+.++++|+++|+++|+++.||.+........ . . -..+|-++..+.||++-|-+ .+.+++.+++
T Consensus 146 Ptg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~-p-~--~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~ 213 (377)
T PRK07671 146 PLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQS-P-I--SLGADIVLHSATKYLGGHSDVVAGLVVVNSP 213 (377)
T ss_pred CCCcccCHHHHHHHHHHcCCEEEEECCCCccccCC-h-h--hhCCeEEEecCcccccCCccceeEEEEeCcH
Confidence 46888999999999999999999999865322221 1 1 12568999999999997722 2444555543
No 105
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=96.53 E-value=0.004 Score=49.99 Aligned_cols=66 Identities=11% Similarity=-0.042 Sum_probs=47.3
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQRV 77 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~~ 77 (98)
.+|.+=|+++|+++|+++|+|+-||.+.+........ . ..+|-++...+|||+-| +. +.+++..++
T Consensus 149 PtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l-~---~GaDivv~S~sK~l~g~-~d~~gG~vi~~~~ 216 (385)
T PRK08574 149 PTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPL-R---HGADFVVHSLTKYIAGH-NDVVGGVAVAWSG 216 (385)
T ss_pred CCCEecCHHHHHHHHHHcCCEEEEECCCCccccCChh-h---hCCcEEEeeCceeecCC-CCceeEEEEECcH
Confidence 4677778999999999999999999975433322211 1 23799999999999988 43 444555443
No 106
>PRK05968 hypothetical protein; Provisional
Probab=96.52 E-value=0.0032 Score=50.44 Aligned_cols=56 Identities=11% Similarity=-0.018 Sum_probs=42.5
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP 65 (98)
..++...|+++|+++|++||+.++||++.+...... .... .+|-++..++|+++.|
T Consensus 158 ~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~-p~~~---g~Divv~S~tK~l~g~ 213 (389)
T PRK05968 158 SWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQR-PITL---GVDLVIHSASKYLGGH 213 (389)
T ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccC-chhc---CCcEEEeeccccccCC
Confidence 346677999999999999999999999764332211 1112 3688999999999997
No 107
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=96.46 E-value=0.0067 Score=50.15 Aligned_cols=70 Identities=17% Similarity=0.122 Sum_probs=46.3
Q ss_pred cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484 4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r 75 (98)
|.++.--.-|++++++||++.|..|++|.+=-++|+....--.-++.||-+|..-||.|.=| .. .+++++
T Consensus 176 G~S~y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~ADvvt~sThKtl~GP-rg-giI~~~ 245 (399)
T PF00464_consen 176 GASSYPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPYADVVTGSTHKTLRGP-RG-GIILTN 245 (399)
T ss_dssp E-SSTSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCTSSEEEEESSGGG-SS-S--EEEEES
T ss_pred CchhccCccCHHHHHHHHHhcCcEEEecccccccceehheecCccccceEEEeecccccccc-Cc-eEEEEc
Confidence 45555556689999999999999999999744555544432234567999999999999999 55 455665
No 108
>PRK07050 cystathionine beta-lyase; Provisional
Probab=96.38 E-value=0.0042 Score=50.06 Aligned_cols=67 Identities=9% Similarity=0.016 Sum_probs=47.4
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC-CeeEEecCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL-PSPARTQRV 77 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~-~~~ll~r~~ 77 (98)
.+|...++++|+++|+++|+|+++|+++.......+... | +|-++....|+++-.-++ +.+++.+++
T Consensus 162 p~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~~~l~~-G---aDi~v~S~tK~~~g~~~~~gG~v~~~~~ 229 (394)
T PRK07050 162 VTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKPFEH-G---VDISVQALTKYQSGGSDVLMGATITADA 229 (394)
T ss_pred CCccHhhHHHHHHHHHHcCCEEEEECCcccccccCHHHc-C---CeEEEEECCceecCCCCeeEEEEEECCH
Confidence 468899999999999999999999998655443322211 2 688888899999755232 344555543
No 109
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=96.36 E-value=0.0081 Score=48.19 Aligned_cols=68 Identities=9% Similarity=-0.025 Sum_probs=48.7
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC-CCeeEEecCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS-LPSPARTQRV 77 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~-~~~~ll~r~~ 77 (98)
..+|.+-|+++|+++|+++|+++-||.+........ .. -..+|-++..++||++-|-+ .+.+++.+++
T Consensus 145 Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~~--p~--~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~ 213 (380)
T PRK06176 145 NPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQN--PL--LLGADIVVHSGTKYLGGHSDVVAGLVTTNNE 213 (380)
T ss_pred CCCceecCHHHHHHHHHHcCCEEEEECCccccccCC--cc--ccCCCEEEecCceeccCCccceeeEEEecHH
Confidence 357788899999999999999999999765332211 11 13589999999999998722 2455555543
No 110
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=96.35 E-value=0.0069 Score=49.35 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=43.4
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP 65 (98)
.+|.+=|+++|+++|+++|+|+.||.+......... + -..+|-++...|||++-+
T Consensus 160 ptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~~p--l--~~gaDivv~S~tK~lgg~ 214 (427)
T PRK05994 160 PGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIRP--I--EHGADIVVHSLTKFLGGH 214 (427)
T ss_pred CCCeecCHHHHHHHHHHcCCEEEEECCccccccCCc--c--ccCCcEEEEcCccccCCC
Confidence 467788999999999999999999997654332211 1 135999999999999987
No 111
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=96.31 E-value=0.0052 Score=51.13 Aligned_cols=65 Identities=11% Similarity=-0.059 Sum_probs=43.9
Q ss_pred cCCChHHHHHHHHHcCceEEeecccchh-----hhcCCC--CCCC-CccCccccccCccccCCCCCCCeeEEecC
Q psy2484 10 HVDNVSLLQEICAKYNLWLHLRGHNLSS-----LALNSH--SPSP-LQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 10 a~D~l~~i~~ic~~~~lWlHVDga~~~a-----l~~~~~--~~~g-i~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
.+=|+++|+++|++||+.+-||+..|.. .-++.. ..+. -..||=++...||||+=| .. .+++.|+
T Consensus 230 ~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp-~~-G~i~g~~ 302 (454)
T TIGR00474 230 EEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP-QA-GIIVGKK 302 (454)
T ss_pred CCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCC-eE-EEEEECH
Confidence 3568999999999999999999743221 011111 1111 235899999999999999 44 4555443
No 112
>PLN02242 methionine gamma-lyase
Probab=96.31 E-value=0.0061 Score=49.69 Aligned_cols=56 Identities=9% Similarity=0.053 Sum_probs=43.7
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL 68 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~ 68 (98)
.+|.+-++++|+++|++||+|+.||.++. .+....... .+|-+...++|+++.+ +.
T Consensus 175 PtG~v~dl~~I~~la~~~gi~livDea~~-~~~~~~~~~----g~divv~S~SK~l~g~-g~ 230 (418)
T PLN02242 175 PTLTVADIPELARIAHEKGVTVVVDNTFA-PMVLSPARL----GADVVVHSISKFISGG-AD 230 (418)
T ss_pred CCCcccCHHHHHHHHHHhCCEEEEECCCC-ccCCCHHHc----CCcEEEEeCccccCCC-CC
Confidence 47888899999999999999999999874 332221112 2799999999999988 53
No 113
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=96.25 E-value=0.01 Score=48.16 Aligned_cols=68 Identities=10% Similarity=-0.023 Sum_probs=49.9
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecCCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQRVP 78 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~~~ 78 (98)
..+|.+.++++|+++|+++|+++=||.++....... .+. ..||=+...++|+++-| +. +.+++.++++
T Consensus 156 NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~--pl~--~gaDivv~S~tK~l~g~-~~~~~G~vv~~~~~ 225 (405)
T PRK08776 156 NPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQK--PLE--FGADLVLHSTTKYINGH-SDVVGGAVVARDAE 225 (405)
T ss_pred CCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCC--ccc--ccCCEEEecCceeecCC-CCceEEEEEeCCHH
Confidence 357889999999999999999999999865432211 111 24787889999999988 42 5566666543
No 114
>PRK09064 5-aminolevulinate synthase; Validated
Probab=96.23 E-value=0.0072 Score=47.62 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=41.9
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCC-ccCccccccCccccCCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPL-QPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi-~~ADS~t~d~HKwL~vP 65 (98)
..+|.+-|+++|.++|++||+||.||.+.+....-+..+ ..++ +..|=++-..+|.++.+
T Consensus 189 s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~ 253 (407)
T PRK09064 189 SMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVM 253 (407)
T ss_pred CCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhcc
Confidence 346888899999999999999999999754322222211 1222 34565655889999987
No 115
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=96.10 E-value=0.012 Score=48.29 Aligned_cols=57 Identities=12% Similarity=0.070 Sum_probs=43.8
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS 67 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~ 67 (98)
..+|.+=|+++|+++|+++|+++-||...+......+ + --.+|=++...|||++-| +
T Consensus 160 NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~p--l--~~gaDivv~S~tK~lgg~-g 216 (431)
T PRK08248 160 NPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRP--I--EHGADIVVHSATKFIGGH-G 216 (431)
T ss_pred CCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCCh--h--HcCCCEEEEcCccccCCC-C
Confidence 3468888999999999999999999997543221111 1 135888899999999999 6
No 116
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=96.10 E-value=0.015 Score=47.14 Aligned_cols=68 Identities=9% Similarity=-0.028 Sum_probs=49.4
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC-CCeeEEecCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS-LPSPARTQRV 77 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~-~~~~ll~r~~ 77 (98)
-.+|.+=|+++|.++|+++|+|+-||.++.......+.. -.||=++...|||++-|-+ .+.+++.+++
T Consensus 149 NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl~----~GaDivv~S~tK~l~G~~d~~gG~i~~~~~ 217 (388)
T PRK08861 149 NPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPLE----LGADFVIHSTTKYINGHSDVIGGVLITKTK 217 (388)
T ss_pred CCCCcccCHHHHHHHHHHcCCEEEEECCccccccCCCcc----cCCCEEEeecceeccCCCcceeEEEEecHH
Confidence 347888899999999999999999999875543322111 1388899999999998722 2455555543
No 117
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=96.05 E-value=0.011 Score=46.81 Aligned_cols=59 Identities=8% Similarity=0.109 Sum_probs=42.1
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCC-CccCccccccCccccCCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSP-LQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~g-i~~ADS~t~d~HKwL~vP 65 (98)
.+|.+=|+++|.++|++||+|+.||.+......-++.+ ..+ .++.|=++-.++|.++.+
T Consensus 190 ~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~ 253 (410)
T PRK13392 190 MDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCL 253 (410)
T ss_pred CCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhcc
Confidence 46888889999999999999999999755332222211 112 345675556899999998
No 118
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=95.93 E-value=0.018 Score=46.19 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=43.0
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCC------C-CCCCCccCccccccCccccCCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNS------H-SPSPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~------~-~~~gi~~ADS~t~d~HKwL~vP 65 (98)
..|.+-|+++|.++|++||++|+||.+.+....-.. + -+.....+|-++...+|.++..
T Consensus 150 ~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~ 215 (392)
T PLN03227 150 NTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSV 215 (392)
T ss_pred CCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhhcc
Confidence 468889999999999999999999996442222111 1 1222456799999999998844
No 119
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=95.90 E-value=0.0094 Score=47.92 Aligned_cols=56 Identities=5% Similarity=-0.008 Sum_probs=43.6
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP 65 (98)
..+|...||++|+++|+++|+|+=||.+.+........ -..+|=+.-..+|||+-+
T Consensus 146 Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~pl----~~gaDivv~S~tK~l~G~ 201 (377)
T TIGR01324 146 SITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFKPL----EHGVDISIQAGTKYLVGH 201 (377)
T ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCcc----ccCceEEEecCceeccCC
Confidence 35788999999999999999999999976544433221 124677888899999876
No 120
>PRK07503 methionine gamma-lyase; Provisional
Probab=95.90 E-value=0.015 Score=46.88 Aligned_cols=56 Identities=9% Similarity=-0.014 Sum_probs=42.9
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS 67 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~ 67 (98)
.+|.+-|+++|.++|+++|+++-||.+........ .+ + ..+|-+...++||++.+ +
T Consensus 162 PtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~--~l-~-~g~Di~v~S~tK~l~g~-g 217 (403)
T PRK07503 162 PNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQR--PL-E-LGADLVVHSATKYLGGH-G 217 (403)
T ss_pred CCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCC--ch-h-hCCCEEEccccccccCC-C
Confidence 46888899999999999999999999865332211 11 1 25687888899999988 5
No 121
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=95.86 E-value=0.019 Score=47.31 Aligned_cols=56 Identities=9% Similarity=-0.015 Sum_probs=43.6
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS 67 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~ 67 (98)
.+|.+=|+++|+++|+++|+.+.||++.+...... . + -..+|=++...|||++-+ +
T Consensus 167 p~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~-p-l--~~GaDivv~S~tK~lgg~-G 222 (436)
T PRK07812 167 PQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIR-P-L--EHGADIVVHSATKYLGGH-G 222 (436)
T ss_pred CCCeecCHHHHHHHHHHcCCEEEEECCCcccccCC-c-h--hcCCCEEEEecccccCCC-C
Confidence 46889999999999999999999999644332221 1 1 124899999999999977 5
No 122
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=95.86 E-value=0.0098 Score=49.49 Aligned_cols=73 Identities=12% Similarity=0.059 Sum_probs=51.3
Q ss_pred ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCC-CCCccCc-------cccccCccccCCCCCCCeeEEecC
Q psy2484 5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSP-SPLQPGH-------SVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~-~gi~~AD-------S~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
.|..|.+=++++|+++|+++|+=|+||-|.|+-+.+.+... .---.|| =++-..||.|.-- ..++++..|.
T Consensus 177 PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a~~~gad~~~~~~~~vvqS~HKtL~al-tQts~lh~~~ 255 (417)
T PF01276_consen 177 PTYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSALALGADRPNDPGIIVVQSTHKTLPAL-TQTSMLHVKG 255 (417)
T ss_dssp S-TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS--TT-EEEEEET
T ss_pred CCCCeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccchhhccCccccccceeeeechhhccccc-ccceEEEecC
Confidence 35678888999999999999999999998777766664321 1223366 8888999999988 5667777776
Q ss_pred CC
Q psy2484 77 VP 78 (98)
Q Consensus 77 ~~ 78 (98)
..
T Consensus 256 ~~ 257 (417)
T PF01276_consen 256 DR 257 (417)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 123
>PRK09028 cystathionine beta-lyase; Provisional
Probab=95.83 E-value=0.0094 Score=48.59 Aligned_cols=56 Identities=13% Similarity=0.062 Sum_probs=44.7
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP 65 (98)
..+|.+.|+++|+++|+++|+|+=||...+....+.+.. -.||=+.-..+|||+=+
T Consensus 157 NPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~~Pl~----~GaDivv~S~tK~l~Gh 212 (394)
T PRK09028 157 SITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINSRPFE----MGVDISIQAATKYIVGH 212 (394)
T ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEECCccccccCCccc----cCceEEEEeCCeEecCC
Confidence 347889999999999999999999999876544332221 24899999999999877
No 124
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=95.81 E-value=0.012 Score=47.47 Aligned_cols=55 Identities=9% Similarity=-0.005 Sum_probs=42.7
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP 65 (98)
.+|.+=|+++|.++|+++|+++.||.+.+...... .. ...+|-++..++|+++-+
T Consensus 161 Ptg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~--~l--~~~~Divv~S~sK~l~g~ 215 (398)
T PRK08249 161 PTLKIVDIERLAAAAKKVGALVVVDNTFATPINQN--PL--ALGADLVIHSATKFLSGH 215 (398)
T ss_pred CCCccCCHHHHHHHHHHcCCEEEEECCcCccccCC--ch--hhCCCEEeccCceecCCC
Confidence 47888899999999999999999999865332211 11 135788889999999976
No 125
>PRK07582 cystathionine gamma-lyase; Validated
Probab=95.81 E-value=0.014 Score=46.35 Aligned_cols=55 Identities=11% Similarity=-0.054 Sum_probs=40.9
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP 65 (98)
.+|.+-|+++|+++|+++|+++-||.+........ .++ ..+|=++...+|||+-|
T Consensus 144 Ptg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~--p~~--~g~Divv~S~sK~l~G~ 198 (366)
T PRK07582 144 PGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQR--PLE--LGADLVVASDTKALTGH 198 (366)
T ss_pred CCCCccCHHHHHHHHHHcCCEEEEECCCCCccccC--chh--cCCcEEEecccccccCC
Confidence 35778899999999999999999999764322111 111 24688999999999765
No 126
>PRK08064 cystathionine beta-lyase; Provisional
Probab=95.78 E-value=0.021 Score=45.86 Aligned_cols=68 Identities=10% Similarity=-0.007 Sum_probs=48.5
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC-CCeeEEecCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS-LPSPARTQRV 77 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~-~~~~ll~r~~ 77 (98)
..+|.+-|+++|.++|+++|+++-||.+.+......+.. -.+|=+...+|||++-|-+ .+.+++.+++
T Consensus 149 NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~~----~g~Divv~S~tK~~~G~~~~laG~~v~~~~ 217 (390)
T PRK08064 149 NPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPLD----LGADVVLHSATKFLAGHSDVLAGLAVVKDE 217 (390)
T ss_pred CCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCchh----hCCcEEEeecceeccCCccceeEEEEeCCH
Confidence 347889999999999999999999999865433221111 1368888999999987633 2455555543
No 127
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=95.71 E-value=0.019 Score=45.38 Aligned_cols=69 Identities=7% Similarity=-0.049 Sum_probs=45.5
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV 77 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~ 77 (98)
.+|..-++++|.++|++||+++-+|++.+.................++++.+.|.+... .+.+++..++
T Consensus 128 ~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~~~~~~~Sf~~~K~l~~g--~gG~~~~~~~ 196 (375)
T PRK11706 128 YAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTAG--EGGALLINDP 196 (375)
T ss_pred CCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeeecCcCEEEEeCCCCcccccc--CCeEEEECCH
Confidence 46777899999999999999999999743332222222222334456666666999665 4556666543
No 128
>PRK10534 L-threonine aldolase; Provisional
Probab=95.64 E-value=0.0065 Score=46.31 Aligned_cols=61 Identities=25% Similarity=0.262 Sum_probs=39.1
Q ss_pred ccccccCCChHHH---HHHHHHcCceEEeecccchhhhcC-CCCCCCC-ccCccccccCccccCCC
Q psy2484 5 SSLNGHVDNVSLL---QEICAKYNLWLHLRGHNLSSLALN-SHSPSPL-QPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 5 tt~~Ga~D~l~~i---~~ic~~~~lWlHVDga~~~al~~~-~~~~~gi-~~ADS~t~d~HKwL~vP 65 (98)
++++|.+-|.++| .++|++|++|++||.++....... ......+ +..|.+++.++|.++++
T Consensus 137 np~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~ 202 (333)
T PRK10534 137 NTHNGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTP 202 (333)
T ss_pred cCCCCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCc
Confidence 4567888776655 568899999999999744221100 1111111 23476777899999988
No 129
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=95.44 E-value=0.034 Score=45.00 Aligned_cols=65 Identities=8% Similarity=-0.041 Sum_probs=47.0
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQR 76 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~ 76 (98)
.+|.+=|+++|+++|+++|+++=||.+........... . .+|=++..++||++.. +. +.+++.++
T Consensus 167 ptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~~~-~---gaDivv~S~tK~l~g~-g~~~gG~v~~~~ 233 (403)
T PRK07810 167 PMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLP-L---GADVVVYSGTKHIDGQ-GRVLGGAILGDR 233 (403)
T ss_pred CCCeecCHHHHHHHHHHcCCEEEEECCCCccccCChhh-c---CCcEEEccCCceecCC-cCceeEEEEeCh
Confidence 47888899999999999999999999864332211111 1 3788899999999886 53 34555444
No 130
>PRK15029 arginine decarboxylase; Provisional
Probab=95.44 E-value=0.02 Score=50.77 Aligned_cols=71 Identities=15% Similarity=0.055 Sum_probs=53.9
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC-C-CCCC-------ccCc-cccccCccccCCCCCCCeeEEec
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-S-PSPL-------QPGH-SVSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~-~~gi-------~~AD-S~t~d~HKwL~vP~~~~~~ll~r 75 (98)
|..|.+=++++|+++|+++++-|+||-|.|+-+.+.+. + ...+ ..|| =++=..||.|..- .-++++-.|
T Consensus 322 TY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~al-TQaS~LHv~ 400 (755)
T PRK15029 322 TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNAL-SQASYIHVR 400 (755)
T ss_pred CCcceeeCHHHHHHHHHhcCCeEEEECccccccccCccccccccccccccccCCCceEEEEchhhcccch-hhhhhheeC
Confidence 66788999999999999999999999987776555443 2 2334 3588 7777999999987 555666665
Q ss_pred CC
Q psy2484 76 RV 77 (98)
Q Consensus 76 ~~ 77 (98)
..
T Consensus 401 ~~ 402 (755)
T PRK15029 401 EG 402 (755)
T ss_pred CC
Confidence 43
No 131
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=95.43 E-value=0.018 Score=45.63 Aligned_cols=59 Identities=10% Similarity=0.093 Sum_probs=39.5
Q ss_pred cccccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCC-ccCccccccCcccc
Q psy2484 4 GSSLNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPL-QPGHSVSLPLGTWL 62 (98)
Q Consensus 4 Gtt~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi-~~ADS~t~d~HKwL 62 (98)
|+...|.+ .||.+|.++|++||.|+-||-+++............. ..+|=++..++|+|
T Consensus 144 g~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKal 206 (346)
T TIGR03576 144 GSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLM 206 (346)
T ss_pred CCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhc
Confidence 45566777 8999999999999999999998654332110110000 12566777899976
No 132
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=95.37 E-value=0.025 Score=45.26 Aligned_cols=69 Identities=6% Similarity=-0.044 Sum_probs=43.8
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
.+|..=++++|.++|++||+++-+|++.+...........-+....++.+.+-|-+..- .-+.+++.++
T Consensus 128 ~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~~~~~~fSf~~~K~l~~g-~~gG~v~~~~ 196 (376)
T TIGR02379 128 YAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYKGRALGSIGHLGTFSFHETKNYTSG-GEGGALLIND 196 (376)
T ss_pred CCCCccCHHHHHHHHHHCCCEEEEECccccCCccCCcccCCCCCEEEEeCCCCCcCccc-CCceEEEECC
Confidence 45777799999999999999999999743322122222332334556777776766442 1345555554
No 133
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=95.23 E-value=0.039 Score=44.12 Aligned_cols=67 Identities=6% Similarity=-0.122 Sum_probs=49.1
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecCCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQRVP 78 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~~~ 78 (98)
.+|.+-++++|+++|+++|+|+=||.+.+..+... .+ -..||=++...+||++-+ +. +.+++.++++
T Consensus 148 Ptg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~~--pl--~~gaDivv~S~tK~l~g~-~d~~gG~v~~~~~~ 216 (364)
T PRK07269 148 PLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQR--PI--ELGADIVLHSATKYLSGH-NDVLAGVVVTNDLE 216 (364)
T ss_pred CCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCC--ch--hhCCcEEEecCceeccCC-CcccceEEEeCcHH
Confidence 35777799999999999999999999854433221 11 135889999999999987 43 5566665543
No 134
>PRK05367 glycine dehydrogenase; Provisional
Probab=95.15 E-value=0.028 Score=50.88 Aligned_cols=58 Identities=10% Similarity=0.067 Sum_probs=43.7
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS 67 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~ 67 (98)
..+|.+.|+++|+++|+++|.++=||+.-.+..++.. .|--.||=++.+.|||+ +|++
T Consensus 216 ~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~---pge~GaDi~vgs~qkfg-~P~g 273 (954)
T PRK05367 216 GTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTP---PGEMGADIAVGSAQRFG-VPMG 273 (954)
T ss_pred CCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCC---hhhcCCCEEEeeCcccC-CCCC
Confidence 4689999999999999999999999984222222221 25556899999999995 5544
No 135
>PRK06460 hypothetical protein; Provisional
Probab=95.07 E-value=0.032 Score=44.55 Aligned_cols=53 Identities=11% Similarity=0.076 Sum_probs=39.9
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLN 63 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~ 63 (98)
.+|.+=|+++|+++|+++|+++.||.+....... ..+ ...+|=+...++||++
T Consensus 142 PtG~v~d~~~I~~la~~~g~~vivDea~~~~~~~--~~l--~~~~divv~S~sK~l~ 194 (376)
T PRK06460 142 PLLRVVDITELSKVCKENGSILIVDATFSTPINQ--KPL--ELGADIVVHSASKFLA 194 (376)
T ss_pred CCCcccCHHHHHHHHHHcCCEEEEECCcCccccC--Chh--hcCCCEEEeecceecc
Confidence 4788889999999999999999999976432111 111 1237888899999997
No 136
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=94.77 E-value=0.055 Score=44.26 Aligned_cols=63 Identities=8% Similarity=0.033 Sum_probs=46.0
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEE
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPAR 73 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll 73 (98)
..+|.+=|+++|.++|++||+++=||.+.+....... + -..+|=+....+||++-+ +. +.+++
T Consensus 154 NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~~p--~--~~gaDivv~S~tK~l~G~-g~~~gG~v~ 218 (425)
T PRK06084 154 NPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCRP--F--EHGADIVVHSLTKYIGGH-GTSIGGIVV 218 (425)
T ss_pred CCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCh--h--hcCCCEEEECchhccccc-ccceeEEEE
Confidence 4577877899999999999999999997654332211 1 124898889999999887 43 44444
No 137
>PLN02822 serine palmitoyltransferase
Probab=94.70 E-value=0.049 Score=45.14 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=43.8
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC-C----CCCC--ccCccccccCccccCCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-S----PSPL--QPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~----~~gi--~~ADS~t~d~HKwL~vP 65 (98)
++|.+=|+++|+++|++||+||-+|-+.+... +.+. + .-|+ +..|=++...+|.++.+
T Consensus 257 ~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gv-lG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~ 321 (481)
T PLN02822 257 NSGQIAPLDEIVRLKEKYRFRVLLDESNSFGV-LGKSGRGLSEHFGVPIEKIDIITAAMGHALATE 321 (481)
T ss_pred CCCCccCHHHHHHHHHHcCCEEEEECCccccc-cCCCCCChHHHcCCCCCCCeEEEecchhhhhhC
Confidence 47999999999999999999999999754222 2211 1 2244 46787888899999977
No 138
>PRK06434 cystathionine gamma-lyase; Validated
Probab=94.63 E-value=0.048 Score=44.28 Aligned_cols=64 Identities=13% Similarity=0.057 Sum_probs=46.2
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEecCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQRV 77 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r~~ 77 (98)
.++.+-|+++|+++|++++++ ||+..++..... .+. ..||=++..+||+++-+ +. +.+++.+++
T Consensus 160 pt~~v~Di~~I~~la~~~~lv--VD~t~~s~~~~~--pl~--~gaDivv~S~tK~i~G~-~d~~gG~vv~~~~ 225 (384)
T PRK06434 160 PTLKVPDIKNVSSFCHENDVI--VDATFASPYNQN--PLD--LGADVVIHSATKYISGH-SDVVMGVAGTNNK 225 (384)
T ss_pred CCceeecHHHHHHHHHHcCeE--EECCCCCcccCC--chh--cCCCEEEeecccccCCC-CCceEEEEecCcH
Confidence 467788999999999999965 699854332211 121 35999999999999988 53 556666554
No 139
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=94.60 E-value=0.047 Score=42.90 Aligned_cols=63 Identities=16% Similarity=0.053 Sum_probs=38.7
Q ss_pred ccccCCC----hHHHHHHHHHcCceEEeeccc-chhhhcCCC---CCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484 7 LNGHVDN----VSLLQEICAKYNLWLHLRGHN-LSSLALNSH---SPSPLQPGHSVSLPLGTWLNLPLSLPSPAR 73 (98)
Q Consensus 7 ~~Ga~D~----l~~i~~ic~~~~lWlHVDga~-~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll 73 (98)
.+|.+-| +++|+++|++||++|.+|-+. |... ..+. ...|+ ..|-+++ .|+|+-.+-++.++.
