Query psy2488
Match_columns 142
No_of_seqs 96 out of 105
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 17:31:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2488.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2488hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02434 Fringe: Fringe-like; 100.0 3.8E-50 8.2E-55 328.6 1.0 137 1-141 115-252 (252)
2 PLN03153 hypothetical protein; 99.1 4.4E-11 9.5E-16 108.6 3.2 99 1-121 239-343 (537)
3 PF04646 DUF604: Protein of un 97.4 2.5E-05 5.4E-10 66.0 -1.1 63 30-97 4-67 (255)
4 KOG2246|consensus 95.6 0.0032 6.8E-08 55.2 0.1 54 35-91 213-268 (364)
5 PF01762 Galactosyl_T: Galacto 93.4 0.024 5.2E-07 44.0 0.2 52 31-91 143-194 (195)
6 PLN03193 beta-1,3-galactosyltr 93.3 0.039 8.4E-07 49.6 1.3 58 30-96 298-355 (408)
7 KOG2287|consensus 90.3 0.11 2.3E-06 45.0 0.7 57 31-95 249-305 (349)
8 KOG2288|consensus 85.4 0.62 1.3E-05 40.1 2.3 49 32-91 170-218 (274)
9 PF01755 Glyco_transf_25: Glyc 79.3 1.6 3.4E-05 33.4 2.3 33 35-76 168-200 (200)
10 KOG3708|consensus 77.6 0.61 1.3E-05 43.9 -0.5 48 36-87 141-188 (681)
11 PLN03133 beta-1,3-galactosyltr 67.4 2.8 6.1E-05 39.8 1.3 54 30-89 535-590 (636)
12 KOG3359|consensus 61.8 6.5 0.00014 38.0 2.6 50 71-125 311-361 (723)
13 PF11513 TA0956: Thermoplasma 42.0 20 0.00044 26.9 2.0 15 70-84 59-73 (110)
14 cd06532 Glyco_transf_25 Glycos 38.5 30 0.00065 25.1 2.5 17 38-54 99-115 (128)
15 PF14216 DUF4326: Domain of un 38.0 17 0.00037 25.9 1.0 17 1-17 14-31 (86)
16 COG1875 NYN ribonuclease and A 35.7 7.6 0.00016 35.4 -1.3 57 48-115 299-356 (436)
17 PF13506 Glyco_transf_21: Glyc 30.7 11 0.00023 29.2 -1.1 51 32-92 97-147 (175)
18 smart00311 PWI PWI, domain in 27.8 3.6 7.9E-05 28.0 -3.7 37 45-85 2-38 (74)
19 PTZ00210 UDP-GlcNAc-dependent 27.3 12 0.00025 33.8 -1.5 52 33-85 246-307 (382)
20 PF14451 Ub-Mut7C: Mut7-C ubiq 25.5 26 0.00055 24.7 0.2 43 46-94 10-52 (81)
21 PF11185 DUF2971: Protein of u 24.1 36 0.00078 21.9 0.7 12 35-46 5-16 (90)
22 cd06436 GlcNAc-1-P_transferase 22.9 79 0.0017 23.7 2.5 21 36-56 162-185 (191)
23 cd00542 Ntn_PVA Penicillin V a 21.7 24 0.00052 29.9 -0.6 17 88-104 172-188 (303)
24 KOG3289|consensus 21.3 35 0.00077 28.2 0.3 10 91-100 47-56 (199)
25 COG0501 HtpX Zn-dependent prot 21.0 63 0.0014 26.1 1.7 21 34-54 130-154 (302)
26 KOG1371|consensus 20.6 38 0.00082 30.2 0.4 20 34-53 5-24 (343)
No 1
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=100.00 E-value=3.8e-50 Score=328.64 Aligned_cols=137 Identities=46% Similarity=0.720 Sum_probs=84.7
Q ss_pred CCeeeccCCCCCCceeeccCCCCCcCccceeeEEeeecceeeEeCHHHHHhhcccccCCceeeecccccCCCCceeeeee
Q psy2488 1 EDWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGKFISICEKIRLPDDCTMGYII 80 (142)
Q Consensus 1 ~D~YlGkpS~~~pi~~~e~~~~~~~~~~~~v~fwFATGGAG~CiSr~La~KM~pwa~~g~f~~t~~~irlPDDctlG~II 80 (142)
+|||||+|+..+|+++.++..++ ..+.+.||||||||||||||+|++||.||+++++++.+++++++||||+||+||
T Consensus 115 ~~~yiG~~~~~~~~~~~~~~~~~---~~~~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci 191 (252)
