BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2488
(142 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24342|FNG_DROME Fringe glycosyltransferase OS=Drosophila melanogaster GN=fng PE=1
SV=1
Length = 412
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/140 (58%), Positives = 106/140 (75%), Gaps = 3/140 (2%)
Query: 2 DWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGKF 61
DWYLGK SI +PL+I + + KN T+ ++ + FWF TGGAG+C+SRAL LKMLPIA GGKF
Sbjct: 258 DWYLGKPSISSPLEI-HLDSKNTTTNKK-ITFWFATGGAGFCLSRALTLKMLPIAGGGKF 315
Query: 62 ISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSYMQYA 121
ISI +KIR PDD TMG+IIEH L+ P+TV++ FHSHLEPM+F+ QD F QV+FSY +
Sbjct: 316 ISIGDKIRFPDDVTMGFIIEHLLKVPLTVVDNFHSHLEPMEFIRQDTFQDQVSFSY-AHM 374
Query: 122 KDVVNRLNIESFDTSVDPTR 141
K+ N + ++ FD DP R
Sbjct: 375 KNQWNVIKVDGFDMKTDPKR 394
>sp|Q8JHF2|LFNG_DANRE Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Danio
rerio GN=lfng PE=2 SV=2
Length = 374
Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 93/142 (65%), Gaps = 5/142 (3%)
Query: 1 EDWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGK 60
+D Y+GK S+ P++ R G NK + V FWF TGGAG+CISR LALKM P ASGG
Sbjct: 216 QDMYIGKPSLDRPIEATERLGDNK---MRPVNFWFATGGAGFCISRGLALKMSPWASGGH 272
Query: 61 FISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSYMQY 120
F++ EKIRLPDDCT+GYIIE L +T FHSHLE ++ + + + +Q+T SY +
Sbjct: 273 FMNTAEKIRLPDDCTIGYIIESVLGVSLTRSSLFHSHLENLQQVSKSEVHKQITLSYGMF 332
Query: 121 AKDVVNRLNIE-SFDTSVDPTR 141
++ N +N++ +F DP+R
Sbjct: 333 -ENKRNIINMKGAFSVEEDPSR 353
>sp|Q2KJ92|LFNG_BOVIN Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Bos
taurus GN=LFNG PE=2 SV=1
Length = 380
Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 90/142 (63%), Gaps = 5/142 (3%)
Query: 1 EDWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGK 60
+D YLGK S+ P++ R +NK V FWF TGGAG+CISR LALKM P ASGG
Sbjct: 222 QDVYLGKPSLDRPIQATERVSENKVRP---VHFWFATGGAGFCISRGLALKMSPWASGGH 278
Query: 61 FISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSYMQY 120
F+S E+IRLPDDCT+GYI+E L P+ FHSHLE ++ + + +QVT SY +
Sbjct: 279 FMSTAERIRLPDDCTIGYIVEALLGVPLVRCGLFHSHLENLQQVPASELHEQVTLSYGMF 338
Query: 121 AKDVVNRLNIES-FDTSVDPTR 141
++ N ++I+ F DP+R
Sbjct: 339 -ENKRNSVHIKGPFSVEADPSR 359
>sp|Q6KFX9|RFNG_DANRE Beta-1,3-N-acetylglucosaminyltransferase radical fringe OS=Danio
rerio GN=rfng PE=2 SV=1
Length = 362
Score = 128 bits (322), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 90/145 (62%), Gaps = 11/145 (7%)
Query: 1 EDWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGK 60
+D YLG+ S+ P++ R K+ VKFWF TGGAG+CISR LALKM P AS G
Sbjct: 204 QDVYLGRPSLDHPIEAAERV---KSDGSVSVKFWFATGGAGFCISRGLALKMSPWASLGN 260
Query: 61 FISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSYMQY 120