T Consensus 195 ~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr-~g~~~~~~~~~~-~pDi~t~--sK~l~~G~~ig~~~~ 265 (398)
T PRK03244 195 EAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGR-TGAWFAHQHDGV-TPDVVTL--AKGLGGGLPIGACLA 265 (398)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcc-cchHHhhhhhCC-CCCEEEE--chhhhCCcccEEEEE
Confidence 3566655 999999999999999999963 2211 1100 12344 3665544 799984322444444
No 140
>PRK06234 methionine gamma-lyase; Provisional
Probab=94.57 E-value=0.076 Score=42.75 Aligned_cols=64 Identities=8% Similarity=-0.015 Sum_probs=46.5
Q ss_pred ccccCCChHHHHHHHHHc--CceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC--CeeEEec
Q psy2484 7 LNGHVDNVSLLQEICAKY--NLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL--PSPARTQ 75 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~--~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~--~~~ll~r 75 (98)
.+|.+-|+++|.++|+++ |+|+-||.+++...... . + + ..+|=+...++|+++.+ +. +.+++.+
T Consensus 161 PtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~-~-l-~-~g~Divv~S~sK~l~g~-g~~~gG~v~~~ 228 (400)
T PRK06234 161 PTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQR-P-L-Q-LGADVVVHSATKYLNGH-GDVIAGFVVGK 228 (400)
T ss_pred CCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCC-c-h-h-hCCcEEEeeccccccCC-CCceeEEEEec
Confidence 478888999999999997 99999999865433211 1 1 1 14788888899999988 53 3444444
No 141
>PRK08114 cystathionine beta-lyase; Provisional
Probab=94.52 E-value=0.051 Score=44.52 Aligned_cols=57 Identities=9% Similarity=-0.034 Sum_probs=45.8
Q ss_pred ccccccCCChHHHHHHHHHcC--ceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484 5 SSLNGHVDNVSLLQEICAKYN--LWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~ic~~~~--lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP 65 (98)
+..+|.+=||++|+++|+++| +.+-||+..+....+....+ .||=+....||||+-+
T Consensus 157 sNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~----GaDivv~S~tKyl~Gh 215 (395)
T PRK08114 157 GSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDF----GIDISIQAGTKYLVGH 215 (395)
T ss_pred CCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHc----CCcEEEEcCcccccCC
Confidence 455788889999999999985 99999997655544332222 3999999999999999
No 142
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=94.27 E-value=0.085 Score=41.85 Aligned_cols=59 Identities=10% Similarity=0.061 Sum_probs=39.8
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCC-ccCccccccCccccCCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPL-QPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi-~~ADS~t~d~HKwL~vP 65 (98)
.+|.+-|+++|.++|++||+++.||.+.+.++.-+..+ ..++ ++.|=+.-.+.|.++.+
T Consensus 189 ~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~ 252 (406)
T PRK13393 189 MDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVM 252 (406)
T ss_pred CCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhccc
Confidence 46888899999999999999999999744333222211 1122 22343334788999987
No 143
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=94.21 E-value=0.011 Score=45.29 Aligned_cols=60 Identities=8% Similarity=0.049 Sum_probs=40.1
Q ss_pred ccccccCCChHHHHHHHHHc--CceEEeecccchhhhcCCC---CCCCCccCccc-cccCccccCCCCCC
Q psy2484 5 SSLNGHVDNVSLLQEICAKY--NLWLHLRGHNLSSLALNSH---SPSPLQPGHSV-SLPLGTWLNLPLSL 68 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~ic~~~--~lWlHVDga~~~al~~~~~---~~~gi~~ADS~-t~d~HKwL~vP~~~ 68 (98)
...+|.+=|++++.++|+.+ |+++.+|.++.. +...+. ..... .+.+ ...++||++.| +.
T Consensus 152 ~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~-~~~~~~~~~~~~~~--~~~i~~~S~sK~~g~~-G~ 217 (346)
T TIGR01141 152 NNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGE-FSGEPSTLPLLAEY--PNLIVLRTLSKAFGLA-GL 217 (346)
T ss_pred CCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhh-hcCCccHHHHHhhC--CCEEEEehhhHhhhch-hh
Confidence 34688999999999999987 999999997542 111111 11111 1223 45889999988 64
No 144
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=93.96 E-value=0.1 Score=40.61 Aligned_cols=62 Identities=19% Similarity=0.138 Sum_probs=38.0
Q ss_pred cccCCC----hHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCccccccCccccCCCCCCCeeE
Q psy2484 8 NGHVDN----VSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHSVSLPLGTWLNLPLSLPSPA 72 (98)
Q Consensus 8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP~~~~~~l 72 (98)
+|.+-| +++|+++|++||+++.+|.+..+.....+. ...++ ..|=+ ...|+|+..+-++.++
T Consensus 204 ~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~-~~d~~--t~sK~l~~g~~~g~~~ 272 (413)
T cd00610 204 GGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGV-EPDIV--TLGKGLGGGLPLGAVL 272 (413)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCC-CCCeE--EEcccccCccccEEEE
Confidence 466666 999999999999999999963321011111 11232 34533 4469999764455443
No 145
>PRK06225 aspartate aminotransferase; Provisional
Probab=93.82 E-value=0.082 Score=41.30 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=37.0
Q ss_pred cccc---CCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCc-cCccccccCccccCCCCCC
Q psy2484 7 LNGH---VDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQ-PGHSVSLPLGTWLNLPLSL 68 (98)
Q Consensus 7 ~~Ga---~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~-~ADS~t~d~HKwL~vP~~~ 68 (98)
.+|. .+++++|.++|+++|+++.+|.++.-. .........+. ...-....+.|+|+.| +.
T Consensus 169 ptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~~i~~~s~SK~~g~~-G~ 232 (380)
T PRK06225 169 PLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDF-AREHTLAAEYAPEHTVTSYSFSKIFGMA-GL 232 (380)
T ss_pred CCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHH-hccCCchhhcCCCCEEEEeechhhcCCc-cc
Confidence 3565 357999999999999999999975321 11111111111 1122344678999998 75
No 146
>PLN02483 serine palmitoyltransferase
Probab=93.82 E-value=0.11 Score=43.19 Aligned_cols=60 Identities=10% Similarity=0.099 Sum_probs=41.8
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCC--ccCccccccCccccCCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPL--QPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi--~~ADS~t~d~HKwL~vP 65 (98)
...|.+-++++|.++|++||+||-+|.+......-+..+ ..++ ...|=+.-.++|.++.+
T Consensus 251 s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~ 316 (489)
T PLN02483 251 SMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSC 316 (489)
T ss_pred CCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccC
Confidence 346788899999999999999999999753221111111 1233 34566667999999987
No 147
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=93.75 E-value=0.069 Score=42.28 Aligned_cols=54 Identities=11% Similarity=0.049 Sum_probs=41.6
Q ss_pred cccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484 8 NGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 8 ~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP 65 (98)
+|...++++|.++|+++|+|+-||.+++......+ . -..+|=++-.+.|+++-+
T Consensus 149 ~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p--~--~~g~di~i~S~sK~~~g~ 202 (366)
T PRK08247 149 LMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRP--L--EEGADIVIHSATKYLGGH 202 (366)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCCccccccCc--h--hcCCcEEEeecceeccCC
Confidence 67888999999999999999999998754332211 1 134788888899999865
No 148
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=93.73 E-value=0.048 Score=41.91 Aligned_cols=60 Identities=8% Similarity=0.070 Sum_probs=40.8
Q ss_pred ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCC-CccCcccc--ccCccccCCCCCC
Q psy2484 5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSP-LQPGHSVS--LPLGTWLNLPLSL 68 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~g-i~~ADS~t--~d~HKwL~vP~~~ 68 (98)
...+|.+-|.++|.++|+++|+|+.+|.++.... ... ... ....|.+. -.+.|-+++| +.
T Consensus 168 ~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~--~~~-~~~~~~~~~~vi~~~S~SK~~g~~-Gl 230 (361)
T PRK00950 168 NNPTGNLIPEEDIRKILESTDALVFVDEAYVEFA--EYD-YTPLALEYDNLIIGRTFSKVFGLA-GL 230 (361)
T ss_pred CCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhC--ccc-hHHHHHhcCCEEEEEeehHhhcCc-hh
Confidence 3468999999999999999999999999864321 111 111 11223332 2678999998 64
No 149
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=93.70 E-value=0.11 Score=42.60 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=43.6
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRV 77 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~ 77 (98)
..|..-++++|.++|++||+++-+|++-.........+...+-.+=.+.+.+.|-+.. +-+.+++.+++
T Consensus 168 ~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~gd~~~fSf~~~k~~~~--geGG~l~t~d~ 236 (438)
T PRK15407 168 TLGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFGDIATLSFYPAHHITM--GEGGAVFTNDP 236 (438)
T ss_pred CCCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccCceEEEeCCCCCCccc--cCceEEEECCH
Confidence 3567779999999999999999999964333222222222222233455666676543 44667777654
No 150
>PRK06108 aspartate aminotransferase; Provisional
Probab=93.63 E-value=0.098 Score=40.41 Aligned_cols=57 Identities=7% Similarity=0.039 Sum_probs=36.0
Q ss_pred CCChHHHHHHHHHcCceEEeecccchhhhcCCCC---CCCCcc---CccccccCccccCCCCCC
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS---PSPLQP---GHSVSLPLGTWLNLPLSL 68 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~---~~gi~~---ADS~t~d~HKwL~vP~~~ 68 (98)
.+++++|.++|+++|+|+.+|.++.....-++.. ...+.. -.=+...++|.+++| +.
T Consensus 177 ~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~-G~ 239 (382)
T PRK06108 177 RDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMT-GW 239 (382)
T ss_pred HHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCc-cc
Confidence 4568999999999999999999754332211111 111111 112345899999988 74
No 151
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=93.60 E-value=0.1 Score=43.19 Aligned_cols=69 Identities=12% Similarity=0.014 Sum_probs=49.2
Q ss_pred CcccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484 3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r 75 (98)
=..|.||...|+.+|+++|++||.-+=||+. ..++-=+ +.+ -=..|=+..-.+|.|+.|=+.+.+.+.+
T Consensus 139 H~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~---~vd-~wgiDv~itgSQK~l~~PPGla~v~~S~ 208 (383)
T COG0075 139 HNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPL---KVD-EWGIDVAITGSQKALGAPPGLAFVAVSE 208 (383)
T ss_pred eccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCccc---chh-hcCccEEEecCchhccCCCccceeEECH
Confidence 3579999999999999999999999999994 2222111 111 0024666777899999986776655543
No 152
>PRK09082 methionine aminotransferase; Validated
Probab=93.50 E-value=0.087 Score=41.41 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=38.8
Q ss_pred ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC--C---CCCCccCccccccCccccCCCCCC
Q psy2484 7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH--S---PSPLQPGHSVSLPLGTWLNLPLSL 68 (98)
Q Consensus 7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~---~~gi~~ADS~t~d~HKwL~vP~~~ 68 (98)
.+|.+ +++++|.++|++||+|+.+|-+++-...-.+. . ..+...-.=+...+.|.+++| +.
T Consensus 175 PtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~-G~ 243 (386)
T PRK09082 175 PSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVT-GW 243 (386)
T ss_pred CCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccch-hh
Confidence 46654 78999999999999999999986433221111 1 122211112233678999998 74
No 153
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=93.46 E-value=0.1 Score=43.75 Aligned_cols=74 Identities=18% Similarity=0.175 Sum_probs=56.6
Q ss_pred CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecCCC
Q psy2484 3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVP 78 (98)
Q Consensus 3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~~ 78 (98)
+|.+..--.=|++++++||++-|.+|=+|.+=-+.|+....--+-+..||=+|-.-||.|.=| . +.+++.++++
T Consensus 172 ~G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~AdvVTtTTHKTlrGP-r-GG~Il~~~ee 245 (413)
T COG0112 172 AGGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTLRGP-R-GGIILTNDEE 245 (413)
T ss_pred ECccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCccceEeCCcccCCCCC-C-ceEEEeccHH
Confidence 455555566789999999999999999999755555544333356778999999999999999 3 5566777643
No 154
>PRK05764 aspartate aminotransferase; Provisional
Probab=93.41 E-value=0.12 Score=40.21 Aligned_cols=67 Identities=6% Similarity=0.099 Sum_probs=40.5
Q ss_pred cccC---CChHHHHHHHHHcCceEEeecccchhhhcCCCC---CCCC--cc--CccccccCccccCCCCCCCeeEEecC
Q psy2484 8 NGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS---PSPL--QP--GHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 8 ~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~---~~gi--~~--ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
+|.+ +++++|.++|++||+|+.+|-+++... ..... ...+ +. -+=....+.|.+++| +.-.-.+..+
T Consensus 177 tG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~-G~RiG~i~~~ 253 (393)
T PRK05764 177 TGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLV-YDGAEFTSIASLSPELRDRTITVNGFSKAYAMT-GWRLGYAAGP 253 (393)
T ss_pred CCcccCHHHHHHHHHHHHHCCcEEEEecccccee-eCCCCcccHHHcCCCCcCCEEEEecCcccccCc-cceeEEEecC
Confidence 5665 678999999999999999999764322 21111 1111 11 112233578999999 7533344333
No 155
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=93.29 E-value=0.041 Score=42.44 Aligned_cols=59 Identities=20% Similarity=0.216 Sum_probs=38.4
Q ss_pred ccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCCCCCCC---ccCccccccCccccCCCCCC
Q psy2484 7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPL---QPGHSVSLPLGTWLNLPLSL 68 (98)
Q Consensus 7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi---~~ADS~t~d~HKwL~vP~~~ 68 (98)
.+|.+=+ +.+|+++|+++|+|+.+|.++.... +....... ...+=+...++|+++.| +.
T Consensus 137 PtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~g~~-G~ 201 (330)
T TIGR01140 137 PTGRLIPPETLLALAARLRARGGWLVVDEAFIDFT--PDASLAPQAARFPGLVVLRSLTKFFGLA-GL 201 (330)
T ss_pred CCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccC--CccchhhHhccCCCEEEEEecchhhcCc-hh
Confidence 4566556 7778888999999999999865332 11111111 12234455899999999 75
No 156
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=93.16 E-value=0.16 Score=39.71 Aligned_cols=55 Identities=25% Similarity=0.281 Sum_probs=35.6
Q ss_pred cccCCC----hHHHHHHHHHcCceEEeeccc-chhh---hcCCCCCCCCccCccccccCccccCCCC
Q psy2484 8 NGHVDN----VSLLQEICAKYNLWLHLRGHN-LSSL---ALNSHSPSPLQPGHSVSLPLGTWLNLPL 66 (98)
Q Consensus 8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~-~~al---~~~~~~~~gi~~ADS~t~d~HKwL~vP~ 66 (98)
+|.+=| +++|+++|++||++|.+|... +... .+. ....++ ..|-+++ .|+|+-++
T Consensus 191 ~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~-~~~~~~-~pd~~~~--sK~l~~g~ 253 (400)
T PTZ00125 191 AGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLA-HDHEGV-KPDIVLL--GKALSGGL 253 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhH-HHhcCC-CCCEEEE--cccccCCC
Confidence 455555 999999999999999999963 2111 001 012344 3566654 59998653
No 157
>PRK07777 aminotransferase; Validated
Probab=93.10 E-value=0.19 Score=39.29 Aligned_cols=62 Identities=5% Similarity=-0.033 Sum_probs=40.0
Q ss_pred CChHHHHHHHHHcCceEEeecccchhhhcCCC-----CCCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-----SPSPLQPGHSVSLPLGTWLNLPLSLPSPART 74 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-----~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~ 74 (98)
+++++|.++|++|++|+-+|.++.....-... ...+...-+=+...+.|.+++| +.-.-.+.
T Consensus 179 ~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~-GlRiG~~~ 245 (387)
T PRK07777 179 AELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVT-GWKIGWAC 245 (387)
T ss_pred HHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCc-CceeEEEe
Confidence 67999999999999999999976432211111 1222222334467799999999 75333333
No 158
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=93.07 E-value=0.079 Score=40.89 Aligned_cols=53 Identities=13% Similarity=0.190 Sum_probs=33.7
Q ss_pred cCCChHHHHHHHHHcCceEEeecccchhhhcCCC----CCCCCccCccccccCccccCCCCCC
Q psy2484 10 HVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH----SPSPLQPGHSVSLPLGTWLNLPLSL 68 (98)
Q Consensus 10 a~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~----~~~gi~~ADS~t~d~HKwL~vP~~~ 68 (98)
..+++++|.++|++||+|+.+|.+... +..... ...++ ..|-+ ...|.++ | +.
T Consensus 189 ~~~~l~~i~~l~~~~~~~~i~De~~~~-~~~~g~~~~~~~~~~-~~d~~--t~sK~~~-~-G~ 245 (379)
T TIGR00707 189 SAEFLKALREICKDKDALLIFDEVQTG-IGRTGKFFAYEHYGI-EPDII--TLAKGLG-G-GV 245 (379)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccccC-CCccchhhhHHhcCC-CCCEE--EEccccc-C-Cc
Confidence 345689999999999999999997532 111111 01122 23544 4699999 6 54
No 159
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=92.94 E-value=0.14 Score=46.95 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=42.5
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS 67 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~ 67 (98)
.+|.+.|+++|+++|+++|+.+=| |+-..++..-+. .|--.||=++-+.|||+ +|++
T Consensus 245 ~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~~--pge~GADi~vgsgqKwg-~P~G 301 (993)
T PLN02414 245 TDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLKP--PGEWGADIVVGSAQRFG-VPMG 301 (993)
T ss_pred CCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCCC--HhhccCcEEEECCCccc-cCCC
Confidence 589999999999999999999999 653333322211 23335888999999997 7765
No 160
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=92.92 E-value=0.23 Score=40.03 Aligned_cols=67 Identities=9% Similarity=-0.053 Sum_probs=46.9
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC-CeeEEecCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL-PSPARTQRV 77 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~-~~~ll~r~~ 77 (98)
.+|.+=|+++|.++|+++|+++=||.++..... ... +. ..||=++...+||++=+-++ +.+++.+++
T Consensus 149 PtG~v~di~~I~~ia~~~g~~vivDeay~~~~~-~~p-l~--~gaDivv~S~tK~l~G~~d~~~G~vi~~~~ 216 (386)
T PRK08045 149 PLLRVVDIAKICHLAREAGAVSVVDNTFLSPAL-QNP-LA--LGADLVLHSCTKYLNGHSDVVAGVVIAKDP 216 (386)
T ss_pred CCCEecCHHHHHHHHHHcCCEEEEECCCCcccc-CCc-hh--hCCCEEEeecceeccCCCCceeEEEEeCcH
Confidence 478888899999999999999999998654432 111 11 24687888999999865232 344555443
No 161
>PRK08361 aspartate aminotransferase; Provisional
Probab=92.53 E-value=0.18 Score=39.60 Aligned_cols=65 Identities=9% Similarity=0.089 Sum_probs=41.9
Q ss_pred cccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCC-ccCccccccCccccCCCCC--CCeeE
Q psy2484 6 SLNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPL-QPGHSVSLPLGTWLNLPLS--LPSPA 72 (98)
Q Consensus 6 t~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi-~~ADS~t~d~HKwL~vP~~--~~~~l 72 (98)
.-+|.+=| +.+|.++|+++++|+++|.++..... .+. ..... ..-+=++..++|.+++| + ++.++
T Consensus 177 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~i~~~s~SK~~~~~-GlRiG~~~ 250 (391)
T PRK08361 177 NPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLY-EGAKHYPMIKYAPDNTILANSFSKTFAMT-GWRLGFVI 250 (391)
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCeEEEEEccccccee-CCCCCCCHhhcCCCCEEEEecCchhcCCc-Hhhhhhhc
Confidence 34677767 88899999999999999997643221 111 11111 11233557889999999 7 45433
No 162
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=92.36 E-value=0.042 Score=43.18 Aligned_cols=62 Identities=11% Similarity=0.031 Sum_probs=37.9
Q ss_pred CCcccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484 2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r 75 (98)
|-.+|.+|.. +.+++++||+.+=||+. ..+..-+. ++..|-...-.||||| |.+.+.+++.+
T Consensus 145 ~h~~t~tG~~-----~~~i~~~~g~~~~VDa~qs~g~~~id------v~~~~~~~ss~~K~lG-P~G~g~l~~~~ 207 (355)
T cd00611 145 CSNETIHGVE-----FDEVPDTGGVPLVADMSSNILSRPID------VSKFGVIYAGAQKNLG-PAGVTVVIVRK 207 (355)
T ss_pred eCCcccccEE-----cceecccCCCeEEEEccccccCCCCC------HHHhCEEEeecccccC-CCceEEEEECH
Confidence 4567888886 23566679999999995 33333221 2222323333899999 54887555544
No 163
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=92.22 E-value=0.11 Score=41.07 Aligned_cols=60 Identities=12% Similarity=0.054 Sum_probs=37.8
Q ss_pred ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCccc--cccCccccCCCCCC
Q psy2484 7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHSV--SLPLGTWLNLPLSL 68 (98)
Q Consensus 7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS~--t~d~HKwL~vP~~~ 68 (98)
.+|.+ +++++|.++|+++|+|+++|.++.-... .+. .+..+..-+.+ .-.+-|-++.| +.
T Consensus 181 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~vi~~~S~SK~~~~p-Gl 248 (403)
T TIGR01265 181 PCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVF-GDAPFIPMASFASIVPVLSLGGISKRWVVP-GW 248 (403)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccc-CCCCccchhhhccCCcEEEEeecccccCCC-cc
Confidence 46666 5699999999999999999998653321 211 11122111112 23678999999 75
No 164
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=92.03 E-value=0.064 Score=42.57 Aligned_cols=62 Identities=13% Similarity=-0.001 Sum_probs=43.1
Q ss_pred CCcccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484 2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r 75 (98)
|-..|.+|..-| ++++++++.+=||+. ..++.-+. ++..|=++...||+|+ |-+.+.+.+.+
T Consensus 137 th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~~~id------~~~~d~~~~ssqK~lg-P~Glg~l~~s~ 199 (349)
T TIGR01364 137 CANETIHGVEFR-----ELPDVKNAPLVADMSSNILSRPID------VSKFGLIYAGAQKNIG-PAGLTVVIVRK 199 (349)
T ss_pred cCCCCcccEecc-----eecccCCCeEEEEccccccCccCC------HHHccEEEEecccccC-CCceEEEEECH
Confidence 556788998765 677788999999995 33332221 2335688999999999 54776554443
No 165
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=91.99 E-value=0.071 Score=42.42 Aligned_cols=61 Identities=8% Similarity=-0.011 Sum_probs=42.4
Q ss_pred CCcccccccCC-ChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484 2 EIGSSLNGHVD-NVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 2 taGtt~~Ga~D-~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r 75 (98)
|--.|.+|... |+.+| ||..+=||+. ..++.-+. ++..|=++...||||+ |-+.+.+.+.+
T Consensus 148 th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~id------v~~~d~~~~ssqK~lg-P~Glg~l~~s~ 210 (360)
T PRK05355 148 TSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPID------VSKFGLIYAGAQKNIG-PAGLTIVIVRE 210 (360)
T ss_pred ccCCCcceEecCccccc------CCCcEEEEcCccccCccCC------HHHccEEEEecccccc-CCceEEEEECH
Confidence 44678999996 77766 8999999995 33333222 2234689999999999 64776554443
No 166
>PF05670 DUF814: Domain of unknown function (DUF814); InterPro: IPR008532 This domain occurs in proteins that have been annotated as Fibronectin/fibrinogen binding protein by similarity. This annotation comes from O34693 from SWISSPROT where the N-terminal region is involved in this activity []. Hence the activity of this C-terminal domain is unknown. This domain contains a conserved motif D/E-X-W/Y-X-H that may be functionally important.
Probab=91.45 E-value=0.12 Score=33.93 Aligned_cols=48 Identities=15% Similarity=0.315 Sum_probs=34.7
Q ss_pred HHHHHHcCceEEeecccchhhhcCCCCCC----CCccCccccccCcc-ccCCC
Q psy2484 18 QEICAKYNLWLHLRGHNLSSLALNSHSPS----PLQPGHSVSLPLGT-WLNLP 65 (98)
Q Consensus 18 ~~ic~~~~lWlHVDga~~~al~~~~~~~~----gi~~ADS~t~d~HK-wL~vP 65 (98)
..+++..++|||++...|+..++...... -++.|=.++.---| |=.-.
T Consensus 24 ~k~~~~~D~wfH~~~~pg~hvil~~~~~~~~~~~l~~AA~laa~~Ska~~~~~ 76 (90)
T PF05670_consen 24 KKYARPNDLWFHADDFPGPHVILRNNPGDEPPPTLQEAAQLAASYSKAWKKGE 76 (90)
T ss_pred HHhhhhcceeEeccCCCCCEEEEECCCCccchHHHHHHHHHHHHhCHhhccCC
Confidence 68899999999999999999888866321 35666666665555 44333
No 167
>PRK05967 cystathionine beta-lyase; Provisional
Probab=91.07 E-value=0.2 Score=41.01 Aligned_cols=54 Identities=6% Similarity=-0.026 Sum_probs=38.8
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLN 63 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~ 63 (98)
..++.+.||++|+++|+++|+|+-||..+.......+.. -.||=+.-..-|+++
T Consensus 160 NP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~~pl~----~GaDivv~S~tKy~~ 213 (395)
T PRK05967 160 SNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYFRPLD----FGVDISIHAATKYPS 213 (395)
T ss_pred CCCCcHHHHHHHHHHHHHhCCEEEEECCccCceecChhH----cCCCEEEEecccccC
Confidence 347889999999999999999999999865443332211 126666667777744
No 168
>PLN02656 tyrosine transaminase
Probab=90.72 E-value=0.19 Score=40.08 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=39.1
Q ss_pred cccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCCC---CCCCccC-cccc-ccCccccCCCCCC
Q psy2484 6 SLNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS---PSPLQPG-HSVS-LPLGTWLNLPLSL 68 (98)
Q Consensus 6 t~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~---~~gi~~A-DS~t-~d~HKwL~vP~~~ 68 (98)
..+|.+ +++++|.++|++||+|+.+|.++.-.. ..+.. ...++.. ..|. -.+.|-+++| +.
T Consensus 180 NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~p-Gl 248 (409)
T PLN02656 180 NPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLA-FGSNPFVPMGVFGSIVPVLTLGSLSKRWIVP-GW 248 (409)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcc-cCCCCcccHHHhcccCcEEEEcccchhccCc-ce
Confidence 356766 789999999999999999999865322 22211 1111111 1233 3578998999 75
No 169
>KOG2467|consensus
Probab=90.63 E-value=0.46 Score=40.28 Aligned_cols=72 Identities=18% Similarity=0.149 Sum_probs=55.5
Q ss_pred CcccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484 3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r 75 (98)
||++..---=+..++++||++-|..|=+|=+-.+.|+....--.-.|-||=+|..-||.|.=| --+.+|.+|
T Consensus 195 aG~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~DiVTTTTHKsLRGP-Rg~mIFyRk 266 (477)
T KOG2467|consen 195 AGTSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYCDIVTTTTHKSLRGP-RGAMIFYRK 266 (477)
T ss_pred eccccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccccceeeccccccccCC-cceeEEEec
Confidence 455555555578899999999999999999766666655554567999999999999999999 444444444
No 170
>PRK07550 hypothetical protein; Provisional
Probab=90.47 E-value=0.76 Score=35.95 Aligned_cols=56 Identities=9% Similarity=-0.056 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCCccCc-cc-cccCccccCCCCCCCe
Q psy2484 13 NVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPLQPGH-SV-SLPLGTWLNLPLSLPS 70 (98)
Q Consensus 13 ~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi~~AD-S~-t~d~HKwL~vP~~~~~ 70 (98)
.+++|.++|++||+|+.+|.+++.. ...... ....+.-+ .+ .....|.+++| +.-.
T Consensus 184 ~~~~i~~~~~~~~~~iI~Dd~y~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~-G~Ri 245 (386)
T PRK07550 184 LLHELYDLARRHGIALILDETYRDF-DSGGGAPHDLFADPDWDDTLVHLYSFSKSYALT-GHRV 245 (386)
T ss_pred HHHHHHHHHHHcCeEEEEeccchhh-ccCCCCCcchhhCCCccccEEEEecchhhccCc-ccce
Confidence 4889999999999999999986532 111111 11111111 22 46888999999 7533
No 171
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=90.37 E-value=0.54 Score=37.75 Aligned_cols=68 Identities=10% Similarity=-0.005 Sum_probs=47.4
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCC-CCeeEEecCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLS-LPSPARTQRV 77 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~-~~~~ll~r~~ 77 (98)
..+|.+=|+++|.++|+++|+++=||.++.......+.. . .+|=+...++||++-+-+ ...+++.+++
T Consensus 147 NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl~-~---gaDivv~S~sK~l~G~~~~~~G~i~~~~~ 215 (382)
T TIGR02080 147 NPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPLA-L---GADLVLHSCTKYLNGHSDVIAGAVIAKDP 215 (382)
T ss_pred CCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCchh-h---CCCEEEeecceeccCCCCceeEEEEeCCH
Confidence 456888899999999999999999999875433221111 1 367888899999986524 2344455554
No 172
>PRK07505 hypothetical protein; Provisional
Probab=90.33 E-value=0.34 Score=38.41 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=26.6
Q ss_pred ccccccCCChHHHHHHHHHcCceEEeeccc
Q psy2484 5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHN 34 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~ 34 (98)
...+|.+-|+++|.++|++||++|.+|-+.
