RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2484
         (98 letters)



>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
           {Proteus vulgaris [TaxId: 585]}
          Length = 465

 Score = 27.2 bits (59), Expect = 0.33
 Identities = 9/76 (11%), Positives = 26/76 (34%), Gaps = 1/76 (1%)

Query: 10  HVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLP 69
            + N+  + EI  ++ +++ +        A    +  P     ++   +        +L 
Sbjct: 201 SMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALT 260

Query: 70  -SPARTQRVPPSGYLA 84
            S  +   +   G +A
Sbjct: 261 MSAKKDPLLNIGGLVA 276


>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
           [TaxId: 549]}
          Length = 456

 Score = 26.3 bits (57), Expect = 0.72
 Identities = 5/46 (10%), Positives = 13/46 (28%)

Query: 10  HVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVS 55
            + N+  + E+ + Y + +          A             S+ 
Sbjct: 193 SMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIK 238


>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
           {Methanococcus maripaludis [TaxId: 39152]}
          Length = 434

 Score = 24.9 bits (53), Expect = 1.9
 Identities = 5/45 (11%), Positives = 14/45 (31%)

Query: 1   MEIGSSLNGHVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSP 45
             +      + D++  + +IC  Y++   + G             
Sbjct: 217 STLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKL 261


>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 445

 Score = 24.5 bits (52), Expect = 3.2
 Identities = 6/26 (23%), Positives = 9/26 (34%)

Query: 4   GSSLNGHVDNVSLLQEICAKYNLWLH 29
                   D +  L  ICA Y++   
Sbjct: 203 ACFAPRVPDRLEELAVICANYDIPHV 228


>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
           {Escherichia coli [TaxId: 562]}
          Length = 467

 Score = 23.7 bits (50), Expect = 5.0
 Identities = 10/75 (13%), Positives = 22/75 (29%)

Query: 10  HVDNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPLQPGHSVSLPLGTWLNLPLSLP 69
            + N+  +  I  KY++ + +     +  A             ++             L 
Sbjct: 202 SLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLA 261

Query: 70  SPARTQRVPPSGYLA 84
             A+   + P G L 
Sbjct: 262 MSAKKDAMVPMGGLL 276


>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
           methyltransferase Dot1l {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 406

 Score = 23.5 bits (50), Expect = 5.7
 Identities = 4/37 (10%), Positives = 7/37 (18%)

Query: 12  DNVSLLQEICAKYNLWLHLRGHNLSSLALNSHSPSPL 48
            +          YN  +           L +    P 
Sbjct: 128 SDTKGFVNAINLYNKMIREIPRQRIIDHLETIDKIPR 164


>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 76

 Score = 22.6 bits (48), Expect = 7.1
 Identities = 5/15 (33%), Positives = 8/15 (53%)

Query: 12 DNVSLLQEICAKYNL 26
            +S + EI  K N+
Sbjct: 8  SPISQVHEIGIKRNM 22


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.433 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 365,006
Number of extensions: 13964
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 8
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.6 bits)