FI+ EKIRLPDDCT+GYIIE L+ P+T FHSHLE ++ L + +QVT SY +
Sbjct: 261 FITTAEKIRLPDDCTIGYIIEALLEVPLTHTGLFHSHLENLQRLPAENILRQVTLSYGGF 320
Query: 121 AKDVVNRLNIES----FDTSVDPTR 141
NR N+ S F + DPTR
Sbjct: 321 E----NRRNVVSVGGAFSLAEDPTR 341
>sp|Q8NES3|LFNG_HUMAN Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Homo
sapiens GN=LFNG PE=1 SV=2
Length = 379
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 90/141 (63%), Gaps = 5/141 (3%)
Query: 2 DWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGKF 61
D Y+GK S+ P++ + R +NK V FWF TGGAG+CISR LALKM P ASGG F
Sbjct: 222 DVYVGKPSLDRPIQAMERVSENKVRP---VHFWFATGGAGFCISRGLALKMSPWASGGHF 278
Query: 62 ISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSYMQYA 121
++ E+IRLPDDCT+GYI+E L P+ FHSHLE ++ + + +QVT SY +
Sbjct: 279 MNTAERIRLPDDCTIGYIVEALLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMF- 337
Query: 122 KDVVNRLNIES-FDTSVDPTR 141
++ N ++++ F DP+R
Sbjct: 338 ENKRNAVHVKGPFSVEADPSR 358
>sp|O09010|LFNG_MOUSE Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Mus
musculus GN=Lfng PE=1 SV=1
Length = 378
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 90/142 (63%), Gaps = 5/142 (3%)
Query: 1 EDWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGK 60
+D Y+GK S+ P++ R ++K V FWF TGGAG+CISR LALKM P ASGG
Sbjct: 220 QDVYIGKPSLDRPIQATERISEHKVRP---VHFWFATGGAGFCISRGLALKMGPWASGGH 276
Query: 61 FISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSYMQY 120
F+S E+IRLPDDCT+GYI+E L P+ FHSHLE ++ + + +QVT SY +
Sbjct: 277 FMSTAERIRLPDDCTIGYIVEALLGVPLIRSGLFHSHLENLQQVPTTELHEQVTLSYGMF 336
Query: 121 AKDVVNRLNIES-FDTSVDPTR 141
++ N ++I+ F DP+R
Sbjct: 337 -ENKRNAVHIKGPFSVEADPSR 357
>sp|Q924T4|LFNG_RAT Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Rattus
norvegicus GN=Lfng PE=2 SV=1
Length = 378
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 90/142 (63%), Gaps = 5/142 (3%)
Query: 1 EDWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGK 60
+D Y+GK S+ P++ R +++ V FWF TGGAG+CISR LALKM P ASGG
Sbjct: 220 QDVYIGKPSLDRPIQATERISEHRVRP---VHFWFATGGAGFCISRGLALKMGPWASGGH 276
Query: 61 FISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSYMQY 120
F+S E+IRLPDDCT+GYI+E L P+ FHSHLE ++ + + +QVT SY +
Sbjct: 277 FMSTAERIRLPDDCTIGYIVEALLGVPLIRSGLFHSHLENLQQVPTTELHEQVTLSYGMF 336
Query: 121 AKDVVNRLNIES-FDTSVDPTR 141
++ N ++I+ F DP+R
Sbjct: 337 -ENKRNAVHIKGPFSVEADPSR 357
>sp|O12971|LFNG_CHICK Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Gallus
gallus GN=LFNG PE=2 SV=1
Length = 363
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 90/142 (63%), Gaps = 5/142 (3%)
Query: 1 EDWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGK 60
+D Y+GK S+ P++ R +NK V FWF TGGAG+CISR LALKM P ASGG
Sbjct: 205 QDIYIGKPSLDRPIQATERISENKMHP---VHFWFATGGAGFCISRGLALKMSPWASGGH 261