T PF02434_consen 115 EPIYIGRPSGDRPIEIIHRFNPN---KSKDSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCI 191 (252)
T ss_dssp S--EEE-EE-------------------------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHH
T ss_pred cCEEeeeeccCccceeecccccc---ccCcCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhH
Confidence 58999999999999997775544 346889999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCceeccccccCccCcccCCccccccceeeeecCCCCCccceeeccC-CCCCCCCCC
Q psy2488 81 EHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSYMQYAKDVVNRLNIES-FDTSVDPTR 141 (142)
Q Consensus 81 e~~Lgv~lt~s~lFHSHlE~L~~l~~~~L~~QvtlSyg~~~~~~~N~i~~~~-F~~~~DPtR 141 (142)
+.+|||++|+|++||||+|+|++|++++|.+||+||||+++| ++|+++|++ |+.++||||
T Consensus 192 ~~~lgv~lt~s~~fhs~~~~l~~~~~~~l~~q~~~s~~~~~~-~~n~~~~~~~f~~~~dp~r 252 (252)
T PF02434_consen 192 ENLLGVPLTHSPLFHSHLENLQDYNPETLHRQVPISYHKFEN-KINIINVKGPFSFEEDPTR 252 (252)
T ss_dssp HHTT---EEE-TT---SSS-GGG--TTTGGG-SEEE-EEETT-EEE------SS-TTT-TTS
T ss_pred HhcCCcceeechhhcccCcccccCCHHHhccCCCeecCCCcC-ccCceecCCCCCccCCCCC
Confidence 999999999999999999999999999999999999999997 999999998 999999999
No 2
>PLN03153 hypothetical protein; Provisional
Probab=99.09 E-value=4.4e-11 Score=108.58 Aligned_cols=99 Identities=22% Similarity=0.218 Sum_probs=74.5
Q ss_pred CCeeeccCCCCCCceeeccCCCCCcCccceeeEEeeecceeeEeCHHHHHhhcccccCCceeeeccc---ccCCCCceee
Q psy2488 1 EDWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGKFISICEK---IRLPDDCTMG 77 (142)
Q Consensus 1 ~D~YlGkpS~~~pi~~~e~~~~~~~~~~~~v~fwFATGGAG~CiSr~La~KM~pwa~~g~f~~t~~~---irlPDDctlG 77 (142)
+.+|||.+|-..+ .| ...+|.||+|||||+|||+||.+|.+.- ..|.. -....|+.||
T Consensus 239 kp~YIGs~Se~~~--------qn-----~~f~~~fA~GGAG~~LSrPLae~L~~~~------d~C~~rY~~~~~gD~rL~ 299 (537)
T PLN03153 239 EMVYVGGPSESHS--------AN-----SYFSHNMAFGGGGIAISYPLAEALSRIL------DDCLDRYPKLYGSDDRLH 299 (537)
T ss_pred CCEEecccccccc--------cc-----cccccccccCCceEEEcHHHHHHHHHHh------hhhhhhcccCCCcHHHHH
Confidence 4678888885331 11 2335689999999999999999999852 22321 1356788999
Q ss_pred eeeeeccCCCceeccccccCccCcccCCccccccc---eeeeecCCC
Q psy2488 78 YIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQ---VTFSYMQYA 121 (142)
Q Consensus 78 ~IIe~~Lgv~lt~s~lFHSHlE~L~~l~~~~L~~Q---vtlSyg~~~ 121 (142)
.||+. +||+||+.+.||| ..+..-+..-|..+ ..+|.|+.+
T Consensus 300 ~CL~e-lGV~LT~~~gfhQ--~D~~Gd~~G~les~p~~P~vSlHH~~ 343 (537)
T PLN03153 300 ACITE-LGVPLSREPGFHQ--WDIRGNAHGLLSSHPIAPFVSIHHVE 343 (537)
T ss_pred HHHHH-cCCCceecCCccc--cccCCCcchHhhcCCCCCceeeeecc
Confidence 99994 7999999999999 77887777777766 347888874
No 3
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=97.39 E-value=2.5e-05 Score=65.98 Aligned_cols=63 Identities=24% Similarity=0.331 Sum_probs=46.9
Q ss_pred eeeEEeeecceeeEeCHHHHHhhcccccCCceeeeccccc-CCCCceeeeeeeeccCCCceeccccccC
Q psy2488 30 FVKFWFGTGGAGYCISRALALKMLPIASGGKFISICEKIR-LPDDCTMGYIIEHRLQRPMTVIEEFHSH 97 (142)
Q Consensus 30 ~v~fwFATGGAG~CiSr~La~KM~pwa~~g~f~~t~~~ir-lPDDctlG~IIe~~Lgv~lt~s~lFHSH 97 (142)
..+|..|=|||||-||++||.+|.+.-- + |..+--. -.-|--|-.||. .|||+||..+-|||.
