Query psy2488
Match_columns 142
No_of_seqs 96 out of 105
Neff 4.4
Searched_HMMs 13730
Date Fri Aug 16 17:32:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2488.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2488hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t9fa_ b.42.6.1 (A:) Hypothet 25.8 15 0.0011 25.6 2.0 55 73-133 6-61 (178)
2 d1nyra2 d.15.10.1 (A:4-62) Thr 16.1 37 0.0027 19.6 1.9 35 42-78 24-58 (59)
3 d1t0ga_ d.120.1.2 (A:) Putativ 13.5 23 0.0017 23.6 0.4 38 95-137 3-42 (109)
4 d1p9ka_ d.66.1.6 (A:) Hypothet 12.5 7.7 0.00056 24.3 -2.2 15 40-54 30-44 (79)
5 d1jyoa_ d.198.1.1 (A:) Virulen 12.1 12 0.00087 24.4 -1.4 16 31-46 71-86 (130)
6 d1pkha_ b.85.4.1 (A:) Bifuncti 11.9 32 0.0023 23.4 0.8 18 59-76 95-112 (182)
7 d2fz5a1 c.23.5.1 (A:1-137) Fla 11.7 52 0.0038 20.7 1.9 43 30-74 81-124 (137)
8 d1xs1a_ b.85.4.1 (A:) Deoxycyt 11.1 35 0.0025 24.0 0.8 15 61-75 90-104 (193)
9 d1mp1a_ a.188.1.1 (A:) Ser/Arg 10.4 5.2 0.00038 27.3 -3.8 30 50-83 23-52 (111)
10 d1o69a_ c.67.1.4 (A:) Aminotra 9.9 52 0.0038 24.0 1.5 24 36-59 176-201 (374)
No 1
>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) {Caenorhabditis elegans [TaxId: 6239]}
Probab=25.85 E-value=15 Score=25.59 Aligned_cols=55 Identities=13% Similarity=-0.083 Sum_probs=35.7
Q ss_pred CceeeeeeeeccCCCceeccccccCccCcccCCccccccceeeeecCC-CCCccceeeccCC
Q psy2488 73 DCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSYMQY-AKDVVNRLNIESF 133 (142)
Q Consensus 73 DctlG~IIe~~Lgv~lt~s~lFHSHlE~L~~l~~~~L~~QvtlSyg~~-~~~~~N~i~~~~F 133 (142)
=+|.|-+|. +..+. | --.+|||-.. ||...-.+|||...... +||.|.+....+.
T Consensus 6 ~V~~Gs~i~-l~~~~-t-~~~LHSH~~~---Y~~gS~qQqVT~~~~~~d~Nn~W~I~~~~~~ 61 (178)
T d1t9fa_ 6 FVTCYSVLK-FINAN-D-GSRLHSHDVK---YGSGSGQQSVTAVKNSDDINSHWQIFPALNA 61 (178)
T ss_dssp BCBTTCEEE-EEETT-T-CCEEEEEEEE---CSSSSCCEEEEEESCSSCGGGCEEEEECTTC
T ss_pred EEEECeEEE-EEECC-C-CCceecCccc---CCCCCCCceEEEeCCcccCCCcEEEecCCCC
Confidence 367788886 44444 4 3477999654 66666788899876653 3556666655443
No 2
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]}
Probab=16.08 E-value=37 Score=19.62 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=27.5
Q ss_pred eEeCHHHHHhhcccccCCceeeecccccCCCCceeee
Q psy2488 42 YCISRALALKMLPIASGGKFISICEKIRLPDDCTMGY 78 (142)
Q Consensus 42 ~CiSr~La~KM~pwa~~g~f~~t~~~irlPDDctlG~ 78 (142)
+-||..|+++..-.--+|+++..+..| .+||+|=+
T Consensus 24 ~~I~~~l~k~avaa~vNg~~~dL~~~l--~~d~~vei 58 (59)
T d1nyra2 24 QSISPGLRKKAVAGKFNGQLVDLTKPL--ETDGSIEI 58 (59)
T ss_dssp HTTCHHHHHHCCEEEETTEEECTTSCC--CSCBCCCE
T ss_pred HHHChhhhheEEEEEECCEEccCCcCc--CCCCEEEE
Confidence 468999999998888889888777665 48887643
No 3
>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=13.47 E-value=23 Score=23.61 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=26.2
Q ss_pred ccCccCcccCCccccccceeeeecCCCCCccceeeccC--CCCCC
Q psy2488 95 HSHLEPMKFLHQDKFSQQVTFSYMQYAKDVVNRLNIES--FDTSV 137 (142)
Q Consensus 95 HSHlE~L~~l~~~~L~~QvtlSyg~~~~~~~N~i~~~~--F~~~~ 137 (142)
|.|...|..+.+++|.+ |-...+.+.-.|.|.| |++..