Query: 61 FISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSYMQY 120
F+S EKIRLPDDCT+GYIIE L + FHSHLE + + + + +QVT SY +
Sbjct: 262 FMSTAEKIRLPDDCTIGYIIESVLGVKLIRSNLFHSHLENLHQVPKTEIHKQVTLSYGMF 321
Query: 121 AKDVVNRLNIE-SFDTSVDPTR 141
++ N ++++ +F DP+R
Sbjct: 322 -ENKRNSIHMKGAFSVEEDPSR 342
>sp|P79948|LFNG_XENLA Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Xenopus
laevis GN=lfng PE=2 SV=1
Length = 375
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 82/140 (58%), Gaps = 3/140 (2%)
Query: 2 DWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGKF 61
D Y+GK S+ P++ R + S + V FWF TGGAG+CISR LALKM P ASGG F
Sbjct: 218 DIYIGKPSLDRPIQATERISE---SNMRPVNFWFATGGAGFCISRGLALKMSPWASGGHF 274
Query: 62 ISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSYMQYA 121
++ EKIRLPDDCT+GYIIE L + FHSHLE + + Q + QVT SY +
Sbjct: 275 MNTAEKIRLPDDCTIGYIIESVLGVKLIRSNLFHSHLENLHQVPQSEIHNQVTLSYGMFE 334
Query: 122 KDVVNRLNIESFDTSVDPTR 141
L +F DP+R
Sbjct: 335 NKRNAILMKGAFSVEEDPSR 354
>sp|O09009|RFNG_MOUSE Beta-1,3-N-acetylglucosaminyltransferase radical fringe OS=Mus
musculus GN=Rfng PE=2 SV=1
Length = 332
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 86/143 (60%), Gaps = 6/143 (4%)
Query: 1 EDWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGK 60
+D YLG+ S+ P++ R TS VKFWF TGGAG+C+SR LALKM P AS G
Sbjct: 168 QDIYLGRPSLDHPIEATERVQGGGTSNT--VKFWFATGGAGFCLSRGLALKMSPWASLGS 225
Query: 61 FISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSY--M 118
F+S E++RLPDDCT+GYI+E L + FHSHLE ++ L QQVT SY
Sbjct: 226 FMSTAERVRLPDDCTVGYIVEGLLGARLLHSPLFHSHLENLQRLPSGAILQQVTLSYGGP 285
Query: 119 QYAKDVVNRLNIESFDTSVDPTR 141
+ +VVN SF+ DPTR
Sbjct: 286 ENPHNVVNVAG--SFNIQQDPTR 306
>sp|O12972|RFNG_CHICK Beta-1,3-N-acetylglucosaminyltransferase radical fringe OS=Gallus
gallus GN=RFNG PE=2 SV=2
Length = 372
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 90/147 (61%), Gaps = 14/147 (9%)
Query: 1 EDWYLGKRSIKTPLKILN--REGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASG 58
+D Y+G+ S+ P++ + + +KTS VKFWF TGGAG+CISR LALKM P AS
Sbjct: 213 QDVYVGRPSLDHPIEAADHVQSDGSKTS----VKFWFATGGAGFCISRGLALKMSPWASL 268
Query: 59 GKFISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSYM 118
G FIS E++RLPDDCT+GYIIE L+ + FHSHLE ++ L + QQVT SY
Sbjct: 269 GNFISTAERVRLPDDCTIGYIIEGLLEVKLLHSPLFHSHLENLQRLQGESVLQQVTLSY- 327
Query: 119 QYAKDVVNRLNIES----FDTSVDPTR 141
D N+ N+ S F DPTR
Sbjct: 328 ---GDPENKHNVVSVGGVFGLQQDPTR 351
>sp|Q9R1U9|RFNG_RAT Beta-1,3-N-acetylglucosaminyltransferase radical fringe OS=Rattus
norvegicus GN=Rfng PE=2 SV=1
Length = 334
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 85/143 (59%), Gaps = 6/143 (4%)
Query: 1 EDWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGK 60
+D YLG+ S+ P++ R TS VKFWF TGGAG+C+SR LALKM P AS G