T Consensus 4 ~fs~~MAfGGgG~~iS~pLa~~L~~~~d-~---C~~r~~~~~g~D~~i~~C~~-~lgv~LT~e~g~hQ~ 67 (255)
T PF04646_consen 4 MFSYNMAFGGGGFAISYPLAKALAKMQD-D---CIERYPHLYGGDQRIQACIA-ELGVPLTKEPGFHQM 67 (255)
T ss_pred eeeccccccCceeEEcHHHHHHHHHHHH-H---HHHhcCCCCCchHHHHHHHH-HhCCCceecCCceeE
Confidence 3467779999999999999999998321 1 3222222 245777778886 499999999999994
No 4
>KOG2246|consensus
Probab=95.64 E-value=0.0032 Score=55.25 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=39.9
Q ss_pred eeecceeeEeCHHHHHhhcccccCCceeeeccccc--CCCCceeeeeeeeccCCCceec
Q psy2488 35 FGTGGAGYCISRALALKMLPIASGGKFISICEKIR--LPDDCTMGYIIEHRLQRPMTVI 91 (142)
Q Consensus 35 FATGGAG~CiSr~La~KM~pwa~~g~f~~t~~~ir--lPDDctlG~IIe~~Lgv~lt~s 91 (142)
|..||||.++|+++......=+. +-...|..=- -++|..||.|++ .+||+++.+
T Consensus 213 y~~g~ag~~ls~aa~~~la~~l~--~~~~~C~~~~~~~~eD~~i~~Cl~-~~GV~~~d~ 268 (364)
T KOG2246|consen 213 YSSGGAGYVLSFAALRRLAERLL--NNEDKCPQRYPSYGEDRRIGRCLA-EVGVPATDE 268 (364)
T ss_pred cccCCCCcceeHHHHHHHHHHHh--cchhhcccccCCchhHHHHHHHHH-HhCCCccCc
Confidence 77899999999887766443222 2224454433 599999999999 799999999
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=93.41 E-value=0.024 Score=43.95 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=39.5
Q ss_pred eeEEeeecceeeEeCHHHHHhhcccccCCceeeecccccCCCCceeeeeeeeccCCCceec
Q psy2488 31 VKFWFGTGGAGYCISRALALKMLPIASGGKFISICEKIRLPDDCTMGYIIEHRLQRPMTVI 91 (142)
Q Consensus 31 v~fwFATGGAG~CiSr~La~KM~pwa~~g~f~~t~~~irlPDDctlG~IIe~~Lgv~lt~s 91 (142)
..-.|++| +|+-||+.+|.++..++.. + +.+ --||+.+|.+.+ .+|++.++-
T Consensus 143 ~yP~y~~G-~~yvls~~~v~~i~~~~~~-----~-~~~-~~eDv~iGi~~~-~~~i~~~~~ 194 (195)
T PF01762_consen 143 YYPPYCSG-GGYVLSSDVVKRIYKASSH-----T-PFF-PLEDVFIGILAE-KLGIKPIHD 194 (195)
T ss_pred cCCCcCCC-CeEEecHHHHHHHHHHhhc-----C-CCC-CchHHHHHHHHH-HCCCCccCC
Confidence 34457775 5799999999999986552 2 333 369999999998 899887764
No 6
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=93.26 E-value=0.039 Score=49.57 Aligned_cols=58 Identities=21% Similarity=0.188 Sum_probs=43.7
Q ss_pred eeeEEeeecceeeEeCHHHHHhhcccccCCceeeecccccCCCCceeeeeeeeccCCCceecccccc
Q psy2488 30 FVKFWFGTGGAGYCISRALALKMLPIASGGKFISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHS 96 (142)
Q Consensus 30 ~v~fwFATGGAG~CiSr~La~KM~pwa~~g~f~~t~~~irlPDDctlG~IIe~~Lgv~lt~s~lFHS 96 (142)
...|.||+|++ |.||+.||..+.- +.. .-... -.||++||.++. -|+|+-.+..-|+.
