BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2489
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KBC|A Chain A, Crystal Structure Of Gltph K55c-A364c Mutant Crosslinked
With Divalent Mercury
pdb|3KBC|B Chain B, Crystal Structure Of Gltph K55c-A364c Mutant Crosslinked
With Divalent Mercury
pdb|3KBC|C Chain C, Crystal Structure Of Gltph K55c-A364c Mutant Crosslinked
With Divalent Mercury
Length = 425
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 116/263 (44%), Gaps = 30/263 (11%)
Query: 111 KKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTVTMRQLSKFVATSI 170
+T+L+ + M KI+ + PIGV ++I + E + +L+K A
Sbjct: 179 SAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIA--YVMAEQGVHVVGELAKVTAA-- 234
Query: 171 GGFLVYHLIVIQ--LIYFLFTRK---NPYKYYVNFFPAILTAFATSSKSAALPITFQVMD 225
VY + +Q L+YF+ + +P + + A+LTAF T S S LP+T +V
Sbjct: 235 ----VYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAK 290
Query: 226 EKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIG---VCSVITSKLISIEDMTVTMRQLSKF 282
E + +S+ + F LP+G +I+M G A + + + + S L + +T+ + +
Sbjct: 291 E-MGISEGIYSFTLPLGATINMDGTALYQGVATFFIANALGSHLTVGQQLTIVLTAVLAS 349
Query: 283 VATS--IGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFF--PAILTAFATSSKDRVRTTVN 338
+ T+ G + +V+ + T N Y AIL D RT VN
Sbjct: 350 IGTAGVPGAGAIMLCMVLHSVGLPLTDPNVAAAYAMILGIDAIL--------DMGRTMVN 401
Query: 339 LMGDCYAVAVVDHLSRHELQDSV 361
+ GD A+V + EL+ V
Sbjct: 402 VTGDLTGTAIVAK-TEGELEKGV 423
>pdb|1XFH|A Chain A, Structure Of Glutamate Transporter Homolog From Pyrococcus
Horikoshii
pdb|1XFH|B Chain B, Structure Of Glutamate Transporter Homolog From Pyrococcus
Horikoshii
pdb|1XFH|C Chain C, Structure Of Glutamate Transporter Homolog From Pyrococcus
Horikoshii
pdb|2NWW|A Chain A, Crystal Structure Of Gltph In Complex With Tboa
pdb|2NWW|B Chain B, Crystal Structure Of Gltph In Complex With Tboa
pdb|2NWW|C Chain C, Crystal Structure Of Gltph In Complex With Tboa
pdb|2NWX|A Chain A, Crystal Structure Of Gltph In Complex With L-Aspartate And
Sodium Ions
pdb|2NWX|B Chain B, Crystal Structure Of Gltph In Complex With L-Aspartate And
Sodium Ions
pdb|2NWX|C Chain C, Crystal Structure Of Gltph In Complex With L-Aspartate And
Sodium Ions
Length = 422
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 112/253 (44%), Gaps = 33/253 (13%)
Query: 111 KKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTVTMRQLSKFVATSI 170
+T+L+ + M KI+ + PIGV ++I + E + +L+K A
Sbjct: 179 SAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIA--YVMAEQGVHVVGELAKVTAA-- 234
Query: 171 GGFLVYHLIVIQ--LIYFLFTRK---NPYKYYVNFFPAILTAFATSSKSAALPITFQVMD 225
VY + +Q L+YF+ + +P + + A+LTAF T S S LP+T +V
Sbjct: 235 ----VYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAK 290
Query: 226 EKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIGVC-----SVITSKLISIEDMTVTMRQLS 280
E + +S+ + F LP+G +I+M G A GVC + + S L + +T+ + +
Sbjct: 291 E-MGISEGIYSFTLPLGATINMDGTALYQ--GVCTFFIANALGSHLTVGQQLTIVLTAVL 347
Query: 281 KFVATS--IGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFF--PAILTAFATSSKDRVRTT 336
+ T+ G + +V+ + T N Y AIL D RT
Sbjct: 348 ASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAIL--------DMGRTM 399
Query: 337 VNLMGDCYAVAVV 349
VN+ GD A+V
Sbjct: 400 VNVTGDLTGTAIV 412
>pdb|2NWL|A Chain A, Crystal Structure Of Gltph In Complex With L-Asp
pdb|2NWL|B Chain B, Crystal Structure Of Gltph In Complex With L-Asp
pdb|2NWL|C Chain C, Crystal Structure Of Gltph In Complex With L-Asp
Length = 422
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 112/253 (44%), Gaps = 33/253 (13%)
Query: 111 KKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTVTMRQLSKFVATSI 170
+T+L+ + M KI+ + PIGV ++I + E + +L+K A
Sbjct: 179 SAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIA--YVMAEQGVHVVGELAKVTAA-- 234
Query: 171 GGFLVYHLIVIQ--LIYFLFTRK---NPYKYYVNFFPAILTAFATSSKSAALPITFQVMD 225
VY + +Q L+YF+ + +P + + A+LTAF T S S LP+T +V
Sbjct: 235 ----VYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAK 290