Sbjct: 170 QDIYLGRPSLDHPIEATERVQGGGTSNT--VKFWFATGGAGFCLSRGLALKMSPWASLGS 227
Query: 61 FISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSY--M 118
F+S E++RLPDDCT+GYI+E L + FHSHLE ++ L QQVT SY
Sbjct: 228 FMSTAERVRLPDDCTVGYIVEGLLGARLLHSPLFHSHLENLQKLPSGAVLQQVTLSYGGP 287
Query: 119 QYAKDVVNRLNIESFDTSVDPTR 141
+ +VVN SF DPTR
Sbjct: 288 ENPHNVVNVAG--SFSIRQDPTR 308
>sp|P79949|RFNG_XENLA Beta-1,3-N-acetylglucosaminyltransferase radical fringe OS=Xenopus
laevis GN=rfng PE=2 SV=1
Length = 340
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 88/141 (62%), Gaps = 5/141 (3%)
Query: 2 DWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGKF 61
D Y+G+ S+ P++ ++R + + +KFWF TGGAG+CISR LALKM P AS G F
Sbjct: 204 DVYVGRPSLDHPVETVDRMKGDGSGS---LKFWFATGGAGFCISRGLALKMSPWASMGNF 260
Query: 62 ISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSY-MQY 120
IS EK+RLPDDCT+GYIIE L M FHSHLE ++ L + +QVT SY
Sbjct: 261 ISTAEKVRLPDDCTIGYIIEGMLDVKMQHSNLFHSHLEHLQRLPTESLLKQVTLSYGGPD 320
Query: 121 AKDVVNRLNIESFDTSVDPTR 141
K V R+N +F + DPTR
Sbjct: 321 NKWNVVRVN-GAFSLAEDPTR 340
>sp|O09008|MFNG_MOUSE Beta-1,3-N-acetylglucosaminyltransferase manic fringe OS=Mus
musculus GN=Mfng PE=1 SV=1
Length = 321
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 85/144 (59%), Gaps = 11/144 (7%)
Query: 2 DWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGKF 61
D Y+GK S+ P+ + KN+T + V+FWF TGGAG+CI+R LALKM+P ASG F
Sbjct: 164 DVYVGKPSLNRPIHASELQSKNRT---KLVRFWFATGGAGFCINRQLALKMVPWASGSHF 220
Query: 62 ISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSYMQYA 121
+ IRLPDDCT+GYIIE +L + FHSHLE ++ L + +QVT SY +
Sbjct: 221 VDTSALIRLPDDCTVGYIIECKLGGRLQPSPLFHSHLETLQLLGAAQLPEQVTLSYGVFE 280
Query: 122 KDVVNRLNI----ESFDTSVDPTR 141
+LN+ F DP+R
Sbjct: 281 ----GKLNVIKLPGPFSHEEDPSR 300
>sp|Q9Y644|RFNG_HUMAN Beta-1,3-N-acetylglucosaminyltransferase radical fringe OS=Homo
sapiens GN=RFNG PE=2 SV=3
Length = 331
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 85/143 (59%), Gaps = 6/143 (4%)
Query: 1 EDWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGK 60
+D YLG+ S+ P++ R +T VKFWF TGGAG+C+SR LALKM P AS G
Sbjct: 167 QDVYLGRPSLDHPIEATERVQGGRTVTT--VKFWFATGGAGFCLSRGLALKMSPWASLGS 224
Query: 61 FISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSY--M 118
F+S E++RLPDDCT+GYI+E L + FHSHLE ++ L D QQVT S+
Sbjct: 225 FMSTAEQVRLPDDCTVGYIVEGLLGARLLHSPLFHSHLENLQRLPPDTLLQQVTLSHGGP 284
Query: 119 QYAKDVVNRLNIESFDTSVDPTR 141
+ +VVN F DPTR
Sbjct: 285 ENPHNVVNVAG--GFSLHQDPTR 305
>sp|O00587|MFNG_HUMAN Beta-1,3-N-acetylglucosaminyltransferase manic fringe OS=Homo
sapiens GN=MFNG PE=1 SV=2
Length = 321
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 86/141 (60%), Gaps = 5/141 (3%)
Query: 2 DWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGKF 61