T Consensus 298 ~~YPpyAsG~g-YVlS~DLa~~I~~---n~~---~L~~y-~~EDV~vG~Wl~-~L~V~~vdd~~fcc 355 (408)
T PLN03193 298 NKYFRHATGQL-YAISKDLASYISI---NQH---VLHKY-ANEDVSLGSWFI-GLDVEHIDDRRLCC 355 (408)
T ss_pred ccCCCCCCcce-EEehHHHHHHHHh---Chh---hhccc-CcchhhhhhHhc-cCCceeeecccccC
Confidence 55677899865 9999999999962 111 11122 389999999997 68999999988864
No 7
>KOG2287|consensus
Probab=90.31 E-value=0.11 Score=44.98 Aligned_cols=57 Identities=23% Similarity=0.231 Sum_probs=41.4
Q ss_pred eeEEeeecceeeEeCHHHHHhhcccccCCceeeecccccCCCCceeeeeeeeccCCCceeccccc
Q psy2488 31 VKFWFGTGGAGYCISRALALKMLPIASGGKFISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFH 95 (142)
Q Consensus 31 v~fwFATGGAG~CiSr~La~KM~pwa~~g~f~~t~~~irlPDDctlG~IIe~~Lgv~lt~s~lFH 95 (142)
+.--||.|++ |.||+.+|.++--=+..-+|.. .||+.+|-|++..+|++...-+.|.
T Consensus 249 ~YP~Y~sG~g-Yvis~~~a~~l~~~s~~~~~~~-------iEDV~~g~~l~~~~gi~~~~~~~~~ 305 (349)
T KOG2287|consen 249 VYPPYASGPG-YVISGDAARRLLKASKHLKFFP-------IEDVFVGGCLAEDLGIKPVNHPGFF 305 (349)
T ss_pred CCCCcCCCce-eEecHHHHHHHHHHhcCCCccc-------hHHHHHHHHHHHhcCCCcccCcccc
Confidence 4456777755 9999999999988333233333 7999999999988787766655533
No 8
>KOG2288|consensus
Probab=85.40 E-value=0.62 Score=40.07 Aligned_cols=49 Identities=20% Similarity=0.284 Sum_probs=32.5
Q ss_pred eEEeeecceeeEeCHHHHHhhcccccCCceeeecccccCCCCceeeeeeeeccCCCceec
Q psy2488 32 KFWFGTGGAGYCISRALALKMLPIASGGKFISICEKIRLPDDCTMGYIIEHRLQRPMTVI 91 (142)
Q Consensus 32 ~fwFATGGAG~CiSr~La~KM~pwa~~g~f~~t~~~irlPDDctlG~IIe~~Lgv~lt~s 91 (142)
.|-+||||. +.|||.||.-+.= ....|-. =-.||++||-++- |+++.|.
