Query psy2488
Match_columns 142
No_of_seqs 96 out of 105
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 17:31:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2488.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2488hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 100.0 1.4E-39 4.9E-44 267.2 3.0 137 1-141 122-259 (280)
2 1t9f_A Protein 1D10; structura 48.7 6.2 0.00021 30.2 1.3 53 70-128 3-56 (187)
3 1x4q_A U4/U6 small nuclear rib 44.1 0.8 2.7E-05 32.0 -4.0 44 37-84 3-46 (92)
4 2jmk_A Hypothetical protein TA 43.5 12 0.00042 27.0 2.1 14 70-83 60-73 (111)
5 3mal_A Stromal cell-derived fa 18.8 35 0.0012 26.3 0.9 48 65-119 9-56 (199)
6 2oln_A NIKD protein; flavoprot 14.2 24 0.00082 27.9 -1.1 29 31-59 346-374 (397)
7 2ltn_B PEA lectin, beta chain; 13.2 61 0.0021 20.0 0.8 12 70-81 16-27 (52)
8 3iz6_B 40S ribosomal protein S 12.1 81 0.0028 25.2 1.4 22 52-76 189-210 (227)
9 3c37_A Peptidase, M48 family; 11.8 90 0.0031 24.2 1.6 19 34-52 76-94 (253)
10 2gf3_A MSOX, monomeric sarcosi 11.7 38 0.0013 26.3 -0.7 30 30-59 333-364 (389)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=100.00 E-value=1.4e-39 Score=267.17 Aligned_cols=137 Identities=44% Similarity=0.830 Sum_probs=115.4
Q ss_pred CCeeeccCCCCCCceeeccCCCCCcCccceeeEEeeecceeeEeCHHHHHhhcccccCCceeeecccccCCCCceeeeee
Q psy2488 1 EDWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGKFISICEKIRLPDDCTMGYII 80 (142)
Q Consensus 1 ~D~YlGkpS~~~pi~~~e~~~~~~~~~~~~v~fwFATGGAG~CiSr~La~KM~pwa~~g~f~~t~~~irlPDDctlG~II 80 (142)
+++|+|+++..+|+++.++...+ ....+.||||+|||||||||++|+||.+|++..+|+++|+.++.||||.||+|+
T Consensus 122 ~~~YiG~~~~~~~~~~~~~~~~~---~~~~~~~~y~~GGaG~vlSr~~l~~l~~~~~~~~~~~~~~~~~~~dD~~lG~Cl 198 (280)
T 2j0a_A 122 RDVYVGKPSLNRPIHASELQSKQ---RTKLVRFWFATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYII 198 (280)
T ss_dssp SCCEEECEEC----------------------CCEECGGGCEEEEHHHHHHHHHHHTTCTTSCCTTTTTSCHHHHHHHHH
T ss_pred CCEEEEEeccCccccccccCccc---cccccccCcccCCCEEEECHHHHHHHHHhhcccccccccccCCCCccHHHHHHH
Confidence 58999999999998876665433 235678999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCceeccccccCccCcccCCccccccceeeeecCCCCCccceeeccC-CCCCCCCCC
Q psy2488 81 EHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSYMQYAKDVVNRLNIES-FDTSVDPTR 141 (142)
Q Consensus 81 e~~Lgv~lt~s~lFHSHlE~L~~l~~~~L~~QvtlSyg~~~~~~~N~i~~~~-F~~~~DPtR 141 (142)
+..|||+++++++||||+|.|+++++++|.+||++|||.+++ +||++++++ |+.++||||
T Consensus 199 ~~~lGV~~~~~~~Fh~~~~~~~~~~~~~l~~~~~~s~~~~~~-~~n~~~~~~~f~~~~dp~r 259 (280)
T 2j0a_A 199 ECKLGGRLQPSPLFHSHLETLQLLGAAQLPEQVTLSYGVFEG-KLNVIKLPGPFSHEEDPSR 259 (280)
T ss_dssp HHTTCCCEEECTTCCCSSSCGGGCCTTTGGGCSEEECEEETT-EEECCCCCCSSCTTTCTTS
T ss_pred HhcCCCCceecccccCCCchhccCCHHHhccCcceecccccC-ccceeccCCccccccCCcc
Confidence 989999999999999999999999999999999999999988 999999999 999999999
No 2
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1
Probab=48.69 E-value=6.2 Score=30.15 Aligned_cols=53 Identities=15% Similarity=-0.048 Sum_probs=32.0
Q ss_pred CCCCceeeeeeeeccCCCceeccccccCccCcccCCccccccceeeeecC-CCCCcccee
Q psy2488 70 LPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSYMQ-YAKDVVNRL 128 (142)
Q Consensus 70 lPDDctlG~IIe~~Lgv~lt~s~lFHSHlE~L~~l~~~~L~~QvtlSyg~-~~~~~~N~i 128 (142)
-|++++.|-.|. +..+. | --.+|||... |++..=.+|||...+. .+||.|.+.