D Y+G+ S+ P+ + N+T + V+FWF TGGAG+CI+R LALKM P ASG +F
Sbjct: 164 DVYVGRPSLNRPIHASEPQPHNRT---RLVQFWFATGGAGFCINRKLALKMAPWASGSRF 220
Query: 62 ISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSYMQYA 121
+ IRLPDDCTMGYIIE +L + FHSHLE ++ L + +QVT SY +
Sbjct: 221 MDTSALIRLPDDCTMGYIIECKLGGRLQPSPLFHSHLETLQLLRTAQLPEQVTLSYGVF- 279
Query: 122 KDVVNRLNIE-SFDTSVDPTR 141
+ +N + ++ F DP+R
Sbjct: 280 EGKLNVIKLQGPFSPEEDPSR 300
>sp|Q5IS64|MFNG_PANTR Beta-1,3-N-acetylglucosaminyltransferase manic fringe OS=Pan
troglodytes GN=MFNG PE=2 SV=1
Length = 321
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 86/141 (60%), Gaps = 5/141 (3%)
Query: 2 DWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGKF 61
D Y+G+ S+ P+ + N+T + V+FWF TGGAG+CI+R LALKM P ASG +F
Sbjct: 164 DVYVGRPSLNRPIHASEPQPHNRT---RLVQFWFATGGAGFCINRRLALKMAPWASGSRF 220
Query: 62 ISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSYMQYA 121
+ IRLPDDCTMGYIIE +L + FHSHLE ++ L + +QVT SY +
Sbjct: 221 MDTSALIRLPDDCTMGYIIECKLGGRLQPSPLFHSHLETLQLLRTAQLPEQVTLSYGVF- 279
Query: 122 KDVVNRLNIE-SFDTSVDPTR 141
+ +N + ++ F DP+R
Sbjct: 280 EGKLNVIKLQGPFSPEEDPSR 300
>sp|Q9YHB3|RFNG_NOTVI Beta-1,3-N-acetylglucosaminyltransferase radical fringe
OS=Notophthalmus viridescens GN=RFNG PE=2 SV=1
Length = 396
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 86/143 (60%), Gaps = 7/143 (4%)
Query: 1 EDWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGK 60
+D YLG+ S+ P++ + R K+ V+FWF TGGAG+CISR LALKM P AS G
Sbjct: 238 QDVYLGRPSLDHPIEAIERV---KSDGSASVRFWFATGGAGFCISRGLALKMSPWASMGN 294
Query: 61 FISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSY--M 118
FI+ E +RLPDDCT+GYIIE L M FHSHLE ++ L +QVT SY
Sbjct: 295 FITTAELVRLPDDCTIGYIIEGLLGVKMHHTPLFHSHLENLQRLPLQSVLKQVTLSYGGP 354
Query: 119 QYAKDVVNRLNIESFDTSVDPTR 141
++VV+ I S + DPTR
Sbjct: 355 DNKRNVVSVGGIFSLEN--DPTR 375
>sp|Q5YB40|MFNG_DANRE Beta-1,3-N-acetylglucosaminyltransferase manic fringe OS=Danio
rerio GN=mfng PE=2 SV=3
Length = 360
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 79/141 (56%), Gaps = 5/141 (3%)
Query: 2 DWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGKF 61
D Y+GK S+ P++ NKT V FWF TGGAG+C+SR LA +M P ASG +F
Sbjct: 193 DIYVGKPSLDRPMRAQELLEGNKTRD---VHFWFATGGAGFCLSRNLAERMAPWASGPRF 249
Query: 62 ISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSYMQYA 121
I LPDDCT+G+I+E RL M FHSHLE + L +QVT SY +
Sbjct: 250 EQTSAVIMLPDDCTVGFIVERRLGISMIHSNMFHSHLENLLLLSPSDIPKQVTLSYGWF- 308
Query: 122 KDVVNRLNIES-FDTSVDPTR 141
+ +N + ++ F DP+R
Sbjct: 309 ESKMNSVELKGVFTKDEDPSR 329
>sp|A5N206|RUVB_CLOK5 Holliday junction ATP-dependent DNA helicase RuvB OS=Clostridium
kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)
GN=ruvB PE=3 SV=1
Length = 350
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 4 YLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKM---LPIASG-- 58