T Consensus 170 YfrhA~G~~-YvlS~dLa~yi~i--n~~lL~~-----y~nEDVSlGaW~~---gldV~h~ 218 (274)
T KOG2288|consen 170 YFRHATGGG-YVLSKDLATYISI--NRQLLHK-----YANEDVSLGAWMI---GLDVEHV 218 (274)
T ss_pred cchhccCce-EEeeHHHHHHHHH--hHHHHHh-----hccCCcccceeee---eeeeeEe
Confidence 899999976 9999999975443 1111100 1259999999875 4445443
No 9
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=79.32 E-value=1.6 Score=33.43 Aligned_cols=33 Identities=42% Similarity=0.538 Sum_probs=25.7
Q ss_pred eeecceeeEeCHHHHHhhcccccCCceeeecccccCCCCcee
Q psy2488 35 FGTGGAGYCISRALALKMLPIASGGKFISICEKIRLPDDCTM 76 (142)
Q Consensus 35 FATGGAG~CiSr~La~KM~pwa~~g~f~~t~~~irlPDDctl 76 (142)
...|-+||+|||.-|.||... +..+.+|.|..|
T Consensus 168 ~~~~t~aY~Is~~gA~kLL~~---------~~~~~~pvD~~m 200 (200)
T PF01755_consen 168 YPYGTCAYLISRKGARKLLEA---------SKPIRLPVDIFM 200 (200)
T ss_pred CCCcceeeeeCHHHHHHHHHh---------CcCCCccCcCCC
Confidence 345667899999999999873 356779999764
No 10
>KOG3708|consensus
Probab=77.60 E-value=0.61 Score=43.89 Aligned_cols=48 Identities=15% Similarity=0.075 Sum_probs=35.9
Q ss_pred eecceeeEeCHHHHHhhcccccCCceeeecccccCCCCceeeeeeeeccCCC
Q psy2488 36 GTGGAGYCISRALALKMLPIASGGKFISICEKIRLPDDCTMGYIIEHRLQRP 87 (142)
Q Consensus 36 ATGGAG~CiSr~La~KM~pwa~~g~f~~t~~~irlPDDctlG~IIe~~Lgv~ 87 (142)
..+++|+-||+.+..||.|-.- | |.-..+.--+|..+|-||..-.||-
T Consensus 141 C~l~~G~LLS~s~l~~lrnnle-~---C~~~~lsad~d~~lgrCi~~At~v~ 188 (681)
T KOG3708|consen 141 CRLDTGMLLSQSLLHALRNNLE-G---CRNDILSADPDEWLGRCIQDATGVG 188 (681)
T ss_pred cccccceeecHHHHHHHHhhHH-H---hhcccccCCcHHHHHHHHHHhhcCC
Confidence 7899999999999999999432 2 2222233346799999998888876
No 11
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=67.43 E-value=2.8 Score=39.78 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=34.7
Q ss_pred eeeEEeeecceeeEeCHHHHHhhcccccCCceeeecccccCCCCceeeeeeeec--cCCCce
Q psy2488 30 FVKFWFGTGGAGYCISRALALKMLPIASGGKFISICEKIRLPDDCTMGYIIEHR--LQRPMT 89 (142)
Q Consensus 30 ~v~fwFATGGAG~CiSr~La~KM~pwa~~g~f~~t~~~irlPDDctlG~IIe~~--Lgv~lt 89 (142)
.....||.||+ |.||+.+|.++---+. . ..-..+. -||+.||.|++.+ +|+++.
T Consensus 535 ~~YPpYasG~g-YVlS~Dla~~L~~~s~-s---~~l~~f~-lEDVyvGi~l~~l~k~gl~v~ 590 (636)
T PLN03133 535 ETYPPWAHGPG-YVVSRDIAKEVYKRHK-E---GRLKMFK-LEDVAMGIWIAEMKKEGLEVK 590 (636)
T ss_pred CCCCCCCCcCE-EEEcHHHHHHHHHhhh-h---cccCcCC-hhhHhHHHHHHHhcccCCCce
Confidence 34568998765 9999999999843110 0 1122233 6999999998643 344443
No 12
>KOG3359|consensus
Probab=61.82 E-value=6.5 Score=38.00 Aligned_cols=50 Identities=28% Similarity=0.249 Sum_probs=35.8
Q ss_pred CCCceeeeeeeeccCCCceeccccccCccCcccCCccccccceeeeecCC-CCCcc
Q psy2488 71 PDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSYMQY-AKDVV 125 (142)
Q Consensus 71 PDDctlG~IIe~~Lgv~lt~s~lFHSHlE~L~~l~~~~L~~QvtlSyg~~-~~~~~ 125 (142)
|.|++.|..|+ ++..-+..-..|||.+ .+|..+-.+|..-+|+.. +||.|
T Consensus 311 p~~v~~GS~It--ir~~~~~~gyLHSH~~---~YP~g~S~QQQVT~Y~~~D~NN~W 361 (723)
T KOG3359|consen 311 PRDVAYGSTIT--LRHHKTGGGYLHSHLH---TYPEGYSEQQQVTGYPHKDANNEW 361 (723)
T ss_pred cceeeeccEEE--EEecCCcceeeecccc---cCCCCcCccceEEeecccCCCceE
Confidence 89999999997 6666777889999965 577774555555567555 45444
No 13
>PF11513 TA0956: Thermoplasma acidophilum protein TA0956; InterPro: IPR021595 TA0956 is a protein from Thermoplasma acidophilum which currently has no known function however the structure has been determined. The protein has a two-layered alpha/beta-sandwich topology and is a putative Elongation factor 1-alpha binding motif. ; PDB: 2K24_A 2JMK_A.
