RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2488
         (142 letters)



>gnl|CDD|190308 pfam02434, Fringe, Fringe-like.  The drosophila protein fringe
           (FNG) is a glucosaminyltransferase that controls the
           response of the Notch receptor to specific ligands. FNG
           is localised to the Golgi apparatus (not secreted as
           previously thought). Modification of Notch occurs
           through glycosylation by FNG. The xenopus homologue,
           lunatic fringe, has been implicated in a variety of
           functions.
          Length = 248

 Score =  180 bits (459), Expect = 3e-58
 Identities = 71/145 (48%), Positives = 92/145 (63%), Gaps = 13/145 (8%)

Query: 1   EDWYLGKRSIKTPLKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGK 60
           +D YLGK S+  P++   R   N+      V FWF TGGAG+CISR LALKM P ASGG+
Sbjct: 113 QDVYLGKPSLYRPIEATERVKNNRK-----VGFWFATGGAGFCISRGLALKMSPWASGGR 167

Query: 61  FISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSHLEPMKFLHQDKFSQQVTFSYMQY 120
           F+S  EKIRLPDDCT+GYIIE+ L  P+T    FHSHLE ++ L  +   +QVT SY ++
Sbjct: 168 FMSTSEKIRLPDDCTLGYIIENLLGVPLTHSPLFHSHLENLQDLPPETLHEQVTLSYGKF 227

Query: 121 AKDVVNRLNI----ESFDTSVDPTR 141
                N+ N+      F  ++DPTR
Sbjct: 228 W----NKRNVIKVKGGFSLNIDPTR 248


>gnl|CDD|133474 cd06532, Glyco_transf_25, Glycosyltransferase family 25
           [lipooligosaccharide (LOS) biosynthesis protein] is a
           family of glycosyltransferases involved in LOS
           biosynthesis. The members include the beta(1,4)
           galactosyltransferases: Lgt2 of Moraxella catarrhalis,
           LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of
           Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes
           the addition of galactose (Gal) to the growing chain of
           LOS on the cell surface. N. gonorrhoeae LgtB and LgtE
           link Gal-beta(1,4)  to GlcNAc (N-acetylglucosamine) and
           Glc (glucose), respectively. The genes encoding LgtB and
           LgtE are two genes of a five gene locus involved in the
           synthesis of gonococcal LOS. LgtE is believed to perform
           the first step in LOS biosynthesis.
          Length = 128

 Score = 29.9 bits (68), Expect = 0.22
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 9/39 (23%)

Query: 38  GGAGYCISRALALKMLPIASGGKFISICEKIRLPDDCTM 76
           G AGY +SR  A K+L         +  E I LP D  +
Sbjct: 99  GTAGYLVSRKGAKKLL---------AALEPIDLPVDVFL 128


>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
          Length = 484

 Score = 28.1 bits (63), Expect = 2.0
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 4/24 (16%)

Query: 38  GGAGYCISRALALKMLPIASGGKF 61
           GGA      ALAL+MLP+A G   
Sbjct: 163 GGAAA----ALALRMLPVADGSDM 182


>gnl|CDD|177995 PLN02367, PLN02367, lactoylglutathione lyase.
          Length = 233

 Score = 26.9 bits (59), Expect = 3.5
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 71  PDDCTMGYIIE---HRLQRPMTVIEEFHSHLEPMKFLHQDKFSQ-QVTFSYMQY 120
           PD+ T GYI++   +R++ P   + +F+S +  M  L +  F + + +  +M Y
Sbjct: 67  PDEATKGYIMQQTMYRIKDPKASL-DFYSRVLGMSLLKRLDFPEMKFSLYFMGY 119


>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine
           Kinase, Zeta-chain-associated protein of 70kDa.  Protein
           Tyrosine Kinase (PTK) family; Zeta-chain-associated
           protein of 70kDa (Zap-70); catalytic (c) domain. The
           PTKc family is part of a larger superfamily that
           includes the catalytic domains of other kinases such as
           protein serine/threonine kinases, RIO kinases, and
           phosphoinositide 3-kinase (PI3K). PTKs catalyze the
           transfer of the gamma-phosphoryl group from ATP to
           tyrosine (tyr) residues in protein substrates. Zap-70 is
           a member of the Syk subfamily of kinases, which are
           cytoplasmic (or nonreceptor) tyr kinases containing two
           Src homology 2 (SH2) domains N-terminal to the catalytic
           tyr kinase domain. Zap-70 is primarily expressed in
           T-cells and NK cells, and is a crucial component in
           T-cell receptor (TCR) signaling. Zap-70 binds the
           phosphorylated ITAM (immunoreceptor tyr activation
           motif) sequences of the activated TCR zeta-chain through
           its SH2 domains, leading to its phosphorylation and
           activation. It then phosphorylates target proteins,
           which propagate the signals to downstream pathways.
           Zap-70 is hardly detected in normal peripheral B-cells,
           but is present in some B-cell malignancies. It is used
           as a diagnostic marker for chronic lymphocytic leukemia
           (CLL) as it is associated with the more aggressive
           subtype of the disease.
          Length = 257

 Score = 26.8 bits (59), Expect = 4.6
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 14/85 (16%)

Query: 41  GYCISRALALKMLPIASGG---KFISICEKIRLPDDCTMGYIIEHRLQRPMTVIEEFHSH 97
           G C + AL L M  +ASGG   KF+S  +     D+ T+  ++E   Q  M +      +
Sbjct: 62  GVCEAEALMLVM-EMASGGPLNKFLSGKK-----DEITVSNVVELMHQVSMGM-----KY 110

Query: 98  LEPMKFLHQDKFSQQVTFSYMQYAK 122
           LE   F+H+D  ++ V      YAK
Sbjct: 111 LEGKNFVHRDLAARNVLLVNQHYAK 135


>gnl|CDD|165176 PHA02831, PHA02831, EEV host range protein; Provisional.
          Length = 268

 Score = 26.5 bits (58), Expect = 4.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 5  LGKRSIKTPLKILNREGKNKTSKQQF 30
          +GKR+ K P+ ILN   KNK  +  F
Sbjct: 73 IGKRNCKDPVTILNGYIKNKKDQYSF 98


>gnl|CDD|223048 PHA03333, PHA03333, putative ATPase subunit of terminase;
           Provisional.
          Length = 752

 Score = 26.3 bits (58), Expect = 7.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 108 KFSQQVTFSYMQYAKDVVNRLNIESFDTSVDPT 140
              + +  ++M  A  VV++  I     SVDPT
Sbjct: 422 PPFETLVTNFMTNAVPVVDQSGISRVYISVDPT 454


>gnl|CDD|221592 pfam12471, GTP_CH_N, GTP cyclohydrolase N terminal.  This domain
          family is found in bacteria and eukaryotes, and is
          approximately 190 amino acids in length. This family is
          the N terminal of GTP cyclohydrolase, the rate limiting
          enzyme in the synthesis of tetrahydrobiopterin.
          Length = 195

 Score = 25.6 bits (57), Expect = 8.1
 Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 5/23 (21%)

Query: 36 GTGGAGYCISRALALKMLPIASG 58
          G     Y I RALA     +A+G
Sbjct: 50 GAHSGSYSIYRALA-----VAAG 67


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0774    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,225,831
Number of extensions: 633244
Number of successful extensions: 480
Number of sequences better than 10.0: 1
Number of HSP's gapped: 475
Number of HSP's successfully gapped: 13
Length of query: 142
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 55
Effective length of database: 7,078,804
Effective search space: 389334220
Effective search space used: 389334220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.5 bits)