Y+G+R +K LKI KN+ V F+ G ++ +AL+M L I SG
Sbjct: 29 YIGQRKVKEKLKIFIEAAKNRKEALDHVLFYGPPGLGKTTLANIIALEMGGNLKITSGPA 88
Query: 59 ----GKFISICEKIRLPDDCTMGYIIE-HRLQRPMTVI 91
G +I + DD + +I E HRL R + I
Sbjct: 89 IERAGDLAAILTGL---DDRDVLFIDEIHRLNRSVEEI 123
>sp|B9E5Q8|RUVB_CLOK1 Holliday junction ATP-dependent DNA helicase RuvB OS=Clostridium
kluyveri (strain NBRC 12016) GN=ruvB PE=3 SV=1
Length = 350
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 4 YLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKM---LPIASG-- 58
Y+G+R +K LKI KN+ V F+ G ++ +AL+M L I SG
Sbjct: 29 YIGQRKVKEKLKIFIEAAKNRKEALDHVLFYGPPGLGKTTLANIIALEMGGNLKITSGPA 88
Query: 59 ----GKFISICEKIRLPDDCTMGYIIE-HRLQRPMTVI 91
G +I + DD + +I E HRL R + I
Sbjct: 89 IERAGDLAAILTGL---DDRDVLFIDEIHRLNRSVEEI 123
>sp|A9BW85|F16PA_DELAS Fructose-1,6-bisphosphatase class 1 OS=Delftia acidovorans (strain
DSM 14801 / SPH-1) GN=fbp PE=3 SV=1
Length = 335
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
Query: 9 SIKTPLKILNR-EGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASG--------- 58
SI T +L + EG ++Q F++ AGYCI +L + G
Sbjct: 127 SIGTIFSVLKKPEGHPGVTEQDFMQPGTQQVAAGYCIYGPQTTLVLTVGDGVSMFTLDRE 186
Query: 59 -GKFISICEKIRLPDDC 74
G F+ + E IR+P+D
Sbjct: 187 QGSFVLVQENIRIPEDT 203
>sp|E4V6I8|PDSA_ARTGP Protostadienol synthase A OS=Arthroderma gypseum (strain ATCC
MYA-4604 / CBS 118893) GN=PDSA PE=3 SV=1
Length = 735
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 48 LALKMLPIASGGKFISICEKIRLPDDCTMGYIIEHRLQRPMT-VIEEFHSHLEPMKFLHQ 106
LA LP+ G ++ +M Y+ HR PMT +I+E L M +
Sbjct: 222 LAPGFLPLNPGNWWVHTRNVF-----VSMSYLFGHRFSAPMTPLIQELREELYDMPYHKI 276
Query: 107 DKFSQQVTFS 116
D F+QQ S
Sbjct: 277 DWFAQQTNIS 286
>sp|A3PCW7|G6PI_PROM0 Glucose-6-phosphate isomerase OS=Prochlorococcus marinus (strain
MIT 9301) GN=pgi PE=3 SV=1
Length = 527
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 15 KILNREGKNKTSKQQFVKFWFGTGGAG 41
+ILN + KNK +KQ W G GG+G
Sbjct: 101 QILNGDIKNKNNKQYTDVLWIGIGGSG 127
>sp|Q9H5U6|ZCHC4_HUMAN Zinc finger CCHC domain-containing protein 4 OS=Homo sapiens
GN=ZCCHC4 PE=1 SV=3
Length = 513
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 43 CISRALALKMLPIASGGKFISICEKIRLPDDC-------TMGYIIEHRLQRPMTVIEEFH 95
C+ R L LP+ + KF C+++ LPDD +G + +L+RP ++
Sbjct: 107 CVERYLKFIELPL-TQRKFCQTCQQLLLPDDWGQHSEHQVLGNVSITQLRRPSQLLYPLE 165
Query: 96 SHLEPMKFLHQDKFSQ 111
+ ++L D+ Q
Sbjct: 166 NKKTNAQYLFADRSCQ 181
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,770,357
Number of Sequences: 539616
Number of extensions: 2142425
Number of successful extensions: 3986
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3953
Number of HSP's gapped (non-prelim): 29
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)