Probab=42.01 E-value=20 Score=26.89 Aligned_cols=15 Identities=27% Similarity=0.760 Sum_probs=12.1
Q ss_pred CCCCceeeeeeeecc
Q psy2488 70 LPDDCTMGYIIEHRL 84 (142)
Q Consensus 70 lPDDctlG~IIe~~L 84 (142)
+|+|=|+||||-+.-
T Consensus 59 mPEDKTvGFvviN~d 73 (110)
T PF11513_consen 59 MPEDKTVGFVVINKD 73 (110)
T ss_dssp -TTSEEEEEEEEETT
T ss_pred CCCCceeEEEEEecC
Confidence 699999999998643
No 14
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=38.51 E-value=30 Score=25.14 Aligned_cols=17 Identities=53% Similarity=0.718 Sum_probs=11.6
Q ss_pred cceeeEeCHHHHHhhcc
Q psy2488 38 GGAGYCISRALALKMLP 54 (142)
Q Consensus 38 GGAG~CiSr~La~KM~p 54 (142)
|.+||+|||..|.||..
T Consensus 99 ~~~~Y~vs~~~A~~ll~ 115 (128)
T cd06532 99 GTAGYLVSRKGAKKLLA 115 (128)
T ss_pred CceEEEeCHHHHHHHHH
Confidence 55567777777777665
No 15
>PF14216 DUF4326: Domain of unknown function (DUF4326)
Probab=37.99 E-value=17 Score=25.90 Aligned_cols=17 Identities=24% Similarity=0.513 Sum_probs=11.9
Q ss_pred CCeeeccCC-CCCCceee
Q psy2488 1 EDWYLGKRS-IKTPLKIL 17 (142)
Q Consensus 1 ~D~YlGkpS-~~~pi~~~ 17 (142)
.+||||||| .-.|+...
T Consensus 14 ~~vyIgR~s~wGNPf~~~ 31 (86)
T PF14216_consen 14 GAVYIGRPSKWGNPFRVG 31 (86)
T ss_pred CCEEeCCCCcCCCCCcCC
Confidence 378999998 44566554
No 16
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=35.67 E-value=7.6 Score=35.43 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=39.1
Q ss_pred HHHhhcccccCCceeeecccccCCCCceeeeeeeeccC-CCceeccccccCccCcccCCccccccceee
Q psy2488 48 LALKMLPIASGGKFISICEKIRLPDDCTMGYIIEHRLQ-RPMTVIEEFHSHLEPMKFLHQDKFSQQVTF 115 (142)
Q Consensus 48 La~KM~pwa~~g~f~~t~~~irlPDDctlG~IIe~~Lg-v~lt~s~lFHSHlE~L~~l~~~~L~~Qvtl 115 (142)
-..||.||+. -+..+-|.+--+|+|+ +-+++..|- .++.. |.|..+.-.+|++|.-+
T Consensus 299 eEeKm~PWmq--~i~DnLE~L~~~~~~~-~~~l~~~l~~~~iev--------~alt~IRGRSl~~~FiI 356 (436)
T COG1875 299 EEEKMGPWMQ--AIFDNLEVLFSPNEPG-DRALEEILSRGRIEV--------EALTYIRGRSLPDSFII 356 (436)
T ss_pred hhhhccchHH--HHHhHHHHHhcccccc-hHHHHHHHhccceee--------eeeeeecccccccceEE
Confidence 4789999986 6678999999999999 555554433 23322 45666666777776544
No 17
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=30.74 E-value=11 Score=29.24 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=37.6
Q ss_pred eEEeeecceeeEeCHHHHHhhcccccCCceeeecccccCCCCceeeeeeeeccCCCceecc
Q psy2488 32 KFWFGTGGAGYCISRALALKMLPIASGGKFISICEKIRLPDDCTMGYIIEHRLQRPMTVIE 92 (142)
Q Consensus 32 ~fwFATGGAG~CiSr~La~KM~pwa~~g~f~~t~~~irlPDDctlG~IIe~~Lgv~lt~s~ 92 (142)
...|+.|+. +++.|....++ |-|-..+. .+-||+.+|-.+- ..|.++..++
T Consensus 97 ~~~~~~G~~-m~~rr~~L~~~------GG~~~l~~--~ladD~~l~~~~~-~~G~~v~~~~ 147 (175)
T PF13506_consen 97 GAPFAWGGS-MAFRREALEEI------GGFEALAD--YLADDYALGRRLR-ARGYRVVLSP 147 (175)
T ss_pred CCCceecce-eeeEHHHHHHc------ccHHHHhh--hhhHHHHHHHHHH-HCCCeEEEcc
Confidence 457888877 99999888765 22323333 6799999999988 5688887777
No 18
>smart00311 PWI PWI, domain in splicing factors.