T Consensus 189 ~~~~G~~~~~~~i~~l~~~~~~~li~DEa~ 218 (402)
T PRK07505 189 VYSMGGIAPVKELLRLQEKYGLFLYIDDAH 218 (402)
T ss_pred ccccCCcCCHHHHHHHHHHcCCEEEEECcc
Confidence 345688889999999999999999999974
No 173
>PRK07568 aspartate aminotransferase; Provisional
Probab=89.87 E-value=0.58 Score=36.50 Aligned_cols=62 Identities=16% Similarity=0.055 Sum_probs=37.5
Q ss_pred ccccCC---ChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCC-ccCc-cc-cccCccccCCCCCCC
Q psy2484 7 LNGHVD---NVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPL-QPGH-SV-SLPLGTWLNLPLSLP 69 (98)
Q Consensus 7 ~~Ga~D---~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi-~~AD-S~-t~d~HKwL~vP~~~~ 69 (98)
.+|.+= ++++|.++|+++|+|+.+|.++.....-.+. ....+ +..| .+ .-.+.|.+++| +.-
T Consensus 174 PtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~-G~R 243 (397)
T PRK07568 174 PTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSAC-GAR 243 (397)
T ss_pred CCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCC-Ccc
Confidence 356543 5889999999999999999986543211111 11111 1122 22 23678999988 753
No 174
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=89.54 E-value=0.4 Score=39.68 Aligned_cols=61 Identities=13% Similarity=0.023 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHcCceEEeecccchhhh-----cCCC-C-CCCC-ccCccccccCccccCCCCCCCeeEEec
Q psy2484 13 NVSLLQEICAKYNLWLHLRGHNLSSLA-----LNSH-S-PSPL-QPGHSVSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 13 ~l~~i~~ic~~~~lWlHVDga~~~al~-----~~~~-~-~~gi-~~ADS~t~d~HKwL~vP~~~~~~ll~r 75 (98)
+++++++++++||+.+-+|...|.-.= ++.+ . .+-+ .-||=+++...|.||=| +.+ +++=|
T Consensus 158 ~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGP-QaG-iI~Gk 226 (367)
T PF03841_consen 158 SLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGP-QAG-IIVGK 226 (367)
T ss_dssp ---HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS--S-E-EEEEE
T ss_pred cHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCC-CeE-EEEeC
Confidence 789999999999999999997655432 2222 2 2233 44999999999999999 654 44533
No 175
>PRK08363 alanine aminotransferase; Validated
Probab=89.52 E-value=0.63 Score=36.64 Aligned_cols=65 Identities=11% Similarity=-0.018 Sum_probs=40.5
Q ss_pred ccccCC---ChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCccCc-cc-cccCccccCCCCCCCeeEE
Q psy2484 7 LNGHVD---NVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQPGH-SV-SLPLGTWLNLPLSLPSPAR 73 (98)
Q Consensus 7 ~~Ga~D---~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~~AD-S~-t~d~HKwL~vP~~~~~~ll 73 (98)
.+|.+= .+++|.++|+++|+|+-+|.++... ...+. ....+...+ -+ .-.+.|++++| +.-.-++
T Consensus 178 PtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~-~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~-GlRiG~~ 249 (398)
T PRK08363 178 PTGALYEKKTLKEILDIAGEHDLPVISDEIYDLM-TYEGKHVSPGSLTKDVPVIVMNGLSKVYFAT-GWRLGYI 249 (398)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhh-ccCCcccCHHHcCcCCcEEEEecchhccCCc-cceEEEE
Confidence 356553 4899999999999999999986532 22221 111122222 23 24789999999 8644333
No 176
>PRK07682 hypothetical protein; Validated
Probab=89.40 E-value=0.43 Score=37.16 Aligned_cols=55 Identities=7% Similarity=-0.048 Sum_probs=34.6
Q ss_pred CChHHHHHHHHHcCceEEeecccchhhhcCCC----CCCCCccCccccccCccccCCCCC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH----SPSPLQPGHSVSLPLGTWLNLPLS 67 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~----~~~gi~~ADS~t~d~HKwL~vP~~ 67 (98)
+.+++|.++|++|++|+.+|-++.....-++. .+.+...-.=+.-...|.+++| +
T Consensus 174 ~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-G 232 (378)
T PRK07682 174 SELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMT-G 232 (378)
T ss_pred HHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccCh-h
Confidence 46999999999999999999975532211111 1112111112344567999998 7
No 177
>PRK08912 hypothetical protein; Provisional
Probab=89.21 E-value=0.96 Score=35.42 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=39.0
Q ss_pred ccccCC---ChHHHHHHHHHcCceEEeecccchhhhcCCC---C---CCCCccCccccccCccccCCCCCC
Q psy2484 7 LNGHVD---NVSLLQEICAKYNLWLHLRGHNLSSLALNSH---S---PSPLQPGHSVSLPLGTWLNLPLSL 68 (98)
Q Consensus 7 ~~Ga~D---~l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~---~~gi~~ADS~t~d~HKwL~vP~~~ 68 (98)
.||.+= .+++|.++|++||+|+.+|.++..... .+. . ..+...-+=+...+.|.+++| +.
T Consensus 171 PtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~-Gl 239 (387)
T PRK08912 171 PAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVF-DGRRHIPLMTLPGMRERTVKIGSAGKIFSLT-GW 239 (387)
T ss_pred CcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhccc-CCCCCcChhhCCCccCceEEEeechhhccCc-Cc
Confidence 355543 478899999999999999998653221 211 1 222222234567789999999 74
No 178
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=89.11 E-value=0.62 Score=38.51 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=43.9
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCCc--cCccccccCccccCCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPLQ--PGHSVSLPLGTWLNLP 65 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi~--~ADS~t~d~HKwL~vP 65 (98)
+-|.+=||.+|.++++|||.||=||=+-+....=+.-+ ..|++ .-|-++-.+.|-||.-
T Consensus 183 MdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~ 247 (388)
T COG0156 183 MDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSS 247 (388)
T ss_pred CCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhccc
Confidence 45778899999999999999999998644333333322 23665 3389999999999954
No 179
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=89.01 E-value=0.79 Score=35.48 Aligned_cols=61 Identities=8% Similarity=0.067 Sum_probs=39.4
Q ss_pred cccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCccCccccc-cCccccCCCCCC
Q psy2484 6 SLNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQPGHSVSL-PLGTWLNLPLSL 68 (98)
Q Consensus 6 t~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~~ADS~t~-d~HKwL~vP~~~ 68 (98)
-.+|.+=+ +++|.++|++||+++=+|-+++.... .+. .....+...-+.+ .+.|.++.| +.
T Consensus 147 NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~i~~~s~SK~~g~~-Gl 213 (350)
T TIGR03537 147 NPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYF-GEPPHSALEVGIENVLAFHSLSKRSGMT-GY 213 (350)
T ss_pred CCcCcccCHHHHHHHHHHHHHcCcEEEEecccccccc-CCCCCchhhcCcCCEEEEeecccccCCc-cc
Confidence 34666556 89999999999999999998653321 211 1111111123554 789999999 74
No 180
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=88.93 E-value=0.58 Score=40.12 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=42.6
Q ss_pred CChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP 65 (98)
.+|.+|++|-.++|--+=.||++..|++--.+ .|-=-+|=+-+|+||.|-+|
T Consensus 221 ~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~r--PGd~G~DV~HlNLHKTF~iP 272 (496)
T COG1003 221 EDIREICEIVHEAGGQVYYDGANLNAIVGLAR--PGDMGFDVVHLNLHKTFCIP 272 (496)
T ss_pred hhHHHHHHHHHHcCCEEEecCcchhhhhcccc--ccccccceEEeecccccccC
Confidence 46889999999999999999998877764333 35555899999999999985
No 181
>PRK07908 hypothetical protein; Provisional
Probab=88.78 E-value=1.2 Score=34.46 Aligned_cols=61 Identities=11% Similarity=-0.003 Sum_probs=41.9
Q ss_pred ccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC-CCCCCccCccccc-cCccccCCCCCC
Q psy2484 5 SSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-SPSPLQPGHSVSL-PLGTWLNLPLSL 68 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~~~gi~~ADS~t~-d~HKwL~vP~~~ 68 (98)
...||.+=+.++|.++|++ +.|+-+|.++.-.. ..+. .+...+.-+.+.+ .++|.+++| +.
T Consensus 149 ~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~~-~~~~~~l~~~~~~~~i~i~S~SK~~~l~-Gl 211 (349)
T PRK07908 149 TNPTSVLHPAEQLLALRRP-GRILVVDEAFADAV-PGEPESLAGDDLPGVLVLRSLTKTWSLA-GL 211 (349)
T ss_pred CCCCCCCcCHHHHHHHHhc-CCEEEEECcchhhc-cCCccccccccCCCEEEEeecccccCCc-cc
Confidence 3457888889999999975 88999999764321 1111 2222334467777 899999988 76
No 182
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=88.77 E-value=0.59 Score=36.89 Aligned_cols=67 Identities=9% Similarity=-0.007 Sum_probs=40.3
Q ss_pred ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCcc-Cc--cccccCccccCCCCCCCeeEEe
Q psy2484 7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQP-GH--SVSLPLGTWLNLPLSLPSPART 74 (98)
Q Consensus 7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~-AD--S~t~d~HKwL~vP~~~~~~ll~ 74 (98)
.+|.. +++++|.++|++||+|+.+|.++.-...-.+....-.+. .| -+.-...|-+++| +.-.-.++
T Consensus 178 PtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~-GlRvG~~v 250 (391)
T PRK07309 178 PTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMT-GWRIGLIF 250 (391)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCc-cceeEEEE
Confidence 45553 569999999999999999999865322111111111111 12 2344788999999 86444444
No 183
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=88.70 E-value=1 Score=35.34 Aligned_cols=71 Identities=10% Similarity=0.027 Sum_probs=40.5
Q ss_pred ccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecCCC
Q psy2484 5 SSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVP 78 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~~ 78 (98)
+...|..-++.+|.++|+++|+++=-|++ ..++. ...........+=.+.+.+.|.+.. +-+.+++.++++
T Consensus 120 ~h~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~-~~g~~~G~~gd~~~fSf~~~K~i~~--geGG~v~~~~~~ 191 (363)
T PF01041_consen 120 VHLFGNPADMDAIRAIARKHGIPLIEDAAQAFGAR-YKGRPVGSFGDIAIFSFHPTKIITT--GEGGAVVTNDPE 191 (363)
T ss_dssp E-GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-E-ETTEETTSSSSEEEEESSTTSSS-S--SS-EEEEESTHH
T ss_pred ecCCCCcccHHHHHHHHHHcCCcEEEccccccCce-eCCEeccCCCCceEecCCCCCCCcC--CCCeeEEecHHH
Confidence 34578888999999999999999999996 33322 2222233333344455555688844 467788887743
No 184
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=88.37 E-value=0.42 Score=37.97 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=22.2
Q ss_pred cCCChHHHHHHHHHcCceEEeecccc
Q psy2484 10 HVDNVSLLQEICAKYNLWLHLRGHNL 35 (98)
Q Consensus 10 a~D~l~~i~~ic~~~~lWlHVDga~~ 35 (98)
..+.+++|+++|++||+|+-+|-...
T Consensus 203 ~~~~l~~l~~l~~~~g~~lI~DEv~~ 228 (403)
T PRK05093 203 TPEFLQGLRELCDQHNALLIFDEVQT 228 (403)
T ss_pred CHHHHHHHHHHHHHcCCEEEEechhh
Confidence 34569999999999999999999643
No 185
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=88.23 E-value=0.7 Score=38.09 Aligned_cols=70 Identities=9% Similarity=0.002 Sum_probs=52.8
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecCCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVP 78 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~~~ 78 (98)
..|..=++++|.+||++||+|+=-|++=+.+......+.-.+..+=++.+.+.|-+..- -+.+++.++.+
T Consensus 131 l~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittg--EGGav~tnd~e 200 (374)
T COG0399 131 LAGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTG--EGGAVVTNDEE 200 (374)
T ss_pred hccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCcccccccceEEEEecCCCCcccc--CceEEEeCCHH
Confidence 35677799999999999999999999633332334445666777888999999988776 56777777643
No 186
>PRK07324 transaminase; Validated
Probab=87.96 E-value=0.61 Score=36.71 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=36.5
Q ss_pred ccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCc-ccc-ccCccccCCCCCC
Q psy2484 7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGH-SVS-LPLGTWLNLPLSL 68 (98)
Q Consensus 7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~AD-S~t-~d~HKwL~vP~~~ 68 (98)
.||.+=+ +++|.++|++||+|+.+|.++.. +..........+..+ .|. -.+.|.+++| +.
T Consensus 165 PtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~-l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~-G~ 229 (373)
T PRK07324 165 PTGALMDRAYLEEIVEIARSVDAYVLSDEVYRP-LDEDGSTPSIADLYEKGISTNSMSKTYSLP-GI 229 (373)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEccccc-cccCCCCCChhhccCCEEEEecchhhcCCc-cc
Confidence 4565555 89999999999999999997532 111111001111111 122 3677999998 75
No 187
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=87.62 E-value=0.61 Score=36.91 Aligned_cols=53 Identities=21% Similarity=0.146 Sum_probs=34.2
Q ss_pred ccCCC----hHHHHHHHHHcCceEEeeccc-chhhhcCCC---CCCCCccCccccccCccccCCC
Q psy2484 9 GHVDN----VSLLQEICAKYNLWLHLRGHN-LSSLALNSH---SPSPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 9 Ga~D~----l~~i~~ic~~~~lWlHVDga~-~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP 65 (98)
|.+=| |++|+++|++||+|+-+|-.. |... .-+. ...++ ..|-+++ .|-|+..
T Consensus 200 G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~-~G~~~~~~~~~~-~~di~~~--gK~l~~g 260 (401)
T TIGR01885 200 GVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGR-TGKLLCVDHENV-KPDIVLL--GKALSGG 260 (401)
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCc-cchhhHHhhcCC-CCCEEEe--eccccCC
Confidence 55555 999999999999999999962 2111 0000 12233 4677765 5988754
No 188
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=87.24 E-value=0.54 Score=37.47 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=33.5
Q ss_pred cCCChHHHHHHHHHcCceEEeeccc-chhhhcCCC---CCCCCccCccccccCccccC
Q psy2484 10 HVDNVSLLQEICAKYNLWLHLRGHN-LSSLALNSH---SPSPLQPGHSVSLPLGTWLN 63 (98)
Q Consensus 10 a~D~l~~i~~ic~~~~lWlHVDga~-~~al~~~~~---~~~gi~~ADS~t~d~HKwL~ 63 (98)
..+.|++|+++|++||+||-+|-.. |... ..+. ...|+ ..|.+++ .|-|+
T Consensus 198 ~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr-~G~~~a~~~~gv-~pDi~t~--~K~lg 251 (397)
T TIGR03246 198 DPAFLKGLRELCDRHNALLIFDEVQTGVGR-TGELYAYMHYGV-TPDILTS--AKALG 251 (397)
T ss_pred CHHHHHHHHHHHHHcCCEEEEechhhcCCc-cccchhhhhcCC-CCCEEEe--ehhhh
Confidence 3467999999999999999999952 2221 1111 12255 4787764 78886
No 189
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=86.92 E-value=0.46 Score=37.31 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.8
Q ss_pred CCChHHHHHHHHHcCceEEeeccc
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGHN 34 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga~ 34 (98)
-+.+++|+++|++||+||-+|-..
T Consensus 195 ~~~l~~l~~l~~~~g~~lI~DEv~ 218 (389)
T PRK01278 195 DEFLKGLRQLCDENGLLLIFDEVQ 218 (389)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccc
Confidence 468999999999999999999963
No 190
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=86.78 E-value=0.76 Score=37.23 Aligned_cols=30 Identities=13% Similarity=0.063 Sum_probs=24.7
Q ss_pred ccccCCC---hHHHHHHHHHcCceEEeecccch
Q psy2484 7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNLS 36 (98)
Q Consensus 7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~ 36 (98)
-||.+=+ +++|.++|+++|+|+.+|.++..
T Consensus 202 PtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~ 234 (430)
T PLN00145 202 PCGSVYSYEHLAKIAETARKLGILVIADEVYDH 234 (430)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEeccchh
Confidence 4666666 88889999999999999998643
No 191
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=86.64 E-value=0.62 Score=36.25 Aligned_cols=52 Identities=13% Similarity=0.101 Sum_probs=32.6
Q ss_pred cCCChHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCccccccCccccCCC
Q psy2484 10 HVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 10 a~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP 65 (98)
..+.+++|+++|++||+++-+|-...+.-...+. ...++ ..|-++ ..|.|+ +
T Consensus 186 ~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~-~~di~t--~sK~l~-~ 240 (377)
T PRK02936 186 DPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGL-DPDIVT--VAKGLG-N 240 (377)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCC-CCcEEE--Eccccc-C
Confidence 3455999999999999999999963211010000 01233 246444 699998 5
No 192
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=85.96 E-value=0.88 Score=35.78 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=34.6
Q ss_pred cccCCC----hHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCccccccCccccCCC
Q psy2484 8 NGHVDN----VSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP 65 (98)
+|.+-| |++|+++|++||+||=+|....+....... ...|+ .+|=+++ .|||+--
T Consensus 200 ~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~-~~D~~~~--~K~l~gg 261 (401)
T PRK00854 200 AGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGI-EADVTLI--GKALSGG 261 (401)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCC-CCCEEEe--cccccCC
Confidence 455554 999999999999999999964321111110 11233 3565555 5999854
No 193
>PLN00175 aminotransferase family protein; Provisional
Probab=85.37 E-value=0.72 Score=37.03 Aligned_cols=60 Identities=15% Similarity=0.224 Sum_probs=37.3
Q ss_pred cccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC-C---CCCCccCccc-cccCccccCCCCCCC
Q psy2484 8 NGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-S---PSPLQPGHSV-SLPLGTWLNLPLSLP 69 (98)
Q Consensus 8 ~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~---~~gi~~ADS~-t~d~HKwL~vP~~~~ 69 (98)
+|.+ +.+++|.++|++|++|+.+|.++.....-.+. . +.+.. -..| ...+.|.+++| +.-
T Consensus 200 tG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~-~~vi~i~SfSK~~~~~-G~R 267 (413)
T PLN00175 200 TGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMY-ERTVTMNSLGKTFSLT-GWK 267 (413)
T ss_pred CCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCc-CcEEEEecchhhccCc-chh
Confidence 4554 56888999999999999999986433221111 1 22211 1122 24678999998 753
No 194
>PLN02624 ornithine-delta-aminotransferase
Probab=84.88 E-value=0.97 Score=37.40 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=32.5
Q ss_pred hHHHHHHHHHcCceEEeeccc-chhhh---cCCCCCCCCccCccccccCccccCCC
Q psy2484 14 VSLLQEICAKYNLWLHLRGHN-LSSLA---LNSHSPSPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga~-~~al~---~~~~~~~gi~~ADS~t~d~HKwL~vP 65 (98)
|++|+++|++||++|.+|-.. |.... +.. ...++ ..|-+++ .|-|+..
T Consensus 247 L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~-~~~~i-~pDiv~l--sK~lggG 298 (474)
T PLN02624 247 LKAVRELCSKHNVLMIADEIQTGLARTGKMLAC-DWEEV-RPDVVIL--GKALGGG 298 (474)
T ss_pred HHHHHHHHHHcCCEEEEeccccCcCcCcchhhH-HhcCC-CCCEEEe--cccccCC
Confidence 999999999999999999953 22110 100 12344 4676665 7998876
No 195
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=84.35 E-value=0.81 Score=36.07 Aligned_cols=60 Identities=10% Similarity=0.009 Sum_probs=37.6
Q ss_pred ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccC-cc-ccccCccccCCCCCC
Q psy2484 7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPG-HS-VSLPLGTWLNLPLSL 68 (98)
Q Consensus 7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~A-DS-~t~d~HKwL~vP~~~ 68 (98)
-||.+ +.+++|.++|+++|+|+.+|.++.-... .+. .+..+..- .- +.-.+.|-+++| +.
T Consensus 180 PtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~-Gl 247 (401)
T TIGR01264 180 PCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVF-SGATFEPLASLSSTVPILSCGGLAKRWLVP-GW 247 (401)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhcc-CCcccccHHHcCCCCcEEEEccCcccCCCc-cc
Confidence 35555 5689999999999999999998653321 211 11112111 12 245678988999 75
No 196
>PRK12414 putative aminotransferase; Provisional
Probab=84.32 E-value=0.74 Score=36.25 Aligned_cols=62 Identities=8% Similarity=0.052 Sum_probs=38.0
Q ss_pred ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCc-cCc-c-ccccCccccCCCCCCC
Q psy2484 7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQ-PGH-S-VSLPLGTWLNLPLSLP 69 (98)
Q Consensus 7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~-~AD-S-~t~d~HKwL~vP~~~~ 69 (98)
.||.+ +++++|.++|++||+|+=+|.++.-...-.+. .+.... ..| . +.-.+.|-+++| +.=
T Consensus 174 PTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~p-GlR 243 (384)
T PRK12414 174 PSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVT-GWR 243 (384)
T ss_pred CCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCc-cce
Confidence 45664 78999999999999999999986532211111 111111 011 1 233478999999 753
No 197
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=84.20 E-value=0.96 Score=35.17 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=38.4
Q ss_pred ccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCC----CCCCCccCccccccCccccCCCCCC
Q psy2484 7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSH----SPSPLQPGHSVSLPLGTWLNLPLSL 68 (98)
Q Consensus 7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~----~~~gi~~ADS~t~d~HKwL~vP~~~ 68 (98)
.||.+=+ +++|+++|+++++|+=+|.++.... .... .+...+ -.=+.-.++|++++| +.
T Consensus 154 PTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~-~~i~~~S~SK~~~~~-G~ 219 (356)
T PRK08056 154 PTGLLPERQLLQAIAERCKSLNIALILDEAFIDFI-PDETGFIPQLADNP-HLWVLRSLTKFYAIP-GL 219 (356)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccC-CcchHHHHHhccCC-CEEEEEechhhccCc-ch
Confidence 3566656 8889999999999999999753221 1110 111111 223457899999998 75
No 198
>PRK07337 aminotransferase; Validated
Probab=84.18 E-value=1.6 Score=34.11 Aligned_cols=60 Identities=10% Similarity=0.100 Sum_probs=37.5
Q ss_pred ccccCC---ChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccC-cccc-ccCccccCCCCCC
Q psy2484 7 LNGHVD---NVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPG-HSVS-LPLGTWLNLPLSL 68 (98)
Q Consensus 7 ~~Ga~D---~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~A-DS~t-~d~HKwL~vP~~~ 68 (98)
.+|.+= .+++|.++|+++++|+-+|-++.... ..+....-.+.. +-++ -.+.|.+++| +.
T Consensus 175 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~vi~~~S~SK~~~~~-G~ 239 (388)
T PRK07337 175 PTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLS-YDAAPVSALSLGDDVITINSFSKYFNMT-GW 239 (388)
T ss_pred CCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccc-cCCCCcChhhccCCEEEEEechhhcCCc-hh
Confidence 466644 47888899999999999998764322 121111111122 3343 3889999999 74
No 199
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=83.92 E-value=1.2 Score=35.31 Aligned_cols=48 Identities=13% Similarity=0.064 Sum_probs=31.6
Q ss_pred hHHHHHHHHHcCceEEeecccc-hhh---hcCCCCCCCCccCccccccCccccCCC
Q psy2484 14 VSLLQEICAKYNLWLHLRGHNL-SSL---ALNSHSPSPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga~~-~al---~~~~~~~~gi~~ADS~t~d~HKwL~vP 65 (98)
+++|+++|++||+||-+|-+.. ... ... ....++ ..|-++ ..|.++.+
T Consensus 209 l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~-~~~~~~-~pdi~~--~sK~lg~g 260 (396)
T PRK04073 209 LKAARELCKEENVLFIADEIQTGLGRTGKLFA-CDWDNV-TPDMYI--LGKALGGG 260 (396)
T ss_pred HHHHHHHHHHcCCEEEEecchhCCCcCcHHHH-hhhcCC-CCCEEE--ecccccCC
Confidence 8999999999999999999632 211 000 011233 356555 47999887
No 200
>PRK05957 aspartate aminotransferase; Provisional
Probab=83.60 E-value=2.3 Score=33.52 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=25.3
Q ss_pred cccccCCC---hHHHHHHHHHcCceEEeecccc
Q psy2484 6 SLNGHVDN---VSLLQEICAKYNLWLHLRGHNL 35 (98)
Q Consensus 6 t~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~ 35 (98)
..||.+=| +++|.++|++||+++=+|.++.
T Consensus 171 NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~ 203 (389)
T PRK05957 171 NPTGVVYPEALLRAVNQICAEHGIYHISDEAYE 203 (389)
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCcEEEEeccch
Confidence 35777665 8899999999999999999865
No 201
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=83.57 E-value=1.6 Score=36.72 Aligned_cols=61 Identities=11% Similarity=0.128 Sum_probs=40.4
Q ss_pred ccCCC----hHHHHHHHHHcCceEEeecc-cchhhhcCCC--CCCCCccCccccccCccccC---CCCCCCeeEEe
Q psy2484 9 GHVDN----VSLLQEICAKYNLWLHLRGH-NLSSLALNSH--SPSPLQPGHSVSLPLGTWLN---LPLSLPSPART 74 (98)
Q Consensus 9 Ga~D~----l~~i~~ic~~~~lWlHVDga-~~~al~~~~~--~~~gi~~ADS~t~d~HKwL~---vP~~~~~~ll~ 74 (98)
|.+-| +++|+++|++||+.|-+|=. .|..+.-.-. ...|++ +|= +-..|-|+ +| .++++..
T Consensus 274 G~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~-PDi--vtlgK~lggG~~P--igAv~~~ 344 (504)
T PLN02760 274 GVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIK-PDL--VSLAKALSSAYMP--IGAVLVS 344 (504)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCC-CcE--EEecccccCCccc--cceEeec
Confidence 55667 99999999999999999984 3443322211 234664 884 44589996 47 3444444
No 202
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=83.53 E-value=2.6 Score=32.82 Aligned_cols=60 Identities=15% Similarity=0.066 Sum_probs=36.5
Q ss_pred ccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccC-c--cccccCccccCCCCCC
Q psy2484 7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPG-H--SVSLPLGTWLNLPLSL 68 (98)
Q Consensus 7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~A-D--S~t~d~HKwL~vP~~~ 68 (98)
-+|..=+ +.+|.++|++||+|+-+|-++.-... .+. .+..+... + =..-.+.|.+++| +.
T Consensus 176 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~-~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~-Gl 244 (383)
T TIGR03540 176 PTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITF-DGYKAPSFLEVDGAKDVGIEFHSLSKTYNMT-GW 244 (383)
T ss_pred CcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhcc-CCCCCcCcccCCCcccCEEEEEecccccCCc-cc
Confidence 3555545 78999999999999999998653221 211 11111111 1 1234566999999 74
No 203
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=83.44 E-value=1.9 Score=38.39 Aligned_cols=67 Identities=12% Similarity=0.036 Sum_probs=48.9
Q ss_pred cccccCCChHHHHHHHHHcCceE-EeecccchhhhcCC-CC----CCCCccCccc---cccCccccCCCCCCCeeEEecC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWL-HLRGHNLSSLALNS-HS----PSPLQPGHSV---SLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWl-HVDga~~~al~~~~-~~----~~gi~~ADS~---t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
|.-|.+=++++|+++| |+-+ |||-|.|+-..+.+ .+ +.+...||-. |-..||.|..- .-++.+-.|.
T Consensus 307 TYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~al-TQaS~iHvk~ 382 (713)
T PRK15399 307 TYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAF-SQASLIHIKG 382 (713)
T ss_pred CCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhcccccc-chheeeeecC
Confidence 6678889999999999 5666 99998776654444 32 2333468988 99999999987 5566665554
No 204
>PRK09148 aminotransferase; Validated
Probab=83.08 E-value=1.6 Score=34.76 Aligned_cols=66 Identities=5% Similarity=-0.075 Sum_probs=38.9
Q ss_pred cccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccC-cc--ccccCccccCCCCCCCeeEEec
Q psy2484 8 NGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPG-HS--VSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 8 ~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~A-DS--~t~d~HKwL~vP~~~~~~ll~r 75 (98)
||.+=+ +++|.++|++||+|+-+|.+++-... .+. .+..+... |- +.-.+.|.+++| +.=.-++.-
T Consensus 178 tG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~-~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~p-GlR~G~~v~ 252 (405)
T PRK09148 178 TAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYF-DGNPPPSVLQVPGAKDVTVEFTSMSKTFSMA-GWRMGFAVG 252 (405)
T ss_pred CCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhc-CCCCCCChhhCCCccCcEEEEeccccccCCc-chheeeeeC
Confidence 444444 57888999999999999998654321 111 11112111 21 245678999999 753333333
No 205
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=82.90 E-value=0.91 Score=35.32 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.6
Q ss_pred CCChHHHHHHHHHcCceEEeecccc
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGHNL 35 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga~~ 35 (98)
.+.+++|+++|++||+||.+|-...
T Consensus 202 ~~~l~~l~~l~~~~~~~lI~DE~~~ 226 (396)
T PRK02627 202 KEYLQALRELCDENGILLILDEVQT 226 (396)
T ss_pred HHHHHHHHHHHHHcCCEEEEechhc
Confidence 3459999999999999999999643
No 206
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=82.15 E-value=1 Score=35.89 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=35.7
Q ss_pred CCChHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCc-cCccc-cccCccccCCCCCC
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQ-PGHSV-SLPLGTWLNLPLSL 68 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~-~ADS~-t~d~HKwL~vP~~~ 68 (98)
.+.+++|.++|++||+|+.+|.++.... .... .+..+. ..+.+ .-.+-|.+++| +.