T Consensus 3 ~~~~~~~~~fT~eeL~~-----ydG~~~~~piyvAi~G~VyDVt~ 42 (109)
T d1t0ga_ 3 HHHHHHLEEFTAEQLSQ-----YNGTDESKPIYVAIKGRVFDVTT 42 (109)
T ss_dssp CCCCSSSEEEEHHHHTT-----CSSCSSSCCCEEEETTEEEECGG
T ss_pred chhhhhhhhCCHHHHHH-----cCCCCCCccEEEEECCEEEEccC
Confidence 67778899999999998 7554221333567777 77653
No 4
>d1p9ka_ d.66.1.6 (A:) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]}
Probab=12.52 E-value=7.7 Score=24.28 Aligned_cols=15 Identities=27% Similarity=0.240 Sum_probs=13.3
Q ss_pred eeeEeCHHHHHhhcc
Q psy2488 40 AGYCISRALALKMLP 54 (142)
Q Consensus 40 AG~CiSr~La~KM~p 54 (142)
+|+|-||+-|.+|.-
T Consensus 30 ~gl~~Sr~eAk~lI~ 44 (79)
T d1p9ka_ 30 EGWSESGAQAKIAIA 44 (79)
T ss_dssp HTSCSSSSTTSHHHH
T ss_pred CCCccCHHHHHHHHH
Confidence 679999999999876
No 5
>d1jyoa_ d.198.1.1 (A:) Virulence effector SptP secretion chaperone SicP {Salmonella typhimurium [TaxId: 90371]}
Probab=12.10 E-value=12 Score=24.42 Aligned_cols=16 Identities=0% Similarity=-0.257 Sum_probs=13.3
Q ss_pred eeEEeeecceeeEeCH
Q psy2488 31 VKFWFGTGGAGYCISR 46 (142)
Q Consensus 31 v~fwFATGGAG~CiSr 46 (142)
.-+|..|||+++|++.