Probab=27.78 E-value=3.6 Score=28.03 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=29.1
Q ss_pred CHHHHHhhcccccCCceeeecccccCCCCceeeeeeeeccC
Q psy2488 45 SRALALKMLPIASGGKFISICEKIRLPDDCTMGYIIEHRLQ 85 (142)
Q Consensus 45 Sr~La~KM~pwa~~g~f~~t~~~irlPDDctlG~IIe~~Lg 85 (142)
||-...+|+||.+. ..-+-++.-||+.+-||++++.+
T Consensus 2 ~kv~~~~lk~WI~~----kv~e~LG~~d~~vvd~i~~~l~~ 38 (74)
T smart00311 2 SKLKLDEIKPWITK----KVIEFLGFEEDTLVEFILSQIRQ 38 (74)
T ss_pred chhHHHHHHHHHHH----HHHHHHCCChHHHHHHHHHHHHh
Confidence 56677899999983 34567789999999999996543
No 19
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=27.32 E-value=12 Score=33.78 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=36.2
Q ss_pred EEeeecceeeEeCHHHHHhhcccccCCce----------eeecccccCCCCceeeeeeeeccC
Q psy2488 33 FWFGTGGAGYCISRALALKMLPIASGGKF----------ISICEKIRLPDDCTMGYIIEHRLQ 85 (142)
Q Consensus 33 fwFATGGAG~CiSr~La~KM~pwa~~g~f----------~~t~~~irlPDDctlG~IIe~~Lg 85 (142)
..||.|++ |-|||-+|..+.-.....+. ..-....-+++|+-+|..|...++
T Consensus 246 PpY~~G~g-YvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiMvG~vLr~~~k 307 (382)
T PTZ00210 246 LTYVNGYC-ITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVMVGMILREKVV 307 (382)
T ss_pred CCccccce-eeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHHHHHHHHHhcC
Confidence 56877755 99999999998775443322 111224457999999999966655
No 20
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=25.47 E-value=26 Score=24.68 Aligned_cols=43 Identities=26% Similarity=0.297 Sum_probs=31.2
Q ss_pred HHHHHhhcccccCCceeeecccccCCCCceeeeeeeeccCCCceecccc
Q psy2488 46 RALALKMLPIASGGKFISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEF 94 (142)
Q Consensus 46 r~La~KM~pwa~~g~f~~t~~~irlPDDctlG~IIe~~Lgv~lt~s~lF 94 (142)
-.|..-+.+..+.+.+ ...++.+.||+-+|| .|||+.|+..+.
T Consensus 10 ~~L~~flp~~~r~~~~-----~~~~~~~~tvkd~IE-sLGVP~tEV~~i 52 (81)
T PF14451_consen 10 AELNDFLPPERRGGPF-----THPFDGGATVKDVIE-SLGVPHTEVGLI 52 (81)
T ss_pred hHHhhhcChhhcCCce-----EEecCCCCcHHHHHH-HcCCChHHeEEE
Confidence 3566666665554432 346788999999999 899999988654
No 21
>PF11185 DUF2971: Protein of unknown function (DUF2971); InterPro: IPR021352 This bacterial family of proteins has no known function.
