RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2488
         (142 letters)



>d1tfra1 a.60.7.1 (A:183-305) T4 RNase H {Bacteriophage T4 [TaxId:
           10665]}
          Length = 123

 Score = 24.8 bits (54), Expect = 3.5
 Identities = 5/19 (26%), Positives = 8/19 (42%)

Query: 76  MGYIIEHRLQRPMTVIEEF 94
             Y ++  L +    I EF
Sbjct: 105 YSYFVKAGLSKLTNSINEF 123


>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic
          enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
          Length = 308

 Score = 24.5 bits (53), Expect = 5.2
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 14 LKILNREGKNKTSKQQFVKFWFGTGGAGYCISRALALKMLPIASGGKFISICEKIRLPD 72
           ++  +      S+++++  +FG G A   I+  +  +M     G      C +I L D
Sbjct: 16 TRVTKK----LVSQEKYL--FFGAGAASTGIAEMIVHQM--QNEGISKEEACNRIYLMD 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0631    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 548,428
Number of extensions: 24153
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 4
Length of query: 142
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 65
Effective length of database: 1,350,386
Effective search space: 87775090
Effective search space used: 87775090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.5 bits)