T Consensus 3 ~~~~V~~Gs~I~-L~h~~-t-~~~LHSH~~~---y~~gs~qQqVT~y~~~~D~nn~W~I~ 56 (187)
T 1t9f_A 3 DEDFVTCYSVLK-FINAN-D-GSRLHSHDVK---YGSGSGQQSVTAVKNSDDINSHWQIF 56 (187)
T ss_dssp TTCBCBTTCEEE-EEETT-T-CCEEEEEEEE---CSSSSCCEEEEEESCSSCGGGCEEEE
T ss_pred CCCEEEeCCEEE-EEECC-C-CcccEeCCcc---CCCCCCceEEEEECCCCCCCCEEEEE
Confidence 488999999986 33333 3 3678999643 3444445568885443 334455443
No 3
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.06 E-value=0.8 Score=32.05 Aligned_cols=44 Identities=9% Similarity=0.163 Sum_probs=36.5
Q ss_pred ecceeeEeCHHHHHhhcccccCCceeeecccccCCCCceeeeeeeecc
Q psy2488 37 TGGAGYCISRALALKMLPIASGGKFISICEKIRLPDDCTMGYIIEHRL 84 (142)
Q Consensus 37 TGGAG~CiSr~La~KM~pwa~~g~f~~t~~~irlPDDctlG~IIe~~L 84 (142)
.|--++.|||-=..+|+||.. . ..-+-++.-||+.|-||++.+.
T Consensus 3 ~~~~~~d~~kv~l~~lkpWI~-k---kv~e~LG~eD~~lVd~i~~~l~ 46 (92)
T 1x4q_A 3 SGSSGMALSKRELDELKPWIE-K---TVKRVLGFSEPTVVTAALNCVG 46 (92)
T ss_dssp CCSSCCCCCHHHHHHHHHHHH-H---HHHHHHSSCCHHHHHHHHHHHH
T ss_pred CCCCCccchHHhHHHHHHHHH-H---HHHHHcCCCcHHHHHHHHHHHH
Confidence 466788999999999999998 3 4566778899999999998544
No 4
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=43.52 E-value=12 Score=27.04 Aligned_cols=14 Identities=29% Similarity=0.850 Sum_probs=12.4
Q ss_pred CCCCceeeeeeeec
Q psy2488 70 LPDDCTMGYIIEHR 83 (142)
Q Consensus 70 lPDDctlG~IIe~~ 83 (142)
+|+|=|+||||-+.
T Consensus 60 mPEDKTvGFvviN~ 73 (111)
T 2jmk_A 60 MPEDKTVGFVVVNA 73 (111)
T ss_dssp CSSCEEEEEEEEET
T ss_pred CCCCceeEEEEEec
Confidence 69999999999853
No 5
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} SCOP: b.42.6.0
Probab=18.81 E-value=35 Score=26.34 Aligned_cols=48 Identities=25% Similarity=0.146 Sum_probs=28.1
Q ss_pred cccccCCCCceeeeeeeeccCCCceeccccccCccCcccCCccccccceeeeecC
Q psy2488 65 CEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSYMQ 119 (142)
Q Consensus 65 ~~~irlPDDctlG~IIe~~Lgv~lt~s~lFHSHlE~L~~l~~~~L~~QvtlSyg~ 119 (142)
+.+-..|++++.|-+|. |.-.-|. -.+|||... +|...-.+|||. |+.