Probab=24.11 E-value=36 Score=21.91 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=8.3
Q ss_pred eeecceeeEeCH
Q psy2488 35 FGTGGAGYCISR 46 (142)
Q Consensus 35 FATGGAG~CiSr 46 (142)
||-+|.|+||-=
T Consensus 5 Y~~~~~Gv~i~f 16 (90)
T PF11185_consen 5 YADNHKGVCIGF 16 (90)
T ss_pred hCCCCceEEEEE
Confidence 556678888754
No 22
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=22.94 E-value=79 Score=23.74 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=17.7
Q ss_pred eecceeeEeCHHHHHhh---cccc
Q psy2488 36 GTGGAGYCISRALALKM---LPIA 56 (142)
Q Consensus 36 ATGGAG~CiSr~La~KM---~pwa 56 (142)
..||.|+|++|.+..++ -||.
T Consensus 162 ~~~G~~~~~r~~~l~~vgg~~~~~ 185 (191)
T cd06436 162 GLGGNGQFMRLSALDGLIGEEPWS 185 (191)
T ss_pred EECCeeEEEeHHHHHHhhcCCCCc
Confidence 46899999999999999 6663
No 23
>cd00542 Ntn_PVA Penicillin V acylase (PVA), also known as conjugated bile salt acid hydrolase (CBAH), catalyzes the hydrolysis of penicillin V to yield 6-amino penicillanic acid (6-APA), an important key intermediate of semisynthetic penicillins. PVA has an N-terminal nucleophilic cysteine, as do other members of the Ntn hydrolase family to which PVA belongs. This nucleophilic cysteine is exposed by post-translational prossessing of the PVA precursor. PVA forms a homotetramer.
Probab=21.72 E-value=24 Score=29.85 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.5
Q ss_pred ceeccccccCccCcccC
Q psy2488 88 MTVIEEFHSHLEPMKFL 104 (142)
Q Consensus 88 lt~s~lFHSHlE~L~~l 104 (142)
||-+|.|-.||++|..+
T Consensus 172 mTN~P~y~~hl~nL~ny 188 (303)
T cd00542 172 LTNSPDFDWHLTNLRNY 188 (303)
T ss_pred ECCCCCcHHHHHHHHhH
Confidence 67789999999999764
No 24
>KOG3289|consensus
Probab=21.26 E-value=35 Score=28.22 Aligned_cols=10 Identities=50% Similarity=0.756 Sum_probs=7.7
Q ss_pred ccccccCccC
Q psy2488 91 IEEFHSHLEP 100 (142)
Q Consensus 91 s~lFHSHlE~ 100 (142)
.|||||||.-
T Consensus 47 VPLfH~~laL 56 (199)
T KOG3289|consen 47 VPLFHSHLAL 56 (199)
T ss_pred chhhcccccc
Confidence 5899998653
No 25
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=21.01 E-value=63 Score=26.06 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=18.6
Q ss_pred Eeeecc----eeeEeCHHHHHhhcc
Q psy2488 34 WFGTGG----AGYCISRALALKMLP 54 (142)
Q Consensus 34 wFATGG----AG~CiSr~La~KM~p 54 (142)
-||||+ +..++|.+|..+|.+
T Consensus 130 AFa~g~~~~~~~V~vt~gLl~~l~~ 154 (302)
T COG0501 130 AFALGGGPKNGRVVVTTGLLDLLND 154 (302)
T ss_pred ceecCCCCCCeeEEecHHHHhhCCH
Confidence 689999 789999999998876
No 26
>KOG1371|consensus
Probab=20.63 E-value=38 Score=30.21 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=13.7
Q ss_pred EeeecceeeEeCHHHHHhhc
Q psy2488 34 WFGTGGAGYCISRALALKML 53 (142)
Q Consensus 34 wFATGGAG~CiSr~La~KM~ 53 (142)
--.|||||||=|-..+.-.+
T Consensus 5 VLVtGgaGyiGsht~l~L~~ 24 (343)
T KOG1371|consen 5 VLVTGGAGYIGSHTVLALLK 24 (343)
T ss_pred EEEecCCcceehHHHHHHHh
Confidence 34699999998875444333
Done!