RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2484
(98 letters)
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 373
Score = 37.0 bits (86), Expect = 5e-04
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 4 GSSLNGHVDNVSLLQEICAKYNLWLH 29
G++ +G D + L +IC KY+LWLH
Sbjct: 203 GTTGSGAFDPLQELGDICNKYDLWLH 228
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine.
Length = 345
Score = 31.8 bits (73), Expect = 0.028
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 9 GHVDNVSLLQEICAKYNLWLH 29
G +D + + ++ KY+LWLH
Sbjct: 162 GAIDPLEEIADLAEKYDLWLH 182
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 31.6 bits (72), Expect = 0.039
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 9 GHVDNVSLLQEICAKYNLWLH 29
G +D++ L +I +Y +WLH
Sbjct: 221 GSIDDIEELADIAEEYGIWLH 241
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 30.8 bits (69), Expect = 0.085
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 2 EIGSSLNGHVDNVSLL-------QEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSV 54
EI + +N V +E AK +L L H L S + G S+
Sbjct: 556 EINNFINHFHPTVKTYANAYVTGEEQIAKPDLGLFTLSHFLDRFVYRSAKQTNTARGTSI 615
Query: 55 SLPLGTWLN 63
PL + +N
Sbjct: 616 MQPLFSGVN 624
>gnl|CDD|221281 pfam11871, DUF3391, Domain of unknown function (DUF3391). This
domain is functionally uncharacterized. This domain is
found in bacteria. This presumed domain is typically
between 122 to 139 amino acids in length. This domain
is found associated with pfam01966.
Length = 127
Score = 26.9 bits (60), Expect = 1.2
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 48 LQPGHSVSLPLGTWLNLP 65
LQ G VSL +WL P
Sbjct: 10 LQVGMYVSLLDRSWLEHP 27
>gnl|CDD|237960 PRK15407, PRK15407, lipopolysaccharide biosynthesis protein RfbH;
Provisional.
Length = 438
Score = 26.8 bits (60), Expect = 1.8
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 13 NVSLLQEICAKYNLWL 28
+++ ++ C K+NLWL
Sbjct: 174 DLAAVKAFCDKHNLWL 189
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 26.7 bits (59), Expect = 2.5
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 44 SPSPLQPGHSVSLPLGTWLNLPLSLPSPARTQRVPPSGYLAQPALPP 90
+PSP++P + S + P + P +P PP
Sbjct: 375 APSPVRPTPAPSTRPKAAAAANIP-PKEPVRETATPPPVPPRPVAPP 420
>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 26.0 bits (58), Expect = 3.1
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 9 GHVDNVSLLQEICAKYNLWLH 29
G VD + L +I + ++LH
Sbjct: 165 GQVDPIPELSKIALENGIFLH 185
>gnl|CDD|148271 pfam06566, Chon_Sulph_att, Chondroitin sulphate attachment domain.
This family represents the chondroitin sulphate
attachment domain of vertebrate neural transmembrane
proteoglycans that contain EGF modules. Evidence has
been accumulated to support the idea that neural
proteoglycans are involved in various cellular events
including mitogenesis, differentiation, axonal outgrowth
and synaptogenesis. This domain contains several
potential sites of chondroitin sulphate attachment, as
well as potential sites of N-linked glycosylation.
Length = 253
Score = 25.7 bits (56), Expect = 4.4
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 36 SSLALNSHSPSP-----LQPGHSVSLPLGTWLNLPLSLPSPARTQRVPPSGYLAQPALPP 90
++ A N SP P L P P+ WLNL S P PA + P+ +P
Sbjct: 122 ATEASNPPSPGPGDKPSLLPELPKESPVEVWLNLGGSTPDPAAPEPTSPAQGTLEPQPAS 181
Query: 91 N 91
+
Sbjct: 182 D 182
>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase.
Length = 558
Score = 25.6 bits (56), Expect = 5.2
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 42 SHSPSPLQPGHSVSLPLGT-WLNLPLSLPSPARTQRVPPSGYLAQPALPPNCYPLH 96
+ + P + S L T + LPL LP P+ + L H
Sbjct: 1 AAATLPSTSKLTSSPSLQTLYRKLPLRLPLPSSSSSSHLPLPKTLTRLSSPRPLSH 56
>gnl|CDD|178323 PLN02721, PLN02721, threonine aldolase.
Length = 353
Score = 25.4 bits (56), Expect = 5.5
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 10 HVDNVSLLQEICAKYNLWLHLRGHNL--SSLALNSHSPSPLQPGHSVSLPLGTWLNLPL 66
+ D V E+ ++ L LH+ G + +S+AL ++ SVS+ L L P+
Sbjct: 159 YTDKVG---ELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPV 214
>gnl|CDD|216261 pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase
family. The members of this family are probably all
pyridoxal-phosphate-dependent aminotransferase enzymes
with a variety of molecular functions. The family
includes StsA, StsC and StsS. The aminotransferase
activity was demonstrated for purified StsC protein as
the L-glutamine:scyllo-inosose aminotransferase
EC:2.6.1.50, which catalyzes the first amino transfer in
the biosynthesis of the streptidine subunit of
streptomycin.
Length = 362
Score = 24.9 bits (55), Expect = 7.9
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 7 LNGHVDNVSLLQEICAKYNLWL 28
L G ++ ++ I A++ L +
Sbjct: 121 LYGQPADMDAIRAIAAEHGLPV 142
>gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional.
Length = 380
Score = 25.0 bits (55), Expect = 8.0
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 3 IGSSLNGHVDNVSLLQEICAKYNL---WLHLRG 32
IG+++ G +DN+ +QEI K + ++H
Sbjct: 168 IGTTMTGAIDNIKEIQEILKKIGIDDYYIHADA 200
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 24.9 bits (54), Expect = 9.8
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 44 SPSPLQPGHSVSLPLGTWLNLPLSLPSPAR--TQRVPPSGYLAQPALPPNCYPLHQ 97
P L G SV+ P G P S A+ PP LA+PA+ +
Sbjct: 2846 PPPSLPLGGSVA-PGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFAL 2900
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.433
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,942,920
Number of extensions: 385551
Number of successful extensions: 445
Number of sequences better than 10.0: 1
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 33
Length of query: 98
Length of database: 10,937,602
Length adjustment: 64
Effective length of query: 34
Effective length of database: 8,098,946
Effective search space: 275364164
Effective search space used: 275364164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)