T Consensus 196 ~~~~~~l~~~a~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~p-Gl 256 (412)
T PTZ00433 196 RKHVEDIIRLCEELRLPLISDEIYAGMV-FNGATFTSVADFDTTVPRVILGGTAKNLVVP-GW 256 (412)
T ss_pred HHHHHHHHHHHHHcCCeEEEeccccccc-cCCCCccchhhccCCCceEEEccchhhcCCC-Ce
Confidence 4568899999999999999999865322 1211 111111 11233 34678999999 76
No 207
>PRK07683 aminotransferase A; Validated
Probab=81.55 E-value=1.3 Score=34.88 Aligned_cols=66 Identities=8% Similarity=0.029 Sum_probs=39.2
Q ss_pred ccccC---CChHHHHHHHHHcCceEEeecccchhhhcCCC-CCCCC-ccC-ccc-cccCccccCCCCCCCeeEE
Q psy2484 7 LNGHV---DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-SPSPL-QPG-HSV-SLPLGTWLNLPLSLPSPAR 73 (98)
Q Consensus 7 ~~Ga~---D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~~~gi-~~A-DS~-t~d~HKwL~vP~~~~~~ll 73 (98)
-||.+ +.+++|.++|+++|+|+.+|.++.-...-++. .+... +.. ..+ .-.+-|.+++| +.=.-.+
T Consensus 173 PtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~p-GlRiG~i 245 (387)
T PRK07683 173 PTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMT-GWRIGFL 245 (387)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCc-cceeEEE
Confidence 35554 56899999999999999999976532211111 11111 001 112 34577999999 7533333
No 208
>PRK13578 ornithine decarboxylase; Provisional
Probab=81.21 E-value=0.97 Score=40.28 Aligned_cols=69 Identities=7% Similarity=-0.044 Sum_probs=50.3
Q ss_pred cccccCCChHHHHHH-HHHcCceEEeecccchhhhcCCC-C----CCCCccCc----cccccCccccCCCCCCCeeEEec
Q psy2484 6 SLNGHVDNVSLLQEI-CAKYNLWLHLRGHNLSSLALNSH-S----PSPLQPGH----SVSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 6 t~~Ga~D~l~~i~~i-c~~~~lWlHVDga~~~al~~~~~-~----~~gi~~AD----S~t~d~HKwL~vP~~~~~~ll~r 75 (98)
|.-|.+=++++|+++ |++++ -||||-|.|+-+.+.+. + ...-..|| =+|=..||.|..= ..++.+-.|
T Consensus 292 TYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~al-TQaS~LHvk 369 (720)
T PRK13578 292 TYDGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGF-SQTSQIHKK 369 (720)
T ss_pred CCcceeecHHHHHHHhhccCC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchhh-hhHhhhhcC
Confidence 667888999999998 68888 99999887766655442 1 22234577 7788899999886 555666555
Q ss_pred C
Q psy2484 76 R 76 (98)
Q Consensus 76 ~ 76 (98)
+
T Consensus 370 ~ 370 (720)
T PRK13578 370 D 370 (720)
T ss_pred C
Confidence 4
No 209
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=80.47 E-value=1.7 Score=38.71 Aligned_cols=68 Identities=9% Similarity=0.056 Sum_probs=47.4
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCC-C-CCCC-ccC---c--cccccCccccCCCCCCCeeEEecC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-S-PSPL-QPG---H--SVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~-~~gi-~~A---D--S~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
|.-|.+=++++|.++|++++ +|||-|.|+-+.+.+. + ..++ ..| | =+|=..||.|..- ..++.+-.|.
T Consensus 307 TYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~al-TQaS~LHvkg 382 (714)
T PRK15400 307 TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAF-SQASMIHVKG 382 (714)
T ss_pred CCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCcChhhcCCCCCCceEEEEchhhcccch-hHHhHHHHcC
Confidence 66788999999999999998 7999887666544443 2 2333 224 3 5677899999886 4555554443
No 210
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=80.31 E-value=1.3 Score=34.45 Aligned_cols=55 Identities=13% Similarity=0.008 Sum_probs=34.3
Q ss_pred CChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCc------cCc--cccccCccccCCCCCC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQ------PGH--SVSLPLGTWLNLPLSL 68 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~------~AD--S~t~d~HKwL~vP~~~ 68 (98)
+.+++|.++|+++|+|+-+|.++.... ..+.....+. ..+ -+...+.|-+++| +.
T Consensus 162 ~~~~~i~~~a~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~-G~ 224 (357)
T TIGR03539 162 DELRAIVAWARERGAVVASDECYLELG-WEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLA-GY 224 (357)
T ss_pred HHHHHHHHHHHHcCeEEEEecchhhhc-cCCCCccceecccCCCccccEEEEeccccccCCC-ce
Confidence 457889999999999999999864321 1111111010 112 2334788999988 75
No 211
>PRK08175 aminotransferase; Validated
Probab=80.00 E-value=2 Score=33.81 Aligned_cols=60 Identities=7% Similarity=0.060 Sum_probs=38.3
Q ss_pred ccccCCCh---HHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCc-cCcc--ccccCccccCCCCCC
Q psy2484 7 LNGHVDNV---SLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQ-PGHS--VSLPLGTWLNLPLSL 68 (98)
Q Consensus 7 ~~Ga~D~l---~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~-~ADS--~t~d~HKwL~vP~~~ 68 (98)
-+|.+=+. ++|.++|++||+|+.+|-++.... ..+. ....++ ..|. ..-.+-|.+++| +.
T Consensus 176 PtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~-~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~p-Gl 244 (395)
T PRK08175 176 PTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIV-YDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMA-GW 244 (395)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhc-cCCCCCcchhcCCCcccCEEEEeeccccccCc-ch
Confidence 45655444 799999999999999999865322 2211 111222 1343 246789999999 75
No 212
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=79.89 E-value=1.4 Score=34.57 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=31.1
Q ss_pred CChHHHHHHHHHcCceEEeecccchhhhcCCC-C--CCCCccCccccccCccccC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-S--PSPLQPGHSVSLPLGTWLN 63 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~--~~gi~~ADS~t~d~HKwL~ 63 (98)
|+|++|.++|+++|+++.+|.+..+...-.+. . ..|+ ..| .+...|-|+
T Consensus 186 ~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~-~pd--i~t~sK~l~ 237 (375)
T PRK04260 186 DFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGI-EPD--IFTLAKGLA 237 (375)
T ss_pred HHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCC-CCC--EEEeccccc
Confidence 45999999999999999999974321100001 0 2233 245 235799887
No 213
>PRK08354 putative aminotransferase; Provisional
Probab=78.72 E-value=1.5 Score=33.57 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=33.8
Q ss_pred cccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCcccc-ccCccccCCCCCC
Q psy2484 8 NGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVS-LPLGTWLNLPLSL 68 (98)
Q Consensus 8 ~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t-~d~HKwL~vP~~~ 68 (98)
||.+-+ +++|.++|+++|+|+.+|-++..... ... ..+....+. -.+-|.+++| +.
T Consensus 130 TG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~-~~~---~~~~~~vi~~~S~SK~~~l~-Gl 189 (311)
T PRK08354 130 DGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVK-KPE---SPEGENIIKLRTFTKSYGLP-GI 189 (311)
T ss_pred CCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccc-ccc---ccCCCcEEEEeccHhhcCCc-cc
Confidence 555544 66677788999999999997643221 111 111112232 3457999988 74
No 214
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=78.47 E-value=2.5 Score=33.70 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=33.5
Q ss_pred cccCCC----hHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCccccccCccccC
Q psy2484 8 NGHVDN----VSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHSVSLPLGTWLN 63 (98)
Q Consensus 8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~ 63 (98)
+|.+-| +++|+++|++||+||=+|=...+.. .... ...++ ..|=+ ...|.++
T Consensus 208 ~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r-~g~~~~~~~~~~-~pDi~--t~sK~l~ 266 (423)
T TIGR00713 208 MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFR-VALGGAQEYFGV-EPDLT--TLGKIIG 266 (423)
T ss_pred CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccc-cCcchhHHHhCC-Ccchh--hhhhhhc
Confidence 455545 8999999999999999999642222 1111 12233 24633 4789998
No 215
>PRK12403 putative aminotransferase; Provisional
Probab=78.24 E-value=2.9 Score=34.50 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=37.3
Q ss_pred hHHHHHHHHHcCceEEeecc-cchhhhcCCC--CCCCCccCccccccCccccC---CCCCCCeeEE
Q psy2484 14 VSLLQEICAKYNLWLHLRGH-NLSSLALNSH--SPSPLQPGHSVSLPLGTWLN---LPLSLPSPAR 73 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga-~~~al~~~~~--~~~gi~~ADS~t~d~HKwL~---vP~~~~~~ll 73 (98)
|++|+++|++||+.|-+|=. .|....-.-. ...|++ .|=++ ..|.|+ +| +++++.
T Consensus 245 l~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~-PDiv~--~gK~lggG~~P--iga~v~ 305 (460)
T PRK12403 245 WPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFE-PDTLS--IAKGLTSGYVP--MGGLVL 305 (460)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCC-CCeEE--Ecccccccccc--eEEEEE
Confidence 99999999999999999985 4443321110 123665 68666 689999 78 344443
No 216
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=77.88 E-value=2.4 Score=34.13 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=35.9
Q ss_pred hHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484 14 VSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r 75 (98)
+++|+++|++||++|.+|-. .|... .-+. ..-|+ ..|=+| ..|-|+--+-.++++..+
T Consensus 202 l~~l~~l~~~~~~llI~DEv~tG~GR-tG~~~a~~~~gv-~PDi~t--~gK~lg~G~p~~av~~~~ 263 (395)
T PRK03715 202 MQQLRALTKQHGLLLIVDEVQTGCGR-TGTLFAYELSGI-EPDIMT--LGKGIGGGVPLAALLAKA 263 (395)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCC-CcchhhHhhcCC-CCceee--ehhhhhCCcceEEEEEcc
Confidence 99999999999999999995 33221 1110 11255 377444 479997632245454433
No 217
>PRK08960 hypothetical protein; Provisional
Probab=77.77 E-value=4.2 Score=31.88 Aligned_cols=59 Identities=7% Similarity=0.042 Sum_probs=36.3
Q ss_pred ccccCC---ChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCccCcccc-ccCccccCCCCCC
Q psy2484 7 LNGHVD---NVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQPGHSVS-LPLGTWLNLPLSL 68 (98)
Q Consensus 7 ~~Ga~D---~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~~ADS~t-~d~HKwL~vP~~~ 68 (98)
-||..= .+.+|+++|++||+|+=+|.++... ...+. ....+. .+-++ -.++|-+++| +.
T Consensus 177 PtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~-~~~~~~~~~~~~~-~~vi~~~S~SK~~g~~-Gl 241 (387)
T PRK08960 177 PTGTLLSRDELAALSQALRARGGHLVVDEIYHGL-TYGVDAASVLEVD-DDAFVLNSFSKYFGMT-GW 241 (387)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCCCCCChhhcc-CCEEEEeecccccCCc-cc
Confidence 455543 4667788899999999999976432 22221 111221 12333 4689999999 74
No 218
>PRK05942 aspartate aminotransferase; Provisional
Probab=77.48 E-value=2.7 Score=33.07 Aligned_cols=29 Identities=10% Similarity=0.003 Sum_probs=23.7
Q ss_pred ccccCCC---hHHHHHHHHHcCceEEeecccc
Q psy2484 7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNL 35 (98)
Q Consensus 7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~ 35 (98)
-||.+=+ +++|.++|++||+|+=+|.++.
T Consensus 182 PtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~ 213 (394)
T PRK05942 182 PTTATAPREFFEEIVAFARKYEIMLVHDLCYA 213 (394)
T ss_pred CCCCcCCHHHHHHHHHHHHHcCeEEEEeccch
Confidence 3555544 8899999999999999999864
No 219
>PRK08636 aspartate aminotransferase; Provisional
Probab=77.10 E-value=5 Score=31.79 Aligned_cols=63 Identities=11% Similarity=-0.018 Sum_probs=39.6
Q ss_pred CChHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccC-cc-c-cccCccccCCCCCCCeeEEecC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPG-HS-V-SLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~A-DS-~-t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
+.+++|.++|++||+|+=+|=++.-... .+. .+..++.. |- + .-.+-|.+++| +.=.-.+.-+
T Consensus 195 ~~~~~l~~~a~~~~~~II~De~Y~~l~~-~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-GlRiG~iv~~ 263 (403)
T PRK08636 195 SFYERLVALAKKERFYIISDIAYADITF-DGYKTPSILEVEGAKDVAVESYTLSKSYNMA-GWRVGFVVGN 263 (403)
T ss_pred HHHHHHHHHHHHcCcEEEEeccchhhcc-CCCCCCChhcCCCccccEEEEEecccccCCc-cceeeeeeCC
Confidence 4578889999999999999998653321 221 12233322 22 2 23689999999 8644444443
No 220
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=77.02 E-value=1.9 Score=33.66 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=35.5
Q ss_pred cccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCcc-Ccc-c-cccCccccCCCCCC
Q psy2484 8 NGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQP-GHS-V-SLPLGTWLNLPLSL 68 (98)
Q Consensus 8 ~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~-ADS-~-t~d~HKwL~vP~~~ 68 (98)
||.+=+ +++|.++|++||+|+-+|-++.-... .+. .+..++. .+- + .-.+.|.+++| +.
T Consensus 179 tG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~-Gl 246 (385)
T PRK09276 179 TGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAY-DGYKPPSFLEVPGAKDVGIEFHSLSKTYNMT-GW 246 (385)
T ss_pred CCCCCCHHHHHHHHHHHHHCCcEEEEecchhheec-CCCCCCChhccCCCcCCEEEEecchhhcCCc-ch
Confidence 454444 68889999999999999998653221 111 1111111 111 2 34667999999 73
No 221
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=76.75 E-value=5.6 Score=31.47 Aligned_cols=56 Identities=4% Similarity=0.017 Sum_probs=35.4
Q ss_pred CChHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccC-cc-c-cccCccccCCCCCCC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPG-HS-V-SLPLGTWLNLPLSLP 69 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~A-DS-~-t~d~HKwL~vP~~~~ 69 (98)
+.+.+|.++|++||+|+=+|-++.-.. ..+. .+..+... +- | .-.+.|.+++| +.=
T Consensus 193 ~~~~~l~~~a~~~~~~iI~De~y~~~~-~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~p-GlR 254 (402)
T TIGR03542 193 EQLKELVDYANEHGSLILFDAAYSAFI-SDPSLPHSIFEIPGAKECAIEFRSFSKTAGFT-GVR 254 (402)
T ss_pred HHHHHHHHHHHHcCeEEEEEchhhhhc-cCCCCCcchhhCCCCcccEEEEecCccccCCC-Ccc
Confidence 348899999999999999999765321 1111 11222221 12 2 34678999999 763
No 222
>PRK09265 aminotransferase AlaT; Validated
Probab=76.47 E-value=2.9 Score=33.02 Aligned_cols=61 Identities=18% Similarity=0.091 Sum_probs=37.8
Q ss_pred ccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCC-ccCccccc-cCccccCCCCCC
Q psy2484 7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPL-QPGHSVSL-PLGTWLNLPLSL 68 (98)
Q Consensus 7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi-~~ADS~t~-d~HKwL~vP~~~ 68 (98)
.+|.+=+ +++|.++|+++|+|+-+|-++.-...-.+. .+..+ +....+.+ .+-|.+++| ++
T Consensus 180 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~p-Gl 247 (404)
T PRK09265 180 PTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVA-GF 247 (404)
T ss_pred CCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCc-cc
Confidence 4676555 899999999999999999976532211111 11111 11123333 357999999 86
No 223
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=75.22 E-value=3.8 Score=31.58 Aligned_cols=69 Identities=10% Similarity=-0.006 Sum_probs=40.6
Q ss_pred cccccCCChHHHHHHHHHc--CceEEeecccchhhhcCCCCCCCC---ccCc-cc-cccCccccCCCCCCCeeEEecC
Q psy2484 6 SLNGHVDNVSLLQEICAKY--NLWLHLRGHNLSSLALNSHSPSPL---QPGH-SV-SLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~--~lWlHVDga~~~al~~~~~~~~gi---~~AD-S~-t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
..+|.+=|.++|.++++.+ |+|+-+|.++..... .+....++ +..+ .+ .-.+.|.++.| +.-.-+++-+
T Consensus 165 nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~-G~RiG~l~~~ 240 (367)
T PRK02731 165 NPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVR-RKDYEDGLELVAKFPNVVVTRTFSKAYGLA-GLRVGYGIAP 240 (367)
T ss_pred CCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhcc-CcCcccHHHHHhhcCCEEEEeeehHhhcCc-ccceeeeeCC
Confidence 4578888999999999875 999999997543221 11111111 1111 12 12566999988 7643344433
No 224
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=75.22 E-value=3.4 Score=33.32 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=32.2
Q ss_pred hHHHHHHHHHcCceEEeeccc-chhhhcCCC---CCCCCccCccccccCccccCCCCCCC
Q psy2484 14 VSLLQEICAKYNLWLHLRGHN-LSSLALNSH---SPSPLQPGHSVSLPLGTWLNLPLSLP 69 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga~-~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP~~~~ 69 (98)
+++|+++|++||+||-+|=.. |... ..+. ...|+ ..|-++ ..|-|+ + +.+
T Consensus 220 l~~l~~lc~~~gillI~DEV~tg~gr-~g~~~a~~~~~~-~pDi~~--lsK~l~-~-G~p 273 (420)
T TIGR00700 220 VPALLDWCREHGIVFIADEVQTGFAR-TGAMFACEHEGP-EPDLIT--TAKSLA-D-GLP 273 (420)
T ss_pred HHHHHHHHHHcCCEEEEEecccCCcc-cchhHHHhhcCC-CCCEEE--eecccc-C-Ccc
Confidence 999999999999999999852 2211 1111 11233 467444 689888 5 443
No 225
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=75.08 E-value=4.8 Score=33.92 Aligned_cols=59 Identities=10% Similarity=0.119 Sum_probs=36.6
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLP 69 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~ 69 (98)
..|.++++++|+++++++|.-+=+ |+...++.+-+. .|-=-||=+ ++-||-|++|++-+
T Consensus 208 ~~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL~~l~~--Pge~GADI~-vg~~Q~fg~p~~~G 266 (429)
T PF02347_consen 208 TFGVFEDIKEIADIAHAAGALVIV-GADPNALGGLKS--PGEYGADIV-VGEHQTFGIPMGFG 266 (429)
T ss_dssp TTSB--THHHHHHHHHHTT-EEEE-CGGCCGCCTC----GGGGT-SEE-EECCTTTT---CCC
T ss_pred CCceEeeHHHHHHHHHHcCCEEEE-ecCHHHHhCcCC--hhhcCccEE-eeCCCCCcccCCCC
Confidence 468999999999999999988866 775555544333 133346655 88899999987654
No 226
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=74.91 E-value=5.7 Score=33.01 Aligned_cols=54 Identities=4% Similarity=0.003 Sum_probs=36.5
Q ss_pred cccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC
Q psy2484 8 NGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 8 ~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP 65 (98)
++.+=++++|+++|+++|+++=+|...+.-....+. - .-||=++-..-||++=.
T Consensus 160 ~~~v~Di~~I~~iA~~~gi~livD~T~~tP~~~~pl-~---~GADIvv~S~TKy~~Gh 213 (432)
T PRK06702 160 AMNVLNFKEFSDAAKELEVPFIVDNTLATPYLCQAF-E---HGANIIVHSTTKYIDGH 213 (432)
T ss_pred cccccCHHHHHHHHHHcCCEEEEECCCCchhhCChh-h---cCCCEEEEccccccCCC
Confidence 344446999999999999999999986433322211 1 12676666677777654
No 227
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=74.23 E-value=4.5 Score=32.08 Aligned_cols=58 Identities=2% Similarity=0.011 Sum_probs=36.6
Q ss_pred CCChHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccC-c-ccc-ccCccccCCCCCCCe
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPG-H-SVS-LPLGTWLNLPLSLPS 70 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~A-D-S~t-~d~HKwL~vP~~~~~ 70 (98)
-+.+.+|.++|++||+|+=+|-++.-.. ..+. .+..++.. + .|. -.+.|.+++| +.=.
T Consensus 195 ~~~~~~l~~~a~~~~~~iI~De~Y~~~~-~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~p-GlRi 258 (409)
T PRK07590 195 KEQLKAWVDYAKENGSLILFDAAYEAFI-SDPSLPHSIYEIEGARECAIEFRSFSKTAGFT-GTRC 258 (409)
T ss_pred HHHHHHHHHHHHHcCeEEEEEccchhhc-cCCCCCcchhhCCCcccceEEEecCccccCCc-Ccee
Confidence 3467788889999999999999765322 1111 12222222 2 232 3789999999 7633
No 228
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=73.29 E-value=0.82 Score=35.56 Aligned_cols=62 Identities=8% Similarity=-0.103 Sum_probs=40.1
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC-CCCCc-cCccccc-cCccccCCCCCCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS-PSPLQ-PGHSVSL-PLGTWLNLPLSLP 69 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~-~~gi~-~ADS~t~-d~HKwL~vP~~~~ 69 (98)
-+|.+-+.+++.+||+.+++||-+|-++.....-.... ..-.. ..+-+.+ .+.|.+++| +..
T Consensus 172 PtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~-GlR 236 (368)
T PRK03317 172 PTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFA-GGR 236 (368)
T ss_pred CCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccc-hhh
Confidence 37899999999999999999999999755321111110 11011 1233333 889999988 753
No 229
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=72.73 E-value=3.4 Score=31.50 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=36.3
Q ss_pred CChHHHHHHHHHcCceEEeecccchhhhcCCC--C-CCCCccCcc--ccccCccccCCCCCC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH--S-PSPLQPGHS--VSLPLGTWLNLPLSL 68 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~-~~gi~~ADS--~t~d~HKwL~vP~~~ 68 (98)
+.+.+|.++|++||+|+=+|-++.....-... . ...++..+. +.-.+.|-++.| +.
T Consensus 168 ~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~-Gl 228 (363)
T PF00155_consen 168 EELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLP-GL 228 (363)
T ss_dssp HHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSG-GG
T ss_pred ccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeecccccccc-cc
Confidence 55666666799999999999976443322111 1 233333433 566788999999 63
No 230
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=72.26 E-value=4 Score=33.78 Aligned_cols=59 Identities=10% Similarity=0.051 Sum_probs=36.4
Q ss_pred cccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCCC-CCCCcc-Ccc--ccc-cCccccCCCCCC
Q psy2484 8 NGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSHS-PSPLQP-GHS--VSL-PLGTWLNLPLSL 68 (98)
Q Consensus 8 ~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~~-~~gi~~-ADS--~t~-d~HKwL~vP~~~ 68 (98)
||.+=+ +.+|.++|++||+|+-+|-++.-.. ..... ..-.+. .|. +++ .+.|.+++| +.
T Consensus 294 TG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~-~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~-G~ 360 (517)
T PRK13355 294 TGALYPREVLQQIVDIAREHQLIIFSDEIYDRLV-MDGLEHTSIASLAPDLFCVTFSGLSKSHMIA-GY 360 (517)
T ss_pred CCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhc-CCCCCcccHHHhCCCCeEEEEecchhhccCc-cc
Confidence 555544 8999999999999999999865322 22110 010111 132 322 468999998 75
No 231
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=72.24 E-value=4.5 Score=32.74 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=33.1
Q ss_pred cccCCC----hHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCccccccCccccCC
Q psy2484 8 NGHVDN----VSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHSVSLPLGTWLNL 64 (98)
Q Consensus 8 ~Ga~D~----l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~v 64 (98)
.|.+=| |++|+++|++||+++-+|=...+.. .... ...++ ..|= +...|-|+-
T Consensus 210 ~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r-~g~~~~~~~~~~-~pDi--~~~gK~l~~ 269 (426)
T PRK00062 210 MGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFR-VALGGAQGYYGV-TPDL--TTLGKIIGG 269 (426)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccc-cCCccHHHHhCC-Ccch--HhhhhHhhC
Confidence 355555 9999999999999999999632222 1111 11233 2452 445788874
No 232
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=71.66 E-value=3.7 Score=32.81 Aligned_cols=50 Identities=12% Similarity=0.040 Sum_probs=32.9
Q ss_pred cCCChHHHHHHHHHcCceEEeeccc-chhhhcCCC---CCCCCccCccccccCccccC
Q psy2484 10 HVDNVSLLQEICAKYNLWLHLRGHN-LSSLALNSH---SPSPLQPGHSVSLPLGTWLN 63 (98)
Q Consensus 10 a~D~l~~i~~ic~~~~lWlHVDga~-~~al~~~~~---~~~gi~~ADS~t~d~HKwL~ 63 (98)
..+.+++|+++|++||+||=+|=.. |... ..+. ...+++ .|-+ ...|.|+
T Consensus 202 ~~~~l~~l~~l~~~~~~llI~DEv~tG~gr-~G~~~~~~~~~v~-pDi~--t~sK~l~ 255 (406)
T PRK12381 202 DKAFLQGLRELCDRHNALLIFDEVQTGVGR-TGELYAYMHYGVT-PDVL--TTAKALG 255 (406)
T ss_pred CHHHHHHHHHHHHHcCCEEEEcchhhCCCC-CcchhhhHhhCCC-CCEE--Eehhhhh
Confidence 3578999999999999999999853 2211 1111 123443 6654 5579996
No 233
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=71.65 E-value=5.5 Score=31.18 Aligned_cols=57 Identities=14% Similarity=0.064 Sum_probs=35.7
Q ss_pred CChHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCccCcc--c-cccCccccCCCCCCC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQPGHS--V-SLPLGTWLNLPLSLP 69 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~~ADS--~-t~d~HKwL~vP~~~~ 69 (98)
+.+++|.++|++||+|+=+|-++.-...-.+. .+..++.... | .-.+.|.+++| +.=
T Consensus 185 ~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~-GlR 247 (388)
T PRK07366 185 SFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMG-GFR 247 (388)
T ss_pred HHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCc-chh
Confidence 55778888999999999999876433221111 1222222222 2 34789999999 763
No 234
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=71.60 E-value=3.4 Score=32.02 Aligned_cols=63 Identities=11% Similarity=-0.005 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCc------cCc--cccccCccccCCCCCCCeeEEecC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQ------PGH--SVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~------~AD--S~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
+.+++|.++|++||+|+=+|-++... ...+.....++ ..+ =+.-.+.|-+++| +.=.-++.-+
T Consensus 168 ~~~~~i~~~a~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-GlRiG~i~~~ 238 (364)
T PRK07865 168 DHLRKVVAWARERGAVVASDECYLEL-GWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLA-GYRAGFVAGD 238 (364)
T ss_pred HHHHHHHHHHHHcCCEEEEecchhhh-ccCCCCCccccccccCCccceEEEEeechhccCCC-ceeeEEEecC
Confidence 66889999999999999999986532 22211111010 112 2244688999998 7533344333
No 235
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=71.50 E-value=3.8 Score=33.54 Aligned_cols=59 Identities=12% Similarity=0.017 Sum_probs=37.0
Q ss_pred CCChHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLNLPLSLPSPAR 73 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll 73 (98)
-+=+++|+++|++||++|-+|=. .|.... -+. ...|+ .+|-++ ..|-|+--+-+++++.
T Consensus 226 ~~yl~~lr~lc~~~g~llI~DEV~tGfGRt-G~~~a~~~~gv-~PDiv~--~gK~l~~G~Pigav~~ 288 (442)
T TIGR00709 226 SEWLQKIREVTRKHDIKLILDEVQAGFGRS-GTMFAFEHAGI-EPDFVV--MSKAVGGGLPLAVLLI 288 (442)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccccCCCCC-CchhHHHHcCC-CCcEEE--EcccccCCcccEEEEE
Confidence 34589999999999999999984 333321 111 12355 378888 5788764322444443
No 236
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=70.95 E-value=5.1 Score=32.02 Aligned_cols=61 Identities=8% Similarity=-0.032 Sum_probs=37.4
Q ss_pred cccCC---ChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCccC-cc-ccccCccccCCCCCCC
Q psy2484 8 NGHVD---NVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQPG-HS-VSLPLGTWLNLPLSLP 69 (98)
Q Consensus 8 ~Ga~D---~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~~A-DS-~t~d~HKwL~vP~~~~ 69 (98)
||.+= .+.+|.++|++||+|+-+|-++.-...-.+. .+..++.. .. +.-.+-|.+++| +.=
T Consensus 183 TG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~p-GlR 250 (409)
T PLN00143 183 CGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIP-GWG 250 (409)
T ss_pred CCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCC-ccc
Confidence 45553 4788899999999999999976532211111 11112211 12 335678999999 863
No 237
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=69.93 E-value=4.1 Score=33.29 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=39.3
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCcccc-C--CCCCCCeeEEec
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWL-N--LPLSLPSPARTQ 75 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL-~--vP~~~~~~ll~r 75 (98)
...-..+.+++|+++|++||+.|-+|=. .|.... -+. ...|+ .+|=+| ..|.| | .| .++++..+
T Consensus 216 ~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~Grt-G~~~a~~~~gv-~PDi~t--~gK~l~gG~~p--~~av~~~~ 286 (422)
T PRK05630 216 MRFHDVALIEGVRTLCDKHDILLIADEIATGFGRT-GELFATLAAGV-TPDIMC--VGKALTGGFMS--FAATLCTD 286 (422)
T ss_pred cccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcC-chhhHHHhcCC-CCCeee--eechhhcCccc--cceeeccH
Confidence 3444567899999999999999999984 333221 111 12344 367554 48998 3 46 34444433
No 238
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=69.31 E-value=4.4 Score=32.66 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=32.6
Q ss_pred cCCChHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccCCC
Q psy2484 10 HVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 10 a~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP 65 (98)
..+.+++|+++|++||+.|-+|-. .|.... -.. ...|+ ..|=++ ..|+|+-.
