RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2484
(98 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 1e-04
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 19/89 (21%)
Query: 17 LQEICAKYNL----WLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLPSPA 72
L+++ Y++ + LS L + + + L + WL P +
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV---FTQGLNILEWLENPSN----- 224
Query: 73 RTQRVPPSGYLAQPA--LPPNC-YPLHQY 98
P YL P L Y
Sbjct: 225 ----TPDKDYLLSIPISCPLIGVIQLAHY 249
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 34.2 bits (79), Expect = 0.003
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 3 IGSSLNGHVDNVSLLQEICAKYNLWLH 29
G++ G +DN+ L +I + N+++H
Sbjct: 179 AGTTELGTIDNIEELSKIAKENNIYIH 205
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 33.9 bits (78), Expect = 0.004
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 9 GHVDNVSLLQEICAKYNLWLH 29
G D + + +IC KYNLWLH
Sbjct: 259 GAFDPIQEIADICEKYNLWLH 279
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 33.9 bits (78), Expect = 0.004
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRG 32
+G++ D +S L ICA+ LWLH+
Sbjct: 249 LGTTGVCAFDCLSELGPICAREGLWLHIDA 278
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 33.5 bits (77), Expect = 0.006
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 9 GHVDNVSLLQEICAKYNLWLH 29
G D + + ++C ++ LWLH
Sbjct: 273 GAFDPLEAIADVCQRHGLWLH 293
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 33.2 bits (76), Expect = 0.006
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRG 32
+G++ DN+ + IC + ++WLH+
Sbjct: 243 LGTTSCCSFDNLLEVGPICHEEDIWLHVDA 272
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 33.1 bits (76), Expect = 0.007
Identities = 5/21 (23%), Positives = 15/21 (71%)
Query: 9 GHVDNVSLLQEICAKYNLWLH 29
G +D++ + ++ K+++W+H
Sbjct: 272 GAIDDLDFIADMAVKHDMWMH 292
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 33.2 bits (76), Expect = 0.007
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 3 IGSSLNGHVDNVSLLQEICAKYNLWLHLRG 32
+G++ + D + + K+NLW+H+
Sbjct: 242 LGTTNSCAFDYLDECGPVGNKHNLWIHVDA 271
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 31.6 bits (71), Expect = 0.023
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 9 GHVDNVSLLQEICAKYNLWLHLRG 32
+ D++ + +IC Y++ + G
Sbjct: 245 RNSDDIVEIAKICENYDIPHIING 268
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 29.5 bits (66), Expect = 0.14
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 4 GSSLNGHVDNVSLLQEICAKYNLWLHL 30
+G VD + + + A++ + H+
Sbjct: 248 PGYPHGVVDPIPEIAALAAEHGIGCHV 274
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 28.7 bits (64), Expect = 0.26
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 4 GSSLNGHVDNVSLLQEICAKYNLWLH 29
+ +G D++ L +I KY L LH
Sbjct: 215 PNFPHGIADDIEGLGKIAQKYKLPLH 240
>2bsy_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; dutpase,
monomer, nucleotide metabolism, structural proteomics
in europe, spine; HET: UMP; 1.5A {Human herpesvirus 4}
SCOP: b.85.4.1 b.85.4.1 PDB: 2bt1_A* 2we1_A* 2we0_A*
2we2_A* 2we3_A*
Length = 278
Score = 27.0 bits (59), Expect = 1.0
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 28 LHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLP 65
L L+ ++ L L + + L+P + ++ LG + P
Sbjct: 16 LLLQQASVGRLTLVNKTTILLRPMKTTTVDLGLYARPP 53
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 26.7 bits (58), Expect = 1.2
Identities = 5/45 (11%), Positives = 17/45 (37%)
Query: 11 VDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVS 55
+ N+ + EI ++ +++ + A + P ++
Sbjct: 203 MSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIK 247
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate
aminotransferase, colitose, perosamine, O-antigen,
pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli}
PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Length = 390
Score = 26.4 bits (59), Expect = 1.6
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 9 GHVDNVSLLQEICAKYNLWL 28
G+ +N + +I ++ L
Sbjct: 139 GNPNNFDEINKIIGGRDIIL 158
>2dix_A Interferon-inducible double stranded RNA- dependent protein
kinase activator A; structure genomics, DSRM domain,
hypothetical protein PRKRA; NMR {Homo sapiens} SCOP:
d.50.1.1
Length = 84
Score = 25.4 bits (56), Expect = 2.2
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 4 GSSLNGHVDNVSLLQEICAKYNL 26
GSS + + +L E K
Sbjct: 1 GSSGSSGKTPIQVLHEYGMKTKN 23
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate
aminotransferase fold, oxidoreductase; HET: PLP; 2.35A
{Yersinia pseudotuberculosis} PDB: 3bcx_A
Length = 437
Score = 26.1 bits (58), Expect = 2.3
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 9 GHVDNVSLLQEICAKYNLWL 28
G++ +++ ++ + KYNLWL
Sbjct: 169 GNLFDLAEVRRVADKYNLWL 188
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.433
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,457,069
Number of extensions: 68364
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 28
Length of query: 98
Length of database: 6,701,793
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,914,849
Effective search space: 167104866
Effective search space used: 167104866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.5 bits)