BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2488
         (142 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2J0A|A Chain A, Structure Of The Catalytic Domain Of Mouse Manic Fringe
 pdb|2J0B|A Chain A, Structure Of The Catalytic Domain Of Mouse Manic Fringe In
           Complex With Udp And Manganese
          Length = 280

 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 84/144 (58%), Gaps = 11/144 (7%)

Query: 2   DWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGKF 61
           D Y+GK S+  P+     + K +T   + V+FWF TGGAG+CI+R LALKM+P ASG  F
Sbjct: 123 DVYVGKPSLNRPIHASELQSKQRT---KLVRFWFATGGAGFCINRQLALKMVPWASGSHF 179

Query: 62  ISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSYMQYA 121
           +     IRLPDDCT+GYIIE +L   +     FHSHLE ++ L   +  +QVT SY  + 
Sbjct: 180 VDTSALIRLPDDCTVGYIIECKLGGRLQPSPLFHSHLETLQLLGAAQLPEQVTLSYGVFE 239

Query: 122 KDVVNRLNI----ESFDTSVDPTR 141
                +LN+      F    DP+R
Sbjct: 240 ----GKLNVIKLPGPFSHEEDPSR 259


>pdb|3L77|A Chain A, X-Ray Structure Alcohol Dehydrogenase From Archaeon
           Thermococcus Sibiricus Complexed With 5-Hydroxy-Nadp
          Length = 235

 Score = 28.5 bits (62), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 13/75 (17%)

Query: 39  GAGYCISRALALKMLPIASGGKFISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHL 98
           G G  I+RALA     +A G + +   EK            I H L +   V E F+ HL
Sbjct: 13  GIGEAIARALARDGYALALGARSVDRLEK------------IAHELMQEQGV-EVFYHHL 59

Query: 99  EPMKFLHQDKFSQQV 113
           +  K    ++FS++V
Sbjct: 60  DVSKAESVEEFSKKV 74


>pdb|3TN7|A Chain A, Crystal Structure Of Short-Chain Alcohol Dehydrogenase
           From Hyperthermophilic Archaeon Thermococcus Sibiricus
           Complexed With 5- Hydroxy-Nadp
 pdb|3TN7|B Chain B, Crystal Structure Of Short-Chain Alcohol Dehydrogenase
           From Hyperthermophilic Archaeon Thermococcus Sibiricus
           Complexed With 5- Hydroxy-Nadp
          Length = 257

 Score = 28.1 bits (61), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 13/75 (17%)

Query: 39  GAGYCISRALALKMLPIASGGKFISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHL 98
           G G  I+RALA     +A G + +   EK            I H L +   V E F+ HL
Sbjct: 35  GIGEAIARALARDGYALALGARSVDRLEK------------IAHELMQEQGV-EVFYHHL 81

Query: 99  EPMKFLHQDKFSQQV 113
           +  K    ++FS++V
Sbjct: 82  DVSKAESVEEFSKKV 96


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,406,741
Number of Sequences: 62578
Number of extensions: 171301
Number of successful extensions: 336
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 323
Number of HSP's gapped (non-prelim): 14
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)