T Consensus 219 ~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~-G~~~a~~~~~v-~pDi~~--~~K~l~gG 274 (423)
T PRK05964 219 DPRYLAELRRICDRHGVLLIFDEIATGFGRT-GTLFACEQAGV-SPDIMC--LSKGLTGG 274 (423)
T ss_pred CHHHHHHHHHHHHHcCCEEEEechhhCCCcC-cchhHHHhcCC-CCCeee--eehhhhcC
Confidence 345599999999999999999995 222210 000 11233 355444 46999754
No 239
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=68.95 E-value=6.2 Score=30.76 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=35.8
Q ss_pred CChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCccCc-cc-cccCccccCCCCCCCeeEE
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQPGH-SV-SLPLGTWLNLPLSLPSPAR 73 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~~AD-S~-t~d~HKwL~vP~~~~~~ll 73 (98)
+.+.+|.++|++||+|+-+|-++.-...-+.. ....++.-+ -+ .-.+-|.+++| +.-.-++
T Consensus 161 ~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~-G~RiG~l 225 (354)
T PRK06358 161 EEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIP-GLRLGYG 225 (354)
T ss_pred HHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCc-chhheee
Confidence 34888899999999999999976422211111 111121111 12 24678999998 7643333
No 240
>PRK06348 aspartate aminotransferase; Provisional
Probab=68.89 E-value=3.9 Score=32.08 Aligned_cols=55 Identities=5% Similarity=0.105 Sum_probs=34.6
Q ss_pred CChHHHHHHHHHcCceEEeecccchhhhcCCC-C---CCCCccCcccc-ccCccccCCCCCC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH-S---PSPLQPGHSVS-LPLGTWLNLPLSL 68 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~---~~gi~~ADS~t-~d~HKwL~vP~~~ 68 (98)
+.+.+|.++|++|++|+-+|-++.....-.+. . +.+.. -.-+. -.+-|.+++| +.
T Consensus 182 ~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~vi~~~SfSK~~~l~-Gl 241 (384)
T PRK06348 182 ETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMP-ERTITFGSFSKDFAMT-GW 241 (384)
T ss_pred HHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCc-CcEEEEecchhccCCc-cc
Confidence 46888999999999999999976533211111 1 22211 11233 3678999998 75
No 241
>KOG1359|consensus
Probab=68.43 E-value=9.1 Score=32.01 Aligned_cols=85 Identities=18% Similarity=0.258 Sum_probs=53.3
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC-----CCCCccCccccccCccccCCCCC----CCeeEE-ecC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS-----PSPLQPGHSVSLPLGTWLNLPLS----LPSPAR-TQR 76 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~-----~~gi~~ADS~t~d~HKwL~vP~~----~~~~ll-~r~ 76 (98)
.-|-|-|+.+|..+++|||.-+-||-+-+-...=+..+ +.-..+.|=+.-.+.|-||=-.+ ++.-++ .-+
T Consensus 205 MDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~GGyttgp~~li~llr 284 (417)
T KOG1359|consen 205 MDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASGGYTTGPKPLISLLR 284 (417)
T ss_pred cCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCCCCccCChhHHHHHH
Confidence 34788999999999999999999998532222222222 34456788888889999983201 111111 001
Q ss_pred CCCcccccCCCCCCC
Q psy2484 77 VPPSGYLAQPALPPN 91 (98)
Q Consensus 77 ~~~~~~l~~~~~~~~ 91 (98)
+....++|-..|||.
T Consensus 285 qr~RpylFSnslppa 299 (417)
T KOG1359|consen 285 QRSRPYLFSNSLPPA 299 (417)
T ss_pred hcCCceeecCCCChh
Confidence 233367777888864
No 242
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=67.14 E-value=5.2 Score=32.45 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=33.5
Q ss_pred cCCChHHHHHHHHHcCceEEeecc-cchhh-----hcCCCCCCCCccCccccccCccccCC
Q psy2484 10 HVDNVSLLQEICAKYNLWLHLRGH-NLSSL-----ALNSHSPSPLQPGHSVSLPLGTWLNL 64 (98)
Q Consensus 10 a~D~l~~i~~ic~~~~lWlHVDga-~~~al-----~~~~~~~~gi~~ADS~t~d~HKwL~v 64 (98)
.-+.|++|+++|++||++|=+|-. .|... ... ..|+ ..|-+++ .|-|+-
T Consensus 217 ~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~---~~~v-~PDi~t~--~K~l~~ 271 (425)
T PRK09264 217 SAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFE---RAGI-TPDIVTL--SKSISG 271 (425)
T ss_pred CHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHh---hcCC-CCCEEEe--ccccCC
Confidence 346899999999999999999995 33321 111 1244 3676665 698865
No 243
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=66.55 E-value=6.4 Score=32.33 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=31.7
Q ss_pred hHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccC--CC
Q psy2484 14 VSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLN--LP 65 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~--vP 65 (98)
|++|+++|++||+.|-+|-. .|.... .+. ...|+ ..|-+++ .|-|+ +|
T Consensus 230 l~~l~~lc~~~g~llI~DEv~tg~Grt-G~~~a~~~~gv-~pDi~t~--gK~l~~G~p 283 (445)
T PRK08593 230 FEALYKFCREHGILFAVDDIQQGLGRT-GKWSSISHFNI-TPDLMSF--GKSLAGGMP 283 (445)
T ss_pred HHHHHHHHHHcCCEEEEechhhCCCcC-chHHHHHhcCC-CCCEeee--cccccCCcc
Confidence 99999999999999999995 233221 110 11255 3676654 78875 56
No 244
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=66.01 E-value=8 Score=29.57 Aligned_cols=69 Identities=9% Similarity=0.009 Sum_probs=42.6
Q ss_pred ccccccCCChHHHHHHHHHc-CceEEeecccchhhhcCCCCCCCCccC--ccccccCccccCCCCCCCeeEEecC
Q psy2484 5 SSLNGHVDNVSLLQEICAKY-NLWLHLRGHNLSSLALNSHSPSPLQPG--HSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~ic~~~-~lWlHVDga~~~al~~~~~~~~gi~~A--DS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
..-||.+-|.+++.+|++++ ++|+.+|-++.- +. .+.....++.. .=+...+.|.+++| +.-.-++.-+
T Consensus 154 ~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~-~~-~~~~~~~~~~~~~~i~~~S~SK~~~~~-GlR~G~~~~~ 225 (353)
T PRK05387 154 NAPTGIALPLAEIERILAANPDSVVVIDEAYVD-FG-GESAIPLIDRYPNLLVVQTFSKSRSLA-GLRVGFAIGH 225 (353)
T ss_pred CCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccc-cC-CcchHHHHhhCCCEEEEEehhHhhcch-hhhceeeecC
Confidence 45689999999999999886 999999986521 10 01100011111 23455789999999 7533334333
No 245
>PLN02955 8-amino-7-oxononanoate synthase
Probab=65.94 E-value=11 Score=32.01 Aligned_cols=59 Identities=10% Similarity=0.044 Sum_probs=41.5
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCC----CCCC-ccCccccccCccccCCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHS----PSPL-QPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~----~~gi-~~ADS~t~d~HKwL~vP 65 (98)
..|.+=|+.+|.++|++||.+|=||=+-+....=+..+ .-|+ ..-|=++-.+.|-++..
T Consensus 261 mdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~ 324 (476)
T PLN02955 261 MDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCH 324 (476)
T ss_pred CCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhcc
Confidence 45778899999999999999999998643333222221 1233 35566778899998876
No 246
>PTZ00377 alanine aminotransferase; Provisional
Probab=65.10 E-value=7.3 Score=31.93 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=23.9
Q ss_pred ccccCCC---hHHHHHHHHHcCceEEeecccc
Q psy2484 7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNL 35 (98)
Q Consensus 7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~ 35 (98)
-||.+=+ +++|+++|++||+|+=+|-.+.
T Consensus 230 PTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~ 261 (481)
T PTZ00377 230 PTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQ 261 (481)
T ss_pred CCCcCCCHHHHHHHHHHHHHCCCEEEEehhhH
Confidence 3555544 8899999999999999999765
No 247
>PRK08068 transaminase; Reviewed
Probab=64.86 E-value=4.9 Score=31.55 Aligned_cols=55 Identities=9% Similarity=-0.160 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHcCceEEeecccchhhhcCCC--C-CCCCccCcc--ccccCccccCCCCCC
Q psy2484 13 NVSLLQEICAKYNLWLHLRGHNLSSLALNSH--S-PSPLQPGHS--VSLPLGTWLNLPLSL 68 (98)
Q Consensus 13 ~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~-~~gi~~ADS--~t~d~HKwL~vP~~~ 68 (98)
.+++|.++|++||+|+=+|-+++-...-.+. . ....+.-+. +.-.+-|-+++| +.
T Consensus 188 ~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~-Gl 247 (389)
T PRK08068 188 FFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMA-GW 247 (389)
T ss_pred HHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCc-cc
Confidence 3578888999999999999986432211111 1 111111122 234778999999 75
No 248
>PRK03321 putative aminotransferase; Provisional
Probab=64.81 E-value=7.5 Score=29.84 Aligned_cols=61 Identities=11% Similarity=0.059 Sum_probs=37.4
Q ss_pred ccccCCChHHHHHHHHH--cCceEEeecccchhhhcCCCC--CCCCccC-cccc-ccCccccCCCCCC
Q psy2484 7 LNGHVDNVSLLQEICAK--YNLWLHLRGHNLSSLALNSHS--PSPLQPG-HSVS-LPLGTWLNLPLSL 68 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~--~~lWlHVDga~~~al~~~~~~--~~gi~~A-DS~t-~d~HKwL~vP~~~ 68 (98)
.+|.+=|.++|.++|++ +|+|+.+|.++.....-.+.. ....+.. +-++ -.+-|.+++| ++
T Consensus 157 PtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~-Gl 223 (352)
T PRK03321 157 PTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLA-GL 223 (352)
T ss_pred CcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhH-HH
Confidence 46888789999999987 699999999764322211110 1111111 1222 2578999988 74
No 249
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=64.60 E-value=9.2 Score=35.27 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=42.6
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCCCCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSL 68 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~ 68 (98)
.+|.+.++++|++++++.|.++=| ++...++.+.+.. |-=-||=+ +.-||-|++|++-
T Consensus 205 ~~G~ied~~~i~~~~h~~gal~~~-~ad~~al~ll~~P--ge~GaDi~-vg~~q~fg~p~g~ 262 (939)
T TIGR00461 205 TDGSILDYKQLIDALHSHKSLVSV-AADLMALTLLTPP--GHYGADIV-LGSSQRFGVPMGY 262 (939)
T ss_pred CCeEEecHHHHHHHHHHcCCEEEE-EechHHhCCcCCH--HHcCCcEE-eeCCCccCCCCCC
Confidence 479999999999999999999999 5555555555442 22235544 8999999997553
No 250
>KOG0257|consensus
Probab=64.03 E-value=6 Score=33.54 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHcCceEEeecccchh
Q psy2484 13 NVSLLQEICAKYNLWLHLRGHNLSS 37 (98)
Q Consensus 13 ~l~~i~~ic~~~~lWlHVDga~~~a 37 (98)
.|++|++||++||+|+=.|-.+-.-
T Consensus 193 eLe~ia~l~~k~~~lvisDevYe~~ 217 (420)
T KOG0257|consen 193 ELERIAELCKKHGLLVISDEVYEWL 217 (420)
T ss_pred HHHHHHHHHHHCCEEEEEhhHhHHH
Confidence 5889999999999999999865433
No 251
>PLN00144 acetylornithine transaminase
Probab=63.48 E-value=6 Score=31.62 Aligned_cols=46 Identities=11% Similarity=0.034 Sum_probs=31.6
Q ss_pred hHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccC
Q psy2484 14 VSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLN 63 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~ 63 (98)
+++|+++|++||++|=+|-. .|... ..+. ...+++ .| .....|-|+
T Consensus 190 ~~~l~~l~~~~g~llI~DEv~tg~gr-~g~~~~~~~~~~~-PD--i~t~sK~l~ 239 (382)
T PLN00144 190 LQGLRALCDEAGALLVFDEVQCGLGR-TGYLWAHEAYGVE-PD--IMTLAKPLA 239 (382)
T ss_pred HHHHHHHHHHcCCEEEEechhhCCCc-cchHhhhhhcCCC-CC--EEEeccccc
Confidence 99999999999999999995 32222 1111 134553 66 566789985
No 252
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=63.14 E-value=8.3 Score=31.65 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=32.9
Q ss_pred ccCCC----hHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccC
Q psy2484 9 GHVDN----VSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLN 63 (98)
Q Consensus 9 Ga~D~----l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~ 63 (98)
|.+=| |.+|+++|++||+.|-+|=. .|... ..+. ...|+ ..|=++ ..|-++
T Consensus 235 G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr-~G~~~a~~~~gv-~pDivt--~~K~l~ 293 (441)
T PRK05769 235 GYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGR-TGKMFAIEHFGV-EPDIIT--LAKAIA 293 (441)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCc-ccceehhhccCC-CCCEEE--Eccccc
Confidence 44446 99999999999999999985 33222 1111 11244 357555 568887
No 253
>KOG2862|consensus
Probab=63.11 E-value=6.2 Score=32.95 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=42.1
Q ss_pred CcccccccCCC-hHHHHHHHHHcCceEEeecccchhhhcCCCCC--CCCccCccccccCccccCCCCCCCe
Q psy2484 3 IGSSLNGHVDN-VSLLQEICAKYNLWLHLRGHNLSSLALNSHSP--SPLQPGHSVSLPLGTWLNLPLSLPS 70 (98)
Q Consensus 3 aGtt~~Ga~D~-l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~--~gi~~ADS~t~d~HKwL~vP~~~~~ 70 (98)
=|.+.||...| ++.+.++|++|+.-|=||+.. ++-..+.+. -|++.|=| --.|-|+.|-+++.
T Consensus 150 hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~Va--Slggt~F~mDewgVDvayt---gSQKaL~aP~GLsi 215 (385)
T KOG2862|consen 150 HGDSSTGVLQDLLAISGELCHKHEALLLVDTVA--SLGGTEFEMDEWGVDVAYT---GSQKALGAPAGLSI 215 (385)
T ss_pred ecCccccccchHHHHHHHHhhcCCeEEEEechh--hcCCccceehhhcccEEEe---cchhhcCCCCCcce
Confidence 47889999999 788889999999999999941 111122211 24433322 22688999877765
No 254
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=63.03 E-value=1.4 Score=33.95 Aligned_cols=61 Identities=11% Similarity=0.068 Sum_probs=38.2
Q ss_pred cccccCCChHHHHHHHHH--cCceEEeecccchhhhcCCC-C--CCCCccCcc-cc-ccCccccCCCCCC
Q psy2484 6 SLNGHVDNVSLLQEICAK--YNLWLHLRGHNLSSLALNSH-S--PSPLQPGHS-VS-LPLGTWLNLPLSL 68 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~--~~lWlHVDga~~~al~~~~~-~--~~gi~~ADS-~t-~d~HKwL~vP~~~ 68 (98)
-.+|.+=|.++|.+++++ +|+|+-+|-++..... .+. . ...++..+- +. -.+.|.+++| +.
T Consensus 162 NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~-Gl 229 (359)
T PRK03158 162 NPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVT-AEDYPDTLPLLEKYENLIVLRTFSKAYGLA-AL 229 (359)
T ss_pred CCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcC-CcccccHHHHHHhcCCEEEEEechHhhcCc-ch
Confidence 357888888999998887 6999999998654321 211 0 111111121 21 3667999998 75
No 255
>PTZ00376 aspartate aminotransferase; Provisional
Probab=62.81 E-value=5.5 Score=31.61 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHcCceEEeecccc
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNL 35 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~ 35 (98)
+.+++|.++|++|++|+-+|-++.
T Consensus 196 ~~~~~l~~~a~~~~~~ii~De~Y~ 219 (404)
T PTZ00376 196 EQWKEIADVMKRKNLIPFFDMAYQ 219 (404)
T ss_pred HHHHHHHHHHHhCCcEEEEehhhc
Confidence 578889999999999999999754
No 256
>PRK06207 aspartate aminotransferase; Provisional
Probab=62.60 E-value=9.7 Score=30.37 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=36.9
Q ss_pred ccccCCC---hHHHHHHHHHcCceEEeecccchhhhcCC-C-CCCCC--ccCcc-ccccCccccCCCCCC
Q psy2484 7 LNGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNS-H-SPSPL--QPGHS-VSLPLGTWLNLPLSL 68 (98)
Q Consensus 7 ~~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~-~-~~~gi--~~ADS-~t~d~HKwL~vP~~~ 68 (98)
-||.+=+ +.+|.++|++||+|+=+|-.+.-...-.. . ....+ ..-.. +...+.|-+++| +.
T Consensus 190 PTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lp-Gl 258 (405)
T PRK06207 190 PAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLS-GY 258 (405)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCc-cc
Confidence 3555544 78889999999999999997653221111 1 11111 11122 344678999999 74
No 257
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=62.59 E-value=7.3 Score=31.60 Aligned_cols=48 Identities=10% Similarity=0.073 Sum_probs=31.0
Q ss_pred CChHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLN 63 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~ 63 (98)
+-+++|+++|++||++|=+|=. .|... ..+. ...++ ..|-+ -..|-++
T Consensus 219 ~~l~~l~~lc~~~g~llI~DEv~tg~gr-~g~~~~~~~~~~-~pDiv--~~sK~l~ 270 (421)
T PRK06777 219 EFMSALRTLCDEHGILLIADEVQTGFAR-TGKLFAMEYYDV-KPDLI--TMAKSLG 270 (421)
T ss_pred HHHHHHHHHHHHcCCEEEEechhhCCcc-CCchhhhhhcCC-CCCEE--eeehhhc
Confidence 3499999999999999999995 22222 1111 11233 46644 4689987
No 258
>KOG1357|consensus
Probab=61.26 E-value=5.8 Score=34.37 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=24.8
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecc
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGH 33 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga 33 (98)
.-|.+++|.++.++++||...||+|.|
T Consensus 288 mEg~iv~Lp~vvalkkkykayl~lDEA 314 (519)
T KOG1357|consen 288 MEGTIVDLPEVVALKKKYKAYLYLDEA 314 (519)
T ss_pred ccCeecccHHHHHhhccccEEEEeecc
Confidence 347899999999999999999999995
No 259
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=61.00 E-value=7.8 Score=31.84 Aligned_cols=49 Identities=10% Similarity=0.105 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHcCceEEeecc-cchhhhcCCC--CCCCCccCccccccCccccC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGH-NLSSLALNSH--SPSPLQPGHSVSLPLGTWLN 63 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~--~~~gi~~ADS~t~d~HKwL~ 63 (98)
+.|++|+++|++||+.|=+|=. .|....-.-. ...|++ .|=+| ..|-|+
T Consensus 226 ~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~-PDi~t--~gK~l~ 277 (428)
T PRK07986 226 EWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIA-PDILC--LGKALT 277 (428)
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCC-CCEEE--echhhh
Confidence 5599999999999999999985 3332211000 123553 67554 689885
No 260
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=59.21 E-value=11 Score=30.68 Aligned_cols=59 Identities=12% Similarity=0.123 Sum_probs=37.5
Q ss_pred ccCCC----hHHHHHHHHHcCceEEeecc-cchhhhcCCC--CCCCCccCccccccCccccC--CCCCCCeeEE
Q psy2484 9 GHVDN----VSLLQEICAKYNLWLHLRGH-NLSSLALNSH--SPSPLQPGHSVSLPLGTWLN--LPLSLPSPAR 73 (98)
Q Consensus 9 Ga~D~----l~~i~~ic~~~~lWlHVDga-~~~al~~~~~--~~~gi~~ADS~t~d~HKwL~--vP~~~~~~ll 73 (98)
|.+-| |++|+++|++||+-|-+|=. .|+ ..-... ...|+ .+|=+| ..|.|+ +| .++++.
T Consensus 214 G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv-~PDivt--~gK~lggG~P--i~av~~ 281 (428)
T PRK12389 214 GIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGV-EPDLTA--LGKIIGGGLP--IGAYGG 281 (428)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCC-CCCeee--echhhcCCCc--eeEEeE
Confidence 55667 99999999999999999995 443 321110 12355 477544 478886 45 444433
No 261
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=59.15 E-value=3.9 Score=31.71 Aligned_cols=69 Identities=10% Similarity=-0.024 Sum_probs=43.6
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCc-ccc-ccCccccCCCCCCCeeEEecCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGH-SVS-LPLGTWLNLPLSLPSPARTQRV 77 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~AD-S~t-~d~HKwL~vP~~~~~~ll~r~~ 77 (98)
-.+|..=+.+++.++|++++.|+=||.+++.. ..+.....++..+ -+. -.+.|.+++| +.-.-.+.-++
T Consensus 159 NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~--~~~~~~~~~~~~~~vi~~~S~SK~~~~~-GlRiG~~v~~~ 229 (351)
T PRK14807 159 NPTGSVIEREDIIKIIEKSRGIVVVDEAYFEF--YGNTIVDVINEFENLIVLRTLSKAFGLA-GLRVGYAVANE 229 (351)
T ss_pred CCCCCCCCHHHHHHHHHhCCCEEEEeCcchhh--cccchHHHhhhCCCEEEEecchHhcccc-hhceeeeecCH
Confidence 35788889999999999988888899987432 2221111111112 233 4677999999 76544454443
No 262
>PRK06107 aspartate aminotransferase; Provisional
Probab=57.76 E-value=7.8 Score=30.67 Aligned_cols=61 Identities=5% Similarity=0.018 Sum_probs=36.2
Q ss_pred cccccC---CChHHHHHHHHHc-CceEEeecccchhhhcCCC---CCCCC-c--cCccccc-cCccccCCCCCC
Q psy2484 6 SLNGHV---DNVSLLQEICAKY-NLWLHLRGHNLSSLALNSH---SPSPL-Q--PGHSVSL-PLGTWLNLPLSL 68 (98)
Q Consensus 6 t~~Ga~---D~l~~i~~ic~~~-~lWlHVDga~~~al~~~~~---~~~gi-~--~ADS~t~-d~HKwL~vP~~~ 68 (98)
-.||.+ +.+.+|+++|++| |+|+-+|-++.-.. ..+. .+..+ . ...-+++ .++|.+++| +.
T Consensus 177 NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~-~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~p-Gl 248 (402)
T PRK06107 177 NPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIR-FDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMT-GW 248 (402)
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccc-cCCCCCCCHHHhCcCccCCEEEEeccchhhcCc-cc
Confidence 356644 4578888889998 99999999764221 1111 11111 0 1123333 458999999 76
No 263
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=57.43 E-value=10 Score=31.04 Aligned_cols=52 Identities=10% Similarity=0.093 Sum_probs=33.0
Q ss_pred CChHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccCCCCCCC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLNLPLSLP 69 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP~~~~ 69 (98)
+-+++|+++|++||+||=.|-. .|... ..+. ..-++ ..|-+ ...|-|+ + +.+
T Consensus 240 ~~l~~l~~l~~~~gillI~DEV~tg~gr-~g~~~a~~~~~v-~pDi~--t~sK~l~-~-G~p 295 (451)
T PRK06918 240 KFVQEVRNICSEHGILFVADEIQTGFAR-TGKYFAIEHFDV-VPDLI--TVSKSLG-A-GVP 295 (451)
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCcCc-cCceehhHhcCC-CCCEE--eeehhhc-C-CCc
Confidence 3489999999999999999995 22222 1111 11133 36633 5689888 5 544
No 264
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=57.28 E-value=10 Score=30.73 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=19.5
Q ss_pred ChHHHHHHHHHcCceEEeecc
Q psy2484 13 NVSLLQEICAKYNLWLHLRGH 33 (98)
Q Consensus 13 ~l~~i~~ic~~~~lWlHVDga 33 (98)
=+.+|+++|++||++|=+|=.
T Consensus 209 ~l~~l~~l~~~~g~llI~DEv 229 (408)
T PRK04612 209 FLARVRALCDQHDALLVLDEI 229 (408)
T ss_pred HHHHHHHHHHHcCCEEEEecc
Confidence 399999999999999999995
No 265
>PLN02397 aspartate transaminase
Probab=57.18 E-value=8.3 Score=31.12 Aligned_cols=55 Identities=7% Similarity=0.006 Sum_probs=34.4
Q ss_pred CChHHHHHHHHHcCceEEeecccchhhhcCC----C-CCCCCc-cC-ccccc-cCccccCCCCCC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNS----H-SPSPLQ-PG-HSVSL-PLGTWLNLPLSL 68 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~----~-~~~gi~-~A-DS~t~-d~HKwL~vP~~~ 68 (98)
+.+++|+++|++||+|+-+|-++..... .+ . ...... .. ..|++ .+-|-+++| +.
T Consensus 214 e~l~~i~~~a~~~~~~vI~De~Y~~l~~-~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~-G~ 276 (423)
T PLN02397 214 EQWEQISDLIKSKNHLPFFDSAYQGFAS-GDLDADAQSVRMFVEDGHEILVAQSYAKNMGLY-GE 276 (423)
T ss_pred HHHHHHHHHHHhCCcEEEEecccCCccC-CchhhhhHHHHHHHhcCCcEEEEEECcccCCCc-cc
Confidence 6788899999999999999997543321 11 0 000110 11 24444 678999998 75
No 266
>PRK06541 hypothetical protein; Provisional
Probab=56.67 E-value=12 Score=31.00 Aligned_cols=52 Identities=12% Similarity=0.085 Sum_probs=35.3
Q ss_pred ccCCC----hHHHHHHHHHcCceEEeeccc-chhhhcCCC--CCCCCccCccccccCccccC
Q psy2484 9 GHVDN----VSLLQEICAKYNLWLHLRGHN-LSSLALNSH--SPSPLQPGHSVSLPLGTWLN 63 (98)
Q Consensus 9 Ga~D~----l~~i~~ic~~~~lWlHVDga~-~~al~~~~~--~~~gi~~ADS~t~d~HKwL~ 63 (98)
|.+-| |++|+++|++||+.|-+|=.. |....-.-. ...|+ ..|=++ ..|.|+
T Consensus 235 G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv-~PDivt--~gK~l~ 293 (460)
T PRK06541 235 GCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGY-VPDIIT--CAKGIT 293 (460)
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCC-CCCEEE--eccccc
Confidence 55556 999999999999999999852 443221110 12355 477655 689998
No 267
>COG4861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.47 E-value=9.7 Score=31.22 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCccCccc
Q psy2484 15 SLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQPGHSV 54 (98)
Q Consensus 15 ~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~~ADS~ 54 (98)
.+++|.|+++|+|| +|++|-+-+-.|.. .+.|-.-+||+
T Consensus 88 p~~Ae~lrE~gl~F-iD~aGN~yl~~Pg~~idVrGr~s~~s~ 128 (345)
T COG4861 88 PSSAETLRERGLWF-IDGAGNAYLRHPGLLIDVRGRRSAVSA 128 (345)
T ss_pred hHHHHHHHHcCcEE-EecCCceeeecCceEEEeecCcCCccc
Confidence 57899999999998 78887666555544 35566666665
No 268
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=56.44 E-value=8.6 Score=30.36 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=21.7
Q ss_pred CCChHHHHHHHHHcCceEEeecccc
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGHNL 35 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga~~ 35 (98)
.+.+++|.++|++||+|+=+|-+++
T Consensus 198 ~~~~~~l~~~a~~~~~~iI~De~Y~ 222 (416)
T PRK09440 198 DEELEKLDALARQHNIPLLIDNAYG 222 (416)
T ss_pred HHHHHHHHHHHHHcCCcEEEeCCcc
Confidence 3558889999999999999999875
No 269
>PRK06290 aspartate aminotransferase; Provisional
Probab=56.09 E-value=8.7 Score=30.93 Aligned_cols=62 Identities=6% Similarity=-0.131 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHcCceEEeecccchhhhcCCC-C---CCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484 13 NVSLLQEICAKYNLWLHLRGHNLSSLALNSH-S---PSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 13 ~l~~i~~ic~~~~lWlHVDga~~~al~~~~~-~---~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r 75 (98)
.+++|.++|++||+|+=+|-++.....-.+. . +.+....+=+.-.+.|.+++| +.=.-++.-
T Consensus 200 ~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~-GlRiG~ii~ 265 (410)
T PRK06290 200 FYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMT-GWRLAFVVG 265 (410)
T ss_pred HHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCc-hhheEeEEe
Confidence 3788888999999999999976532211111 1 111111122345678999998 753333433
No 270
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=56.01 E-value=11 Score=31.67 Aligned_cols=55 Identities=11% Similarity=0.134 Sum_probs=30.6
Q ss_pred CCChHHHHHHHHHcCceEEeecccch--hhhcCCC-CCCCCccCccccccCccccCCC
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGHNLS--SLALNSH-SPSPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga~~~--al~~~~~-~~~gi~~ADS~t~d~HKwL~vP 65 (98)
-|++.+|++||++||+=.=|-+|||- .-.+... +-.-.-|-|=+.=..-|=|.||
T Consensus 171 ~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~GRvda~vqS~dkNF~VP 228 (389)
T PF05889_consen 171 PDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRVGRVDAFVQSTDKNFMVP 228 (389)
T ss_dssp ---HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHHSTCSEEEEEHHHHHCEE
T ss_pred CccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhcCCcceeeeecCCCEEec
Confidence 57899999999999999999998864 1111000 0000234455555555777777
No 271
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=55.90 E-value=13 Score=30.67 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=37.4
Q ss_pred ccCCC----hHHHHHHHHHcCceEEeecc-cchhhhcCCC--CCCCCccCccccccCccccC---CCCCCCeeEE
Q psy2484 9 GHVDN----VSLLQEICAKYNLWLHLRGH-NLSSLALNSH--SPSPLQPGHSVSLPLGTWLN---LPLSLPSPAR 73 (98)
Q Consensus 9 Ga~D~----l~~i~~ic~~~~lWlHVDga-~~~al~~~~~--~~~gi~~ADS~t~d~HKwL~---vP~~~~~~ll 73 (98)
|.+-| +++|+++|++||+.|=+|-. .|....-.-. ...|++ +|= +-..|.|+ +| .++++.