T Consensus 9 ~~~~~~~~~V~~Gs~Vt--L~h~~t~-~~LHSH~~~---yp~gS~qQqVT~-y~~ 56 (199)
T 3mal_A 9 AASGKEGVEITYGSAIK--LMHEKTK-FRLHSHDVP---YGSGSGQQSVTG-FPG 56 (199)
T ss_dssp -------CBCBTTCEEE--EEETTTC-CEEEEEEEE---CSSTTCCEEEEE-ECC
T ss_pred cccCCCCCEEeeCCEEE--EEECCCC-CcceeCCcc---CCCCCCCEEEEe-eCC
Confidence 34457899999999996 3333343 588999754 455566677875 654
No 6
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=14.18 E-value=24 Score=27.87 Aligned_cols=29 Identities=10% Similarity=-0.011 Sum_probs=24.1
Q ss_pred eeEEeeecceeeEeCHHHHHhhcccccCC
Q psy2488 31 VKFWFGTGGAGYCISRALALKMLPIASGG 59 (142)
Q Consensus 31 v~fwFATGGAG~CiSr~La~KM~pwa~~g 59 (142)
-++|+|+||-|+.++-.++..|.-+..++
T Consensus 346 ~~l~~a~Gg~G~~~ap~~g~~la~~i~~~ 374 (397)
T 2oln_A 346 EKLVVYGAGWAFKFVPLFGRICADLAVED 374 (397)
T ss_dssp GGEEEEEESSCGGGHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCcchhhccHHHHHHHHHHHhCC
Confidence 47899999999999988888888776544
No 7
>2ltn_B PEA lectin, beta chain; 1.70A {Pisum sativum} SCOP: b.29.1.1 PDB: 1hkd_B 1rin_B* 1ofs_B* 1bqp_B* 1loe_B 1loa_B* 1loc_B* 1lod_B* 1lob_B 1lof_B* 1log_B* 1lof_D* 1les_B* 2b7y_B* 1lgc_B* 1lgb_B* 1len_B 1lem_B 2lal_B
Probab=13.19 E-value=61 Score=20.01 Aligned_cols=12 Identities=17% Similarity=0.507 Sum_probs=10.5
Q ss_pred CCCCceeeeeee
Q psy2488 70 LPDDCTMGYIIE 81 (142)
Q Consensus 70 lPDDctlG~IIe 81 (142)
+||.|.|||--.
T Consensus 16 l~e~v~VGFSAs 27 (52)
T 2ltn_B 16 VPEWVRIGFSAT 27 (52)
T ss_dssp SCSEEEEEEEEE
T ss_pred cCceEEEEEEec
Confidence 689999999866
No 8
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=12.10 E-value=81 Score=25.23 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=18.0
Q ss_pred hcccccCCceeeecccccCCCCcee
Q psy2488 52 MLPIASGGKFISICEKIRLPDDCTM 76 (142)
Q Consensus 52 M~pwa~~g~f~~t~~~irlPDDctl 76 (142)
|.||-..| .+..+..|||.++|
T Consensus 189 ~~~~dp~g---~~g~~~~lpD~v~i 210 (227)
T 3iz6_B 189 MLDWDPKG---KLGPTTPLPDLVTI 210 (227)
T ss_dssp ECSCTTSC---CCCCSSCCCCCCSC
T ss_pred ECCCCccc---ccCCCCCCCCeEEE
Confidence 46787777 47889999999887
No 9
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=11.78 E-value=90 Score=24.22 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=16.2
Q ss_pred EeeecceeeEeCHHHHHhh
Q psy2488 34 WFGTGGAGYCISRALALKM 52 (142)
Q Consensus 34 wFATGGAG~CiSr~La~KM 52 (142)
=||+||.-++|+++|...+
T Consensus 76 Afa~~gg~I~v~~gLl~~l 94 (253)
T 3c37_A 76 AFAIPGGRVYVHTGLLKAA 94 (253)
T ss_dssp EEEETTTEEEEEHHHHHHC
T ss_pred eeEcCCCeEEeeHHHHhhC
Confidence 3678887799999999888
No 10
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=11.69 E-value=38 Score=26.31 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=24.7
Q ss_pred eeeEEeeec--ceeeEeCHHHHHhhcccccCC
Q psy2488 30 FVKFWFGTG--GAGYCISRALALKMLPIASGG 59 (142)
Q Consensus 30 ~v~fwFATG--GAG~CiSr~La~KM~pwa~~g 59 (142)
.-+.|+|+| |-|+.++-.++..|.-+..++
T Consensus 333 ~~~l~~a~G~~g~G~~~ap~~g~~la~~i~~~ 364 (389)
T 2gf3_A 333 HSNVVIAAGFSGHGFKFSSGVGEVLSQLALTG 364 (389)
T ss_dssp EEEEEEEECCTTCCGGGHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCccccccccHHHHHHHHHHHcCC
Confidence 347899998 889999999999998877644
Done!