Query: 226 EKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIGVC-----SVITSKLISIEDMTVTMRQLS 280
E + +S+ + F LP+G +I+M G A GVC + + S L + +T+ + +
Sbjct: 291 E-MGISEGIYSFTLPLGATINMDGTALYQ--GVCTFFIANALGSHLTVGQQLTIVLTAVL 347
Query: 281 KFVATS--IGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFF--PAILTAFATSSKDRVRTT 336
+ T+ G + +V+ + T N Y AIL D RT
Sbjct: 348 ASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAIL--------DMGRTM 399
Query: 337 VNLMGDCYAVAVV 349
VN+ GD A+V
Sbjct: 400 VNVTGDLTGTAIV 412
>pdb|3V8F|A Chain A, Crystal Structure Of Crosslinked Gltph V216c-M385c Mutant
pdb|3V8F|B Chain B, Crystal Structure Of Crosslinked Gltph V216c-M385c Mutant
pdb|3V8F|C Chain C, Crystal Structure Of Crosslinked Gltph V216c-M385c Mutant
Length = 422
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 111/251 (44%), Gaps = 29/251 (11%)
Query: 111 KKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTVTMRQLSKFVATSI 170
+T+L+ + M KI+ + PIGV ++I + E + +L+K A
Sbjct: 179 SAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYCMA--EQGVHVVGELAKVTAA-- 234
Query: 171 GGFLVYHLIVIQ--LIYFLFTRK---NPYKYYVNFFPAILTAFATSSKSAALPITFQVMD 225
VY + +Q L+YF+ + +P + + A+LTAF T S S LP+T +V
Sbjct: 235 ----VYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAK 290
Query: 226 EKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIG---VCSVITSKLISIEDMTVTMRQLSKF 282
E + +S+ + F LP+G +I+M G A + + + + S L + +T+ + +
Sbjct: 291 E-MGISEGIYSFTLPLGATINMDGTALYQGVATFFIANALGSHLTVGQQLTIVLTAVLAS 349
Query: 283 VATS--IGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFF--PAILTAFATSSKDRVRTTVN 338
+ T+ G + +V+ + T N Y AIL D RT VN
Sbjct: 350 IGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYACILGIDAIL--------DMGRTMVN 401
Query: 339 LMGDCYAVAVV 349
+ GD A+V
Sbjct: 402 VTGDLTGTAIV 412
>pdb|3V8G|A Chain A, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|B Chain B, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|C Chain C, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|D Chain D, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|E Chain E, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
pdb|3V8G|F Chain F, Crystal Structure Of An Asymmetric Trimer Of A Glutamate
Transporter Homologue (Gltph)
Length = 422
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 110/252 (43%), Gaps = 31/252 (12%)
Query: 111 KKKTVLEFFQTVYTIMLKILLIAIWMTPIGVCSVITSKLISIEDMTVTMRQLSKFVATSI 170
+T+L+ + M KI + PIGV ++I + E + +L+K A
Sbjct: 179 SAETLLDAINGLAEAMYKICNGVMQYAPIGVFALIA--YVMAEQGVHVVGELAKVTAA-- 234
Query: 171 GGFLVYHLIVIQ--LIYFLFTRK---NPYKYYVNFFPAILTAFATSSKSAALPITFQVMD 225
VY + +Q L+YF+ + +P + + A+LTAF T S S LP+T +V
Sbjct: 235 ----VYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAK 290
Query: 226 EKVKMSQQVTRFVLPIGNSIHMTGLAQMTPIG---VCSVITSKLISIEDMTVTMRQLSKF 282
E + +S+ + F LP+G +I+M G A + + + + S L + +T+ +
Sbjct: 291 E-MGISEGIYSFTLPLGATINMDGTALYQGVATFFIANALGSHLTVGQQLTIVLTA---- 345
Query: 283 VATSIGGFLVYHLIVIQLIYFLFTRKNPYKYYVNFFPAILTAFA-----TSSKDRVRTTV 337
V SIG V I L L + P P + A+A + D RT V
Sbjct: 346 VLASIGTAGVPGAGAIMLAMVLHSVGLPLTD-----PNVCAAYAMILGIDAILDMGRTMV 400
Query: 338 NLMGDCYAVAVV 349
N+ GD A+V
Sbjct: 401 NVTGDLTGTAIV 412
>pdb|3HD6|A Chain A, Crystal Structure Of The Human Rhesus Glycoprotein Rhcg
Length = 490
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 48 GTATLGIIFFCIVFGAILGTLGPKKKTVLEFFQTVYTIIDG----TATLGIIFFCIVFGA 103
G + +G F FG L + F Q Y ++ A + C+ FGA
Sbjct: 90 GFSAVGFNFLLAAFGIQWALL---MQGWFHFLQDRYIVVGVENLINADFCVASVCVAFGA 146
Query: 104 ILGTLGPKKKTVLEFFQ-TVYTIMLKILL 131
+LG + P + ++ FFQ T++ + ILL
Sbjct: 147 VLGKVSPIQLLIMTFFQVTLFAVNEFILL 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.142 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,333,139
Number of Sequences: 62578
Number of extensions: 291694
Number of successful extensions: 728
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 7
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.6 bits)