T Consensus 232 G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~-PDi--~~~gK~l~gG~~P--i~av~~ 301 (445)
T PRK09221 232 GVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVT-PDI--ITFAKGLTNGAIP--MGAVIA 301 (445)
T ss_pred CcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCC-CCE--EEeccccccCccc--ceeeEE
Confidence 55667 99999999999999999995 3332210000 113553 674 45578884 67 344444
No 272
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=55.79 E-value=11 Score=30.32 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=21.3
Q ss_pred cCCChHHHHHHHHHcCceEEeeccc
Q psy2484 10 HVDNVSLLQEICAKYNLWLHLRGHN 34 (98)
Q Consensus 10 a~D~l~~i~~ic~~~~lWlHVDga~ 34 (98)
..+-+.+|.++|++||+|+=+|-..
T Consensus 218 ~~~~~~~l~~l~~~~~~~lI~Dev~ 242 (425)
T PRK08088 218 SPAFMQRLRALCDEHGIMLIADEVQ 242 (425)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccc
Confidence 3344999999999999999999963
No 273
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=55.61 E-value=13 Score=30.01 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=19.1
Q ss_pred hHHHHHHHHHcCceEEeecc
Q psy2484 14 VSLLQEICAKYNLWLHLRGH 33 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga 33 (98)
+++|+++|++||+.|=+|=.
T Consensus 230 l~~l~~lc~~~g~llI~DEv 249 (433)
T PRK08117 230 LKKLREICDRHGILLIFDEV 249 (433)
T ss_pred HHHHHHHHHHcCCEEEEecc
Confidence 99999999999999999985
No 274
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=55.14 E-value=13 Score=30.47 Aligned_cols=60 Identities=15% Similarity=0.087 Sum_probs=38.3
Q ss_pred ccCCC----hHHHHHHHHHcCceEEeecc-cchhhhcCCC--CCCCCccCccccccCccccC---CCCCCCeeEE
Q psy2484 9 GHVDN----VSLLQEICAKYNLWLHLRGH-NLSSLALNSH--SPSPLQPGHSVSLPLGTWLN---LPLSLPSPAR 73 (98)
Q Consensus 9 Ga~D~----l~~i~~ic~~~~lWlHVDga-~~~al~~~~~--~~~gi~~ADS~t~d~HKwL~---vP~~~~~~ll 73 (98)
|.+=| +++|+++|++||+.|=+|=. .|....-.-. ...|+ .+|=+ -..|.|+ +| +++++.
T Consensus 229 G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv-~PDiv--t~gK~l~gG~~P--~gav~~ 298 (442)
T PRK13360 229 GVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGV-TPDLL--TCAKGLTNGAIP--MGAVFV 298 (442)
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCC-CCcee--eeeeccccCccc--eEEEEE
Confidence 44556 99999999999999999984 3433211111 12355 37744 4589996 78 344443
No 275
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=54.25 E-value=9.5 Score=29.95 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.0
Q ss_pred CChHHHHHHHHHcCceEEeecccc
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNL 35 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~ 35 (98)
+.+++|.++|++||+|+=+|-++.
T Consensus 185 ~~~~~l~~~a~~~~~~ii~De~Y~ 208 (393)
T TIGR03538 185 DTLKKLIELADQYGFIIASDECYS 208 (393)
T ss_pred HHHHHHHHHHHHCCEEEEECcchh
Confidence 348899999999999999999765
No 276
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=53.87 E-value=11 Score=30.66 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=32.8
Q ss_pred cCCChHHHHHHHHHcCceEEeecc-cchhhhcCCC--CCCCCccCccccccCccccC
Q psy2484 10 HVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSH--SPSPLQPGHSVSLPLGTWLN 63 (98)
Q Consensus 10 a~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~--~~~gi~~ADS~t~d~HKwL~ 63 (98)
..+.|++|+++|++||+-|=+|=. .|....-.-. ...|+ ..|=++ ..|-|+
T Consensus 227 ~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v-~pDi~~--~gK~l~ 280 (427)
T TIGR00508 227 HPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGV-VPDILC--VGKALT 280 (427)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCC-CCCEEE--echhhh
Confidence 458999999999999999999985 3322211000 12244 467444 589885
No 277
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=53.59 E-value=16 Score=30.76 Aligned_cols=58 Identities=16% Similarity=0.002 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHcCceEEeecccchhhhcCCCC-CCCC-ccCccccccCccccCCCCCCCeeEE
Q psy2484 13 NVSLLQEICAKYNLWLHLRGHNLSSLALNSHS-PSPL-QPGHSVSLPLGTWLNLPLSLPSPAR 73 (98)
Q Consensus 13 ~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~-~~gi-~~ADS~t~d~HKwL~vP~~~~~~ll 73 (98)
+++++.+||+++|+=+=||.+.|+-.- .+.. -..+ .-||=++...+|.|+=| ..+ +++
T Consensus 175 ~~~~l~~ia~~~~lpvivD~aSg~~v~-~e~~l~~~la~GaDLV~~SgdKllgGP-qaG-ii~ 234 (395)
T COG1921 175 SEEELVEIAHEKGLPVIVDLASGALVD-KEPDLREALALGADLVSFSGDKLLGGP-QAG-IIV 234 (395)
T ss_pred cHHHHHHHHHHcCCCEEEecCCccccc-cccchhHHHhcCCCEEEEecchhcCCC-ccc-eEe
Confidence 566799999999999999998765433 3442 2223 34899999999999999 654 444
No 278
>PRK07681 aspartate aminotransferase; Provisional
Probab=53.29 E-value=17 Score=28.70 Aligned_cols=60 Identities=10% Similarity=-0.065 Sum_probs=36.7
Q ss_pred cccCCC---hHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCccC-c-ccc-ccCccccCCCCCC
Q psy2484 8 NGHVDN---VSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQPG-H-SVS-LPLGTWLNLPLSL 68 (98)
Q Consensus 8 ~Ga~D~---l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~~A-D-S~t-~d~HKwL~vP~~~ 68 (98)
||.+=+ +.+|.++|++||+|+=+|-++.-...-.+. ....+... | -|. -.+.|.+++| +.
T Consensus 179 TG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~-Gl 246 (399)
T PRK07681 179 VPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLA-GS 246 (399)
T ss_pred cCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCc-cc
Confidence 454433 888999999999999999986533211111 11122111 2 233 3678999999 74
No 279
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=53.23 E-value=12 Score=30.65 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLN 63 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~ 63 (98)
+=+++|+++|++||+.|=+|=. .|.... -+. ...|+ ..|=++ ..|-|+
T Consensus 228 ~yl~~l~~lc~~~g~llI~DEv~tG~Grt-G~~~a~~~~gv-~PDiv~--~gK~l~ 279 (429)
T PRK06173 228 TYLVKARELCDQYGVLLIFDEIATGFGRT-GKLFALEHAGV-VPDIMC--IGKALT 279 (429)
T ss_pred HHHHHHHHHHHHcCCeEEecchhcCCCcC-CcchHHHhcCC-CCCEEE--eehhhh
Confidence 4578999999999999999984 332211 000 12355 378565 689885
No 280
>PRK06836 aspartate aminotransferase; Provisional
Probab=52.31 E-value=40 Score=26.58 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=38.1
Q ss_pred ccccccCCC---hHHHHHHHHH------cCceEEeecccchhhhcCC-C--C-CCCCccCccccccCccccCCCCCCC
Q psy2484 5 SSLNGHVDN---VSLLQEICAK------YNLWLHLRGHNLSSLALNS-H--S-PSPLQPGHSVSLPLGTWLNLPLSLP 69 (98)
Q Consensus 5 tt~~Ga~D~---l~~i~~ic~~------~~lWlHVDga~~~al~~~~-~--~-~~gi~~ADS~t~d~HKwL~vP~~~~ 69 (98)
...+|.+-| +++|.++|++ ||+|+=+|.++.... ... . . .+..++ .=+.....|-+++| +.-
T Consensus 178 ~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~-~i~~~S~SK~~~~p-GlR 252 (394)
T PRK06836 178 NNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIV-YDGAEVPYIFKYYDN-SIVVYSFSKSLSLP-GER 252 (394)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccc-cCCCCCCChHHccCc-EEEEecchhhccCc-cee
Confidence 345777655 6667777888 899999999865432 221 1 1 112221 22335678999999 753
No 281
>PLN02231 alanine transaminase
Probab=51.49 E-value=11 Score=31.92 Aligned_cols=26 Identities=19% Similarity=0.150 Sum_probs=22.3
Q ss_pred CCChHHHHHHHHHcCceEEeecccch
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGHNLS 36 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga~~~ 36 (98)
-+.+++|.++|++||+|+=.|-.+.-
T Consensus 290 ~e~l~~Iv~~a~~~~l~lI~DEvY~~ 315 (534)
T PLN02231 290 EENQRDIVEFCKQEGLVLLADEVYQE 315 (534)
T ss_pred HHHHHHHHHHHHHcCCEEEEEccchh
Confidence 35788999999999999999997654
No 282
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=50.85 E-value=12 Score=30.55 Aligned_cols=51 Identities=8% Similarity=0.014 Sum_probs=31.7
Q ss_pred CCChHHHHHHHHHcCceEEeecc-cchhhhcCCC-CCCCCccCccccccCccccCC
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSH-SPSPLQPGHSVSLPLGTWLNL 64 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~-~~~gi~~ADS~t~d~HKwL~v 64 (98)
.+.|.+|+++|++||+.|=+|-. .|......-. ..-|+ .+|=+| ..|-|+-
T Consensus 203 ~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~g~~~~~gv-~PDi~t--~gK~lgg 255 (431)
T PRK06209 203 DGFLHEVRRLCHENGALFILDEMITGFRWHMRGAQKLYGI-VPDLSC--FGKALGN 255 (431)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcccccCCcCcchhhHHhCC-Ccceee--ehhhhcC
Confidence 44599999999999999999994 3332110000 11244 356433 5788874
No 283
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=49.57 E-value=16 Score=29.38 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=34.4
Q ss_pred hHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccC--CCCCCCeeEE
Q psy2484 14 VSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLN--LPLSLPSPAR 73 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~--vP~~~~~~ll 73 (98)
+++|+++|++||+.|-+|-. .|. . .-+. ..-|++ +|=+++ .|-|+ +| +++++.
T Consensus 185 l~~lr~lc~~~gillI~DEv~tG~-R-tG~~~a~~~~gv~-PDiv~~--gK~lggG~P--~~a~~~ 243 (364)
T PRK04013 185 VKTLRDLTEDVGALLIADEVQSGL-R-TGKFLAIEHYKVE-PDIVTM--GKGIGNGVP--VSLTLT 243 (364)
T ss_pred HHHHHHHHHHcCCEEEEechhhcC-C-CCchhHHHhcCCC-CCEEEe--cccccCCce--eEEEEe
Confidence 99999999999999999995 332 2 2111 123443 776666 78874 55 444443
No 284
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=49.47 E-value=5 Score=35.03 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=54.5
Q ss_pred cccccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCC-CCC-ccCccccccCccccCCCCCCCeeEEecC
Q psy2484 4 GSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSP-SPL-QPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 4 Gtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~-~gi-~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
..|.-|.+=++++|.+.+.++++|+=+|-+-++-.-..+.+. ... ..+|=.|=.-||.|+-= +.++.+-+|+
T Consensus 174 npTYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~~~~tqS~HK~l~al-SQaS~iHv~~ 247 (557)
T COG1982 174 NPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNGGADFVTQSTHKLLAAL-SQASMIHVKD 247 (557)
T ss_pred cCccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhcCceEEEechhhhhhhh-hhhHHHhhCC
Confidence 356779999999999999999999999997555544444421 222 55788899999999876 5666766665
No 285
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=49.26 E-value=16 Score=29.56 Aligned_cols=46 Identities=7% Similarity=0.070 Sum_probs=30.7
Q ss_pred hHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccC
Q psy2484 14 VSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLN 63 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~ 63 (98)
+++|+++|++||++|=+|-. .|... ..+. ..-| ...| .....|.|+
T Consensus 221 l~~l~~lc~~~g~llI~DEv~tg~gr-~G~~~a~~~~~-~~pD--i~t~gK~l~ 270 (421)
T PRK09792 221 VAAIRRLCDEHGIVMIADEVQSGFAR-TGKLFAMDHYA-DKPD--LMTMAKSLA 270 (421)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCC-CCchhHHHhcC-CCCc--EEEeehhhc
Confidence 99999999999999999995 33322 1111 1113 2466 356689997
No 286
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=48.77 E-value=14 Score=29.06 Aligned_cols=25 Identities=16% Similarity=0.003 Sum_probs=21.0
Q ss_pred CCChHHHHHHHHHcCceEEeecccc
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGHNL 35 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga~~ 35 (98)
-+.+++|.++|++|++|+=.|-++.
T Consensus 191 ~~~~~~l~~~a~~~~~~ii~De~Y~ 215 (396)
T PRK09257 191 PEQWDELAELLKERGLIPFLDIAYQ 215 (396)
T ss_pred HHHHHHHHHHHHhCCcEEEEecccc
Confidence 3557889999999999999998754
No 287
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=48.49 E-value=17 Score=29.34 Aligned_cols=53 Identities=11% Similarity=0.133 Sum_probs=33.6
Q ss_pred ccCCChHHHHHHHHHcCceEEeecc-cchhhhcCC--CCCCCCccCccccccCccccCC
Q psy2484 9 GHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNS--HSPSPLQPGHSVSLPLGTWLNL 64 (98)
Q Consensus 9 Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~--~~~~gi~~ADS~t~d~HKwL~v 64 (98)
-.-+-+++|+++|++||++|=+|-. .|....-.- ....++ ..|=++ ..|+|+=
T Consensus 212 ~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v-~PDi~~--~~K~lg~ 267 (412)
T TIGR02407 212 ASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGI-EPDIVC--LSKSISG 267 (412)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCC-CCCEEE--echhccC
Confidence 3456789999999999999999995 333221000 012344 367444 5699853
No 288
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=48.31 E-value=24 Score=29.54 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=35.6
Q ss_pred CChHHHHHHHHHcCceEEeecccchhhhcCC-C-CCCCC----cc----Ccc--ccccCccccCCCCCC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNS-H-SPSPL----QP----GHS--VSLPLGTWLNLPLSL 68 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~-~-~~~gi----~~----ADS--~t~d~HKwL~vP~~~ 68 (98)
+.+++|.++|++||+|+=+|-++.....-.+ . .+..+ +. .|- +...+.|.+++| +.
T Consensus 219 e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glp-Gl 286 (496)
T PLN02376 219 DTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLP-GF 286 (496)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCC-cc
Confidence 3477788899999999999998765432221 1 11111 10 122 246899999999 76
No 289
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=48.29 E-value=17 Score=29.65 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=20.1
Q ss_pred CChHHHHHHHHHcCceEEeecc
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGH 33 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga 33 (98)
+-+++|+++|++||++|=+|-.
T Consensus 219 ~~l~~l~~l~~~~g~llI~DEv 240 (425)
T PRK07495 219 AFMKALRELCDQHGILLIADEV 240 (425)
T ss_pred HHHHHHHHHHHHcCCEEEEech
Confidence 4589999999999999999995
No 290
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=47.85 E-value=18 Score=29.85 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=31.6
Q ss_pred hHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccC--CC
Q psy2484 14 VSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLN--LP 65 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~--vP 65 (98)
+++|+++|++||+.|-+|=. .|. .. ... ...|+ ..|=++ ..|-|+ .|
T Consensus 224 l~~l~~lc~~~g~llI~DEv~tG~-R~-G~~ga~~~~gv-~PDi~~--~gK~lggG~p 276 (433)
T PRK00615 224 IEGIIQTCRRTGSLSIMDEVVTGF-RV-AQGGAAAIYHV-KPDITV--YGKILGGGLP 276 (433)
T ss_pred HHHHHHHHHHcCCEEEEEcccccc-cc-cHhHHHHhcCC-CCCeEE--EcccccCCcc
Confidence 56999999999999999985 332 21 111 12355 477554 689987 56
No 291
>PF05910 DUF868: Plant protein of unknown function (DUF868); InterPro: IPR008586 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=47.24 E-value=13 Score=29.74 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=31.4
Q ss_pred cCceEEeeccc-chhhhcC-CCC------CCCCccCccccccCccccCC--CCCC-CeeEEecCCC
Q psy2484 24 YNLWLHLRGHN-LSSLALN-SHS------PSPLQPGHSVSLPLGTWLNL--PLSL-PSPARTQRVP 78 (98)
Q Consensus 24 ~~lWlHVDga~-~~al~~~-~~~------~~gi~~ADS~t~d~HKwL~v--P~~~-~~~ll~r~~~ 78 (98)
-.||+=|||-- .=..-|. +.| ++|+ .=-|.||.|-||+- | +. ++++++|...
T Consensus 174 p~l~V~VDgk~v~~VkrL~WkFRGNqti~vdg~--~V~V~WDVHdWlF~~~~-~~~~AVFmFr~~~ 236 (274)
T PF05910_consen 174 PELWVSVDGKKVVQVKRLRWKFRGNQTIFVDGL--PVQVFWDVHDWLFNNGP-GSGHAVFMFRPRS 236 (274)
T ss_pred ceEEEEECCEEEEEEEEeeecccCceEEEECCe--EEEEEEEhhhhhhccCC-CCCceEEEEEecC
Confidence 36899999942 1111111 111 2333 12478999999999 5 44 6788898764
No 292
>KOG1360|consensus
Probab=47.07 E-value=26 Score=30.50 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=42.4
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecc-----cchhhh-cCCCCCCCCccCccccccCccccCCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGH-----NLSSLA-LNSHSPSPLQPGHSVSLPLGTWLNLP 65 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga-----~~~al~-~~~~~~~gi~~ADS~t~d~HKwL~vP 65 (98)
...|++=||+||.|++++||.---+|-. +|.--+ ..| +-.-+++-|=|+=.+.|-+|.-
T Consensus 314 SM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvge-rdGvm~kvDiIsGTLgKafGcV 378 (570)
T KOG1360|consen 314 SMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGE-RDGVMHKVDIISGTLGKAFGCV 378 (570)
T ss_pred ccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccc-cCCcchhhhhcccchhhhcccc
Confidence 3579999999999999999999888862 221111 112 2224588899999999988864
No 293
>PRK07049 methionine gamma-lyase; Validated
Probab=47.07 E-value=29 Score=28.42 Aligned_cols=57 Identities=7% Similarity=0.053 Sum_probs=40.6
Q ss_pred ccccCCChHHHHHHHHH------cCceEEeecccchhhhcCCCCCCCCccCccccccCccccC-CCCCC
Q psy2484 7 LNGHVDNVSLLQEICAK------YNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLN-LPLSL 68 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~------~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~-vP~~~ 68 (98)
-+|.+=++++|.+|+++ +++|+=||-.+...+... .+ -..+|=+.-.+.|.++ .| ++
T Consensus 186 Ptg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~--pl--~~g~divv~S~SK~~gG~~-gl 249 (427)
T PRK07049 186 PTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQK--PL--EHGADLSVYSLTKYVGGHS-DL 249 (427)
T ss_pred CCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCC--cc--ccCCCEEEEcCceeecCCC-Cc
Confidence 46777789999999987 899999999754332211 11 1236878889999999 56 54
No 294
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=47.03 E-value=33 Score=28.08 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=35.8
Q ss_pred ccccCCChHHHHHHHHHcC-ceEEeecccchhhhcCCCCCCCCcc-CccccccCccccC
Q psy2484 7 LNGHVDNVSLLQEICAKYN-LWLHLRGHNLSSLALNSHSPSPLQP-GHSVSLPLGTWLN 63 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~-lWlHVDga~~~al~~~~~~~~gi~~-ADS~t~d~HKwL~ 63 (98)
.+..+=||++|+++|+++| +.+=||.-.+......+ ++. ||=+.-..-|.++
T Consensus 152 P~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~p-----L~~GaDivv~S~TKyl~ 205 (386)
T PF01053_consen 152 PTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYNQNP-----LELGADIVVHSATKYLS 205 (386)
T ss_dssp TTTB---HHHHHHHHHHTTT-EEEEECTTTHTTTC-G-----GGGT-SEEEEETTTTTT
T ss_pred cccccccHHHHHHHHHHhCCceEEeeccccceeeecc-----CcCCceEEEeecccccc
Confidence 3456678999999999999 99999997666544432 222 8888888889887
No 295
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=46.31 E-value=24 Score=27.30 Aligned_cols=59 Identities=5% Similarity=-0.027 Sum_probs=37.4
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCc-cc-cccCccccCCCCCC
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGH-SV-SLPLGTWLNLPLSL 68 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~AD-S~-t~d~HKwL~vP~~~ 68 (98)
--||.+=+.++|.++++ +|+|+-+|.++.-. . .+.....++..| .+ ...+-|-+++| +.
T Consensus 151 NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~-~-~~~~~~~~~~~~~vi~l~S~SK~~~l~-Gl 211 (337)
T PRK03967 151 NPTGNLQPEEEILKVLE-TGKPVVLDEAYAEF-S-GKSLIGLIDEYPNLILLRTFSKAFGLA-GI 211 (337)
T ss_pred CCCCCCCCHHHHHHHHh-cCCEEEEECchhhh-c-ccchHHHHhhCCCEEEEecchHhhcch-hh
Confidence 34677778899999995 79999999986431 1 111111111112 23 35788999988 74
No 296
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=46.27 E-value=19 Score=29.81 Aligned_cols=57 Identities=7% Similarity=0.001 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccC--CCCCCCeeEEe
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLN--LPLSLPSPART 74 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~--vP~~~~~~ll~ 74 (98)
+=+++|+++|++||+.|-+|=. .|.... -.. ...|+ .+|=++ ..|.|+ +| .++++..
T Consensus 243 ~yl~~l~~lc~~~g~llI~DEv~tG~Grt-G~~~a~~~~gv-~PDiv~--~gK~l~gG~p--i~av~~~ 305 (457)
T PRK05639 243 NFFKELKKLLDEHGILLVMDEVQTGIGRT-GKWFASEWFEV-KPDLII--FGKGVASGMG--LSGVIGR 305 (457)
T ss_pred HHHHHHHHHHHHcCCEEEEechhhccCcC-chHHHHHhcCC-CCCEEE--echhhcCCCc--ceeEEeh
Confidence 3489999999999999999984 333221 110 12366 488666 589995 66 4444443
No 297
>PRK06062 hypothetical protein; Provisional
Probab=46.07 E-value=22 Score=29.28 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=39.0
Q ss_pred ccCCC----hHHHHHHHHHcCceEEeecc-cchhhhcCC--CCCCCCccCccccccCccccCC---CCCCCeeEEe
Q psy2484 9 GHVDN----VSLLQEICAKYNLWLHLRGH-NLSSLALNS--HSPSPLQPGHSVSLPLGTWLNL---PLSLPSPART 74 (98)
Q Consensus 9 Ga~D~----l~~i~~ic~~~~lWlHVDga-~~~al~~~~--~~~~gi~~ADS~t~d~HKwL~v---P~~~~~~ll~ 74 (98)
|.+=| |++|+++|++||+-|=+|=. .|....-.- ....|+ ..|=+| ..|-|+- | +++++..
T Consensus 228 G~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv-~PDi~t--~gK~lggG~~P--igav~~~ 298 (451)
T PRK06062 228 GILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGV-VPDLIT--FAKGVNSGYVP--LGGVAIS 298 (451)
T ss_pred CcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCC-CCCeee--echhhhcCCcC--cEEEEEc
Confidence 44556 99999999999999999984 433221110 012466 588555 5899884 6 4444443
No 298
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=45.79 E-value=20 Score=29.29 Aligned_cols=46 Identities=7% Similarity=0.019 Sum_probs=31.2
Q ss_pred hHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccC
Q psy2484 14 VSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLN 63 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~ 63 (98)
|++|+++|++||+-|=+|=. .|..+. .+. ...|+ .+|=+++ .|-|+
T Consensus 242 l~~lr~lc~~~gillI~DEV~tGfgRt-G~~fa~~~~gv-~PDiv~~--gK~l~ 291 (443)
T PRK06058 242 LPALLEWCRENGVVFIADEVQTGFART-GAWFACEHEGI-VPDLITT--AKGIA 291 (443)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCcC-hhhhHHHhcCC-CCCEEEE--ccccc
Confidence 99999999999999999984 333221 111 12355 3677776 68886
No 299
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=45.46 E-value=20 Score=29.66 Aligned_cols=48 Identities=19% Similarity=0.128 Sum_probs=32.4
Q ss_pred hHHHHHHHHHcCceEEeecc-cchhhhcCCC--CCCCCccCccccccCccccCC
Q psy2484 14 VSLLQEICAKYNLWLHLRGH-NLSSLALNSH--SPSPLQPGHSVSLPLGTWLNL 64 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga-~~~al~~~~~--~~~gi~~ADS~t~d~HKwL~v 64 (98)
|++|+++|++||+-|-+|=. .|....-.-. ...|+ ..|=++ ..|.|+-
T Consensus 251 l~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv-~PDiv~--~gKgl~g 301 (459)
T PRK06082 251 WKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGI-EPDILC--IGKGLGG 301 (459)
T ss_pred HHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCC-CCCEEE--ecccccC
Confidence 99999999999999999984 3332211000 12366 488666 6899873
No 300
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=45.15 E-value=16 Score=29.66 Aligned_cols=55 Identities=7% Similarity=0.177 Sum_probs=34.5
Q ss_pred CChHHHHHHHHHcCceEEeecccchhhhcCC-CCCCCCccCc----cccc-cCccccCCCCCC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNS-HSPSPLQPGH----SVSL-PLGTWLNLPLSL 68 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~-~~~~gi~~AD----S~t~-d~HKwL~vP~~~ 68 (98)
+.|++|+++|++|++|+=.|-.+-... ... .....++.++ -|++ ...|-++++ +.
T Consensus 183 ~~l~~i~~~a~~~~i~ii~DEiY~~l~-yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mt-Gw 243 (393)
T COG0436 183 EELKAIVELAREHDIIIISDEIYEELV-YDGAEHPSILELAGARDRTITINSFSKTYGMT-GW 243 (393)
T ss_pred HHHHHHHHHHHHcCeEEEEehhhhhcc-cCCCCcCCHhhcCCCcceEEEEeccccccccc-cc
Confidence 568999999999999999999653222 222 1111222222 3444 467888888 65
No 301
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=43.84 E-value=22 Score=28.10 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=18.6
Q ss_pred cCCChHHHHHHHHHcCceEE
Q psy2484 10 HVDNVSLLQEICAKYNLWLH 29 (98)
Q Consensus 10 a~D~l~~i~~ic~~~~lWlH 29 (98)
.+|||+.+.+-|++.||=+|
T Consensus 68 g~DpL~~~I~eaHkrGlevH 87 (311)
T PF02638_consen 68 GFDPLEFMIEEAHKRGLEVH 87 (311)
T ss_pred CccHHHHHHHHHHHcCCEEE
Confidence 38999999999999999888
No 302
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=43.48 E-value=22 Score=29.76 Aligned_cols=55 Identities=13% Similarity=0.006 Sum_probs=34.0
Q ss_pred hHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccCCCCCCCeeEE
Q psy2484 14 VSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLNLPLSLPSPAR 73 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll 73 (98)
|++|+++|++||+.|=+|=. .|. . .... ..-|+ .+|=+|+ .|.|+--|-++++..
T Consensus 269 l~~lr~lc~~~g~lLI~DEV~tGf-R-~g~~ga~~~~gv-~PDi~t~--gK~lggG~Pigav~g 327 (474)
T PLN02482 269 LEGLREITKENGALLVFDEVMTGF-R-IAYGGAQEYFGI-TPDLTTL--GKVIGGGLPVGAYGG 327 (474)
T ss_pred HHHHHHHHHHcCCEEEEeccccCe-e-cCcchHhHHhCC-CCCEEEe--cchhhCCCceEEEEE
Confidence 56899999999999999985 322 2 2211 12355 4775544 899864211444433
No 303
>PRK07483 hypothetical protein; Provisional
Probab=42.80 E-value=23 Score=29.19 Aligned_cols=55 Identities=15% Similarity=0.231 Sum_probs=36.5
Q ss_pred hHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccC---CCCCCCeeEEe
Q psy2484 14 VSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLN---LPLSLPSPART 74 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~---vP~~~~~~ll~ 74 (98)
|++|+++|++||+-|-+|=. .|..+. -+. ..-|++ +|=+++ .|-|+ +| +++++..