T Consensus 71 N~~~~~t~g~~l~ld~ 86 (130)
T d1jyoa_ 71 NGELAANNEGTLAYID 86 (130)
T ss_dssp HHHHHHTTCCEEEEEG
T ss_pred hhhhhhcCCeEEEEec
Confidence 3578899999999975
No 6
>d1pkha_ b.85.4.1 (A:) Bifunctional dCTP deaminase/dUTPase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=11.88 E-value=32 Score=23.37 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=14.9
Q ss_pred CceeeecccccCCCCcee
Q psy2488 59 GKFISICEKIRLPDDCTM 76 (142)
Q Consensus 59 g~f~~t~~~irlPDDctl 76 (142)
.-+..|.|.+++|+|++-
T Consensus 95 ~~L~~t~E~v~lp~~~~~ 112 (182)
T d1pkha_ 95 GVLGTTNEYIELPNDISA 112 (182)
T ss_dssp CEEEEEEEEEECCTTEEE
T ss_pred EEEEEEEeEEEecCcceE
Confidence 456799999999999753
No 7
>d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]}
Probab=11.69 E-value=52 Score=20.74 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=26.4
Q ss_pred eeeEEeeecceeeEeC-HHHHHhhcccccCCceeeecccccCCCCc
Q psy2488 30 FVKFWFGTGGAGYCIS-RALALKMLPIASGGKFISICEKIRLPDDC 74 (142)
Q Consensus 30 ~v~fwFATGGAG~CiS-r~La~KM~pwa~~g~f~~t~~~irlPDDc 74 (142)
+.-.-|+|+|.++|=. +.|..+|+. .|-+++...-....|||-
T Consensus 81 k~~~~fgs~g~~~~~a~~~l~~~l~~--~G~~~v~~~~~~~~~~d~ 124 (137)
T d2fz5a1 81 KKVGLFGSYGWGSGEWMDAWKQRTED--TGATVIGTAIVNEMPDNA 124 (137)
T ss_dssp CEEEEEEEESSCCSHHHHHHHHHHHH--TTCEEEEEEEEESSSSSC
T ss_pred CeEEEEEecCCCcCHHHHHHHHHHHH--CCCEEeeceeecCCCChH
Confidence 5567899999876522 445555554 344666665666666664
No 8
>d1xs1a_ b.85.4.1 (A:) Deoxycytidine triphosphate deaminase (dCTP deaminase) {Escherichia coli [TaxId: 562]}
Probab=11.09 E-value=35 Score=23.98 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=12.6
Q ss_pred eeeecccccCCCCce
Q psy2488 61 FISICEKIRLPDDCT 75 (142)
Q Consensus 61 f~~t~~~irlPDDct 75 (142)
+..|.|.+++|+|++
T Consensus 90 L~~T~E~v~lP~~~~ 104 (193)
T d1xs1a_ 90 LAVTLESVTLPADLV 104 (193)
T ss_dssp EEEEEEEEECCTTEE
T ss_pred EEEEEEEEecCcceE
Confidence 448999999999964
No 9
>d1mp1a_ a.188.1.1 (A:) Ser/Arg-related nuclear matrix protein srm160 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.41 E-value=5.2 Score=27.34 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=25.4
Q ss_pred HhhcccccCCceeeecccccCCCCceeeeeeeec
Q psy2488 50 LKMLPIASGGKFISICEKIRLPDDCTMGYIIEHR 83 (142)
Q Consensus 50 ~KM~pwa~~g~f~~t~~~irlPDDctlG~IIe~~ 83 (142)
..|+||.. . ...+-++..||+-+.||++.+
T Consensus 23 ~~ikpWI~-k---kI~e~LG~EDdvvvd~i~~~L 52 (111)
T d1mp1a_ 23 EVIKPWIT-K---RVTEILGFEDDVVIEFIFNQL 52 (111)
T ss_dssp GGGHHHHH-H---HHHHHHSSCCSHHHHHHHHHT
T ss_pred HHHHHHHH-H---HHHHHhCcchHHHHHHHHHHH
Confidence 56899988 3 578889999999999999854
No 10
>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}
Probab=9.93 E-value=52 Score=23.99 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=18.0
Q ss_pred eecceeeEeC--HHHHHhhcccccCC
Q psy2488 36 GTGGAGYCIS--RALALKMLPIASGG 59 (142)
Q Consensus 36 ATGGAG~CiS--r~La~KM~pwa~~g 59 (142)
.|||.|+++. +.++.++..|...|
T Consensus 176 ~tgeGG~i~tnn~~~~~~~~~~~~~g 201 (374)
T d1o69a_ 176 TTSGGGMLIGKNKEKIEKARFYSTQA 201 (374)
T ss_dssp CCSSCEEEEESCHHHHHHHHHHTBTC
T ss_pred ccccceeehhhhHHHHHhhccccccc
Confidence 3777777664 89999998886555
Done!