T Consensus 223 l~~lr~lc~~~gillI~DEV~tGfGRt-G~~~a~~~~gv~-PDiv~~--gK~l~gG~~P--i~av~~~ 284 (443)
T PRK07483 223 FKRIREVCDRYGVLLILDEVMCGMGRT-GTLFACEEDGVA-PDLVTI--AKGLGAGYQP--IGAVLAS 284 (443)
T ss_pred HHHHHHHHHHhCCEEEEecceeCcccC-cHHHHHhhcCCC-CCeeee--hhhhccCccc--cEEEEEc
Confidence 89999999999999999984 333321 111 123553 787776 78887 57 4444443
No 304
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=42.74 E-value=31 Score=25.03 Aligned_cols=27 Identities=15% Similarity=0.179 Sum_probs=23.5
Q ss_pred cccccCCChHHHHHHHHHcCceEEeec
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRG 32 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDg 32 (98)
...+..|+|+.+.+.|+++||=++|--
T Consensus 59 ~~~~~~d~l~~~L~~A~~~Gmkv~~Gl 85 (166)
T PF14488_consen 59 FYMPPVDLLEMILDAADKYGMKVFVGL 85 (166)
T ss_pred ccCCcccHHHHHHHHHHHcCCEEEEeC
Confidence 345788999999999999999999854
No 305
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=42.40 E-value=28 Score=27.70 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=19.0
Q ss_pred ccccccCCChHHHHHHHHHcCceEEeec
Q psy2484 5 SSLNGHVDNVSLLQEICAKYNLWLHLRG 32 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDg 32 (98)
....-...+|.+..++|+++|||+-+.=
T Consensus 56 ~~df~g~~dl~~f~~~a~~~gl~vilrp 83 (319)
T PF01301_consen 56 QFDFTGNRDLDRFLDLAQENGLYVILRP 83 (319)
T ss_dssp B---SGGG-HHHHHHHHHHTT-EEEEEE
T ss_pred cccccchhhHHHHHHHHHHcCcEEEecc
Confidence 3344445789999999999999988764
No 306
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=42.38 E-value=20 Score=28.14 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=21.4
Q ss_pred CChHHHHHHHHHcCceEEeecccch
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNLS 36 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~~ 36 (98)
+.+++|.++|++|++|+=+|-++.-
T Consensus 186 ~~~~~l~~~a~~~~~~ii~De~y~~ 210 (396)
T PRK09147 186 DDWKKLFALSDRYGFVIASDECYSE 210 (396)
T ss_pred HHHHHHHHHHHHcCeEEEeeccccc
Confidence 4688889999999999999997654
No 307
>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]
Probab=41.94 E-value=10 Score=32.66 Aligned_cols=46 Identities=13% Similarity=0.252 Sum_probs=33.4
Q ss_pred HHHHHHHcCceEEeecccchhhhcCCC----CCCCCccCccccccCcccc
Q psy2484 17 LQEICAKYNLWLHLRGHNLSSLALNSH----SPSPLQPGHSVSLPLGTWL 62 (98)
Q Consensus 17 i~~ic~~~~lWlHVDga~~~al~~~~~----~~~gi~~ADS~t~d~HKwL 62 (98)
..+..+++++|||+|-.+|+..++... ...-+..|=+++....|--
T Consensus 465 ~~k~~~~~DlwfHa~~~~gshvvik~~~~~~~e~ti~eAA~~Aa~~Ska~ 514 (564)
T COG1293 465 VKKYAEKDDLWFHADDIPGSHVVIKTEGKEPSEETILEAAQLAASYSKAW 514 (564)
T ss_pred HHhhcccCcEEEEccCCCCCeEEEeCCCCCCChHHHHHHHHHHHHhchHh
Confidence 567889999999999999999888752 2345555666666655543
No 308
>PLN02452 phosphoserine transaminase
Probab=41.64 E-value=13 Score=30.08 Aligned_cols=62 Identities=6% Similarity=-0.036 Sum_probs=38.0
Q ss_pred CCccccccc-CCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEecC
Q psy2484 2 EIGSSLNGH-VDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 2 taGtt~~Ga-~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
|-..|.+|. +.|+.++.+ .-+=||+. ..++.-+. ++.-|-+..-.||.|+.| +++.+.++++
T Consensus 152 ~hnETstGv~~~~~~~i~~------~~lvVDa~Ss~g~~pid------v~~~~v~~~saqK~lGP~-Gl~~v~vr~~ 215 (365)
T PLN02452 152 CANETIHGVEFKDYPDVGN------VPLVADMSSNFLSKPVD------VSKYGVIYAGAQKNVGPS-GVTIVIIRKD 215 (365)
T ss_pred CCCCCCCcEecCcccccCC------CeEEEECCccccCcccC------HHHcCEEEEecccccCCC-CeEEEEEcHH
Confidence 445788998 688877753 56778985 32332222 222223446999999955 8875555443
No 309
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=40.94 E-value=11 Score=30.73 Aligned_cols=65 Identities=5% Similarity=-0.239 Sum_probs=44.9
Q ss_pred CCcccccccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCCCCCCCccCccccccCccccCCCCCCCeeEEe
Q psy2484 2 EIGSSLNGHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPART 74 (98)
Q Consensus 2 taGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~ 74 (98)
|-..|.+|...|+++|...+ ++.=+=||+. ..++.- ..++ ..|-+..-..|-|+.|=+++.+.+.
T Consensus 134 vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~---l~~d---~iDv~~tgsQK~L~~ppGls~v~vs 199 (374)
T TIGR01365 134 TWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQD---LDYH---KLDVVTFSWQKVLGGEGAHGMLILS 199 (374)
T ss_pred ecCCCchheecccccccccc--CCCcEEEEccchhcCCC---CChh---HCcEEEEechhccCCCCceEEEEEC
Confidence 55689999999997665322 5778889994 333222 2233 3899999999999999566554443
No 310
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=40.91 E-value=26 Score=28.79 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHcCceEEeecccchhhhcC-CC-C----CCCCc---cCcc--ccccCccccCCCCCC
Q psy2484 13 NVSLLQEICAKYNLWLHLRGHNLSSLALN-SH-S----PSPLQ---PGHS--VSLPLGTWLNLPLSL 68 (98)
Q Consensus 13 ~l~~i~~ic~~~~lWlHVDga~~~al~~~-~~-~----~~gi~---~ADS--~t~d~HKwL~vP~~~ 68 (98)
.+.+|.++|++||+++-+|-.+.....-. +. . ..... ..+- +.+.+-|-+++| +.
T Consensus 221 ~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~-Gl 286 (447)
T PLN02607 221 VLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLP-GF 286 (447)
T ss_pred HHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCC-cc
Confidence 37899999999999999999765433211 11 1 11111 0111 346788999998 76
No 311
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=40.74 E-value=33 Score=29.22 Aligned_cols=61 Identities=8% Similarity=-0.012 Sum_probs=42.7
Q ss_pred ccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCccccccCccccCCC-CCCCeeEE
Q psy2484 9 GHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP-LSLPSPAR 73 (98)
Q Consensus 9 Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS~t~d~HKwL~vP-~~~~~~ll 73 (98)
+.+=++++|++||+++|+=|=||--.+....+.+. -..||=++=..-||++=- -+.+.+++
T Consensus 161 ~~v~Die~ia~iAh~~gvpliVDNT~atpyl~rP~----~hGADIVvHS~TK~igGhGt~iGG~iV 222 (426)
T COG2873 161 LDVLDIEAIAEIAHRHGVPLIVDNTFATPYLCRPI----EHGADIVVHSATKYIGGHGTAIGGVIV 222 (426)
T ss_pred ccccCHHHHHHHHHHcCCcEEEecCCCcceecchh----hcCCCEEEEeecccccCCccccceEEE
Confidence 45668999999999999999999965544444333 245787888888998753 12344444
No 312
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=40.53 E-value=38 Score=26.08 Aligned_cols=30 Identities=7% Similarity=-0.047 Sum_probs=24.8
Q ss_pred cccccCCChHHHHHHHHHcCceEEeecccc
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRGHNL 35 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDga~~ 35 (98)
..||.+=+.+++.+|++..+.|+.+|.++.
T Consensus 164 NPtG~~~~~~~~~~i~~~~~~~ii~De~y~ 193 (356)
T PRK04870 164 NPTGNLFDDADVERIIEAAPGLVVVDEAYQ 193 (356)
T ss_pred CCCCCCCCHHHHHHHHHHCCCEEEEECCch
Confidence 457888888888888887799999999764
No 313
>PRK07036 hypothetical protein; Provisional
Probab=40.48 E-value=27 Score=29.01 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=35.6
Q ss_pred hHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccC---CCCCCCeeEE
Q psy2484 14 VSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLN---LPLSLPSPAR 73 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~---vP~~~~~~ll 73 (98)
+++|+++|++||+-|-+|=. .|..+.-.-. ..-|++ +|=+++ .|.|+ +| +++++.
T Consensus 243 l~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~-PDivt~--gK~l~gG~~P--i~av~~ 304 (466)
T PRK07036 243 HARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQ-PDIITF--AKGLTSGYQP--LGAVII 304 (466)
T ss_pred HHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCC-CCEEEE--ccccccCccc--cEEEEE
Confidence 89999999999999999984 3433321100 123554 786665 79886 46 444443
No 314
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=39.72 E-value=28 Score=28.80 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=39.2
Q ss_pred ccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccC---CCCCCCeeEEe
Q psy2484 9 GHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLN---LPLSLPSPART 74 (98)
Q Consensus 9 Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~---vP~~~~~~ll~ 74 (98)
-.-+=|++|+++|++||+=|-+|=. .|..+. -+. ..-|+ .+|=+|+ .|.|+ +| .++++..
T Consensus 240 ~~~~yl~~lr~lc~~~gillI~DEV~TG~GRt-G~~fa~~~~gv-~PDivt~--gKgl~gG~~P--i~av~~~ 306 (453)
T PRK06943 240 HDPSYLRGLRALCDRYGVHLIADEIAVGCGRT-GTFFACEQAGV-WPDFLCL--SKGISGGYLP--LSLVLSR 306 (453)
T ss_pred CCHHHHHHHHHHHHHcCCEEEeechhhCCCCC-cchhHHHhCCC-CCCeEee--ehhhccCccc--ceEEEEc
Confidence 3445589999999999999999984 343331 111 12366 3888887 78877 57 3444443
No 315
>PRK05965 hypothetical protein; Provisional
Probab=39.51 E-value=28 Score=28.76 Aligned_cols=61 Identities=7% Similarity=0.030 Sum_probs=38.6
Q ss_pred ccCCChHHHHHHHHHcCceEEeecc-cchhhhcCCC--CCCCCccCccccccCccccC---CCCCCCeeEEe
Q psy2484 9 GHVDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSH--SPSPLQPGHSVSLPLGTWLN---LPLSLPSPART 74 (98)
Q Consensus 9 Ga~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~--~~~gi~~ADS~t~d~HKwL~---vP~~~~~~ll~ 74 (98)
-.-+=|++|+++|++||+=|-+|=. .|+.+.-.-. ..-|+ .+|=+++ .|-|+ +| .++++..
T Consensus 233 p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~--gKgl~gG~~P--i~av~~~ 299 (459)
T PRK05965 233 PPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGV-VPDLMTV--AKGLTSGYVP--MGAVLMS 299 (459)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCC-CCCeEEe--chhhccCCcc--eeEEEEc
Confidence 3445589999999999999999984 3333321100 12355 4887776 67776 57 4444443
No 316
>PRK06855 aminotransferase; Validated
Probab=39.10 E-value=26 Score=28.33 Aligned_cols=55 Identities=13% Similarity=0.148 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCC-ccCcccc-ccCccccCCCCCC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPL-QPGHSVS-LPLGTWLNLPLSL 68 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi-~~ADS~t-~d~HKwL~vP~~~ 68 (98)
+.+++|.++|++||+|+=.|-.+.-... ... .+..+ ..-+.|. -.+-|.+++| +.
T Consensus 191 ~~~~~l~~~a~~~~~~II~De~Y~~l~~-~~~~~~sl~~~~~~~~~I~~~S~SK~~~~p-Gl 250 (433)
T PRK06855 191 EILREIVDIAREYDLFIICDEIYNNIVY-NGKKTVPLSEVIGDVPGIALKGISKELPWP-GS 250 (433)
T ss_pred HHHHHHHHHHHHcCCEEEEecccccccc-CCCCCCCHHHHcCcCCeEEEecCccccCCC-cc
Confidence 4577888899999999999997653322 211 11111 1111233 4568999998 75
No 317
>PLN02187 rooty/superroot1
Probab=37.96 E-value=40 Score=27.75 Aligned_cols=57 Identities=11% Similarity=0.049 Sum_probs=35.7
Q ss_pred CChHHHHHHHHHcCceEEeecccchhhhcCCC--CCCCCc-cCccccc-cCccccCCCCCCC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSH--SPSPLQ-PGHSVSL-PLGTWLNLPLSLP 69 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~--~~~gi~-~ADS~t~-d~HKwL~vP~~~~ 69 (98)
+.+++|.++|++||+|+=+|-++.-...-.+. .+..+. ....+++ .+-|.+++| +.=
T Consensus 224 e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~p-GlR 284 (462)
T PLN02187 224 DHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVP-GWK 284 (462)
T ss_pred HHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCc-cce
Confidence 34889999999999999999976442221111 111111 1124443 678999999 863
No 318
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=37.94 E-value=30 Score=28.85 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=38.6
Q ss_pred CCChHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccC---CCCCCCeeEEe
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLN---LPLSLPSPART 74 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~---vP~~~~~~ll~ 74 (98)
-+=+++++++|++||+=|.+|=. .|..+. -+. ...|+ .+|=+++ .|-|+ +| .++++..
T Consensus 257 ~~fl~~lr~lc~~~gillI~DEV~TGfGRt-G~~~a~e~~gv-~PDiv~~--gKgl~gG~~P--laav~~~ 321 (472)
T PRK08742 257 PAYLRRARELCDAHGAFLIADEIATGFGRT-GTLFACEQAGV-MPDLLCL--SKGLTGGFLP--LSAVLAT 321 (472)
T ss_pred HHHHHHHHHHHHHcCCEEEEechhhCCCCC-ccchHHHhcCC-CCCEEEE--cccccCCCCC--cceeecc
Confidence 44588999999999999999984 333331 111 12366 4888887 78886 68 3444443
No 319
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=37.12 E-value=33 Score=28.23 Aligned_cols=46 Identities=13% Similarity=0.074 Sum_probs=30.4
Q ss_pred hHHHHHHHHHcCceEEeeccc-chhhhcCCC---CCCCCccCccccccCccccC
Q psy2484 14 VSLLQEICAKYNLWLHLRGHN-LSSLALNSH---SPSPLQPGHSVSLPLGTWLN 63 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga~-~~al~~~~~---~~~gi~~ADS~t~d~HKwL~ 63 (98)
+++|+++|++||++|=+|-.. |... ..+. ...|++ .|=+++ .|-|+
T Consensus 227 l~~l~~l~~~~g~llI~DEv~~g~gr-~G~~~a~~~~~~~-pDiitl--sK~l~ 276 (443)
T PRK08360 227 FKKLKKILDEHGILLVVDEVQSGLGR-TGKWFAIEHFGVE-PDIITL--GKPLG 276 (443)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCc-CccchhhhhcCCC-CCEEEe--ccccc
Confidence 999999999999999999853 3222 1111 112443 565544 89998
No 320
>PRK08297 L-lysine aminotransferase; Provisional
Probab=36.78 E-value=33 Score=28.21 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=31.8
Q ss_pred CChHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCcccc
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWL 62 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL 62 (98)
+-|++|+++|++||+.|=+|=. .|.... .+. ...|+ ..|=++ ..|.+
T Consensus 246 ~yl~~lr~lc~~~g~llI~DEV~tGfGRt-G~~~a~~~~gv-~PDiv~--~gK~l 296 (443)
T PRK08297 246 EFFAAMRELCDEHDALLIFDEVQTGVGLT-GTAWAYQQLGV-RPDIVA--FGKKT 296 (443)
T ss_pred HHHHHHHHHHHHcCCEEEEechhhccCcc-chHHHHHhcCC-CCCEEE--ecccc
Confidence 7899999999999999999985 343221 111 11244 477665 47886
No 321
>PRK06105 aminotransferase; Provisional
Probab=36.51 E-value=33 Score=28.34 Aligned_cols=49 Identities=14% Similarity=0.077 Sum_probs=32.8
Q ss_pred hHHHHHHHHHcCceEEeecc-cchhhhcCC--CCCCCCccCccccccCccccC---CC
Q psy2484 14 VSLLQEICAKYNLWLHLRGH-NLSSLALNS--HSPSPLQPGHSVSLPLGTWLN---LP 65 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga-~~~al~~~~--~~~~gi~~ADS~t~d~HKwL~---vP 65 (98)
+++|+++|++||+-|=+|=. .|..+.-.- ....|++ .|=++ ..|-|+ +|
T Consensus 241 l~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~-PDi~~--~gK~lggG~~P 295 (460)
T PRK06105 241 WEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIK-PDILV--MSKQLSSSYQP 295 (460)
T ss_pred HHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCC-CCeee--eecccccCccc
Confidence 89999999999999999984 344332110 0123554 78554 578886 57
No 322
>PLN02368 alanine transaminase
Probab=36.38 E-value=29 Score=28.25 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=21.6
Q ss_pred CCChHHHHHHHHHcCceEEeecccch
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGHNLS 36 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga~~~ 36 (98)
-+.+++|.++|++||+|+=.|-++.-
T Consensus 229 ~e~l~~l~~~a~~~~~~II~DE~Y~~ 254 (407)
T PLN02368 229 EANLREILKFCYQERLVLLGDEVYQQ 254 (407)
T ss_pred HHHHHHHHHHHHHcCCEEEEEccccc
Confidence 35678889999999999999997543
No 323
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=36.18 E-value=34 Score=28.30 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=36.2
Q ss_pred CCChHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccC---CCCCCCeeEEe
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLN---LPLSLPSPART 74 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~---vP~~~~~~ll~ 74 (98)
-+=|++|+++|++||+-|=+|=. .|..+. -+. ...|++ +|=+++ .|-|+ +| +++++..
T Consensus 244 ~~fl~~lr~lc~~~g~llI~DEV~TG~GRt-G~~~a~~~~gv~-PDiv~~--gK~l~gG~~P--i~av~~~ 308 (460)
T PRK06916 244 KGYLKGLRNLCTKYNVLFITDEVATGFGRT-GKMFACEHENVT-PDIMTA--GKGLTGGYLP--IAITVTT 308 (460)
T ss_pred HHHHHHHHHHHHHcCCEEEeechhhCCCcC-chhhHHHhcCCC-CCeeee--ehhhhcCccc--cceeeec
Confidence 34489999999999999999984 333221 111 123553 776654 78776 57 3444443
No 324
>PRK06149 hypothetical protein; Provisional
Probab=35.37 E-value=39 Score=30.75 Aligned_cols=62 Identities=5% Similarity=-0.099 Sum_probs=40.2
Q ss_pred ccCCC----hHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccC--CCCCCCeeEEec
Q psy2484 9 GHVDN----VSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLN--LPLSLPSPARTQ 75 (98)
Q Consensus 9 Ga~D~----l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~--vP~~~~~~ll~r 75 (98)
|.+=| |++|+++|++||+.|-+|=. .|....=... ...|+ ..|=+|+ .|-|+ .| +++++..+
T Consensus 758 G~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv-~PDivt~--gK~lg~G~P--l~av~~~~ 829 (972)
T PRK06149 758 GGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGV-VPDIITM--AKGMGNGHP--LGAVITRR 829 (972)
T ss_pred CcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCC-CCCEEEe--cccccCCee--eEEEEEcH
Confidence 55557 99999999999999999984 3443321111 12366 5887755 78887 46 44444443
No 325
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=34.94 E-value=35 Score=29.11 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=18.1
Q ss_pred hHHHHHHHHHcCceEEeec
Q psy2484 14 VSLLQEICAKYNLWLHLRG 32 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDg 32 (98)
|+++++||++||+-|=.|=
T Consensus 238 l~~vr~iC~ky~ILlI~DE 256 (449)
T COG0161 238 LKRVREICDKYGILLIADE 256 (449)
T ss_pred HHHHHHHHHHcCcEEEeec
Confidence 7899999999999999997
No 326
>PRK07482 hypothetical protein; Provisional
Probab=34.85 E-value=37 Score=28.10 Aligned_cols=58 Identities=12% Similarity=0.061 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHcCceEEeecc-cchhhhcCCC--CCCCCccCccccccCccccC---CCCCCCeeEEe
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGH-NLSSLALNSH--SPSPLQPGHSVSLPLGTWLN---LPLSLPSPART 74 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~--~~~gi~~ADS~t~d~HKwL~---vP~~~~~~ll~ 74 (98)
+=+++|+++|++||+=|=+|=. .|+.+.-.-. ...|+ .+|=+++ .|.|+ +| .++++..
T Consensus 241 ~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~--gKgl~gG~~P--i~av~~~ 304 (461)
T PRK07482 241 GYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGI-EPDLITV--AKGLTSAYAP--LSGSIVG 304 (461)
T ss_pred HHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCC-CCCEEEE--ccccccCccc--cceeeec
Confidence 3478999999999999999984 4443322111 12366 3888875 78885 47 3444443
No 327
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=34.69 E-value=32 Score=28.39 Aligned_cols=58 Identities=16% Similarity=0.144 Sum_probs=34.9
Q ss_pred CChHHHHHHHHHcCceEEeecccchhhhcC-CC-C-CC--------CCccCc--cccccCccccCCCCCCCe
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNLSSLALN-SH-S-PS--------PLQPGH--SVSLPLGTWLNLPLSLPS 70 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~-~~-~-~~--------gi~~AD--S~t~d~HKwL~vP~~~~~ 70 (98)
+.+.+|.++|++||+|+=+|-++.....-. +. . ++ |.+..+ =+...+-|.+++| +.=.
T Consensus 211 e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~-GlRi 281 (468)
T PLN02450 211 TELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLP-GFRV 281 (468)
T ss_pred HHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCC-CccE
Confidence 356778889999999999999765332211 11 0 10 111111 1356788999999 8633
No 328
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=34.11 E-value=33 Score=26.40 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=34.1
Q ss_pred CCChHHHHHHHHHcCceEEeecccchhhhcCC-CCCCCCccCc-ccc-ccCccccCCCCCC
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGHNLSSLALNS-HSPSPLQPGH-SVS-LPLGTWLNLPLSL 68 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~-~~~~gi~~AD-S~t-~d~HKwL~vP~~~ 68 (98)
.+.+.+|.++|+++++|+=+|-++.-...-.. ......+.-+ -|. -.+.|.+++| +.
T Consensus 141 ~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~-Gl 200 (332)
T PRK06425 141 RDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIP-SL 200 (332)
T ss_pred HHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecHHhcCCc-hh
Confidence 44578888889999999999997543221000 1111111112 233 3678999999 75
No 329
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=33.68 E-value=24 Score=22.95 Aligned_cols=24 Identities=8% Similarity=0.115 Sum_probs=18.8
Q ss_pred ccccCCChHHHHHHHHHcCc--eEEe
Q psy2484 7 LNGHVDNVSLLQEICAKYNL--WLHL 30 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~l--WlHV 30 (98)
-.|.+.+..+|+++|+++|+ |.|.
T Consensus 28 ~~GGit~~~~i~~~A~~~gi~~~~h~ 53 (111)
T PF13378_consen 28 RCGGITEALRIAALAEAHGIPVMPHS 53 (111)
T ss_dssp HHTSHHHHHHHHHHHHHTT-EEEEBS
T ss_pred hcCCHHHHHHHHHHHHHhCCCEEecC
Confidence 35788899999999999986 5555
No 330
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=33.28 E-value=31 Score=29.03 Aligned_cols=56 Identities=20% Similarity=0.351 Sum_probs=33.6
Q ss_pred CCChHHHHHHHHHcCceEEeecccchhhhcCCC---CCCCCc---cCcccccc-CccccCCCCCC
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGHNLSSLALNSH---SPSPLQ---PGHSVSLP-LGTWLNLPLSL 68 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~---~~~gi~---~ADS~t~d-~HKwL~vP~~~ 68 (98)
-|.|++|++||+|||+-+=.|=-- +-+++..+ ....++ .--|||+- +-|.+|++ ++
T Consensus 177 ~eeL~~i~elc~kh~v~VISDEIH-aDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNla-GL 239 (388)
T COG1168 177 KEELRKIAELCLRHGVRVISDEIH-ADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLA-GL 239 (388)
T ss_pred HHHHHHHHHHHHHcCCEEEeeccc-ccccccCCCccchhhcChhhhcceEEEeeccccccch-hh
Confidence 378999999999999997555410 11111211 111111 23466654 59999999 76
No 331
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=32.68 E-value=49 Score=27.45 Aligned_cols=59 Identities=12% Similarity=0.207 Sum_probs=38.1
Q ss_pred ccCCC----hHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccC---CCCCCCeeEE
Q psy2484 9 GHVDN----VSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLN---LPLSLPSPAR 73 (98)
Q Consensus 9 Ga~D~----l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~---vP~~~~~~ll 73 (98)
|.+=| |++|+++|++||+=|=+|=. .|.... -+. ...|+ .+|=+| ..|-|+ +| +++++.
T Consensus 238 G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRt-G~~~a~e~~gv-~PDivt--~gK~lg~G~~P--igavv~ 307 (442)
T TIGR03372 238 GVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRT-GKMFACEHEGV-QPDILC--LAKALGGGVMP--IGATIA 307 (442)
T ss_pred CcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCcc-ccchhhhhcCC-CCCeee--ehhhhcCCccc--ceEEEe
Confidence 44456 99999999999999999984 333221 111 12355 478555 689998 67 444443
No 332
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=32.30 E-value=38 Score=19.25 Aligned_cols=13 Identities=46% Similarity=0.529 Sum_probs=11.6
Q ss_pred CChHHHHHHHHHc
Q psy2484 12 DNVSLLQEICAKY 24 (98)
Q Consensus 12 D~l~~i~~ic~~~ 24 (98)
||...|.++|+++
T Consensus 1 ~p~~~L~e~~~~~ 13 (68)
T cd00048 1 NPKSLLQELAQKR 13 (68)
T ss_pred ChHHHHHHHHHHc
Confidence 6889999999987
No 333
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=31.97 E-value=94 Score=25.92 Aligned_cols=55 Identities=13% Similarity=0.072 Sum_probs=43.1
Q ss_pred ccccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCc-cCccccccCccccCCC
Q psy2484 7 LNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQ-PGHSVSLPLGTWLNLP 65 (98)
Q Consensus 7 ~~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~-~ADS~t~d~HKwL~vP 65 (98)
..|-.-+-.++++||++|++=|=+.+++....+ | +.+.| .||=|.-..||.+-..
T Consensus 168 ~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grm-p---vs~ke~g~DFiVgSGHKsmAAs 223 (382)
T COG1103 168 EYGNLADAKKVAKICREYGVPLLLNCAYTVGRM-P---VSGKEIGADFIVGSGHKSMAAS 223 (382)
T ss_pred CcCCchhhHHHHHHHHHcCCceEeecceeeccc-c---ccccccCCCEEEecCccchhcc
Confidence 467777889999999999999999998755443 2 33333 4899999999998876
No 334
>PRK05839 hypothetical protein; Provisional
Probab=31.93 E-value=35 Score=26.79 Aligned_cols=26 Identities=8% Similarity=0.005 Sum_probs=21.4
Q ss_pred CCChHHHHHHHHHcCceEEeecccch
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGHNLS 36 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga~~~ 36 (98)
.+.+.+|.++|+++|+|+=+|-++.-
T Consensus 174 ~~~l~~i~~~~~~~~~~ii~DE~Y~~ 199 (374)
T PRK05839 174 LEELIEWVKLALKHDFILINDECYSE 199 (374)
T ss_pred HHHHHHHHHHHHHcCCEEEeccchhh
Confidence 34578888899999999999997654
No 335
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=31.92 E-value=48 Score=25.16 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=23.7
Q ss_pred ccccccCCChHHHHHHHHHcCceEEeec
Q psy2484 5 SSLNGHVDNVSLLQEICAKYNLWLHLRG 32 (98)
Q Consensus 5 tt~~Ga~D~l~~i~~ic~~~~lWlHVDg 32 (98)
++.-|..||-.++..+|+++|++|=+..
T Consensus 166 ns~~~~~~~~~~~~~~~~e~G~~~~i~t 193 (237)
T COG1387 166 NSRPGRLDPNSEILRLARELGVKLAIGT 193 (237)
T ss_pred cCCcCccCchHHHHHHHHHhCCeEEeec
Confidence 3456899999999999999999987644
No 336
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=31.87 E-value=29 Score=26.74 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=37.0
Q ss_pred CChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCccCcc--ccccCccccCCCCCCCeeEEecC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHS--VSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~ADS--~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
+.+.+|.++|+++|+|+=+|-++.... +...+..+..-|. +.-.+.|-+++| +.=.-.+.-+
T Consensus 144 ~~l~~l~~~~~~~~~~iI~DE~y~~~~--~~~s~~~~~~~~~vi~~~SfSK~~gl~-GlRiG~~v~~ 207 (330)
T PRK05664 144 ARLLAWHARLAARGGWLVVDEAFMDNT--PQHSLAACAHRPGLIVLRSFGKFFGLA-GARLGFVLAE 207 (330)
T ss_pred HHHHHHHHHHHhcCCEEEEECCcccCC--CcccccccccCCCEEEEeeccccccCC-CcceEEEEeC
Confidence 346777777899999999999764221 2112222222222 345678999999 7644444433
No 337
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=31.52 E-value=50 Score=27.42 Aligned_cols=55 Identities=13% Similarity=0.238 Sum_probs=35.8
Q ss_pred hHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccC---CCCCCCeeEEe
Q psy2484 14 VSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLN---LPLSLPSPART 74 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~---vP~~~~~~ll~ 74 (98)
|++++++|++||+=|-+|=. .|.... -+. ...|+ ..|=+| ..|-|+ +| +++++..
T Consensus 254 l~~lr~lc~~~g~llI~DEV~tG~GRt-G~~~a~e~~gv-~PDivt--~gK~lggG~~P--igav~~~ 315 (459)
T PRK11522 254 LTAVRKLCDEFGALLILDEVQTGMGRT-GKMFACEHENV-QPDILC--LAKALGGGVMP--IGATIAT 315 (459)
T ss_pred HHHHHHHHHHcCCEEEeccceecCCcc-chhhhhhccCC-CCCEEE--echhhhCCCcc--ceeEEEc
Confidence 99999999999999999984 332221 111 12355 478554 489998 67 4444443
No 338
>PRK07480 putative aminotransferase; Validated
Probab=31.16 E-value=46 Score=27.52 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=35.5
Q ss_pred hHHHHHHHHHcCceEEeecc-cchhhhcCCC--CCCCCccCccccccCccccC---CCCCCCeeEE
Q psy2484 14 VSLLQEICAKYNLWLHLRGH-NLSSLALNSH--SPSPLQPGHSVSLPLGTWLN---LPLSLPSPAR 73 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga-~~~al~~~~~--~~~gi~~ADS~t~d~HKwL~---vP~~~~~~ll 73 (98)
+++|+++|++||+=|-+|=. .|....-.-. ...|++ +|=+++ .|-|+ +| +++++.
T Consensus 242 l~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~-PDiv~~--gK~l~gG~~P--i~av~~ 302 (456)
T PRK07480 242 WPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIK-PDLMTI--AKGLTSGYIP--MGAVGV 302 (456)
T ss_pred HHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCC-CCeeee--ehhhccCCcc--ceEEEE
Confidence 99999999999999999984 3443321110 123553 775554 89886 57 344444
No 339
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=31.04 E-value=44 Score=25.15 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=16.6
Q ss_pred ChHHHHHHHHHcCc-eEEeecc
Q psy2484 13 NVSLLQEICAKYNL-WLHLRGH 33 (98)
Q Consensus 13 ~l~~i~~ic~~~~l-WlHVDga 33 (98)
.+.+-.+-+++.|+ |+|+|=-
T Consensus 20 ~l~~~~~~l~~~~~~~~H~Dim 41 (228)
T PTZ00170 20 KLADEAQDVLSGGADWLHVDVM 41 (228)
T ss_pred HHHHHHHHHHHcCCCEEEEecc
Confidence 56677777888888 9999974
No 340
>PF05954 Phage_GPD: Phage late control gene D protein (GPD); PDB: 2P5Z_X 3D37_A 1WRU_A 3CDD_E.
Probab=30.83 E-value=49 Score=24.37 Aligned_cols=21 Identities=14% Similarity=0.485 Sum_probs=18.0
Q ss_pred CChHHHHHHHHHcCceEEeec
Q psy2484 12 DNVSLLQEICAKYNLWLHLRG 32 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDg 32 (98)
.++.=|..+|+++|+|+.+++
T Consensus 123 SD~~Fl~Rla~~~G~~~~~~~ 143 (292)
T PF05954_consen 123 SDWDFLQRLAEREGIWFYFDH 143 (292)
T ss_dssp BHHHHHHHHHHHTT-EEEEEC
T ss_pred hHHHHHHHHHHhcCcEEEEec
Confidence 467889999999999999988
No 341
>KOG0053|consensus
Probab=30.62 E-value=72 Score=27.00 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=37.9
Q ss_pred cccCCChHHHHHHHHHcCceEEeecccchhhhcCCCCCCCCcc-CccccccCccccCC
Q psy2484 8 NGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQP-GHSVSLPLGTWLNL 64 (98)
Q Consensus 8 ~Ga~D~l~~i~~ic~~~~lWlHVDga~~~al~~~~~~~~gi~~-ADS~t~d~HKwL~v 64 (98)
+..+=+|.+|+++|+++|+-+=||.-.++-.... .+.. ||=+.=..=||++=
T Consensus 175 ll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~-----pL~lGADIV~hSaTKyi~G 227 (409)
T KOG0053|consen 175 LLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQD-----PLPLGADIVVHSATKYIGG 227 (409)
T ss_pred ccccccHHHHHHHHhhCCCEEEEeCCcCcccccC-----hhhcCCCEEEEeeeeeecC
Confidence 4556689999999999999999999655543332 3333 77777777777764
No 342
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=29.57 E-value=51 Score=27.42 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHcCceEEeecc-cchhhhcCCC--CCCCCccCccccccCccccC
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGH-NLSSLALNSH--SPSPLQPGHSVSLPLGTWLN 63 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~--~~~gi~~ADS~t~d~HKwL~ 63 (98)
+=+++|+++|++||+=|-+|=. .|..+.-.-. ...|++ +|=+++ .|.|+
T Consensus 236 ~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~-PDiv~~--gKgl~ 287 (466)
T PRK07030 236 VYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIR-PDFLCL--SKALT 287 (466)
T ss_pred HHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCC-CCEEee--ehhcc
Confidence 4489999999999999999984 3333211100 123664 888887 78877
No 343
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=29.19 E-value=35 Score=19.47 Aligned_cols=14 Identities=29% Similarity=0.460 Sum_probs=10.4
Q ss_pred ChHHHHHHHHHcCc
Q psy2484 13 NVSLLQEICAKYNL 26 (98)
Q Consensus 13 ~l~~i~~ic~~~~l 26 (98)
++.+|.++|+++|+
T Consensus 6 ~~~eL~~iAk~lgI 19 (43)
T PF07498_consen 6 TLSELREIAKELGI 19 (43)
T ss_dssp -HHHHHHHHHCTT-
T ss_pred CHHHHHHHHHHcCC
Confidence 57889999998876
No 344
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=28.02 E-value=52 Score=26.81 Aligned_cols=23 Identities=9% Similarity=0.241 Sum_probs=21.2
Q ss_pred CCChHHHHHHHHHcCceEEeecc
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGH 33 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga 33 (98)
-+.+++|+++|++||+=|=+|-.
T Consensus 238 ~~~l~~l~~lc~~~g~llI~DEV 260 (431)
T TIGR03251 238 PEFLRAMRALCDEHDALLIFDEV 260 (431)
T ss_pred HHHHHHHHHHHHHcCCEEEEecc
Confidence 47899999999999999999994
No 345
>PRK07481 hypothetical protein; Provisional
Probab=27.85 E-value=58 Score=26.81 Aligned_cols=56 Identities=13% Similarity=0.113 Sum_probs=36.1
Q ss_pred hHHHHHHHHHcCceEEeecc-cchhhhcCC--CCCCCCccCccccccCccccC---CCCCCCeeEEe
Q psy2484 14 VSLLQEICAKYNLWLHLRGH-NLSSLALNS--HSPSPLQPGHSVSLPLGTWLN---LPLSLPSPART 74 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga-~~~al~~~~--~~~~gi~~ADS~t~d~HKwL~---vP~~~~~~ll~ 74 (98)
+++|+++|++||+-|=+|=. .|..+.-.- ....|++ +|=+++ .|.|+ +| +++++..
T Consensus 236 l~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~-PDiv~~--gKgl~gG~~P--i~av~~~ 297 (449)
T PRK07481 236 WPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVK-PDIMCL--AKGITSGYVP--LGATMVN 297 (449)
T ss_pred HHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCC-CCEEEE--eecccCCCcC--ceEEEEc
Confidence 89999999999999999984 333321100 0123553 787666 89886 57 3444443
No 346
>PRK06917 hypothetical protein; Provisional
Probab=27.76 E-value=58 Score=26.82 Aligned_cols=50 Identities=14% Similarity=0.166 Sum_probs=32.5
Q ss_pred CCChHHHHHHHHHcCceEEeecc-cchhhhcCCC--CCCCCccCccccccCccccC
Q psy2484 11 VDNVSLLQEICAKYNLWLHLRGH-NLSSLALNSH--SPSPLQPGHSVSLPLGTWLN 63 (98)
Q Consensus 11 ~D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~--~~~gi~~ADS~t~d~HKwL~ 63 (98)
-+=+++|+++|++||+-|=+|=. .|....-.-. ...|++ .|=+++ .|.|+
T Consensus 220 ~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~-PDi~~~--gK~l~ 272 (447)
T PRK06917 220 KGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVE-PDIMTL--GKGLG 272 (447)
T ss_pred HHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCC-CCEEEe--eehhc
Confidence 34488999999999999999984 3333211110 123553 775554 89987
No 347
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=26.41 E-value=63 Score=26.77 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=32.0
Q ss_pred hHHHHHHHHHcCceEEeecc-cchhhhcCCC--CCCCCccCccccccCcccc--CCCC
Q psy2484 14 VSLLQEICAKYNLWLHLRGH-NLSSLALNSH--SPSPLQPGHSVSLPLGTWL--NLPL 66 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga-~~~al~~~~~--~~~gi~~ADS~t~d~HKwL--~vP~ 66 (98)
|++|+++|++||+-|=+|=. .|..+.-.-. ...|+ .+|=+|+ .|-| |+|+
T Consensus 248 l~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv-~PDivt~--gK~l~gG~Pi 302 (459)
T PRK06931 248 LQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGI-EPDIIVM--SKAVGGGLPL 302 (459)
T ss_pred HHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCC-CCCEEEe--cccccCCcce
Confidence 89999999999999999984 3332211000 12355 3777666 6766 4663
No 348
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=25.25 E-value=55 Score=18.66 Aligned_cols=14 Identities=50% Similarity=0.543 Sum_probs=11.6
Q ss_pred ChHHHHHHHHHcCc
Q psy2484 13 NVSLLQEICAKYNL 26 (98)
Q Consensus 13 ~l~~i~~ic~~~~l 26 (98)
|...|.++|+++++
T Consensus 1 p~~~L~e~~~~~~~ 14 (67)
T smart00358 1 PKSLLQELAQKRGL 14 (67)
T ss_pred CchHHHHHHHHCCC
Confidence 67889999998874
No 349
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=25.07 E-value=50 Score=21.96 Aligned_cols=15 Identities=20% Similarity=0.658 Sum_probs=13.5
Q ss_pred ChHHHHHHHHHcCce
Q psy2484 13 NVSLLQEICAKYNLW 27 (98)
Q Consensus 13 ~l~~i~~ic~~~~lW 27 (98)
+++.+.++|+++++|
T Consensus 71 d~~~~~~~c~~~~l~ 85 (140)
T smart00299 71 DIEKVGKLCEKAKLY 85 (140)
T ss_pred CHHHHHHHHHHcCcH
Confidence 678899999999998
No 350
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=24.50 E-value=72 Score=26.52 Aligned_cols=55 Identities=15% Similarity=0.014 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCccCccccccCccccC--CCCCCCeeEE
Q psy2484 13 NVSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQPGHSVSLPLGTWLN--LPLSLPSPAR 73 (98)
Q Consensus 13 ~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~~ADS~t~d~HKwL~--vP~~~~~~ll 73 (98)
=+++|+++|++||+=|=+|=. .|..+.- +. ..-|+ .+|=+++ .|.|+ +| +++++.
T Consensus 253 yl~~lr~lc~~~giLlI~DEV~tGfGRtG-~~~a~e~~gv-~PDiv~~--gKglggG~P--lsAv~~ 313 (464)
T PRK06938 253 WLRGLRRITEEAGIPLIVDEIQSGFGRTG-KMFAFEHAGI-IPDVVVL--SKAIGGSLP--LAVVVY 313 (464)
T ss_pred HHHHHHHHHHHcCCEEEEeccccCCCcCc-HHHHHHhcCC-CCCEEEe--eccccCCCc--eEEEee
Confidence 378999999999999999984 3332211 11 12355 3787777 67776 56 444443
No 351
>PRK07678 aminotransferase; Validated
Probab=23.82 E-value=75 Score=26.16 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=36.5
Q ss_pred hHHHHHHHHHcCceEEeecc-cchhhhcCC--CCCCCCccCccccccCccccC---CCCCCCeeEEe
Q psy2484 14 VSLLQEICAKYNLWLHLRGH-NLSSLALNS--HSPSPLQPGHSVSLPLGTWLN---LPLSLPSPART 74 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga-~~~al~~~~--~~~~gi~~ADS~t~d~HKwL~---vP~~~~~~ll~ 74 (98)
+++|+++|++||+=|=+|=. .|..+.-.- ....|+ .+|=+++ .|-|+ +| +++++..
T Consensus 236 l~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv-~PDivt~--gK~lggG~~P--i~av~~~ 297 (451)
T PRK07678 236 MKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGV-KPDIITM--AKGITSAYLP--LSATAVK 297 (451)
T ss_pred HHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCC-CCCEEEe--ecccccCCcc--eeEEEEc
Confidence 89999999999999999984 344331100 012466 4886665 79886 57 4444443
No 352
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=23.31 E-value=58 Score=24.21 Aligned_cols=15 Identities=20% Similarity=0.638 Sum_probs=12.7
Q ss_pred ChHHHHHHHHHcCce
Q psy2484 13 NVSLLQEICAKYNLW 27 (98)
Q Consensus 13 ~l~~i~~ic~~~~lW 27 (98)
++.-+..+|++||+|
T Consensus 54 Didq~i~lC~~~~Ly 68 (196)
T PF12816_consen 54 DIDQVIKLCKKHGLY 68 (196)
T ss_pred CHHHHHHHHHHCCCC
Confidence 467788999999987
No 353
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=23.11 E-value=77 Score=26.82 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=18.8
Q ss_pred CChHHHHHHHHHcCceEEeec
Q psy2484 12 DNVSLLQEICAKYNLWLHLRG 32 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDg 32 (98)
+=|++++++|++||+-|=+|=
T Consensus 205 ~fl~~lr~lCd~~g~LLI~DE 225 (404)
T COG4992 205 EFLKALRELCDEHGALLILDE 225 (404)
T ss_pred HHHHHHHHHHHHhCeEEEEec
Confidence 347899999999999999997
No 354
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=22.80 E-value=1.1e+02 Score=23.96 Aligned_cols=62 Identities=8% Similarity=-0.103 Sum_probs=36.6
Q ss_pred cccccCCChHHHHHHHHH--cCceEEeecccchhhhcCCCCCCCCccCcc--ccccCccccCCCCCCC
Q psy2484 6 SLNGHVDNVSLLQEICAK--YNLWLHLRGHNLSSLALNSHSPSPLQPGHS--VSLPLGTWLNLPLSLP 69 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~--~~lWlHVDga~~~al~~~~~~~~gi~~ADS--~t~d~HKwL~vP~~~~ 69 (98)
..||.+=+.+++.++++. ++.|+.+|.++.-.. ..+....-++..|. +.-.+-|-+++| +.=
T Consensus 163 NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~-~~~~~~~~~~~~~~vi~~~SfSK~~gl~-GlR 228 (364)
T PRK04781 163 NPAGSAIALDQIERALQALQGKALVVVDEAYGEFS-DVPSAVGLLARYDNLAVLRTLSKAHALA-AAR 228 (364)
T ss_pred CCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhc-CCcchHHHHhhCCCEEEEecChhhcccc-cce
Confidence 457777788888887764 589999999865321 11110111111121 234677999988 753
No 355
>PF02757 YLP: YLP motif; InterPro: IPR004019 The YLP motif is found in one or several copies in various Drosophila proteins. Its function is unknown, however the presence of completely conserved tyrosine residues and its presence in the human Erbb-2 and ErbB-4 receptor protein-tyrosine kinases (2.7.10.1 from EC) may suggest it could be a substrate for tyrosine kinases. ErbBs (1-4) are single-pass transmembrane proteins that activate a wide variety of signalling pathways, including those involved in proliferation, migration, differentiation, survival, and apoptosis; they are frequently misregulated in cancer []. ErbB-2 is an essential component of a neuregulin-receptor complex, although neuregulins do not interact with it alone. ErbB-4 specifically binds and is activated by neuregulins, NRG-2, NRG-3, heparin-binding EGF-like growth factor, betacellulin and NTAK [].
Probab=22.25 E-value=48 Score=13.73 Aligned_cols=6 Identities=50% Similarity=0.955 Sum_probs=4.3
Q ss_pred CCCCCC
Q psy2484 85 QPALPP 90 (98)
Q Consensus 85 ~~~~~~ 90 (98)
+++|||
T Consensus 2 ~eYLpP 7 (9)
T PF02757_consen 2 NEYLPP 7 (9)
T ss_pred ccccCC
Confidence 567886
No 356
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=22.20 E-value=1.2e+02 Score=22.95 Aligned_cols=32 Identities=6% Similarity=-0.136 Sum_probs=27.7
Q ss_pred CcccccccCCChHHHHHHHHHcCceEEeeccc
Q psy2484 3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRGHN 34 (98)
Q Consensus 3 aGtt~~Ga~D~l~~i~~ic~~~~lWlHVDga~ 34 (98)
=|.-+.|.++|...-+++++++|+-+|.=|.|
T Consensus 120 DG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG 151 (191)
T cd01455 120 DANLERYGIQPKKLADALAREPNVNAFVIFIG 151 (191)
T ss_pred CCCcCCCCCChHHHHHHHHHhCCCEEEEEEec
Confidence 36667888999998889999999999998865
No 357
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=21.98 E-value=47 Score=26.27 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=18.6
Q ss_pred cCCChHHHHHHHHHcCceEEeecccc
Q psy2484 10 HVDNVSLLQEICAKYNLWLHLRGHNL 35 (98)
Q Consensus 10 a~D~l~~i~~ic~~~~lWlHVDga~~ 35 (98)
..|.+..+++-|.++|+|| .=.||
T Consensus 162 ~leE~~avA~aca~~g~~l--EPTGG 185 (236)
T TIGR03581 162 HLEEYAAVAKACAKHGFYL--EPTGG 185 (236)
T ss_pred cHHHHHHHHHHHHHcCCcc--CCCCC
Confidence 4578888899999999997 44443
No 358
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=21.96 E-value=1e+02 Score=25.92 Aligned_cols=47 Identities=15% Similarity=0.125 Sum_probs=32.4
Q ss_pred hHHHHHHHHHcCceEEeecc-cchhhhcCCC---CCCCCc-cCccccccCccccC
Q psy2484 14 VSLLQEICAKYNLWLHLRGH-NLSSLALNSH---SPSPLQ-PGHSVSLPLGTWLN 63 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga-~~~al~~~~~---~~~gi~-~ADS~t~d~HKwL~ 63 (98)
|++|+++|++||+-|=+|=. .|.... -.. ...|++ ++|=+|+ .|.|+
T Consensus 274 l~~lr~lc~~~g~lLI~DEV~tGfGrt-G~~fa~e~~gv~~~PDi~t~--gK~lg 325 (464)
T TIGR00699 274 FRKLRDITKKHNVAFIVDEVQTGVGAT-GKFWAHEHWNLDDPPDMVTF--SKKFQ 325 (464)
T ss_pred HHHHHHHHHHcCCEEEEeeeeeCCCCC-cchhHHHhcCCCCCCCEEEe--hhhhc
Confidence 99999999999999999984 333221 111 123665 7887665 78884
No 359
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=21.91 E-value=83 Score=17.09 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=10.6
Q ss_pred hHHHHHHHHHcCc
Q psy2484 14 VSLLQEICAKYNL 26 (98)
Q Consensus 14 l~~i~~ic~~~~l 26 (98)
..+|.++|+++|+
T Consensus 6 v~eLk~~l~~~gL 18 (35)
T PF02037_consen 6 VAELKEELKERGL 18 (35)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCC
Confidence 4688899998886
No 360
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.85 E-value=1e+02 Score=22.69 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.0
Q ss_pred cccCCChHHHHHHHHHcCceEEeec
Q psy2484 8 NGHVDNVSLLQEICAKYNLWLHLRG 32 (98)
Q Consensus 8 ~Ga~D~l~~i~~ic~~~~lWlHVDg 32 (98)
.+..+++..|.++|+++++.+-|+|
T Consensus 59 ~~~~~~~~~i~~i~~~~~~~l~v~G 83 (241)
T PRK13585 59 EGERKNAEAIEKIIEAVGVPVQLGG 83 (241)
T ss_pred cCCcccHHHHHHHHHHcCCcEEEcC
Confidence 4667788999999999998888865
No 361
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=21.73 E-value=94 Score=24.42 Aligned_cols=61 Identities=13% Similarity=0.104 Sum_probs=37.2
Q ss_pred CChHHHHHHHHHcCceEEeecc-cchhhhcCCC--CCCCCccCccccccCccccCCCCCCCeeEEec
Q psy2484 12 DNVSLLQEICAKYNLWLHLRGH-NLSSLALNSH--SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQ 75 (98)
Q Consensus 12 D~l~~i~~ic~~~~lWlHVDga-~~~al~~~~~--~~~gi~~ADS~t~d~HKwL~vP~~~~~~ll~r 75 (98)
+=+++|+++|++||+=|=+|=. .|..+.-+-. ...|++ +|=+++ .|.|+--+-.++++..+
T Consensus 198 ~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~-PDiv~~--gK~l~gG~p~sav~~~~ 261 (339)
T PF00202_consen 198 EYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVD-PDIVTF--GKGLGGGLPISAVLGSE 261 (339)
T ss_dssp THHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSS-SSEEEE--EGGGGTTSSEEEEEEEH
T ss_pred chhhehcccccccccceecccccccccccCCccceeccccc-Cccccc--ccchhhhhhcccccccc
Confidence 3479999999999999999984 3333322111 123543 688887 48886543344444444
No 362
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=21.68 E-value=82 Score=28.62 Aligned_cols=56 Identities=11% Similarity=0.019 Sum_probs=35.0
Q ss_pred hHHHHHHHHHcCceEEeecc-cchhhhcCCC--CCCCCccCccccccCccccC---CCCCCCeeEEe
Q psy2484 14 VSLLQEICAKYNLWLHLRGH-NLSSLALNSH--SPSPLQPGHSVSLPLGTWLN---LPLSLPSPART 74 (98)
Q Consensus 14 l~~i~~ic~~~~lWlHVDga-~~~al~~~~~--~~~gi~~ADS~t~d~HKwL~---vP~~~~~~ll~ 74 (98)
+++|+++|++||+=|-+|=. .|+.+.=.-. ..-|+. .|=+++ .|.|+ +| +++++..
T Consensus 608 l~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~-PDIi~~--gKgLtgG~~P--laa~l~~ 669 (817)
T PLN02974 608 QRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCK-PDIACY--AKLLTGGLVP--LAATLAT 669 (817)
T ss_pred HHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCC-CCEEee--cccccCCCCc--cEEEEEc
Confidence 78999999999999999984 4443321111 123443 676654 57765 56 3444443
No 363
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=21.61 E-value=1.2e+02 Score=22.51 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=15.1
Q ss_pred hHHHHHHHHHcCceE--Eeec
Q psy2484 14 VSLLQEICAKYNLWL--HLRG 32 (98)
Q Consensus 14 l~~i~~ic~~~~lWl--HVDg 32 (98)
++++.++++++|+.+ |++.
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e 147 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASE 147 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCC
Confidence 999999999998554 5554
No 364
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=21.59 E-value=1.1e+02 Score=23.78 Aligned_cols=65 Identities=9% Similarity=-0.028 Sum_probs=37.8
Q ss_pred cccccCCChHHHHHHHHH--cCceEEeecccchhhhcCCCC---CCCCc-cCc-cc-cccCccccCCCCCCCeeE
Q psy2484 6 SLNGHVDNVSLLQEICAK--YNLWLHLRGHNLSSLALNSHS---PSPLQ-PGH-SV-SLPLGTWLNLPLSLPSPA 72 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~--~~lWlHVDga~~~al~~~~~~---~~gi~-~AD-S~-t~d~HKwL~vP~~~~~~l 72 (98)
..||.+=+.+++.+|++. .+.|+-+|.++.-.. ..... ...+. .-+ .| .-.+-|.+++| +.-.-.
T Consensus 170 NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~-GlRiG~ 242 (371)
T PRK05166 170 NPVGSWLTADQLARVLDATPPETLIVVDEAYAEYA-AGDDYPSALTLLKARGLPWIVLRTFSKAYGLA-GLRVGY 242 (371)
T ss_pred CCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhc-CCcCcccHHHHHhhcCCCEEEEeechHhhhcc-hhheee
Confidence 347877777777776663 489999999865333 11111 11111 111 22 34688999999 764333
No 365
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=21.11 E-value=70 Score=24.65 Aligned_cols=24 Identities=8% Similarity=0.140 Sum_probs=20.9
Q ss_pred cccccCCChHHHHHHHHHcCc--eEE
Q psy2484 6 SLNGHVDNVSLLQEICAKYNL--WLH 29 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~l--WlH 29 (98)
+..|.+.+..+++++|+++|+ |+|
T Consensus 260 ~~~GGi~~~~~~~~~a~~~gi~~~~~ 285 (316)
T cd03319 260 MKTGGLTEALRIADLARAAGLKVMVG 285 (316)
T ss_pred cccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 456888999999999999988 886
No 366
>KOG1402|consensus
Probab=20.81 E-value=78 Score=26.89 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=18.4
Q ss_pred ChHHHHHHHHHcCceEEeec
Q psy2484 13 NVSLLQEICAKYNLWLHLRG 32 (98)
Q Consensus 13 ~l~~i~~ic~~~~lWlHVDg 32 (98)
=|.+.+++|.|||.-|=+|-
T Consensus 229 YL~~vreLCtkynvl~I~DE 248 (427)
T KOG1402|consen 229 YLKKVRELCTKYNVLLIADE 248 (427)
T ss_pred hHHHHHHHHHhhcEEEEehh
Confidence 37899999999999999997
No 367
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=20.75 E-value=73 Score=23.05 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=24.5
Q ss_pred cccccCCChHHHHHHHHHcCceEEeec
Q psy2484 6 SLNGHVDNVSLLQEICAKYNLWLHLRG 32 (98)
Q Consensus 6 t~~Ga~D~l~~i~~ic~~~~lWlHVDg 32 (98)
+..|..++++++.+.|+++||-+=+|-
T Consensus 46 ~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 46 PRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp TTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cccchhhhhhhhhhccccccceEEEee
Confidence 456888999999999999999999998
No 368
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=20.69 E-value=1.1e+02 Score=20.87 Aligned_cols=23 Identities=13% Similarity=0.227 Sum_probs=17.9
Q ss_pred cCCChHHHHHHHHHcCceEEeec
Q psy2484 10 HVDNVSLLQEICAKYNLWLHLRG 32 (98)
Q Consensus 10 a~D~l~~i~~ic~~~~lWlHVDg 32 (98)
..++..+|.++|+++++=|=|=|
T Consensus 47 ~~~d~~~l~~~a~~~~idlvvvG 69 (100)
T PF02844_consen 47 DITDPEELADFAKENKIDLVVVG 69 (100)
T ss_dssp -TT-HHHHHHHHHHTTESEEEES
T ss_pred CCCCHHHHHHHHHHcCCCEEEEC
Confidence 57889999999999998776665
No 369
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=20.26 E-value=1.1e+02 Score=24.30 Aligned_cols=65 Identities=14% Similarity=0.107 Sum_probs=37.1
Q ss_pred cccCCCh---HHHHHHHHHc-CceEEeecccchhhhcCCC-C-CCCCccCcc-ccccCccccCCCCCCCeeEEecC
Q psy2484 8 NGHVDNV---SLLQEICAKY-NLWLHLRGHNLSSLALNSH-S-PSPLQPGHS-VSLPLGTWLNLPLSLPSPARTQR 76 (98)
Q Consensus 8 ~Ga~D~l---~~i~~ic~~~-~lWlHVDga~~~al~~~~~-~-~~gi~~ADS-~t~d~HKwL~vP~~~~~~ll~r~ 76 (98)
||.+=+. ++|.++|+++ ++|+=+|-++.-.. ..+. . +... .-.. +.-.+.|-++ | +.=.-++.-+
T Consensus 225 TG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~-~~~~~~~~~~~-~~~vi~~~SfSK~~~-~-GlRiG~~i~~ 296 (431)
T PRK15481 225 TGCSLSARRAAALRNLLARYPQVLVIIDDHFALLS-SSPYHSVIPQT-TQRWALIRSVSKALG-P-DLRLAFVASD 296 (431)
T ss_pred CCccCCHHHHHHHHHHHHhcCCceEEecCchhhhc-cCCCCCCCcCC-CCCEEEEeeeccccC-C-CceeEEEeCC
Confidence 4555455 4999999999 99999999764332 1111 1 1111 0011 2345678888 8 7644344433
Done!